monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/handlers/__init__.py +1 -0
- monai/handlers/average_precision.py +53 -0
- monai/inferers/inferer.py +10 -7
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/metrics/__init__.py +1 -0
- monai/metrics/average_precision.py +187 -0
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utility/array.py +2 -12
- monai/transforms/utils.py +1 -2
- monai/transforms/utils_pytorch_numpy_unification.py +2 -4
- monai/utils/enums.py +3 -2
- monai/utils/module.py +6 -6
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
- monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_average_precision.py +79 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1388 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +884 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_average_precision.py +162 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
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- tests/utils/misc/test_str2list.py +33 -0
- tests/utils/test_alias.py +44 -0
- tests/utils/test_component_store.py +73 -0
- tests/utils/test_deprecated.py +455 -0
- tests/utils/test_enum_bound_interp.py +75 -0
- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.nets import MultiScalePatchDiscriminator, PatchDiscriminator
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from tests.test_utils import test_script_save
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TEST_PATCHGAN = [
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[
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{
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"num_layers_d": 3,
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"spatial_dims": 2,
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"channels": 8,
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"in_channels": 3,
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"out_channels": 1,
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"kernel_size": 3,
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"activation": "LEAKYRELU",
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"norm": "instance",
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"bias": False,
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"dropout": 0.1,
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},
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torch.rand([1, 3, 256, 512]),
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(1, 8, 128, 256),
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(1, 1, 32, 64),
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],
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[
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{
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"num_layers_d": 3,
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"spatial_dims": 3,
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"channels": 8,
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"in_channels": 3,
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"out_channels": 1,
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"kernel_size": 3,
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"activation": "LEAKYRELU",
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"norm": "instance",
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"bias": False,
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"dropout": 0.1,
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},
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torch.rand([1, 3, 256, 512, 256]),
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(1, 8, 128, 256, 128),
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(1, 1, 32, 64, 32),
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],
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]
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TEST_MULTISCALE_PATCHGAN = [
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[
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{
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"num_d": 2,
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"num_layers_d": 3,
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"spatial_dims": 2,
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"channels": 8,
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"in_channels": 3,
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"out_channels": 1,
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"kernel_size": 3,
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"activation": "LEAKYRELU",
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"norm": "instance",
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"bias": False,
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"dropout": 0.1,
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"minimum_size_im": 256,
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},
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torch.rand([1, 3, 256, 512]),
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[(1, 1, 32, 64), (1, 1, 4, 8)],
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[4, 7],
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],
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[
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{
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"num_d": 2,
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"num_layers_d": 3,
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"spatial_dims": 3,
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"channels": 8,
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"in_channels": 3,
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"out_channels": 1,
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"kernel_size": 3,
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"activation": "LEAKYRELU",
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"norm": "instance",
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"bias": False,
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"dropout": 0.1,
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"minimum_size_im": 256,
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},
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torch.rand([1, 3, 256, 512, 256]),
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[(1, 1, 32, 64, 32), (1, 1, 4, 8, 4)],
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[4, 7],
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],
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]
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TEST_TOO_SMALL_SIZE = [
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{
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"num_d": 2,
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"num_layers_d": 6,
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"spatial_dims": 2,
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"channels": 8,
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"in_channels": 3,
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"out_channels": 1,
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"kernel_size": 3,
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"activation": "LEAKYRELU",
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"norm": "instance",
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"bias": False,
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"dropout": 0.1,
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"minimum_size_im": 256,
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}
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]
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class TestPatchGAN(unittest.TestCase):
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@parameterized.expand(TEST_PATCHGAN)
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def test_shape(self, input_param, input_data, expected_shape_feature, expected_shape_output):
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net = PatchDiscriminator(**input_param)
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with eval_mode(net):
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result = net.forward(input_data)
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self.assertEqual(tuple(result[0].shape), expected_shape_feature)
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self.assertEqual(tuple(result[-1].shape), expected_shape_output)
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def test_script(self):
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net = PatchDiscriminator(
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num_layers_d=3,
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spatial_dims=2,
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channels=8,
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in_channels=3,
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out_channels=1,
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kernel_size=3,
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activation="LEAKYRELU",
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norm="instance",
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bias=False,
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dropout=0.1,
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)
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i = torch.rand([1, 3, 256, 512])
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test_script_save(net, i)
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class TestMultiscalePatchGAN(unittest.TestCase):
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@parameterized.expand(TEST_MULTISCALE_PATCHGAN)
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def test_shape(self, input_param, input_data, expected_shape, features_lengths=None):
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net = MultiScalePatchDiscriminator(**input_param)
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with eval_mode(net):
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result, features = net.forward(input_data)
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for r_ind, r in enumerate(result):
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self.assertEqual(tuple(r.shape), expected_shape[r_ind])
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for o_d_ind, o_d in enumerate(features):
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self.assertEqual(len(o_d), features_lengths[o_d_ind])
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def test_too_small_shape(self):
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with self.assertRaises(AssertionError):
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MultiScalePatchDiscriminator(**TEST_TOO_SMALL_SIZE[0])
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def test_script(self):
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net = MultiScalePatchDiscriminator(
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num_d=2,
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num_layers_d=3,
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spatial_dims=2,
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channels=8,
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in_channels=3,
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out_channels=1,
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kernel_size=3,
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activation="LEAKYRELU",
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norm="instance",
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bias=False,
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dropout=0.1,
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minimum_size_im=256,
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)
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i = torch.rand([1, 3, 256, 512])
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test_script_save(net, i)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.nets import Quicknat
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from monai.utils import optional_import
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from tests.test_utils import test_script_save
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_, has_se = optional_import("squeeze_and_excitation")
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TEST_CASES = [
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# params, input_shape, expected_shape
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[{"num_classes": 1, "num_channels": 1, "num_filters": 1, "se_block": None}, (1, 1, 32, 32), (1, 1, 32, 32)],
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[{"num_classes": 1, "num_channels": 1, "num_filters": 4, "se_block": None}, (1, 1, 64, 64), (1, 1, 64, 64)],
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[{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 128, 128), (1, 1, 128, 128)],
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[{"num_classes": 4, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 32, 32), (1, 4, 32, 32)],
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[{"num_classes": 33, "num_channels": 1, "num_filters": 64, "se_block": None}, (1, 1, 32, 32), (1, 33, 32, 32)],
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[{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "CSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
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[{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "SSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
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[{"num_classes": 1, "num_channels": 1, "num_filters": 64, "se_block": "CSSE"}, (1, 1, 32, 32), (1, 1, 32, 32)],
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]
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@unittest.skipUnless(has_se, "squeeze_and_excitation not installed")
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class TestQuicknat(unittest.TestCase):
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@parameterized.expand(TEST_CASES)
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def test_shape(self, input_param, input_shape, expected_shape):
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device = "cuda" if torch.cuda.is_available() else "cpu"
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print(input_param)
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net = Quicknat(**input_param).to(device)
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with eval_mode(net):
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result = net(torch.randn(input_shape).to(device))
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self.assertEqual(result.shape, expected_shape)
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def test_script(self):
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net = Quicknat(num_classes=1, num_channels=1)
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test_data = torch.randn(16, 1, 32, 32)
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test_script_save(net, test_data)
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if __name__ == "__main__":
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unittest.main()
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import copy
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import os
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import re
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import sys
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import unittest
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from typing import TYPE_CHECKING
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import torch
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from parameterized import parameterized
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from monai.networks import eval_mode
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from monai.networks.nets import (
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ResNet,
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ResNetFeatures,
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get_medicalnet_pretrained_resnet_args,
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get_pretrained_resnet_medicalnet,
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resnet10,
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resnet18,
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resnet34,
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resnet50,
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resnet101,
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resnet152,
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resnet200,
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)
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from monai.networks.nets.resnet import ResNetBlock
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from monai.utils import optional_import
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from tests.test_utils import (
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SkipIfNoModule,
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equal_state_dict,
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skip_if_downloading_fails,
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skip_if_no_cuda,
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skip_if_quick,
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test_script_save,
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)
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if TYPE_CHECKING:
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import torchvision
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has_torchvision = True
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else:
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torchvision, has_torchvision = optional_import("torchvision")
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has_hf_modules = "huggingface_hub" in sys.modules and "huggingface_hub.utils._errors" in sys.modules
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# from torchvision.models import ResNet50_Weights, resnet50
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device = "cuda" if torch.cuda.is_available() else "cpu"
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TEST_CASE_1 = [ # 3D, batch 3, 2 input channel
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{
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"pretrained": False,
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"spatial_dims": 3,
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"n_input_channels": 2,
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"num_classes": 3,
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"conv1_t_size": 7,
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"conv1_t_stride": (2, 2, 2),
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},
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(3, 2, 32, 64, 48),
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(3, 3),
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]
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TEST_CASE_2 = [ # 2D, batch 2, 1 input channel
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{
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"pretrained": False,
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"spatial_dims": 2,
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"n_input_channels": 1,
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"num_classes": 3,
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"conv1_t_size": [7, 7],
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"conv1_t_stride": [2, 2],
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},
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(2, 1, 32, 64),
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(2, 3),
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]
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TEST_CASE_2_A = [ # 2D, batch 2, 1 input channel, shortcut type A
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{
|
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"pretrained": False,
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"spatial_dims": 2,
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"n_input_channels": 1,
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"num_classes": 3,
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"shortcut_type": "A",
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"conv1_t_size": (7, 7),
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"conv1_t_stride": 2,
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},
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(2, 1, 32, 64),
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(2, 3),
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]
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TEST_CASE_3 = [ # 1D, batch 1, 2 input channels
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{
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"pretrained": False,
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"spatial_dims": 1,
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"n_input_channels": 2,
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"num_classes": 3,
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"conv1_t_size": [3],
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"conv1_t_stride": 1,
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"act": ("relu", {"inplace": False}),
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},
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(1, 2, 32),
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(1, 3),
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]
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TEST_CASE_3_A = [ # 1D, batch 1, 2 input channels
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{"pretrained": False, "spatial_dims": 1, "n_input_channels": 2, "num_classes": 3, "shortcut_type": "A"},
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(1, 2, 32),
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(1, 3),
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]
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TEST_CASE_4 = [ # 2D, batch 2, 1 input channel
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{"pretrained": False, "spatial_dims": 2, "n_input_channels": 1, "num_classes": 3, "feed_forward": False},
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(2, 1, 32, 64),
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((2, 512), (2, 2048)),
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]
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TEST_CASE_5 = [ # 1D, batch 1, 2 input channels
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{
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"block": "basic",
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"layers": [1, 1, 1, 1],
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"block_inplanes": [64, 128, 256, 512],
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"spatial_dims": 1,
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"n_input_channels": 2,
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"num_classes": 3,
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"conv1_t_size": [3],
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"conv1_t_stride": 1,
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},
|
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(1, 2, 32),
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(1, 3),
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]
|
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+
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TEST_CASE_5_A = [ # 1D, batch 1, 2 input channels
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{
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"block": ResNetBlock,
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"layers": [1, 1, 1, 1],
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"block_inplanes": [64, 128, 256, 512],
|
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"spatial_dims": 1,
|
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"n_input_channels": 2,
|
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"num_classes": 3,
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"conv1_t_size": [3],
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"conv1_t_stride": 1,
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},
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(1, 2, 32),
|
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|
+
(1, 3),
|
156
|
+
]
|
157
|
+
|
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|
+
TEST_CASE_6 = [ # 1D, batch 1, 2 input channels
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{
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"block": "bottleneck",
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"layers": [3, 4, 6, 3],
|
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"block_inplanes": [64, 128, 256, 512],
|
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"spatial_dims": 1,
|
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+
"n_input_channels": 2,
|
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"num_classes": 3,
|
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"conv1_t_size": [3],
|
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"conv1_t_stride": 1,
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},
|
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(1, 2, 32),
|
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(1, 3),
|
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]
|
172
|
+
|
173
|
+
TEST_CASE_7 = [ # 1D, batch 1, 2 input channels, bias_downsample
|
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|
+
{
|
175
|
+
"block": "bottleneck",
|
176
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+
"layers": [3, 4, 6, 3],
|
177
|
+
"block_inplanes": [64, 128, 256, 512],
|
178
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+
"spatial_dims": 1,
|
179
|
+
"n_input_channels": 2,
|
180
|
+
"num_classes": 3,
|
181
|
+
"conv1_t_size": [3],
|
182
|
+
"conv1_t_stride": 1,
|
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|
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"bias_downsample": False, # set to False if pretrained=True (PR #5477)
|
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},
|
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+
(1, 2, 32),
|
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(1, 3),
|
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|
+
]
|
188
|
+
|
189
|
+
TEST_CASE_8 = [
|
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|
+
{
|
191
|
+
"block": "bottleneck",
|
192
|
+
"layers": [3, 4, 6, 3],
|
193
|
+
"block_inplanes": [64, 128, 256, 512],
|
194
|
+
"spatial_dims": 1,
|
195
|
+
"n_input_channels": 2,
|
196
|
+
"num_classes": 3,
|
197
|
+
"conv1_t_size": [3],
|
198
|
+
"conv1_t_stride": 1,
|
199
|
+
"act": ("relu", {"inplace": False}),
|
200
|
+
},
|
201
|
+
(1, 2, 32),
|
202
|
+
(1, 3),
|
203
|
+
]
|
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|
+
|
205
|
+
TEST_CASE_9 = [ # Layer norm
|
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|
+
{
|
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|
+
"block": ResNetBlock,
|
208
|
+
"layers": [3, 4, 6, 3],
|
209
|
+
"block_inplanes": [64, 128, 256, 512],
|
210
|
+
"spatial_dims": 1,
|
211
|
+
"n_input_channels": 2,
|
212
|
+
"num_classes": 3,
|
213
|
+
"conv1_t_size": [3],
|
214
|
+
"conv1_t_stride": 1,
|
215
|
+
"act": ("relu", {"inplace": False}),
|
216
|
+
"norm": ("layer", {"normalized_shape": (64, 32)}),
|
217
|
+
},
|
218
|
+
(1, 2, 32),
|
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|
+
(1, 3),
|
220
|
+
]
|
221
|
+
|
222
|
+
TEST_CASES = []
|
223
|
+
PRETRAINED_TEST_CASES = []
|
224
|
+
for case in [TEST_CASE_1, TEST_CASE_2, TEST_CASE_3, TEST_CASE_2_A, TEST_CASE_3_A]:
|
225
|
+
for model in [resnet10, resnet18, resnet34, resnet50, resnet101, resnet152, resnet200]:
|
226
|
+
TEST_CASES.append([model, *case])
|
227
|
+
PRETRAINED_TEST_CASES.append([model, *case])
|
228
|
+
for case in [TEST_CASE_5, TEST_CASE_5_A, TEST_CASE_6, TEST_CASE_7, TEST_CASE_8, TEST_CASE_9]:
|
229
|
+
TEST_CASES.append([ResNet, *case])
|
230
|
+
|
231
|
+
TEST_SCRIPT_CASES = [
|
232
|
+
[model, *TEST_CASE_1] for model in [resnet10, resnet18, resnet34, resnet50, resnet101, resnet152, resnet200]
|
233
|
+
]
|
234
|
+
|
235
|
+
CASE_EXTRACT_FEATURES = [
|
236
|
+
(
|
237
|
+
{"model_name": "resnet10", "pretrained": True, "spatial_dims": 3, "in_channels": 1},
|
238
|
+
[1, 1, 64, 64, 64],
|
239
|
+
([1, 64, 32, 32, 32], [1, 64, 16, 16, 16], [1, 128, 8, 8, 8], [1, 256, 4, 4, 4], [1, 512, 2, 2, 2]),
|
240
|
+
)
|
241
|
+
]
|
242
|
+
|
243
|
+
|
244
|
+
class TestResNet(unittest.TestCase):
|
245
|
+
def setUp(self):
|
246
|
+
self.tmp_ckpt_filename = os.path.join("tests", "monai_unittest_tmp_ckpt.pth")
|
247
|
+
|
248
|
+
def tearDown(self):
|
249
|
+
if os.path.exists(self.tmp_ckpt_filename):
|
250
|
+
try:
|
251
|
+
os.remove(self.tmp_ckpt_filename)
|
252
|
+
except BaseException:
|
253
|
+
pass
|
254
|
+
|
255
|
+
@parameterized.expand(TEST_CASES)
|
256
|
+
def test_resnet_shape(self, model, input_param, input_shape, expected_shape):
|
257
|
+
net = model(**input_param).to(device)
|
258
|
+
with eval_mode(net):
|
259
|
+
result = net.forward(torch.randn(input_shape).to(device))
|
260
|
+
if input_param.get("feed_forward", True):
|
261
|
+
self.assertEqual(result.shape, expected_shape)
|
262
|
+
else:
|
263
|
+
self.assertIn(result.shape, expected_shape)
|
264
|
+
|
265
|
+
@parameterized.expand(PRETRAINED_TEST_CASES)
|
266
|
+
@skip_if_quick
|
267
|
+
@skip_if_no_cuda
|
268
|
+
def test_resnet_pretrained(self, model, input_param, _input_shape, _expected_shape):
|
269
|
+
net = model(**input_param).to(device)
|
270
|
+
# Save ckpt
|
271
|
+
torch.save(net.state_dict(), self.tmp_ckpt_filename)
|
272
|
+
|
273
|
+
cp_input_param = copy.copy(input_param)
|
274
|
+
# Custom pretrained weights
|
275
|
+
cp_input_param["pretrained"] = self.tmp_ckpt_filename
|
276
|
+
pretrained_net = model(**cp_input_param)
|
277
|
+
equal_state_dict(net.state_dict(), pretrained_net.state_dict())
|
278
|
+
|
279
|
+
if has_hf_modules:
|
280
|
+
# True flag
|
281
|
+
cp_input_param["pretrained"] = True
|
282
|
+
resnet_depth = int(re.search(r"resnet(\d+)", model.__name__).group(1))
|
283
|
+
|
284
|
+
bias_downsample, shortcut_type = get_medicalnet_pretrained_resnet_args(resnet_depth)
|
285
|
+
|
286
|
+
# With orig. test cases
|
287
|
+
if (
|
288
|
+
input_param.get("spatial_dims", 3) == 3
|
289
|
+
and input_param.get("n_input_channels", 3) == 1
|
290
|
+
and input_param.get("feed_forward", True) is False
|
291
|
+
and input_param.get("shortcut_type", "B") == shortcut_type
|
292
|
+
and (input_param.get("bias_downsample", True) == bias_downsample)
|
293
|
+
):
|
294
|
+
model(**cp_input_param)
|
295
|
+
else:
|
296
|
+
with self.assertRaises(NotImplementedError):
|
297
|
+
model(**cp_input_param)
|
298
|
+
|
299
|
+
# forcing MedicalNet pretrained download for 3D tests cases
|
300
|
+
cp_input_param["n_input_channels"] = 1
|
301
|
+
cp_input_param["feed_forward"] = False
|
302
|
+
cp_input_param["shortcut_type"] = shortcut_type
|
303
|
+
cp_input_param["bias_downsample"] = bias_downsample
|
304
|
+
if cp_input_param.get("spatial_dims", 3) == 3:
|
305
|
+
with skip_if_downloading_fails():
|
306
|
+
pretrained_net = model(**cp_input_param).to(device)
|
307
|
+
medicalnet_state_dict = get_pretrained_resnet_medicalnet(resnet_depth, device=device)
|
308
|
+
medicalnet_state_dict = {
|
309
|
+
key.replace("module.", ""): value for key, value in medicalnet_state_dict.items()
|
310
|
+
}
|
311
|
+
equal_state_dict(pretrained_net.state_dict(), medicalnet_state_dict)
|
312
|
+
|
313
|
+
@parameterized.expand(TEST_SCRIPT_CASES)
|
314
|
+
def test_script(self, model, input_param, input_shape, expected_shape):
|
315
|
+
net = model(**input_param)
|
316
|
+
test_data = torch.randn(input_shape)
|
317
|
+
test_script_save(net, test_data)
|
318
|
+
|
319
|
+
|
320
|
+
@SkipIfNoModule("hf_hub_download")
|
321
|
+
class TestExtractFeatures(unittest.TestCase):
|
322
|
+
@parameterized.expand(CASE_EXTRACT_FEATURES)
|
323
|
+
def test_shape(self, input_param, input_shape, expected_shapes):
|
324
|
+
device = "cuda" if torch.cuda.is_available() else "cpu"
|
325
|
+
|
326
|
+
with skip_if_downloading_fails():
|
327
|
+
net = ResNetFeatures(**input_param).to(device)
|
328
|
+
|
329
|
+
# run inference with random tensor
|
330
|
+
with eval_mode(net):
|
331
|
+
features = net(torch.randn(input_shape).to(device))
|
332
|
+
|
333
|
+
# check output shape
|
334
|
+
self.assertEqual(len(features), len(expected_shapes))
|
335
|
+
for feature, expected_shape in zip(features, expected_shapes):
|
336
|
+
self.assertEqual(feature.shape, torch.Size(expected_shape))
|
337
|
+
|
338
|
+
|
339
|
+
if __name__ == "__main__":
|
340
|
+
unittest.main()
|
@@ -0,0 +1,120 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.networks import eval_mode
|
20
|
+
from monai.networks.nets import SegResNet, SegResNetVAE
|
21
|
+
from monai.utils import UpsampleMode
|
22
|
+
from tests.test_utils import test_script_save
|
23
|
+
|
24
|
+
device = "cuda" if torch.cuda.is_available() else "cpu"
|
25
|
+
|
26
|
+
TEST_CASE_SEGRESNET = []
|
27
|
+
for spatial_dims in range(2, 4):
|
28
|
+
for init_filters in [8, 16]:
|
29
|
+
for dropout_prob in [None, 0.2]:
|
30
|
+
for norm in [("GROUP", {"num_groups": 8}), ("batch", {"track_running_stats": False}), "instance"]:
|
31
|
+
for upsample_mode in UpsampleMode:
|
32
|
+
test_case = [
|
33
|
+
{
|
34
|
+
"spatial_dims": spatial_dims,
|
35
|
+
"init_filters": init_filters,
|
36
|
+
"dropout_prob": dropout_prob,
|
37
|
+
"norm": norm,
|
38
|
+
"upsample_mode": upsample_mode,
|
39
|
+
"use_conv_final": False,
|
40
|
+
},
|
41
|
+
(2, 1, *([16] * spatial_dims)),
|
42
|
+
(2, init_filters, *([16] * spatial_dims)),
|
43
|
+
]
|
44
|
+
TEST_CASE_SEGRESNET.append(test_case)
|
45
|
+
|
46
|
+
TEST_CASE_SEGRESNET_2 = []
|
47
|
+
for spatial_dims in range(2, 4):
|
48
|
+
for init_filters in [8, 16]:
|
49
|
+
for out_channels in range(1, 3):
|
50
|
+
for upsample_mode in UpsampleMode:
|
51
|
+
test_case = [
|
52
|
+
{
|
53
|
+
"spatial_dims": spatial_dims,
|
54
|
+
"init_filters": init_filters,
|
55
|
+
"out_channels": out_channels,
|
56
|
+
"upsample_mode": upsample_mode,
|
57
|
+
},
|
58
|
+
(2, 1, *([16] * spatial_dims)),
|
59
|
+
(2, out_channels, *([16] * spatial_dims)),
|
60
|
+
]
|
61
|
+
TEST_CASE_SEGRESNET_2.append(test_case)
|
62
|
+
|
63
|
+
TEST_CASE_SEGRESNET_VAE = []
|
64
|
+
for spatial_dims in range(2, 4):
|
65
|
+
for init_filters in [8, 16]:
|
66
|
+
for out_channels in range(1, 3):
|
67
|
+
for upsample_mode in UpsampleMode:
|
68
|
+
for vae_estimate_std in [True, False]:
|
69
|
+
test_case = [
|
70
|
+
{
|
71
|
+
"spatial_dims": spatial_dims,
|
72
|
+
"init_filters": init_filters,
|
73
|
+
"out_channels": out_channels,
|
74
|
+
"upsample_mode": upsample_mode,
|
75
|
+
"act": ("leakyrelu", {"inplace": True, "negative_slope": 0.01}),
|
76
|
+
"input_image_size": ([16] * spatial_dims),
|
77
|
+
"vae_estimate_std": vae_estimate_std,
|
78
|
+
},
|
79
|
+
(2, 1, *([16] * spatial_dims)),
|
80
|
+
(2, out_channels, *([16] * spatial_dims)),
|
81
|
+
]
|
82
|
+
TEST_CASE_SEGRESNET_VAE.append(test_case)
|
83
|
+
|
84
|
+
|
85
|
+
class TestResNet(unittest.TestCase):
|
86
|
+
@parameterized.expand(TEST_CASE_SEGRESNET + TEST_CASE_SEGRESNET_2)
|
87
|
+
def test_shape(self, input_param, input_shape, expected_shape):
|
88
|
+
net = SegResNet(**input_param).to(device)
|
89
|
+
with eval_mode(net):
|
90
|
+
result = net(torch.randn(input_shape).to(device))
|
91
|
+
self.assertEqual(result.shape, expected_shape)
|
92
|
+
|
93
|
+
def test_ill_arg(self):
|
94
|
+
with self.assertRaises(ValueError):
|
95
|
+
SegResNet(spatial_dims=4)
|
96
|
+
|
97
|
+
def test_script(self):
|
98
|
+
input_param, input_shape, expected_shape = TEST_CASE_SEGRESNET[0]
|
99
|
+
net = SegResNet(**input_param)
|
100
|
+
test_data = torch.randn(input_shape)
|
101
|
+
test_script_save(net, test_data)
|
102
|
+
|
103
|
+
|
104
|
+
class TestResNetVAE(unittest.TestCase):
|
105
|
+
@parameterized.expand(TEST_CASE_SEGRESNET_VAE)
|
106
|
+
def test_vae_shape(self, input_param, input_shape, expected_shape):
|
107
|
+
net = SegResNetVAE(**input_param).to(device)
|
108
|
+
with eval_mode(net):
|
109
|
+
result, _ = net(torch.randn(input_shape).to(device))
|
110
|
+
self.assertEqual(result.shape, expected_shape)
|
111
|
+
|
112
|
+
def test_script(self):
|
113
|
+
input_param, input_shape, expected_shape = TEST_CASE_SEGRESNET_VAE[0]
|
114
|
+
net = SegResNetVAE(**input_param)
|
115
|
+
test_data = torch.randn(input_shape)
|
116
|
+
test_script_save(net, test_data)
|
117
|
+
|
118
|
+
|
119
|
+
if __name__ == "__main__":
|
120
|
+
unittest.main()
|