monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (787) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/utils.py +6 -13
  5. monai/handlers/__init__.py +1 -0
  6. monai/handlers/average_precision.py +53 -0
  7. monai/inferers/inferer.py +10 -7
  8. monai/inferers/utils.py +1 -2
  9. monai/losses/dice.py +2 -14
  10. monai/losses/ds_loss.py +1 -3
  11. monai/metrics/__init__.py +1 -0
  12. monai/metrics/average_precision.py +187 -0
  13. monai/networks/layers/simplelayers.py +2 -14
  14. monai/networks/utils.py +4 -16
  15. monai/transforms/compose.py +28 -11
  16. monai/transforms/croppad/array.py +1 -6
  17. monai/transforms/io/array.py +0 -1
  18. monai/transforms/transform.py +15 -6
  19. monai/transforms/utility/array.py +2 -12
  20. monai/transforms/utils.py +1 -2
  21. monai/transforms/utils_pytorch_numpy_unification.py +2 -4
  22. monai/utils/enums.py +3 -2
  23. monai/utils/module.py +6 -6
  24. monai/utils/tf32.py +0 -10
  25. monai/visualize/class_activation_maps.py +5 -8
  26. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
  27. monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
  28. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
  29. tests/apps/__init__.py +10 -0
  30. tests/apps/deepedit/__init__.py +10 -0
  31. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  32. tests/apps/deepgrow/__init__.py +10 -0
  33. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  34. tests/apps/deepgrow/transforms/__init__.py +10 -0
  35. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  36. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  37. tests/apps/detection/__init__.py +10 -0
  38. tests/apps/detection/metrics/__init__.py +10 -0
  39. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  40. tests/apps/detection/networks/__init__.py +10 -0
  41. tests/apps/detection/networks/test_retinanet.py +210 -0
  42. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  43. tests/apps/detection/test_box_transform.py +370 -0
  44. tests/apps/detection/utils/__init__.py +10 -0
  45. tests/apps/detection/utils/test_anchor_box.py +88 -0
  46. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  47. tests/apps/detection/utils/test_box_coder.py +43 -0
  48. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  49. tests/apps/detection/utils/test_detector_utils.py +96 -0
  50. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  51. tests/apps/nuclick/__init__.py +10 -0
  52. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  53. tests/apps/pathology/__init__.py +10 -0
  54. tests/apps/pathology/handlers/__init__.py +10 -0
  55. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  56. tests/apps/pathology/test_lesion_froc.py +333 -0
  57. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  58. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  59. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  60. tests/apps/pathology/transforms/__init__.py +10 -0
  61. tests/apps/pathology/transforms/post/__init__.py +10 -0
  62. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  63. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  64. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  65. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  66. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  67. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  68. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  69. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  70. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  71. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  72. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  73. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  74. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  75. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  76. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  77. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  78. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  79. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  80. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  81. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  82. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  83. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  84. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  85. tests/apps/reconstruction/__init__.py +10 -0
  86. tests/apps/reconstruction/nets/__init__.py +10 -0
  87. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  88. tests/apps/reconstruction/test_complex_utils.py +77 -0
  89. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  90. tests/apps/reconstruction/test_mri_utils.py +37 -0
  91. tests/apps/reconstruction/transforms/__init__.py +10 -0
  92. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  93. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  94. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  95. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  96. tests/apps/test_check_hash.py +53 -0
  97. tests/apps/test_cross_validation.py +74 -0
  98. tests/apps/test_decathlondataset.py +93 -0
  99. tests/apps/test_download_and_extract.py +70 -0
  100. tests/apps/test_download_url_yandex.py +45 -0
  101. tests/apps/test_mednistdataset.py +72 -0
  102. tests/apps/test_mmar_download.py +154 -0
  103. tests/apps/test_tciadataset.py +123 -0
  104. tests/apps/vista3d/__init__.py +10 -0
  105. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  106. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  107. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  108. tests/bundle/__init__.py +10 -0
  109. tests/bundle/test_bundle_ckpt_export.py +107 -0
  110. tests/bundle/test_bundle_download.py +435 -0
  111. tests/bundle/test_bundle_get_data.py +94 -0
  112. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  113. tests/bundle/test_bundle_trt_export.py +147 -0
  114. tests/bundle/test_bundle_utils.py +149 -0
  115. tests/bundle/test_bundle_verify_metadata.py +66 -0
  116. tests/bundle/test_bundle_verify_net.py +76 -0
  117. tests/bundle/test_bundle_workflow.py +272 -0
  118. tests/bundle/test_component_locator.py +38 -0
  119. tests/bundle/test_config_item.py +138 -0
  120. tests/bundle/test_config_parser.py +392 -0
  121. tests/bundle/test_reference_resolver.py +114 -0
  122. tests/config/__init__.py +10 -0
  123. tests/config/test_cv2_dist.py +53 -0
  124. tests/engines/__init__.py +10 -0
  125. tests/engines/test_ensemble_evaluator.py +94 -0
  126. tests/engines/test_prepare_batch_default.py +76 -0
  127. tests/engines/test_prepare_batch_default_dist.py +76 -0
  128. tests/engines/test_prepare_batch_diffusion.py +104 -0
  129. tests/engines/test_prepare_batch_extra_input.py +80 -0
  130. tests/fl/__init__.py +10 -0
  131. tests/fl/monai_algo/__init__.py +10 -0
  132. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  133. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  134. tests/fl/test_fl_monai_algo_stats.py +81 -0
  135. tests/fl/utils/__init__.py +10 -0
  136. tests/fl/utils/test_fl_exchange_object.py +63 -0
  137. tests/handlers/__init__.py +10 -0
  138. tests/handlers/test_handler_average_precision.py +79 -0
  139. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  140. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  141. tests/handlers/test_handler_classification_saver.py +64 -0
  142. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  143. tests/handlers/test_handler_clearml_image.py +65 -0
  144. tests/handlers/test_handler_clearml_stats.py +65 -0
  145. tests/handlers/test_handler_confusion_matrix.py +104 -0
  146. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  147. tests/handlers/test_handler_decollate_batch.py +66 -0
  148. tests/handlers/test_handler_early_stop.py +68 -0
  149. tests/handlers/test_handler_garbage_collector.py +73 -0
  150. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  151. tests/handlers/test_handler_ignite_metric.py +191 -0
  152. tests/handlers/test_handler_lr_scheduler.py +94 -0
  153. tests/handlers/test_handler_mean_dice.py +98 -0
  154. tests/handlers/test_handler_mean_iou.py +76 -0
  155. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  156. tests/handlers/test_handler_metrics_saver.py +89 -0
  157. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  158. tests/handlers/test_handler_mlflow.py +296 -0
  159. tests/handlers/test_handler_nvtx.py +93 -0
  160. tests/handlers/test_handler_panoptic_quality.py +89 -0
  161. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  162. tests/handlers/test_handler_post_processing.py +74 -0
  163. tests/handlers/test_handler_prob_map_producer.py +111 -0
  164. tests/handlers/test_handler_regression_metrics.py +160 -0
  165. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  166. tests/handlers/test_handler_rocauc.py +48 -0
  167. tests/handlers/test_handler_rocauc_dist.py +54 -0
  168. tests/handlers/test_handler_stats.py +281 -0
  169. tests/handlers/test_handler_surface_distance.py +113 -0
  170. tests/handlers/test_handler_tb_image.py +61 -0
  171. tests/handlers/test_handler_tb_stats.py +166 -0
  172. tests/handlers/test_handler_validation.py +59 -0
  173. tests/handlers/test_trt_compile.py +145 -0
  174. tests/handlers/test_write_metrics_reports.py +68 -0
  175. tests/inferers/__init__.py +10 -0
  176. tests/inferers/test_avg_merger.py +179 -0
  177. tests/inferers/test_controlnet_inferers.py +1388 -0
  178. tests/inferers/test_diffusion_inferer.py +236 -0
  179. tests/inferers/test_latent_diffusion_inferer.py +884 -0
  180. tests/inferers/test_patch_inferer.py +309 -0
  181. tests/inferers/test_saliency_inferer.py +55 -0
  182. tests/inferers/test_slice_inferer.py +57 -0
  183. tests/inferers/test_sliding_window_inference.py +377 -0
  184. tests/inferers/test_sliding_window_splitter.py +284 -0
  185. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  186. tests/inferers/test_zarr_avg_merger.py +326 -0
  187. tests/integration/__init__.py +10 -0
  188. tests/integration/test_auto3dseg_ensemble.py +211 -0
  189. tests/integration/test_auto3dseg_hpo.py +189 -0
  190. tests/integration/test_deepedit_interaction.py +122 -0
  191. tests/integration/test_downsample_block.py +50 -0
  192. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  193. tests/integration/test_integration_autorunner.py +201 -0
  194. tests/integration/test_integration_bundle_run.py +240 -0
  195. tests/integration/test_integration_classification_2d.py +282 -0
  196. tests/integration/test_integration_determinism.py +95 -0
  197. tests/integration/test_integration_fast_train.py +231 -0
  198. tests/integration/test_integration_gpu_customization.py +159 -0
  199. tests/integration/test_integration_lazy_samples.py +219 -0
  200. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  201. tests/integration/test_integration_segmentation_3d.py +304 -0
  202. tests/integration/test_integration_sliding_window.py +100 -0
  203. tests/integration/test_integration_stn.py +133 -0
  204. tests/integration/test_integration_unet_2d.py +67 -0
  205. tests/integration/test_integration_workers.py +61 -0
  206. tests/integration/test_integration_workflows.py +365 -0
  207. tests/integration/test_integration_workflows_adversarial.py +173 -0
  208. tests/integration/test_integration_workflows_gan.py +158 -0
  209. tests/integration/test_loader_semaphore.py +48 -0
  210. tests/integration/test_mapping_filed.py +122 -0
  211. tests/integration/test_meta_affine.py +183 -0
  212. tests/integration/test_metatensor_integration.py +114 -0
  213. tests/integration/test_module_list.py +76 -0
  214. tests/integration/test_one_of.py +283 -0
  215. tests/integration/test_pad_collation.py +124 -0
  216. tests/integration/test_reg_loss_integration.py +107 -0
  217. tests/integration/test_retinanet_predict_utils.py +154 -0
  218. tests/integration/test_seg_loss_integration.py +159 -0
  219. tests/integration/test_spatial_combine_transforms.py +185 -0
  220. tests/integration/test_testtimeaugmentation.py +186 -0
  221. tests/integration/test_vis_gradbased.py +69 -0
  222. tests/integration/test_vista3d_utils.py +159 -0
  223. tests/losses/__init__.py +10 -0
  224. tests/losses/deform/__init__.py +10 -0
  225. tests/losses/deform/test_bending_energy.py +88 -0
  226. tests/losses/deform/test_diffusion_loss.py +117 -0
  227. tests/losses/image_dissimilarity/__init__.py +10 -0
  228. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  229. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  230. tests/losses/test_adversarial_loss.py +94 -0
  231. tests/losses/test_barlow_twins_loss.py +109 -0
  232. tests/losses/test_cldice_loss.py +51 -0
  233. tests/losses/test_contrastive_loss.py +86 -0
  234. tests/losses/test_dice_ce_loss.py +123 -0
  235. tests/losses/test_dice_focal_loss.py +124 -0
  236. tests/losses/test_dice_loss.py +227 -0
  237. tests/losses/test_ds_loss.py +189 -0
  238. tests/losses/test_focal_loss.py +379 -0
  239. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  240. tests/losses/test_generalized_dice_loss.py +221 -0
  241. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  242. tests/losses/test_giou_loss.py +62 -0
  243. tests/losses/test_hausdorff_loss.py +264 -0
  244. tests/losses/test_masked_dice_loss.py +152 -0
  245. tests/losses/test_masked_loss.py +87 -0
  246. tests/losses/test_multi_scale.py +86 -0
  247. tests/losses/test_nacl_loss.py +167 -0
  248. tests/losses/test_perceptual_loss.py +122 -0
  249. tests/losses/test_spectral_loss.py +86 -0
  250. tests/losses/test_ssim_loss.py +59 -0
  251. tests/losses/test_sure_loss.py +72 -0
  252. tests/losses/test_tversky_loss.py +198 -0
  253. tests/losses/test_unified_focal_loss.py +66 -0
  254. tests/metrics/__init__.py +10 -0
  255. tests/metrics/test_compute_average_precision.py +162 -0
  256. tests/metrics/test_compute_confusion_matrix.py +294 -0
  257. tests/metrics/test_compute_f_beta.py +80 -0
  258. tests/metrics/test_compute_fid_metric.py +40 -0
  259. tests/metrics/test_compute_froc.py +143 -0
  260. tests/metrics/test_compute_generalized_dice.py +240 -0
  261. tests/metrics/test_compute_meandice.py +306 -0
  262. tests/metrics/test_compute_meaniou.py +223 -0
  263. tests/metrics/test_compute_mmd_metric.py +56 -0
  264. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  265. tests/metrics/test_compute_panoptic_quality.py +113 -0
  266. tests/metrics/test_compute_regression_metrics.py +196 -0
  267. tests/metrics/test_compute_roc_auc.py +155 -0
  268. tests/metrics/test_compute_variance.py +147 -0
  269. tests/metrics/test_cumulative.py +63 -0
  270. tests/metrics/test_cumulative_average.py +74 -0
  271. tests/metrics/test_cumulative_average_dist.py +48 -0
  272. tests/metrics/test_hausdorff_distance.py +209 -0
  273. tests/metrics/test_label_quality_score.py +134 -0
  274. tests/metrics/test_loss_metric.py +57 -0
  275. tests/metrics/test_metrics_reloaded.py +96 -0
  276. tests/metrics/test_ssim_metric.py +78 -0
  277. tests/metrics/test_surface_dice.py +416 -0
  278. tests/metrics/test_surface_distance.py +186 -0
  279. tests/networks/__init__.py +10 -0
  280. tests/networks/blocks/__init__.py +10 -0
  281. tests/networks/blocks/dints_block/__init__.py +10 -0
  282. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  283. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  284. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  285. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  286. tests/networks/blocks/test_adn.py +86 -0
  287. tests/networks/blocks/test_convolutions.py +156 -0
  288. tests/networks/blocks/test_crf_cpu.py +513 -0
  289. tests/networks/blocks/test_crf_cuda.py +528 -0
  290. tests/networks/blocks/test_crossattention.py +185 -0
  291. tests/networks/blocks/test_denseblock.py +105 -0
  292. tests/networks/blocks/test_dynunet_block.py +116 -0
  293. tests/networks/blocks/test_fpn_block.py +88 -0
  294. tests/networks/blocks/test_localnet_block.py +121 -0
  295. tests/networks/blocks/test_mlp.py +78 -0
  296. tests/networks/blocks/test_patchembedding.py +212 -0
  297. tests/networks/blocks/test_regunet_block.py +103 -0
  298. tests/networks/blocks/test_se_block.py +85 -0
  299. tests/networks/blocks/test_se_blocks.py +78 -0
  300. tests/networks/blocks/test_segresnet_block.py +57 -0
  301. tests/networks/blocks/test_selfattention.py +232 -0
  302. tests/networks/blocks/test_simple_aspp.py +87 -0
  303. tests/networks/blocks/test_spatialattention.py +55 -0
  304. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  305. tests/networks/blocks/test_text_encoding.py +49 -0
  306. tests/networks/blocks/test_transformerblock.py +90 -0
  307. tests/networks/blocks/test_unetr_block.py +158 -0
  308. tests/networks/blocks/test_upsample_block.py +134 -0
  309. tests/networks/blocks/warp/__init__.py +10 -0
  310. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  311. tests/networks/blocks/warp/test_warp.py +250 -0
  312. tests/networks/layers/__init__.py +10 -0
  313. tests/networks/layers/filtering/__init__.py +10 -0
  314. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  315. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  316. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  317. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  318. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  319. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  320. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  321. tests/networks/layers/test_affine_transform.py +385 -0
  322. tests/networks/layers/test_apply_filter.py +89 -0
  323. tests/networks/layers/test_channel_pad.py +51 -0
  324. tests/networks/layers/test_conjugate_gradient.py +56 -0
  325. tests/networks/layers/test_drop_path.py +46 -0
  326. tests/networks/layers/test_gaussian.py +317 -0
  327. tests/networks/layers/test_gaussian_filter.py +206 -0
  328. tests/networks/layers/test_get_layers.py +65 -0
  329. tests/networks/layers/test_gmm.py +314 -0
  330. tests/networks/layers/test_grid_pull.py +93 -0
  331. tests/networks/layers/test_hilbert_transform.py +131 -0
  332. tests/networks/layers/test_lltm.py +62 -0
  333. tests/networks/layers/test_median_filter.py +52 -0
  334. tests/networks/layers/test_polyval.py +55 -0
  335. tests/networks/layers/test_preset_filters.py +136 -0
  336. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  337. tests/networks/layers/test_separable_filter.py +87 -0
  338. tests/networks/layers/test_skip_connection.py +48 -0
  339. tests/networks/layers/test_vector_quantizer.py +89 -0
  340. tests/networks/layers/test_weight_init.py +50 -0
  341. tests/networks/nets/__init__.py +10 -0
  342. tests/networks/nets/dints/__init__.py +10 -0
  343. tests/networks/nets/dints/test_dints_cell.py +110 -0
  344. tests/networks/nets/dints/test_dints_mixop.py +84 -0
  345. tests/networks/nets/regunet/__init__.py +10 -0
  346. tests/networks/nets/regunet/test_localnet.py +86 -0
  347. tests/networks/nets/regunet/test_regunet.py +88 -0
  348. tests/networks/nets/test_ahnet.py +224 -0
  349. tests/networks/nets/test_attentionunet.py +88 -0
  350. tests/networks/nets/test_autoencoder.py +95 -0
  351. tests/networks/nets/test_autoencoderkl.py +337 -0
  352. tests/networks/nets/test_basic_unet.py +102 -0
  353. tests/networks/nets/test_basic_unetplusplus.py +109 -0
  354. tests/networks/nets/test_bundle_init_bundle.py +55 -0
  355. tests/networks/nets/test_cell_sam_wrapper.py +58 -0
  356. tests/networks/nets/test_controlnet.py +215 -0
  357. tests/networks/nets/test_daf3d.py +62 -0
  358. tests/networks/nets/test_densenet.py +121 -0
  359. tests/networks/nets/test_diffusion_model_unet.py +585 -0
  360. tests/networks/nets/test_dints_network.py +168 -0
  361. tests/networks/nets/test_discriminator.py +59 -0
  362. tests/networks/nets/test_dynunet.py +181 -0
  363. tests/networks/nets/test_efficientnet.py +400 -0
  364. tests/networks/nets/test_flexible_unet.py +341 -0
  365. tests/networks/nets/test_fullyconnectednet.py +69 -0
  366. tests/networks/nets/test_generator.py +59 -0
  367. tests/networks/nets/test_globalnet.py +103 -0
  368. tests/networks/nets/test_highresnet.py +67 -0
  369. tests/networks/nets/test_hovernet.py +218 -0
  370. tests/networks/nets/test_mednext.py +122 -0
  371. tests/networks/nets/test_milmodel.py +92 -0
  372. tests/networks/nets/test_net_adapter.py +68 -0
  373. tests/networks/nets/test_network_consistency.py +86 -0
  374. tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
  375. tests/networks/nets/test_quicknat.py +57 -0
  376. tests/networks/nets/test_resnet.py +340 -0
  377. tests/networks/nets/test_segresnet.py +120 -0
  378. tests/networks/nets/test_segresnet_ds.py +156 -0
  379. tests/networks/nets/test_senet.py +151 -0
  380. tests/networks/nets/test_spade_autoencoderkl.py +295 -0
  381. tests/networks/nets/test_spade_diffusion_model_unet.py +574 -0
  382. tests/networks/nets/test_spade_vaegan.py +140 -0
  383. tests/networks/nets/test_swin_unetr.py +139 -0
  384. tests/networks/nets/test_torchvision_fc_model.py +201 -0
  385. tests/networks/nets/test_transchex.py +84 -0
  386. tests/networks/nets/test_transformer.py +108 -0
  387. tests/networks/nets/test_unet.py +208 -0
  388. tests/networks/nets/test_unetr.py +137 -0
  389. tests/networks/nets/test_varautoencoder.py +127 -0
  390. tests/networks/nets/test_vista3d.py +84 -0
  391. tests/networks/nets/test_vit.py +139 -0
  392. tests/networks/nets/test_vitautoenc.py +112 -0
  393. tests/networks/nets/test_vnet.py +81 -0
  394. tests/networks/nets/test_voxelmorph.py +280 -0
  395. tests/networks/nets/test_vqvae.py +274 -0
  396. tests/networks/nets/test_vqvaetransformer_inferer.py +295 -0
  397. tests/networks/schedulers/__init__.py +10 -0
  398. tests/networks/schedulers/test_scheduler_ddim.py +83 -0
  399. tests/networks/schedulers/test_scheduler_ddpm.py +104 -0
  400. tests/networks/schedulers/test_scheduler_pndm.py +108 -0
  401. tests/networks/test_bundle_onnx_export.py +71 -0
  402. tests/networks/test_convert_to_onnx.py +106 -0
  403. tests/networks/test_convert_to_torchscript.py +46 -0
  404. tests/networks/test_convert_to_trt.py +79 -0
  405. tests/networks/test_save_state.py +73 -0
  406. tests/networks/test_to_onehot.py +63 -0
  407. tests/networks/test_varnet.py +63 -0
  408. tests/networks/utils/__init__.py +10 -0
  409. tests/networks/utils/test_copy_model_state.py +187 -0
  410. tests/networks/utils/test_eval_mode.py +34 -0
  411. tests/networks/utils/test_freeze_layers.py +61 -0
  412. tests/networks/utils/test_replace_module.py +98 -0
  413. tests/networks/utils/test_train_mode.py +34 -0
  414. tests/optimizers/__init__.py +10 -0
  415. tests/optimizers/test_generate_param_groups.py +105 -0
  416. tests/optimizers/test_lr_finder.py +108 -0
  417. tests/optimizers/test_lr_scheduler.py +71 -0
  418. tests/optimizers/test_optim_novograd.py +100 -0
  419. tests/profile_subclass/__init__.py +10 -0
  420. tests/profile_subclass/cprofile_profiling.py +29 -0
  421. tests/profile_subclass/min_classes.py +30 -0
  422. tests/profile_subclass/profiling.py +73 -0
  423. tests/profile_subclass/pyspy_profiling.py +41 -0
  424. tests/transforms/__init__.py +10 -0
  425. tests/transforms/compose/__init__.py +10 -0
  426. tests/transforms/compose/test_compose.py +758 -0
  427. tests/transforms/compose/test_some_of.py +258 -0
  428. tests/transforms/croppad/__init__.py +10 -0
  429. tests/transforms/croppad/test_rand_weighted_crop.py +224 -0
  430. tests/transforms/croppad/test_rand_weighted_cropd.py +182 -0
  431. tests/transforms/functional/__init__.py +10 -0
  432. tests/transforms/functional/test_apply.py +75 -0
  433. tests/transforms/functional/test_resample.py +50 -0
  434. tests/transforms/intensity/__init__.py +10 -0
  435. tests/transforms/intensity/test_compute_ho_ver_maps.py +75 -0
  436. tests/transforms/intensity/test_compute_ho_ver_maps_d.py +79 -0
  437. tests/transforms/intensity/test_foreground_mask.py +98 -0
  438. tests/transforms/intensity/test_foreground_maskd.py +106 -0
  439. tests/transforms/intensity/test_rand_histogram_shiftd.py +76 -0
  440. tests/transforms/intensity/test_scale_intensity_range_percentiles.py +96 -0
  441. tests/transforms/intensity/test_scale_intensity_range_percentilesd.py +100 -0
  442. tests/transforms/inverse/__init__.py +10 -0
  443. tests/transforms/inverse/test_inverse_array.py +76 -0
  444. tests/transforms/inverse/test_traceable_transform.py +59 -0
  445. tests/transforms/post/__init__.py +10 -0
  446. tests/transforms/post/test_label_filterd.py +78 -0
  447. tests/transforms/post/test_probnms.py +72 -0
  448. tests/transforms/post/test_probnmsd.py +79 -0
  449. tests/transforms/post/test_remove_small_objects.py +102 -0
  450. tests/transforms/spatial/__init__.py +10 -0
  451. tests/transforms/spatial/test_convert_box_points.py +119 -0
  452. tests/transforms/spatial/test_grid_patch.py +134 -0
  453. tests/transforms/spatial/test_grid_patchd.py +102 -0
  454. tests/transforms/spatial/test_rand_grid_patch.py +150 -0
  455. tests/transforms/spatial/test_rand_grid_patchd.py +117 -0
  456. tests/transforms/spatial/test_spatial_resampled.py +124 -0
  457. tests/transforms/test_activations.py +120 -0
  458. tests/transforms/test_activationsd.py +64 -0
  459. tests/transforms/test_adaptors.py +160 -0
  460. tests/transforms/test_add_coordinate_channels.py +53 -0
  461. tests/transforms/test_add_coordinate_channelsd.py +67 -0
  462. tests/transforms/test_add_extreme_points_channel.py +80 -0
  463. tests/transforms/test_add_extreme_points_channeld.py +77 -0
  464. tests/transforms/test_adjust_contrast.py +70 -0
  465. tests/transforms/test_adjust_contrastd.py +64 -0
  466. tests/transforms/test_affine.py +245 -0
  467. tests/transforms/test_affine_grid.py +152 -0
  468. tests/transforms/test_affined.py +190 -0
  469. tests/transforms/test_as_channel_last.py +38 -0
  470. tests/transforms/test_as_channel_lastd.py +44 -0
  471. tests/transforms/test_as_discrete.py +81 -0
  472. tests/transforms/test_as_discreted.py +82 -0
  473. tests/transforms/test_border_pad.py +49 -0
  474. tests/transforms/test_border_padd.py +45 -0
  475. tests/transforms/test_bounding_rect.py +54 -0
  476. tests/transforms/test_bounding_rectd.py +53 -0
  477. tests/transforms/test_cast_to_type.py +63 -0
  478. tests/transforms/test_cast_to_typed.py +74 -0
  479. tests/transforms/test_center_scale_crop.py +55 -0
  480. tests/transforms/test_center_scale_cropd.py +56 -0
  481. tests/transforms/test_center_spatial_crop.py +56 -0
  482. tests/transforms/test_center_spatial_cropd.py +63 -0
  483. tests/transforms/test_classes_to_indices.py +93 -0
  484. tests/transforms/test_classes_to_indicesd.py +110 -0
  485. tests/transforms/test_clip_intensity_percentiles.py +196 -0
  486. tests/transforms/test_clip_intensity_percentilesd.py +193 -0
  487. tests/transforms/test_compose_get_number_conversions.py +127 -0
  488. tests/transforms/test_concat_itemsd.py +82 -0
  489. tests/transforms/test_convert_to_multi_channel.py +59 -0
  490. tests/transforms/test_convert_to_multi_channeld.py +37 -0
  491. tests/transforms/test_copy_itemsd.py +86 -0
  492. tests/transforms/test_create_grid_and_affine.py +274 -0
  493. tests/transforms/test_crop_foreground.py +164 -0
  494. tests/transforms/test_crop_foregroundd.py +205 -0
  495. tests/transforms/test_cucim_dict_transform.py +142 -0
  496. tests/transforms/test_cucim_transform.py +141 -0
  497. tests/transforms/test_data_stats.py +221 -0
  498. tests/transforms/test_data_statsd.py +249 -0
  499. tests/transforms/test_delete_itemsd.py +58 -0
  500. tests/transforms/test_detect_envelope.py +159 -0
  501. tests/transforms/test_distance_transform_edt.py +202 -0
  502. tests/transforms/test_divisible_pad.py +49 -0
  503. tests/transforms/test_divisible_padd.py +42 -0
  504. tests/transforms/test_ensure_channel_first.py +113 -0
  505. tests/transforms/test_ensure_channel_firstd.py +85 -0
  506. tests/transforms/test_ensure_type.py +94 -0
  507. tests/transforms/test_ensure_typed.py +110 -0
  508. tests/transforms/test_fg_bg_to_indices.py +83 -0
  509. tests/transforms/test_fg_bg_to_indicesd.py +78 -0
  510. tests/transforms/test_fill_holes.py +207 -0
  511. tests/transforms/test_fill_holesd.py +209 -0
  512. tests/transforms/test_flatten_sub_keysd.py +64 -0
  513. tests/transforms/test_flip.py +83 -0
  514. tests/transforms/test_flipd.py +90 -0
  515. tests/transforms/test_fourier.py +70 -0
  516. tests/transforms/test_gaussian_sharpen.py +92 -0
  517. tests/transforms/test_gaussian_sharpend.py +92 -0
  518. tests/transforms/test_gaussian_smooth.py +96 -0
  519. tests/transforms/test_gaussian_smoothd.py +96 -0
  520. tests/transforms/test_generate_label_classes_crop_centers.py +71 -0
  521. tests/transforms/test_generate_pos_neg_label_crop_centers.py +76 -0
  522. tests/transforms/test_generate_spatial_bounding_box.py +114 -0
  523. tests/transforms/test_get_extreme_points.py +57 -0
  524. tests/transforms/test_gibbs_noise.py +73 -0
  525. tests/transforms/test_gibbs_noised.py +88 -0
  526. tests/transforms/test_grid_distortion.py +113 -0
  527. tests/transforms/test_grid_distortiond.py +87 -0
  528. tests/transforms/test_grid_split.py +88 -0
  529. tests/transforms/test_grid_splitd.py +96 -0
  530. tests/transforms/test_histogram_normalize.py +59 -0
  531. tests/transforms/test_histogram_normalized.py +59 -0
  532. tests/transforms/test_image_filter.py +259 -0
  533. tests/transforms/test_intensity_stats.py +73 -0
  534. tests/transforms/test_intensity_statsd.py +90 -0
  535. tests/transforms/test_inverse.py +521 -0
  536. tests/transforms/test_inverse_collation.py +147 -0
  537. tests/transforms/test_invert.py +105 -0
  538. tests/transforms/test_invertd.py +142 -0
  539. tests/transforms/test_k_space_spike_noise.py +81 -0
  540. tests/transforms/test_k_space_spike_noised.py +98 -0
  541. tests/transforms/test_keep_largest_connected_component.py +419 -0
  542. tests/transforms/test_keep_largest_connected_componentd.py +348 -0
  543. tests/transforms/test_label_filter.py +78 -0
  544. tests/transforms/test_label_to_contour.py +179 -0
  545. tests/transforms/test_label_to_contourd.py +182 -0
  546. tests/transforms/test_label_to_mask.py +69 -0
  547. tests/transforms/test_label_to_maskd.py +70 -0
  548. tests/transforms/test_load_image.py +502 -0
  549. tests/transforms/test_load_imaged.py +198 -0
  550. tests/transforms/test_load_spacing_orientation.py +149 -0
  551. tests/transforms/test_map_and_generate_sampling_centers.py +86 -0
  552. tests/transforms/test_map_binary_to_indices.py +75 -0
  553. tests/transforms/test_map_classes_to_indices.py +135 -0
  554. tests/transforms/test_map_label_value.py +89 -0
  555. tests/transforms/test_map_label_valued.py +85 -0
  556. tests/transforms/test_map_transform.py +45 -0
  557. tests/transforms/test_mask_intensity.py +74 -0
  558. tests/transforms/test_mask_intensityd.py +68 -0
  559. tests/transforms/test_mean_ensemble.py +77 -0
  560. tests/transforms/test_mean_ensembled.py +91 -0
  561. tests/transforms/test_median_smooth.py +41 -0
  562. tests/transforms/test_median_smoothd.py +65 -0
  563. tests/transforms/test_morphological_ops.py +101 -0
  564. tests/transforms/test_nifti_endianness.py +107 -0
  565. tests/transforms/test_normalize_intensity.py +143 -0
  566. tests/transforms/test_normalize_intensityd.py +81 -0
  567. tests/transforms/test_nvtx_decorator.py +289 -0
  568. tests/transforms/test_nvtx_transform.py +143 -0
  569. tests/transforms/test_orientation.py +247 -0
  570. tests/transforms/test_orientationd.py +112 -0
  571. tests/transforms/test_rand_adjust_contrast.py +45 -0
  572. tests/transforms/test_rand_adjust_contrastd.py +44 -0
  573. tests/transforms/test_rand_affine.py +201 -0
  574. tests/transforms/test_rand_affine_grid.py +212 -0
  575. tests/transforms/test_rand_affined.py +281 -0
  576. tests/transforms/test_rand_axis_flip.py +50 -0
  577. tests/transforms/test_rand_axis_flipd.py +50 -0
  578. tests/transforms/test_rand_bias_field.py +69 -0
  579. tests/transforms/test_rand_bias_fieldd.py +65 -0
  580. tests/transforms/test_rand_coarse_dropout.py +110 -0
  581. tests/transforms/test_rand_coarse_dropoutd.py +107 -0
  582. tests/transforms/test_rand_coarse_shuffle.py +65 -0
  583. tests/transforms/test_rand_coarse_shuffled.py +59 -0
  584. tests/transforms/test_rand_crop_by_label_classes.py +170 -0
  585. tests/transforms/test_rand_crop_by_label_classesd.py +159 -0
  586. tests/transforms/test_rand_crop_by_pos_neg_label.py +152 -0
  587. tests/transforms/test_rand_crop_by_pos_neg_labeld.py +172 -0
  588. tests/transforms/test_rand_cucim_dict_transform.py +162 -0
  589. tests/transforms/test_rand_cucim_transform.py +162 -0
  590. tests/transforms/test_rand_deform_grid.py +138 -0
  591. tests/transforms/test_rand_elastic_2d.py +127 -0
  592. tests/transforms/test_rand_elastic_3d.py +104 -0
  593. tests/transforms/test_rand_elasticd_2d.py +177 -0
  594. tests/transforms/test_rand_elasticd_3d.py +156 -0
  595. tests/transforms/test_rand_flip.py +60 -0
  596. tests/transforms/test_rand_flipd.py +55 -0
  597. tests/transforms/test_rand_gaussian_noise.py +48 -0
  598. tests/transforms/test_rand_gaussian_noised.py +54 -0
  599. tests/transforms/test_rand_gaussian_sharpen.py +140 -0
  600. tests/transforms/test_rand_gaussian_sharpend.py +143 -0
  601. tests/transforms/test_rand_gaussian_smooth.py +98 -0
  602. tests/transforms/test_rand_gaussian_smoothd.py +98 -0
  603. tests/transforms/test_rand_gibbs_noise.py +103 -0
  604. tests/transforms/test_rand_gibbs_noised.py +117 -0
  605. tests/transforms/test_rand_grid_distortion.py +99 -0
  606. tests/transforms/test_rand_grid_distortiond.py +90 -0
  607. tests/transforms/test_rand_histogram_shift.py +92 -0
  608. tests/transforms/test_rand_k_space_spike_noise.py +92 -0
  609. tests/transforms/test_rand_k_space_spike_noised.py +76 -0
  610. tests/transforms/test_rand_rician_noise.py +52 -0
  611. tests/transforms/test_rand_rician_noised.py +52 -0
  612. tests/transforms/test_rand_rotate.py +166 -0
  613. tests/transforms/test_rand_rotate90.py +100 -0
  614. tests/transforms/test_rand_rotate90d.py +112 -0
  615. tests/transforms/test_rand_rotated.py +187 -0
  616. tests/transforms/test_rand_scale_crop.py +78 -0
  617. tests/transforms/test_rand_scale_cropd.py +98 -0
  618. tests/transforms/test_rand_scale_intensity.py +54 -0
  619. tests/transforms/test_rand_scale_intensity_fixed_mean.py +41 -0
  620. tests/transforms/test_rand_scale_intensity_fixed_meand.py +41 -0
  621. tests/transforms/test_rand_scale_intensityd.py +53 -0
  622. tests/transforms/test_rand_shift_intensity.py +52 -0
  623. tests/transforms/test_rand_shift_intensityd.py +67 -0
  624. tests/transforms/test_rand_simulate_low_resolution.py +83 -0
  625. tests/transforms/test_rand_simulate_low_resolutiond.py +73 -0
  626. tests/transforms/test_rand_spatial_crop.py +107 -0
  627. tests/transforms/test_rand_spatial_crop_samples.py +128 -0
  628. tests/transforms/test_rand_spatial_crop_samplesd.py +147 -0
  629. tests/transforms/test_rand_spatial_cropd.py +112 -0
  630. tests/transforms/test_rand_std_shift_intensity.py +43 -0
  631. tests/transforms/test_rand_std_shift_intensityd.py +38 -0
  632. tests/transforms/test_rand_zoom.py +105 -0
  633. tests/transforms/test_rand_zoomd.py +108 -0
  634. tests/transforms/test_randidentity.py +49 -0
  635. tests/transforms/test_random_order.py +144 -0
  636. tests/transforms/test_randtorchvisiond.py +65 -0
  637. tests/transforms/test_regularization.py +139 -0
  638. tests/transforms/test_remove_repeated_channel.py +34 -0
  639. tests/transforms/test_remove_repeated_channeld.py +44 -0
  640. tests/transforms/test_repeat_channel.py +34 -0
  641. tests/transforms/test_repeat_channeld.py +41 -0
  642. tests/transforms/test_resample_backends.py +65 -0
  643. tests/transforms/test_resample_to_match.py +110 -0
  644. tests/transforms/test_resample_to_matchd.py +93 -0
  645. tests/transforms/test_resampler.py +165 -0
  646. tests/transforms/test_resize.py +140 -0
  647. tests/transforms/test_resize_with_pad_or_crop.py +91 -0
  648. tests/transforms/test_resize_with_pad_or_cropd.py +86 -0
  649. tests/transforms/test_resized.py +163 -0
  650. tests/transforms/test_rotate.py +160 -0
  651. tests/transforms/test_rotate90.py +212 -0
  652. tests/transforms/test_rotate90d.py +106 -0
  653. tests/transforms/test_rotated.py +179 -0
  654. tests/transforms/test_save_classificationd.py +109 -0
  655. tests/transforms/test_save_image.py +80 -0
  656. tests/transforms/test_save_imaged.py +130 -0
  657. tests/transforms/test_savitzky_golay_smooth.py +73 -0
  658. tests/transforms/test_savitzky_golay_smoothd.py +73 -0
  659. tests/transforms/test_scale_intensity.py +76 -0
  660. tests/transforms/test_scale_intensity_fixed_mean.py +94 -0
  661. tests/transforms/test_scale_intensity_range.py +41 -0
  662. tests/transforms/test_scale_intensity_ranged.py +40 -0
  663. tests/transforms/test_scale_intensityd.py +57 -0
  664. tests/transforms/test_select_itemsd.py +41 -0
  665. tests/transforms/test_shift_intensity.py +31 -0
  666. tests/transforms/test_shift_intensityd.py +44 -0
  667. tests/transforms/test_signal_continuouswavelet.py +44 -0
  668. tests/transforms/test_signal_fillempty.py +52 -0
  669. tests/transforms/test_signal_fillemptyd.py +60 -0
  670. tests/transforms/test_signal_rand_add_gaussiannoise.py +50 -0
  671. tests/transforms/test_signal_rand_add_sine.py +52 -0
  672. tests/transforms/test_signal_rand_add_sine_partial.py +50 -0
  673. tests/transforms/test_signal_rand_add_squarepulse.py +58 -0
  674. tests/transforms/test_signal_rand_add_squarepulse_partial.py +62 -0
  675. tests/transforms/test_signal_rand_drop.py +50 -0
  676. tests/transforms/test_signal_rand_scale.py +52 -0
  677. tests/transforms/test_signal_rand_shift.py +55 -0
  678. tests/transforms/test_signal_remove_frequency.py +71 -0
  679. tests/transforms/test_smooth_field.py +177 -0
  680. tests/transforms/test_sobel_gradient.py +189 -0
  681. tests/transforms/test_sobel_gradientd.py +212 -0
  682. tests/transforms/test_spacing.py +381 -0
  683. tests/transforms/test_spacingd.py +178 -0
  684. tests/transforms/test_spatial_crop.py +82 -0
  685. tests/transforms/test_spatial_cropd.py +74 -0
  686. tests/transforms/test_spatial_pad.py +57 -0
  687. tests/transforms/test_spatial_padd.py +43 -0
  688. tests/transforms/test_spatial_resample.py +235 -0
  689. tests/transforms/test_squeezedim.py +62 -0
  690. tests/transforms/test_squeezedimd.py +98 -0
  691. tests/transforms/test_std_shift_intensity.py +76 -0
  692. tests/transforms/test_std_shift_intensityd.py +74 -0
  693. tests/transforms/test_threshold_intensity.py +38 -0
  694. tests/transforms/test_threshold_intensityd.py +58 -0
  695. tests/transforms/test_to_contiguous.py +47 -0
  696. tests/transforms/test_to_cupy.py +112 -0
  697. tests/transforms/test_to_cupyd.py +76 -0
  698. tests/transforms/test_to_device.py +42 -0
  699. tests/transforms/test_to_deviced.py +37 -0
  700. tests/transforms/test_to_numpy.py +85 -0
  701. tests/transforms/test_to_numpyd.py +68 -0
  702. tests/transforms/test_to_pil.py +52 -0
  703. tests/transforms/test_to_pild.py +50 -0
  704. tests/transforms/test_to_tensor.py +60 -0
  705. tests/transforms/test_to_tensord.py +71 -0
  706. tests/transforms/test_torchvision.py +66 -0
  707. tests/transforms/test_torchvisiond.py +63 -0
  708. tests/transforms/test_transform.py +62 -0
  709. tests/transforms/test_transpose.py +41 -0
  710. tests/transforms/test_transposed.py +52 -0
  711. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  712. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  713. tests/transforms/test_vote_ensemble.py +84 -0
  714. tests/transforms/test_vote_ensembled.py +107 -0
  715. tests/transforms/test_with_allow_missing_keys.py +76 -0
  716. tests/transforms/test_zoom.py +120 -0
  717. tests/transforms/test_zoomd.py +94 -0
  718. tests/transforms/transform/__init__.py +10 -0
  719. tests/transforms/transform/test_randomizable.py +52 -0
  720. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  721. tests/transforms/utility/__init__.py +10 -0
  722. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  723. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  724. tests/transforms/utility/test_identity.py +29 -0
  725. tests/transforms/utility/test_identityd.py +30 -0
  726. tests/transforms/utility/test_lambda.py +71 -0
  727. tests/transforms/utility/test_lambdad.py +83 -0
  728. tests/transforms/utility/test_rand_lambda.py +87 -0
  729. tests/transforms/utility/test_rand_lambdad.py +77 -0
  730. tests/transforms/utility/test_simulatedelay.py +36 -0
  731. tests/transforms/utility/test_simulatedelayd.py +36 -0
  732. tests/transforms/utility/test_splitdim.py +52 -0
  733. tests/transforms/utility/test_splitdimd.py +96 -0
  734. tests/transforms/utils/__init__.py +10 -0
  735. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  736. tests/transforms/utils/test_get_unique_labels.py +45 -0
  737. tests/transforms/utils/test_print_transform_backends.py +29 -0
  738. tests/transforms/utils/test_soft_clip.py +125 -0
  739. tests/utils/__init__.py +10 -0
  740. tests/utils/enums/__init__.py +10 -0
  741. tests/utils/enums/test_hovernet_loss.py +190 -0
  742. tests/utils/enums/test_ordering.py +289 -0
  743. tests/utils/enums/test_wsireader.py +663 -0
  744. tests/utils/misc/__init__.py +10 -0
  745. tests/utils/misc/test_ensure_tuple.py +53 -0
  746. tests/utils/misc/test_monai_env_vars.py +44 -0
  747. tests/utils/misc/test_monai_utils_misc.py +103 -0
  748. tests/utils/misc/test_str2bool.py +34 -0
  749. tests/utils/misc/test_str2list.py +33 -0
  750. tests/utils/test_alias.py +44 -0
  751. tests/utils/test_component_store.py +73 -0
  752. tests/utils/test_deprecated.py +455 -0
  753. tests/utils/test_enum_bound_interp.py +75 -0
  754. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  755. tests/utils/test_get_package_version.py +34 -0
  756. tests/utils/test_handler_logfile.py +84 -0
  757. tests/utils/test_handler_metric_logger.py +62 -0
  758. tests/utils/test_list_to_dict.py +43 -0
  759. tests/utils/test_look_up_option.py +87 -0
  760. tests/utils/test_optional_import.py +80 -0
  761. tests/utils/test_pad_mode.py +39 -0
  762. tests/utils/test_profiling.py +208 -0
  763. tests/utils/test_rankfilter_dist.py +77 -0
  764. tests/utils/test_require_pkg.py +83 -0
  765. tests/utils/test_sample_slices.py +43 -0
  766. tests/utils/test_set_determinism.py +74 -0
  767. tests/utils/test_squeeze_unsqueeze.py +71 -0
  768. tests/utils/test_state_cacher.py +67 -0
  769. tests/utils/test_torchscript_utils.py +113 -0
  770. tests/utils/test_version.py +91 -0
  771. tests/utils/test_version_after.py +65 -0
  772. tests/utils/type_conversion/__init__.py +10 -0
  773. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  774. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  775. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  776. tests/visualize/__init__.py +10 -0
  777. tests/visualize/test_img2tensorboard.py +46 -0
  778. tests/visualize/test_occlusion_sensitivity.py +128 -0
  779. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  780. tests/visualize/test_vis_cam.py +98 -0
  781. tests/visualize/test_vis_gradcam.py +211 -0
  782. tests/visualize/utils/__init__.py +10 -0
  783. tests/visualize/utils/test_blend_images.py +63 -0
  784. tests/visualize/utils/test_matshow3d.py +133 -0
  785. monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
  786. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
  787. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
@@ -0,0 +1,179 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.networks import eval_mode
20
+ from monai.networks.nets import MultiScalePatchDiscriminator, PatchDiscriminator
21
+ from tests.test_utils import test_script_save
22
+
23
+ TEST_PATCHGAN = [
24
+ [
25
+ {
26
+ "num_layers_d": 3,
27
+ "spatial_dims": 2,
28
+ "channels": 8,
29
+ "in_channels": 3,
30
+ "out_channels": 1,
31
+ "kernel_size": 3,
32
+ "activation": "LEAKYRELU",
33
+ "norm": "instance",
34
+ "bias": False,
35
+ "dropout": 0.1,
36
+ },
37
+ torch.rand([1, 3, 256, 512]),
38
+ (1, 8, 128, 256),
39
+ (1, 1, 32, 64),
40
+ ],
41
+ [
42
+ {
43
+ "num_layers_d": 3,
44
+ "spatial_dims": 3,
45
+ "channels": 8,
46
+ "in_channels": 3,
47
+ "out_channels": 1,
48
+ "kernel_size": 3,
49
+ "activation": "LEAKYRELU",
50
+ "norm": "instance",
51
+ "bias": False,
52
+ "dropout": 0.1,
53
+ },
54
+ torch.rand([1, 3, 256, 512, 256]),
55
+ (1, 8, 128, 256, 128),
56
+ (1, 1, 32, 64, 32),
57
+ ],
58
+ ]
59
+
60
+ TEST_MULTISCALE_PATCHGAN = [
61
+ [
62
+ {
63
+ "num_d": 2,
64
+ "num_layers_d": 3,
65
+ "spatial_dims": 2,
66
+ "channels": 8,
67
+ "in_channels": 3,
68
+ "out_channels": 1,
69
+ "kernel_size": 3,
70
+ "activation": "LEAKYRELU",
71
+ "norm": "instance",
72
+ "bias": False,
73
+ "dropout": 0.1,
74
+ "minimum_size_im": 256,
75
+ },
76
+ torch.rand([1, 3, 256, 512]),
77
+ [(1, 1, 32, 64), (1, 1, 4, 8)],
78
+ [4, 7],
79
+ ],
80
+ [
81
+ {
82
+ "num_d": 2,
83
+ "num_layers_d": 3,
84
+ "spatial_dims": 3,
85
+ "channels": 8,
86
+ "in_channels": 3,
87
+ "out_channels": 1,
88
+ "kernel_size": 3,
89
+ "activation": "LEAKYRELU",
90
+ "norm": "instance",
91
+ "bias": False,
92
+ "dropout": 0.1,
93
+ "minimum_size_im": 256,
94
+ },
95
+ torch.rand([1, 3, 256, 512, 256]),
96
+ [(1, 1, 32, 64, 32), (1, 1, 4, 8, 4)],
97
+ [4, 7],
98
+ ],
99
+ ]
100
+ TEST_TOO_SMALL_SIZE = [
101
+ {
102
+ "num_d": 2,
103
+ "num_layers_d": 6,
104
+ "spatial_dims": 2,
105
+ "channels": 8,
106
+ "in_channels": 3,
107
+ "out_channels": 1,
108
+ "kernel_size": 3,
109
+ "activation": "LEAKYRELU",
110
+ "norm": "instance",
111
+ "bias": False,
112
+ "dropout": 0.1,
113
+ "minimum_size_im": 256,
114
+ }
115
+ ]
116
+
117
+
118
+ class TestPatchGAN(unittest.TestCase):
119
+ @parameterized.expand(TEST_PATCHGAN)
120
+ def test_shape(self, input_param, input_data, expected_shape_feature, expected_shape_output):
121
+ net = PatchDiscriminator(**input_param)
122
+ with eval_mode(net):
123
+ result = net.forward(input_data)
124
+ self.assertEqual(tuple(result[0].shape), expected_shape_feature)
125
+ self.assertEqual(tuple(result[-1].shape), expected_shape_output)
126
+
127
+ def test_script(self):
128
+ net = PatchDiscriminator(
129
+ num_layers_d=3,
130
+ spatial_dims=2,
131
+ channels=8,
132
+ in_channels=3,
133
+ out_channels=1,
134
+ kernel_size=3,
135
+ activation="LEAKYRELU",
136
+ norm="instance",
137
+ bias=False,
138
+ dropout=0.1,
139
+ )
140
+ i = torch.rand([1, 3, 256, 512])
141
+ test_script_save(net, i)
142
+
143
+
144
+ class TestMultiscalePatchGAN(unittest.TestCase):
145
+ @parameterized.expand(TEST_MULTISCALE_PATCHGAN)
146
+ def test_shape(self, input_param, input_data, expected_shape, features_lengths=None):
147
+ net = MultiScalePatchDiscriminator(**input_param)
148
+ with eval_mode(net):
149
+ result, features = net.forward(input_data)
150
+ for r_ind, r in enumerate(result):
151
+ self.assertEqual(tuple(r.shape), expected_shape[r_ind])
152
+ for o_d_ind, o_d in enumerate(features):
153
+ self.assertEqual(len(o_d), features_lengths[o_d_ind])
154
+
155
+ def test_too_small_shape(self):
156
+ with self.assertRaises(AssertionError):
157
+ MultiScalePatchDiscriminator(**TEST_TOO_SMALL_SIZE[0])
158
+
159
+ def test_script(self):
160
+ net = MultiScalePatchDiscriminator(
161
+ num_d=2,
162
+ num_layers_d=3,
163
+ spatial_dims=2,
164
+ channels=8,
165
+ in_channels=3,
166
+ out_channels=1,
167
+ kernel_size=3,
168
+ activation="LEAKYRELU",
169
+ norm="instance",
170
+ bias=False,
171
+ dropout=0.1,
172
+ minimum_size_im=256,
173
+ )
174
+ i = torch.rand([1, 3, 256, 512])
175
+ test_script_save(net, i)
176
+
177
+
178
+ if __name__ == "__main__":
179
+ unittest.main()
@@ -0,0 +1,57 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.networks import eval_mode
20
+ from monai.networks.nets import Quicknat
21
+ from monai.utils import optional_import
22
+ from tests.test_utils import test_script_save
23
+
24
+ _, has_se = optional_import("squeeze_and_excitation")
25
+
26
+ TEST_CASES = [
27
+ # params, input_shape, expected_shape
28
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 1, "se_block": None}, (1, 1, 32, 32), (1, 1, 32, 32)],
29
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 4, "se_block": None}, (1, 1, 64, 64), (1, 1, 64, 64)],
30
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 128, 128), (1, 1, 128, 128)],
31
+ [{"num_classes": 4, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 32, 32), (1, 4, 32, 32)],
32
+ [{"num_classes": 33, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 32, 32), (1, 33, 32, 32)],
33
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "CSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
34
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "SSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
35
+ [{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "CSSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
36
+ ]
37
+
38
+
39
+ @unittest.skipUnless(has_se, "squeeze_and_excitation not installed")
40
+ class TestQuicknat(unittest.TestCase):
41
+ @parameterized.expand(TEST_CASES)
42
+ def test_shape(self, input_param, input_shape, expected_shape):
43
+ device = "cuda" if torch.cuda.is_available() else "cpu"
44
+ print(input_param)
45
+ net = Quicknat(**input_param).to(device)
46
+ with eval_mode(net):
47
+ result = net(torch.randn(input_shape).to(device))
48
+ self.assertEqual(result.shape, expected_shape)
49
+
50
+ def test_script(self):
51
+ net = Quicknat(num_classes=1, num_channels=1)
52
+ test_data = torch.randn(16, 1, 32, 32)
53
+ test_script_save(net, test_data)
54
+
55
+
56
+ if __name__ == "__main__":
57
+ unittest.main()
@@ -0,0 +1,340 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import copy
15
+ import os
16
+ import re
17
+ import sys
18
+ import unittest
19
+ from typing import TYPE_CHECKING
20
+
21
+ import torch
22
+ from parameterized import parameterized
23
+
24
+ from monai.networks import eval_mode
25
+ from monai.networks.nets import (
26
+ ResNet,
27
+ ResNetFeatures,
28
+ get_medicalnet_pretrained_resnet_args,
29
+ get_pretrained_resnet_medicalnet,
30
+ resnet10,
31
+ resnet18,
32
+ resnet34,
33
+ resnet50,
34
+ resnet101,
35
+ resnet152,
36
+ resnet200,
37
+ )
38
+ from monai.networks.nets.resnet import ResNetBlock
39
+ from monai.utils import optional_import
40
+ from tests.test_utils import (
41
+ SkipIfNoModule,
42
+ equal_state_dict,
43
+ skip_if_downloading_fails,
44
+ skip_if_no_cuda,
45
+ skip_if_quick,
46
+ test_script_save,
47
+ )
48
+
49
+ if TYPE_CHECKING:
50
+ import torchvision
51
+
52
+ has_torchvision = True
53
+ else:
54
+ torchvision, has_torchvision = optional_import("torchvision")
55
+
56
+ has_hf_modules = "huggingface_hub" in sys.modules and "huggingface_hub.utils._errors" in sys.modules
57
+
58
+ # from torchvision.models import ResNet50_Weights, resnet50
59
+
60
+ device = "cuda" if torch.cuda.is_available() else "cpu"
61
+
62
+ TEST_CASE_1 = [ # 3D, batch 3, 2 input channel
63
+ {
64
+ "pretrained": False,
65
+ "spatial_dims": 3,
66
+ "n_input_channels": 2,
67
+ "num_classes": 3,
68
+ "conv1_t_size": 7,
69
+ "conv1_t_stride": (2, 2, 2),
70
+ },
71
+ (3, 2, 32, 64, 48),
72
+ (3, 3),
73
+ ]
74
+
75
+ TEST_CASE_2 = [ # 2D, batch 2, 1 input channel
76
+ {
77
+ "pretrained": False,
78
+ "spatial_dims": 2,
79
+ "n_input_channels": 1,
80
+ "num_classes": 3,
81
+ "conv1_t_size": [7, 7],
82
+ "conv1_t_stride": [2, 2],
83
+ },
84
+ (2, 1, 32, 64),
85
+ (2, 3),
86
+ ]
87
+
88
+ TEST_CASE_2_A = [ # 2D, batch 2, 1 input channel, shortcut type A
89
+ {
90
+ "pretrained": False,
91
+ "spatial_dims": 2,
92
+ "n_input_channels": 1,
93
+ "num_classes": 3,
94
+ "shortcut_type": "A",
95
+ "conv1_t_size": (7, 7),
96
+ "conv1_t_stride": 2,
97
+ },
98
+ (2, 1, 32, 64),
99
+ (2, 3),
100
+ ]
101
+
102
+ TEST_CASE_3 = [ # 1D, batch 1, 2 input channels
103
+ {
104
+ "pretrained": False,
105
+ "spatial_dims": 1,
106
+ "n_input_channels": 2,
107
+ "num_classes": 3,
108
+ "conv1_t_size": [3],
109
+ "conv1_t_stride": 1,
110
+ "act": ("relu", {"inplace": False}),
111
+ },
112
+ (1, 2, 32),
113
+ (1, 3),
114
+ ]
115
+
116
+ TEST_CASE_3_A = [ # 1D, batch 1, 2 input channels
117
+ {"pretrained": False, "spatial_dims": 1, "n_input_channels": 2, "num_classes": 3, "shortcut_type": "A"},
118
+ (1, 2, 32),
119
+ (1, 3),
120
+ ]
121
+
122
+ TEST_CASE_4 = [ # 2D, batch 2, 1 input channel
123
+ {"pretrained": False, "spatial_dims": 2, "n_input_channels": 1, "num_classes": 3, "feed_forward": False},
124
+ (2, 1, 32, 64),
125
+ ((2, 512), (2, 2048)),
126
+ ]
127
+
128
+ TEST_CASE_5 = [ # 1D, batch 1, 2 input channels
129
+ {
130
+ "block": "basic",
131
+ "layers": [1, 1, 1, 1],
132
+ "block_inplanes": [64, 128, 256, 512],
133
+ "spatial_dims": 1,
134
+ "n_input_channels": 2,
135
+ "num_classes": 3,
136
+ "conv1_t_size": [3],
137
+ "conv1_t_stride": 1,
138
+ },
139
+ (1, 2, 32),
140
+ (1, 3),
141
+ ]
142
+
143
+ TEST_CASE_5_A = [ # 1D, batch 1, 2 input channels
144
+ {
145
+ "block": ResNetBlock,
146
+ "layers": [1, 1, 1, 1],
147
+ "block_inplanes": [64, 128, 256, 512],
148
+ "spatial_dims": 1,
149
+ "n_input_channels": 2,
150
+ "num_classes": 3,
151
+ "conv1_t_size": [3],
152
+ "conv1_t_stride": 1,
153
+ },
154
+ (1, 2, 32),
155
+ (1, 3),
156
+ ]
157
+
158
+ TEST_CASE_6 = [ # 1D, batch 1, 2 input channels
159
+ {
160
+ "block": "bottleneck",
161
+ "layers": [3, 4, 6, 3],
162
+ "block_inplanes": [64, 128, 256, 512],
163
+ "spatial_dims": 1,
164
+ "n_input_channels": 2,
165
+ "num_classes": 3,
166
+ "conv1_t_size": [3],
167
+ "conv1_t_stride": 1,
168
+ },
169
+ (1, 2, 32),
170
+ (1, 3),
171
+ ]
172
+
173
+ TEST_CASE_7 = [ # 1D, batch 1, 2 input channels, bias_downsample
174
+ {
175
+ "block": "bottleneck",
176
+ "layers": [3, 4, 6, 3],
177
+ "block_inplanes": [64, 128, 256, 512],
178
+ "spatial_dims": 1,
179
+ "n_input_channels": 2,
180
+ "num_classes": 3,
181
+ "conv1_t_size": [3],
182
+ "conv1_t_stride": 1,
183
+ "bias_downsample": False, # set to False if pretrained=True (PR #5477)
184
+ },
185
+ (1, 2, 32),
186
+ (1, 3),
187
+ ]
188
+
189
+ TEST_CASE_8 = [
190
+ {
191
+ "block": "bottleneck",
192
+ "layers": [3, 4, 6, 3],
193
+ "block_inplanes": [64, 128, 256, 512],
194
+ "spatial_dims": 1,
195
+ "n_input_channels": 2,
196
+ "num_classes": 3,
197
+ "conv1_t_size": [3],
198
+ "conv1_t_stride": 1,
199
+ "act": ("relu", {"inplace": False}),
200
+ },
201
+ (1, 2, 32),
202
+ (1, 3),
203
+ ]
204
+
205
+ TEST_CASE_9 = [ # Layer norm
206
+ {
207
+ "block": ResNetBlock,
208
+ "layers": [3, 4, 6, 3],
209
+ "block_inplanes": [64, 128, 256, 512],
210
+ "spatial_dims": 1,
211
+ "n_input_channels": 2,
212
+ "num_classes": 3,
213
+ "conv1_t_size": [3],
214
+ "conv1_t_stride": 1,
215
+ "act": ("relu", {"inplace": False}),
216
+ "norm": ("layer", {"normalized_shape": (64, 32)}),
217
+ },
218
+ (1, 2, 32),
219
+ (1, 3),
220
+ ]
221
+
222
+ TEST_CASES = []
223
+ PRETRAINED_TEST_CASES = []
224
+ for case in [TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_2_A, TEST_CASE_3_A]:
225
+ for model in [resnet10, resnet18, resnet34, resnet50, resnet101, resnet152, resnet200]:
226
+ TEST_CASES.append([model, *case])
227
+ PRETRAINED_TEST_CASES.append([model, *case])
228
+ for case in [TEST_CASE_5, TEST_CASE_5_A, TEST_CASE_6, TEST_CASE_7, TEST_CASE_8, TEST_CASE_9]:
229
+ TEST_CASES.append([ResNet, *case])
230
+
231
+ TEST_SCRIPT_CASES = [
232
+ [model, *TEST_CASE_1] for model in [resnet10, resnet18, resnet34, resnet50, resnet101, resnet152, resnet200]
233
+ ]
234
+
235
+ CASE_EXTRACT_FEATURES = [
236
+ (
237
+ {"model_name": "resnet10", "pretrained": True, "spatial_dims": 3, "in_channels": 1},
238
+ [1, 1, 64, 64, 64],
239
+ ([1, 64, 32, 32, 32], [1, 64, 16, 16, 16], [1, 128, 8, 8, 8], [1, 256, 4, 4, 4], [1, 512, 2, 2, 2]),
240
+ )
241
+ ]
242
+
243
+
244
+ class TestResNet(unittest.TestCase):
245
+ def setUp(self):
246
+ self.tmp_ckpt_filename = os.path.join("tests", "monai_unittest_tmp_ckpt.pth")
247
+
248
+ def tearDown(self):
249
+ if os.path.exists(self.tmp_ckpt_filename):
250
+ try:
251
+ os.remove(self.tmp_ckpt_filename)
252
+ except BaseException:
253
+ pass
254
+
255
+ @parameterized.expand(TEST_CASES)
256
+ def test_resnet_shape(self, model, input_param, input_shape, expected_shape):
257
+ net = model(**input_param).to(device)
258
+ with eval_mode(net):
259
+ result = net.forward(torch.randn(input_shape).to(device))
260
+ if input_param.get("feed_forward", True):
261
+ self.assertEqual(result.shape, expected_shape)
262
+ else:
263
+ self.assertIn(result.shape, expected_shape)
264
+
265
+ @parameterized.expand(PRETRAINED_TEST_CASES)
266
+ @skip_if_quick
267
+ @skip_if_no_cuda
268
+ def test_resnet_pretrained(self, model, input_param, _input_shape, _expected_shape):
269
+ net = model(**input_param).to(device)
270
+ # Save ckpt
271
+ torch.save(net.state_dict(), self.tmp_ckpt_filename)
272
+
273
+ cp_input_param = copy.copy(input_param)
274
+ # Custom pretrained weights
275
+ cp_input_param["pretrained"] = self.tmp_ckpt_filename
276
+ pretrained_net = model(**cp_input_param)
277
+ equal_state_dict(net.state_dict(), pretrained_net.state_dict())
278
+
279
+ if has_hf_modules:
280
+ # True flag
281
+ cp_input_param["pretrained"] = True
282
+ resnet_depth = int(re.search(r"resnet(\d+)", model.__name__).group(1))
283
+
284
+ bias_downsample, shortcut_type = get_medicalnet_pretrained_resnet_args(resnet_depth)
285
+
286
+ # With orig. test cases
287
+ if (
288
+ input_param.get("spatial_dims", 3) == 3
289
+ and input_param.get("n_input_channels", 3) == 1
290
+ and input_param.get("feed_forward", True) is False
291
+ and input_param.get("shortcut_type", "B") == shortcut_type
292
+ and (input_param.get("bias_downsample", True) == bias_downsample)
293
+ ):
294
+ model(**cp_input_param)
295
+ else:
296
+ with self.assertRaises(NotImplementedError):
297
+ model(**cp_input_param)
298
+
299
+ # forcing MedicalNet pretrained download for 3D tests cases
300
+ cp_input_param["n_input_channels"] = 1
301
+ cp_input_param["feed_forward"] = False
302
+ cp_input_param["shortcut_type"] = shortcut_type
303
+ cp_input_param["bias_downsample"] = bias_downsample
304
+ if cp_input_param.get("spatial_dims", 3) == 3:
305
+ with skip_if_downloading_fails():
306
+ pretrained_net = model(**cp_input_param).to(device)
307
+ medicalnet_state_dict = get_pretrained_resnet_medicalnet(resnet_depth, device=device)
308
+ medicalnet_state_dict = {
309
+ key.replace("module.", ""): value for key, value in medicalnet_state_dict.items()
310
+ }
311
+ equal_state_dict(pretrained_net.state_dict(), medicalnet_state_dict)
312
+
313
+ @parameterized.expand(TEST_SCRIPT_CASES)
314
+ def test_script(self, model, input_param, input_shape, expected_shape):
315
+ net = model(**input_param)
316
+ test_data = torch.randn(input_shape)
317
+ test_script_save(net, test_data)
318
+
319
+
320
+ @SkipIfNoModule("hf_hub_download")
321
+ class TestExtractFeatures(unittest.TestCase):
322
+ @parameterized.expand(CASE_EXTRACT_FEATURES)
323
+ def test_shape(self, input_param, input_shape, expected_shapes):
324
+ device = "cuda" if torch.cuda.is_available() else "cpu"
325
+
326
+ with skip_if_downloading_fails():
327
+ net = ResNetFeatures(**input_param).to(device)
328
+
329
+ # run inference with random tensor
330
+ with eval_mode(net):
331
+ features = net(torch.randn(input_shape).to(device))
332
+
333
+ # check output shape
334
+ self.assertEqual(len(features), len(expected_shapes))
335
+ for feature, expected_shape in zip(features, expected_shapes):
336
+ self.assertEqual(feature.shape, torch.Size(expected_shape))
337
+
338
+
339
+ if __name__ == "__main__":
340
+ unittest.main()
@@ -0,0 +1,120 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import torch
17
+ from parameterized import parameterized
18
+
19
+ from monai.networks import eval_mode
20
+ from monai.networks.nets import SegResNet, SegResNetVAE
21
+ from monai.utils import UpsampleMode
22
+ from tests.test_utils import test_script_save
23
+
24
+ device = "cuda" if torch.cuda.is_available() else "cpu"
25
+
26
+ TEST_CASE_SEGRESNET = []
27
+ for spatial_dims in range(2, 4):
28
+ for init_filters in [8, 16]:
29
+ for dropout_prob in [None, 0.2]:
30
+ for norm in [("GROUP", {"num_groups": 8}), ("batch", {"track_running_stats": False}), "instance"]:
31
+ for upsample_mode in UpsampleMode:
32
+ test_case = [
33
+ {
34
+ "spatial_dims": spatial_dims,
35
+ "init_filters": init_filters,
36
+ "dropout_prob": dropout_prob,
37
+ "norm": norm,
38
+ "upsample_mode": upsample_mode,
39
+ "use_conv_final": False,
40
+ },
41
+ (2, 1, *([16] * spatial_dims)),
42
+ (2, init_filters, *([16] * spatial_dims)),
43
+ ]
44
+ TEST_CASE_SEGRESNET.append(test_case)
45
+
46
+ TEST_CASE_SEGRESNET_2 = []
47
+ for spatial_dims in range(2, 4):
48
+ for init_filters in [8, 16]:
49
+ for out_channels in range(1, 3):
50
+ for upsample_mode in UpsampleMode:
51
+ test_case = [
52
+ {
53
+ "spatial_dims": spatial_dims,
54
+ "init_filters": init_filters,
55
+ "out_channels": out_channels,
56
+ "upsample_mode": upsample_mode,
57
+ },
58
+ (2, 1, *([16] * spatial_dims)),
59
+ (2, out_channels, *([16] * spatial_dims)),
60
+ ]
61
+ TEST_CASE_SEGRESNET_2.append(test_case)
62
+
63
+ TEST_CASE_SEGRESNET_VAE = []
64
+ for spatial_dims in range(2, 4):
65
+ for init_filters in [8, 16]:
66
+ for out_channels in range(1, 3):
67
+ for upsample_mode in UpsampleMode:
68
+ for vae_estimate_std in [True, False]:
69
+ test_case = [
70
+ {
71
+ "spatial_dims": spatial_dims,
72
+ "init_filters": init_filters,
73
+ "out_channels": out_channels,
74
+ "upsample_mode": upsample_mode,
75
+ "act": ("leakyrelu", {"inplace": True, "negative_slope": 0.01}),
76
+ "input_image_size": ([16] * spatial_dims),
77
+ "vae_estimate_std": vae_estimate_std,
78
+ },
79
+ (2, 1, *([16] * spatial_dims)),
80
+ (2, out_channels, *([16] * spatial_dims)),
81
+ ]
82
+ TEST_CASE_SEGRESNET_VAE.append(test_case)
83
+
84
+
85
+ class TestResNet(unittest.TestCase):
86
+ @parameterized.expand(TEST_CASE_SEGRESNET + TEST_CASE_SEGRESNET_2)
87
+ def test_shape(self, input_param, input_shape, expected_shape):
88
+ net = SegResNet(**input_param).to(device)
89
+ with eval_mode(net):
90
+ result = net(torch.randn(input_shape).to(device))
91
+ self.assertEqual(result.shape, expected_shape)
92
+
93
+ def test_ill_arg(self):
94
+ with self.assertRaises(ValueError):
95
+ SegResNet(spatial_dims=4)
96
+
97
+ def test_script(self):
98
+ input_param, input_shape, expected_shape = TEST_CASE_SEGRESNET[0]
99
+ net = SegResNet(**input_param)
100
+ test_data = torch.randn(input_shape)
101
+ test_script_save(net, test_data)
102
+
103
+
104
+ class TestResNetVAE(unittest.TestCase):
105
+ @parameterized.expand(TEST_CASE_SEGRESNET_VAE)
106
+ def test_vae_shape(self, input_param, input_shape, expected_shape):
107
+ net = SegResNetVAE(**input_param).to(device)
108
+ with eval_mode(net):
109
+ result, _ = net(torch.randn(input_shape).to(device))
110
+ self.assertEqual(result.shape, expected_shape)
111
+
112
+ def test_script(self):
113
+ input_param, input_shape, expected_shape = TEST_CASE_SEGRESNET_VAE[0]
114
+ net = SegResNetVAE(**input_param)
115
+ test_data = torch.randn(input_shape)
116
+ test_script_save(net, test_data)
117
+
118
+
119
+ if __name__ == "__main__":
120
+ unittest.main()