monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/handlers/__init__.py +1 -0
- monai/handlers/average_precision.py +53 -0
- monai/inferers/inferer.py +10 -7
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/metrics/__init__.py +1 -0
- monai/metrics/average_precision.py +187 -0
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utility/array.py +2 -12
- monai/transforms/utils.py +1 -2
- monai/transforms/utils_pytorch_numpy_unification.py +2 -4
- monai/utils/enums.py +3 -2
- monai/utils/module.py +6 -6
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
- monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_average_precision.py +79 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1388 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +884 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_average_precision.py +162 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
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- tests/utils/misc/test_monai_utils_misc.py +103 -0
- tests/utils/misc/test_str2bool.py +34 -0
- tests/utils/misc/test_str2list.py +33 -0
- tests/utils/test_alias.py +44 -0
- tests/utils/test_component_store.py +73 -0
- tests/utils/test_deprecated.py +455 -0
- tests/utils/test_enum_bound_interp.py +75 -0
- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.transforms import RandHistogramShift
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS = []
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for p in TEST_NDARRAYS:
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TESTS.append(
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[
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{"num_control_points": 5, "prob": 0.0},
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{"img": p(np.arange(8).reshape((1, 2, 2, 2)))},
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np.arange(8).reshape((1, 2, 2, 2)),
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]
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)
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TESTS.append(
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[
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{"num_control_points": 5, "prob": 0.9},
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{"img": p(np.arange(8).reshape((1, 2, 2, 2)).astype(np.float32))},
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np.array([[[[0.0, 0.57227867], [1.1391707, 1.68990281]], [[2.75833219, 4.34445884], [5.70913743, 7.0]]]]),
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]
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)
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TESTS.append(
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[
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{"num_control_points": (5, 20), "prob": 0.9},
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{"img": p(np.arange(8).reshape((1, 2, 2, 2)).astype(np.float32))},
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np.array([[[[0.0, 1.17472492], [2.21553091, 2.88292011]], [[3.98407301, 5.01302123], [6.09275004, 7.0]]]]),
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]
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)
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WARN_TESTS = []
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for p in TEST_NDARRAYS:
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WARN_TESTS.append(
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[
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{"num_control_points": 5, "prob": 1.0},
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{"img": p(np.zeros(8).reshape((1, 2, 2, 2)))},
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np.zeros(8).reshape((1, 2, 2, 2)),
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]
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)
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class TestRandHistogramShift(unittest.TestCase):
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@parameterized.expand(TESTS)
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def test_rand_histogram_shift(self, input_param, input_data, expected_val):
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g = RandHistogramShift(**input_param)
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g.set_random_state(123)
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result = g(**input_data)
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assert_allclose(result, expected_val, rtol=1e-4, atol=1e-4, type_test="tensor")
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def test_interp(self):
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tr = RandHistogramShift()
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for array_type in (torch.tensor, np.array):
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x = array_type([0.0, 4.0, 6.0, 10.0])
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y = array_type([1.0, -1.0, 3.0, 5.0])
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yi = tr.interp(array_type([0, 2, 4, 8, 10]), x, y)
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self.assertEqual(yi.shape, (5,))
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assert_allclose(yi, array_type([1.0, 0.0, -1.0, 4.0, 5.0]))
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yi = tr.interp(array_type([-1, 11, 10.001, -0.001]), x, y)
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self.assertEqual(yi.shape, (4,))
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assert_allclose(yi, array_type([1.0, 5.0, 5.0, 1.0]))
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yi = tr.interp(array_type([[-2, 11], [1, 3], [8, 10]]), x, y)
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self.assertEqual(yi.shape, (3, 2))
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assert_allclose(yi, array_type([[1.0, 5.0], [0.5, -0.5], [4.0, 5.0]]))
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@parameterized.expand(WARN_TESTS)
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def test_warn(self, input_param, input_data, expected_val):
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with self.assertWarns(Warning):
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result = RandHistogramShift(**input_param)(**input_data)
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assert_allclose(result, expected_val, type_test="tensor")
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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from parameterized import parameterized
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from monai.data.synthetic import create_test_image_2d, create_test_image_3d
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from monai.transforms import KSpaceSpikeNoise, RandKSpaceSpikeNoise
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from monai.utils.misc import set_determinism
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS = []
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for shape in ((128, 64), (64, 48, 80)):
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for p in TEST_NDARRAYS:
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for channel_wise in (True, False):
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TESTS.append((shape, p, channel_wise))
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class TestRandKSpaceSpikeNoise(unittest.TestCase):
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def setUp(self):
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set_determinism(0)
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super().setUp()
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def tearDown(self):
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set_determinism(None)
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@staticmethod
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def get_data(im_shape, im_type):
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create_test_image = create_test_image_2d if len(im_shape) == 2 else create_test_image_3d
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im = create_test_image(*im_shape, rad_max=20, noise_max=0.0, num_seg_classes=5)[0][None]
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return im_type(im)
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@parameterized.expand(TESTS)
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def test_0_prob(self, im_shape, im_type, channel_wise):
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im = self.get_data(im_shape, im_type)
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intensity_range = [14, 15]
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t = RandKSpaceSpikeNoise(0.0, intensity_range, channel_wise)
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out = t(im)
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assert_allclose(out, im, type_test="tensor")
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@parameterized.expand(TESTS)
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def test_1_prob(self, im_shape, im_type, channel_wise):
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im = self.get_data(im_shape, im_type)
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intensity_range = [14, 14]
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t = RandKSpaceSpikeNoise(1.0, intensity_range, channel_wise)
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out = t(im)
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base_t = KSpaceSpikeNoise(t.sampled_locs, [14])
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out = out - base_t(im)
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assert_allclose(out, im * 0, type_test="tensor")
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@parameterized.expand(TESTS)
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def test_same_result(self, im_shape, im_type, channel_wise):
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im = self.get_data(im_shape, im_type)
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intensity_range = [14, 15]
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t = RandKSpaceSpikeNoise(0.0, intensity_range, channel_wise)
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t.set_random_state(42)
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out1 = t(deepcopy(im))
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t.set_random_state(42)
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out2 = t(deepcopy(im))
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assert_allclose(out1, out2, type_test="tensor")
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@parameterized.expand(TESTS)
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def test_intensity(self, im_shape, im_type, channel_wise):
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im = self.get_data(im_shape, im_type)
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intensity_range = [14, 14.1]
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t = RandKSpaceSpikeNoise(1.0, intensity_range, channel_wise)
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_ = t(deepcopy(im))
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self.assertGreaterEqual(t.sampled_k_intensity[0], 14)
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self.assertLessEqual(t.sampled_k_intensity[0], 14.1)
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@parameterized.expand(TESTS)
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def test_default_intensity(self, im_shape, im_type, channel_wise):
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im = self.get_data(im_shape, im_type)
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t = RandKSpaceSpikeNoise(1.0, intensity_range=None, channel_wise=channel_wise)
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out = t(deepcopy(im))
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self.assertEqual(out.shape, im.shape)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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from parameterized import parameterized
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from monai.data.synthetic import create_test_image_2d, create_test_image_3d
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from monai.transforms import RandKSpaceSpikeNoised
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from monai.utils.misc import set_determinism
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS = []
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for shape in ((128, 64), (64, 48, 80)):
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for p in TEST_NDARRAYS:
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TESTS.append((shape, p))
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KEYS = ["image", "label"]
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class TestKSpaceSpikeNoised(unittest.TestCase):
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def setUp(self):
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set_determinism(0)
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super().setUp()
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def tearDown(self):
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set_determinism(None)
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@staticmethod
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def get_data(im_shape, im_type):
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create_test_image = create_test_image_2d if len(im_shape) == 2 else create_test_image_3d
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ims = create_test_image(*im_shape, rad_max=20, noise_max=0.0, num_seg_classes=5)
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ims = [im_type(im[None]) for im in ims]
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return dict(zip(KEYS, ims))
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@parameterized.expand(TESTS)
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def test_same_result(self, im_shape, im_type):
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data = self.get_data(im_shape, im_type)
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t = RandKSpaceSpikeNoised(KEYS, prob=1.0, intensity_range=(13, 15), channel_wise=True)
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t.set_random_state(42)
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out1 = t(deepcopy(data))
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t.set_random_state(42)
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out2 = t(deepcopy(data))
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for k in KEYS:
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assert_allclose(out1[k], out2[k], atol=1e-10, type_test="tensor")
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@parameterized.expand(TESTS)
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def test_0_prob(self, im_shape, im_type):
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data = self.get_data(im_shape, im_type)
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t1 = RandKSpaceSpikeNoised(KEYS, prob=0.0, intensity_range=(13, 15), channel_wise=True)
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t2 = RandKSpaceSpikeNoised(KEYS, prob=0.0, intensity_range=(13, 15), channel_wise=True)
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out1 = t1(data)
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out2 = t2(data)
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for k in KEYS:
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assert_allclose(out1[k], data[k], type_test="tensor")
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assert_allclose(out2[k], data[k], type_test="tensor")
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.transforms import RandRicianNoise
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from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D
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TESTS = []
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for p in TEST_NDARRAYS:
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TESTS.append(("test_zero_mean", p, 0, 0.1))
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TESTS.append(("test_non_zero_mean", p, 1, 0.5))
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class TestRandRicianNoise(NumpyImageTestCase2D):
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@parameterized.expand(TESTS)
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def test_correct_results(self, _, in_type, mean, std):
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seed = 0
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33
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rician_fn = RandRicianNoise(prob=1.0, mean=mean, std=std)
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rician_fn.set_random_state(seed)
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im = in_type(self.imt)
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noised = rician_fn(im)
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if isinstance(im, torch.Tensor):
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self.assertEqual(im.dtype, noised.dtype)
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np.random.seed(seed)
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np.random.random()
|
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+
_std = np.random.uniform(0, std)
|
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expected = np.sqrt(
|
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+
(self.imt + np.random.normal(mean, _std, size=self.imt.shape)) ** 2
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+
+ np.random.normal(mean, _std, size=self.imt.shape) ** 2
|
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+
)
|
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+
if isinstance(noised, torch.Tensor):
|
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+
noised = noised.cpu()
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np.testing.assert_allclose(expected, noised, atol=1e-5)
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+
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50
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+
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+
if __name__ == "__main__":
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unittest.main()
|
@@ -0,0 +1,52 @@
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1
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# Copyright (c) MONAI Consortium
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2
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+
# Licensed under the Apache License, Version 2.0 (the "License");
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3
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+
# you may not use this file except in compliance with the License.
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4
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+
# You may obtain a copy of the License at
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5
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+
# http://www.apache.org/licenses/LICENSE-2.0
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+
# Unless required by applicable law or agreed to in writing, software
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7
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+
# distributed under the License is distributed on an "AS IS" BASIS,
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8
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+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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9
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+
# See the License for the specific language governing permissions and
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+
# limitations under the License.
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11
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+
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+
from __future__ import annotations
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+
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+
import unittest
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+
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import numpy as np
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+
import torch
|
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+
from parameterized import parameterized
|
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+
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20
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+
from monai.transforms import RandRicianNoised
|
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+
from tests.test_utils import TEST_NDARRAYS, NumpyImageTestCase2D
|
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+
|
23
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+
TESTS = []
|
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+
for p in TEST_NDARRAYS:
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+
TESTS.append(["test_zero_mean", p, ["img1", "img2"], 0, 0.1])
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+
TESTS.append(["test_non_zero_mean", p, ["img1", "img2"], 1, 0.5])
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+
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seed = 0
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+
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+
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+
class TestRandRicianNoisedNumpy(NumpyImageTestCase2D):
|
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+
@parameterized.expand(TESTS)
|
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+
def test_correct_results(self, _, in_type, keys, mean, std):
|
34
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+
rician_fn = RandRicianNoised(keys=keys, prob=1.0, mean=mean, std=std, dtype=np.float64)
|
35
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+
rician_fn.set_random_state(seed)
|
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+
noised = rician_fn({k: in_type(self.imt) for k in keys})
|
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+
np.random.seed(seed)
|
38
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+
for k in keys:
|
39
|
+
# simulate the `randomize` function of transform
|
40
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+
np.random.random()
|
41
|
+
_std = np.random.uniform(0, std)
|
42
|
+
expected = np.sqrt(
|
43
|
+
(self.imt + np.random.normal(mean, _std, size=self.imt.shape)) ** 2
|
44
|
+
+ np.random.normal(mean, _std, size=self.imt.shape) ** 2
|
45
|
+
)
|
46
|
+
if isinstance(noised[k], torch.Tensor):
|
47
|
+
noised[k] = noised[k].cpu()
|
48
|
+
np.testing.assert_allclose(expected, noised[k], atol=1e-5, rtol=1e-5)
|
49
|
+
|
50
|
+
|
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|
+
if __name__ == "__main__":
|
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+
unittest.main()
|
@@ -0,0 +1,166 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
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+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
import scipy.ndimage
|
18
|
+
import torch
|
19
|
+
from parameterized import parameterized
|
20
|
+
|
21
|
+
from monai.config import USE_COMPILED
|
22
|
+
from monai.data import MetaTensor, set_track_meta
|
23
|
+
from monai.transforms import RandRotate
|
24
|
+
from tests.lazy_transforms_utils import test_resampler_lazy
|
25
|
+
from tests.test_utils import (
|
26
|
+
TEST_NDARRAYS_ALL,
|
27
|
+
NumpyImageTestCase2D,
|
28
|
+
NumpyImageTestCase3D,
|
29
|
+
assert_allclose,
|
30
|
+
test_local_inversion,
|
31
|
+
)
|
32
|
+
|
33
|
+
TEST_CASES_2D: list[tuple] = []
|
34
|
+
for p in TEST_NDARRAYS_ALL:
|
35
|
+
TEST_CASES_2D.append((p, np.pi / 2, True, "bilinear", "border", False))
|
36
|
+
TEST_CASES_2D.append((p, np.pi / 4, True, "nearest", "border", False))
|
37
|
+
TEST_CASES_2D.append((p, np.pi, False, "nearest", "zeros", True))
|
38
|
+
if not USE_COMPILED:
|
39
|
+
TEST_CASES_2D.append((p, (-np.pi / 4, 0), False, "nearest", "zeros", True))
|
40
|
+
|
41
|
+
TEST_CASES_3D: list[tuple] = []
|
42
|
+
for p in TEST_NDARRAYS_ALL:
|
43
|
+
TEST_CASES_3D.append(
|
44
|
+
(p, np.pi / 2, -np.pi / 6, (0.0, np.pi), False, "bilinear", "border", False, (1, 81, 110, 112))
|
45
|
+
)
|
46
|
+
TEST_CASES_3D.append(
|
47
|
+
(
|
48
|
+
p,
|
49
|
+
np.pi / 4,
|
50
|
+
(-np.pi / 9, np.pi / 4.5),
|
51
|
+
(np.pi / 9, np.pi / 6),
|
52
|
+
False,
|
53
|
+
"nearest",
|
54
|
+
"border",
|
55
|
+
True,
|
56
|
+
(1, 97, 100, 97),
|
57
|
+
)
|
58
|
+
)
|
59
|
+
TEST_CASES_3D.append(
|
60
|
+
(
|
61
|
+
p,
|
62
|
+
0.0,
|
63
|
+
(2 * np.pi, 2.06 * np.pi),
|
64
|
+
(-np.pi / 180, np.pi / 180),
|
65
|
+
True,
|
66
|
+
"nearest",
|
67
|
+
"zeros",
|
68
|
+
True,
|
69
|
+
(1, 64, 48, 80),
|
70
|
+
)
|
71
|
+
)
|
72
|
+
TEST_CASES_3D.append((p, (-np.pi / 4, 0), 0, 0, False, "nearest", "zeros", False, (1, 64, 61, 87)))
|
73
|
+
|
74
|
+
|
75
|
+
class TestRandRotate2D(NumpyImageTestCase2D):
|
76
|
+
@parameterized.expand(TEST_CASES_2D)
|
77
|
+
def test_correct_results(self, im_type, degrees, keep_size, mode, padding_mode, align_corners):
|
78
|
+
init_param = {
|
79
|
+
"range_x": degrees,
|
80
|
+
"prob": 1.0,
|
81
|
+
"keep_size": keep_size,
|
82
|
+
"mode": mode,
|
83
|
+
"padding_mode": padding_mode,
|
84
|
+
"align_corners": align_corners,
|
85
|
+
"dtype": np.float64,
|
86
|
+
}
|
87
|
+
rotate_fn = RandRotate(**init_param)
|
88
|
+
rotate_fn.set_random_state(243)
|
89
|
+
call_param = {"img": im_type(self.imt[0])}
|
90
|
+
rotated = rotate_fn(**call_param)
|
91
|
+
|
92
|
+
# test lazy
|
93
|
+
test_resampler_lazy(rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243)
|
94
|
+
rotate_fn.lazy = False
|
95
|
+
|
96
|
+
_order = 0 if mode == "nearest" else 1
|
97
|
+
if mode == "border":
|
98
|
+
_mode = "nearest"
|
99
|
+
elif mode == "reflection":
|
100
|
+
_mode = "reflect"
|
101
|
+
else:
|
102
|
+
_mode = "constant"
|
103
|
+
angle = rotate_fn.x
|
104
|
+
expected = scipy.ndimage.rotate(
|
105
|
+
self.imt[0, 0], -np.rad2deg(angle), (0, 1), not keep_size, order=_order, mode=_mode, prefilter=False
|
106
|
+
)
|
107
|
+
expected = np.stack(expected).astype(np.float32)
|
108
|
+
rotated = rotated.cpu() if isinstance(rotated, torch.Tensor) else rotated
|
109
|
+
good = np.sum(np.isclose(expected, rotated[0], atol=1e-3))
|
110
|
+
self.assertLessEqual(np.abs(good - expected.size), 40, "diff at most 40 pixels")
|
111
|
+
|
112
|
+
|
113
|
+
@unittest.skipIf(USE_COMPILED, "unit tests not for compiled version.")
|
114
|
+
class TestRandRotate3D(NumpyImageTestCase3D):
|
115
|
+
@parameterized.expand(TEST_CASES_3D)
|
116
|
+
def test_correct_results(self, im_type, x, y, z, keep_size, mode, padding_mode, align_corners, expected):
|
117
|
+
init_param = {
|
118
|
+
"range_x": x,
|
119
|
+
"range_y": y,
|
120
|
+
"range_z": z,
|
121
|
+
"prob": 1.0,
|
122
|
+
"keep_size": keep_size,
|
123
|
+
"mode": mode,
|
124
|
+
"padding_mode": padding_mode,
|
125
|
+
"align_corners": align_corners,
|
126
|
+
"dtype": np.float64,
|
127
|
+
}
|
128
|
+
rotate_fn = RandRotate(**init_param)
|
129
|
+
rotate_fn.set_random_state(243)
|
130
|
+
im = im_type(self.imt[0])
|
131
|
+
call_param = {"img": im}
|
132
|
+
rotated = rotate_fn(**call_param)
|
133
|
+
|
134
|
+
# test lazy
|
135
|
+
test_resampler_lazy(rotate_fn, rotated, init_param=init_param, call_param=call_param, seed=243)
|
136
|
+
rotate_fn.lazy = False
|
137
|
+
|
138
|
+
assert_allclose(rotated.shape, expected, rtol=1e-7, atol=0)
|
139
|
+
test_local_inversion(rotate_fn, rotated, im)
|
140
|
+
|
141
|
+
set_track_meta(False)
|
142
|
+
rotated = rotate_fn(im)
|
143
|
+
self.assertNotIsInstance(rotated, MetaTensor)
|
144
|
+
self.assertIsInstance(rotated, torch.Tensor)
|
145
|
+
set_track_meta(True)
|
146
|
+
|
147
|
+
|
148
|
+
class TestRandRotateDtype(NumpyImageTestCase2D):
|
149
|
+
@parameterized.expand(TEST_CASES_2D)
|
150
|
+
def test_correct_results(self, im_type, degrees, keep_size, mode, padding_mode, align_corners):
|
151
|
+
rotate_fn = RandRotate(
|
152
|
+
range_x=1.0,
|
153
|
+
prob=0.5,
|
154
|
+
keep_size=keep_size,
|
155
|
+
mode=mode,
|
156
|
+
padding_mode=padding_mode,
|
157
|
+
align_corners=align_corners,
|
158
|
+
dtype=np.float64,
|
159
|
+
)
|
160
|
+
im = im_type(self.imt[0])
|
161
|
+
rotated = rotate_fn(im)
|
162
|
+
self.assertEqual(rotated.dtype, torch.float32)
|
163
|
+
|
164
|
+
|
165
|
+
if __name__ == "__main__":
|
166
|
+
unittest.main()
|
@@ -0,0 +1,100 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import numpy as np
|
17
|
+
import torch
|
18
|
+
|
19
|
+
from monai.data import MetaTensor, set_track_meta
|
20
|
+
from monai.transforms import RandRotate90
|
21
|
+
from tests.lazy_transforms_utils import test_resampler_lazy
|
22
|
+
from tests.test_utils import TEST_NDARRAYS_ALL, NumpyImageTestCase2D, assert_allclose, test_local_inversion
|
23
|
+
|
24
|
+
|
25
|
+
class TestRandRotate90(NumpyImageTestCase2D):
|
26
|
+
def test_default(self):
|
27
|
+
rotate = RandRotate90()
|
28
|
+
for p in TEST_NDARRAYS_ALL:
|
29
|
+
rotate.set_random_state(123)
|
30
|
+
im = p(self.imt[0])
|
31
|
+
call_param = {"img": im}
|
32
|
+
rotated = rotate(**call_param)
|
33
|
+
test_local_inversion(rotate, rotated, im)
|
34
|
+
expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
|
35
|
+
expected = np.stack(expected)
|
36
|
+
assert_allclose(rotated, p(expected), rtol=1.0e-5, atol=1.0e-8, type_test="tensor")
|
37
|
+
|
38
|
+
# test lazy
|
39
|
+
test_resampler_lazy(rotate, rotated, call_param=call_param, seed=123)
|
40
|
+
rotate.lazy = False
|
41
|
+
|
42
|
+
def test_k(self):
|
43
|
+
init_param = {"max_k": 2}
|
44
|
+
rotate = RandRotate90(**init_param)
|
45
|
+
for p in TEST_NDARRAYS_ALL:
|
46
|
+
im = p(self.imt[0])
|
47
|
+
set_track_meta(False)
|
48
|
+
rotated = rotate(im)
|
49
|
+
self.assertNotIsInstance(rotated, MetaTensor)
|
50
|
+
self.assertIsInstance(rotated, torch.Tensor)
|
51
|
+
|
52
|
+
set_track_meta(True)
|
53
|
+
rotate.set_random_state(123)
|
54
|
+
call_param = {"img": im}
|
55
|
+
rotated = rotate(**call_param)
|
56
|
+
test_local_inversion(rotate, rotated, im)
|
57
|
+
expected = [np.rot90(channel, 0, (0, 1)) for channel in self.imt[0]]
|
58
|
+
expected = np.stack(expected)
|
59
|
+
assert_allclose(rotated, p(expected), rtol=1.0e-5, atol=1.0e-8, type_test="tensor")
|
60
|
+
|
61
|
+
# test lazy
|
62
|
+
test_resampler_lazy(rotate, rotated, call_param=call_param, seed=123)
|
63
|
+
rotate.lazy = False
|
64
|
+
|
65
|
+
def test_spatial_axes(self):
|
66
|
+
rotate = RandRotate90(spatial_axes=(0, 1), prob=1.0)
|
67
|
+
for p in TEST_NDARRAYS_ALL:
|
68
|
+
rotate.set_random_state(1234)
|
69
|
+
im = p(self.imt[0])
|
70
|
+
call_param = {"img": im}
|
71
|
+
rotated = rotate(**call_param)
|
72
|
+
# test lazy
|
73
|
+
test_resampler_lazy(rotate, rotated, call_param=call_param, seed=1234)
|
74
|
+
rotate.lazy = False
|
75
|
+
|
76
|
+
self.assertEqual(len(rotated.applied_operations), 1)
|
77
|
+
expected = [np.rot90(channel, rotate._rand_k, (0, 1)) for channel in self.imt[0]]
|
78
|
+
expected = np.stack(expected)
|
79
|
+
assert_allclose(rotated, p(expected), rtol=1.0e-5, atol=1.0e-8, type_test="tensor")
|
80
|
+
test_local_inversion(rotate, rotated, im)
|
81
|
+
|
82
|
+
def test_prob_k_spatial_axes(self):
|
83
|
+
rotate = RandRotate90(prob=1.0, max_k=2, spatial_axes=(0, 1))
|
84
|
+
for p in TEST_NDARRAYS_ALL:
|
85
|
+
rotate.set_random_state(234)
|
86
|
+
im = p(self.imt[0])
|
87
|
+
call_param = {"img": im}
|
88
|
+
rotated = rotate(**call_param)
|
89
|
+
# test lazy
|
90
|
+
test_resampler_lazy(rotate, rotated, call_param=call_param, seed=234)
|
91
|
+
rotate.lazy = False
|
92
|
+
|
93
|
+
test_local_inversion(rotate, rotated, im)
|
94
|
+
expected = [np.rot90(channel, 1, (0, 1)) for channel in self.imt[0]]
|
95
|
+
expected = np.stack(expected)
|
96
|
+
assert_allclose(rotated, p(expected), rtol=1.0e-5, atol=1.0e-8, type_test="tensor")
|
97
|
+
|
98
|
+
|
99
|
+
if __name__ == "__main__":
|
100
|
+
unittest.main()
|