monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/handlers/__init__.py +1 -0
- monai/handlers/average_precision.py +53 -0
- monai/inferers/inferer.py +10 -7
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/metrics/__init__.py +1 -0
- monai/metrics/average_precision.py +187 -0
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utility/array.py +2 -12
- monai/transforms/utils.py +1 -2
- monai/transforms/utils_pytorch_numpy_unification.py +2 -4
- monai/utils/enums.py +3 -2
- monai/utils/module.py +6 -6
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
- monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_average_precision.py +79 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1388 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +884 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_average_precision.py +162 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
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- tests/utils/misc/test_str2list.py +33 -0
- tests/utils/test_alias.py +44 -0
- tests/utils/test_component_store.py +73 -0
- tests/utils/test_deprecated.py +455 -0
- tests/utils/test_enum_bound_interp.py +75 -0
- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import unittest
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from copy import deepcopy
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import numpy as np
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import torch
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from parameterized import parameterized
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from monai.apps.detection.transforms.box_ops import convert_mask_to_box
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from monai.apps.detection.transforms.dictionary import (
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AffineBoxToImageCoordinated,
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AffineBoxToWorldCoordinated,
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BoxToMaskd,
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ClipBoxToImaged,
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ConvertBoxModed,
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FlipBoxd,
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MaskToBoxd,
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RandCropBoxByPosNegLabeld,
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RandFlipBoxd,
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RandRotateBox90d,
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RandZoomBoxd,
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RotateBox90d,
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ZoomBoxd,
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)
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from monai.data.meta_tensor import MetaTensor
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from monai.transforms import CastToTyped, Invertd
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from tests.test_utils import TEST_NDARRAYS, assert_allclose
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TESTS_3D = []
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boxes = [[0, 0, 0, 0, 0, 0], [0, 1, 0, 2, 3, 3], [0, 1, 1, 2, 3, 4]]
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labels = [1, 1, 0]
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scores = [[0.2, 0.8], [0.3, 0.7], [0.6, 0.4]]
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image_size = [1, 4, 6, 4]
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image = np.zeros(image_size)
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for p in TEST_NDARRAYS:
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TESTS_3D.append(
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[
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{"box_keys": "boxes", "dst_mode": "xyzwhd"},
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{"boxes": p(boxes), "image": p(image), "labels": p(labels), "scores": p(scores)},
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p([[0, 0, 0, 0, 0, 0], [0, 1, 0, 2, 2, 3], [0, 1, 1, 2, 2, 3]]),
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p([[0, 0, 0, 0, 0, 0], [0, 3, 0, 1, 9, 4.5], [0, 3, 1.5, 1, 9, 6]]),
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p([[1, -6, -1, 1, -6, -1], [1, -3, -1, 2, 3, 3.5], [1, -3, 0.5, 2, 3, 5]]),
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p([[4, 6, 4, 4, 6, 4], [2, 3, 1, 4, 5, 4], [2, 3, 0, 4, 5, 3]]),
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p([[0, 1, 0, 2, 3, 3], [0, 1, 1, 2, 3, 4]]),
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p([[6, 0, 0, 6, 0, 0], [3, 0, 0, 5, 2, 3], [3, 0, 1, 5, 2, 4]]),
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]
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)
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TESTS_2D = []
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boxes = [[0, 1, 2, 2], [0, 0, 1, 1]]
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labels = [1, 0]
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image_size = [1, 2, 2]
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image = np.zeros(image_size)
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for p in TEST_NDARRAYS:
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TESTS_2D.append(
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[{"boxes": p(boxes), "image": p(image), "labels": p(labels)}, p([[[0, 2], [0, 2]], [[1, 0], [0, 0]]])]
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)
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TESTS_2D_mask = []
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boxes_mask = [[[-1, 0], [0, -1]]]
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for p in TEST_NDARRAYS:
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TESTS_2D_mask.append([p(boxes_mask), (p([[0.0, 0.0, 2.0, 2.0]]), p([0]))])
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boxes_mask = [[[-1, 0], [0, -1]], [[-1, 1], [1, -1]]]
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for p in TEST_NDARRAYS:
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TESTS_2D_mask.append([p(boxes_mask), (p([[0.0, 0.0, 2.0, 2.0], [0.0, 0.0, 2.0, 2.0]]), p([0, 1]))])
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class TestBoxTransform(unittest.TestCase):
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@parameterized.expand(TESTS_2D_mask)
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def test_value_2d_mask(self, mask, expected_box_label):
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box_label = convert_mask_to_box(mask)
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assert_allclose(box_label[0], expected_box_label[0], type_test=True, device_test=True, atol=1e-3)
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assert_allclose(box_label[1], expected_box_label[1], type_test=True, device_test=True, atol=1e-3)
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@parameterized.expand(TESTS_2D)
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def test_value_2d(self, data, expected_mask):
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test_dtype = [torch.float32, torch.float16]
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for dtype in test_dtype:
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data = CastToTyped(keys=["image", "boxes"], dtype=dtype)(data)
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transform_to_mask = BoxToMaskd(
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box_keys="boxes",
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box_mask_keys="box_mask",
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box_ref_image_keys="image",
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label_keys="labels",
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min_fg_label=0,
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ellipse_mask=False,
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)
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transform_to_box = MaskToBoxd(
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box_keys="boxes", box_mask_keys="box_mask", label_keys="labels", min_fg_label=0
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)
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data_mask = transform_to_mask(data)
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assert_allclose(data_mask["box_mask"], expected_mask, type_test=True, device_test=True, atol=1e-3)
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data_back = transform_to_box(data_mask)
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
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assert_allclose(data_back["labels"], data["labels"], type_test=False, device_test=False, atol=1e-3)
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def test_value_3d_mask(self):
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test_dtype = [torch.float32, torch.float16]
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image = np.zeros((1, 32, 33, 34))
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boxes = np.array([[7, 8, 9, 10, 12, 13], [1, 3, 5, 2, 5, 9], [0, 0, 0, 1, 1, 1]])
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data = {"image": image, "boxes": boxes, "labels": np.array((1, 0, 3))}
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for dtype in test_dtype:
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data = CastToTyped(keys=["image", "boxes"], dtype=dtype)(data)
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transform_to_mask = BoxToMaskd(
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box_keys="boxes",
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box_mask_keys="box_mask",
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box_ref_image_keys="image",
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label_keys="labels",
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min_fg_label=0,
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ellipse_mask=False,
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)
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transform_to_box = MaskToBoxd(
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box_keys="boxes", box_mask_keys="box_mask", label_keys="labels", min_fg_label=0
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)
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data_mask = transform_to_mask(data)
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assert_allclose(data_mask["box_mask"].shape, (3, 32, 33, 34), type_test=True, device_test=True, atol=1e-3)
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data_back = transform_to_box(data_mask)
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
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assert_allclose(data_back["labels"], data["labels"], type_test=False, device_test=False, atol=1e-3)
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def test_shape_assertion(self):
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test_dtype = torch.float32
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image = np.zeros((1, 10, 10, 10))
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boxes = np.array([[7, 8, 9, 10, 12, 13]])
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data = {"image": image, "boxes": boxes, "labels": np.array((1,))}
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data = CastToTyped(keys=["image", "boxes"], dtype=test_dtype)(data)
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transform_to_mask = BoxToMaskd(
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box_keys="boxes",
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box_mask_keys="box_mask",
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box_ref_image_keys="image",
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label_keys="labels",
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min_fg_label=0,
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ellipse_mask=False,
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)
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with self.assertRaises(ValueError) as context:
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transform_to_mask(data)
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self.assertTrue("Some boxes are larger than the image." in str(context.exception))
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@parameterized.expand(TESTS_3D)
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def test_value_3d(
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self,
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keys,
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data,
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expected_convert_result,
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expected_zoom_result,
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expected_zoom_keepsize_result,
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expected_flip_result,
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expected_clip_result,
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expected_rotate_result,
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):
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test_dtype = [torch.float32]
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for dtype in test_dtype:
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data = CastToTyped(keys=["image", "boxes"], dtype=dtype)(data)
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# test ConvertBoxToStandardModed
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transform_convert_mode = ConvertBoxModed(**keys)
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convert_result = transform_convert_mode(data)
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assert_allclose(
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convert_result["boxes"], expected_convert_result, type_test=True, device_test=True, atol=1e-3
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)
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invert_transform_convert_mode = Invertd(
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keys=["boxes"], transform=transform_convert_mode, orig_keys=["boxes"]
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)
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data_back = invert_transform_convert_mode(convert_result)
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if "boxes_transforms" in data_back: # if the transform is tracked in dict:
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self.assertEqual(data_back["boxes_transforms"], []) # it should be updated
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
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# test ZoomBoxd
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transform_zoom = ZoomBoxd(
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image_keys="image", box_keys="boxes", box_ref_image_keys="image", zoom=[0.5, 3, 1.5], keep_size=False
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)
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zoom_result = transform_zoom(data)
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self.assertEqual(len(zoom_result["image"].applied_operations), 1)
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assert_allclose(zoom_result["boxes"], expected_zoom_result, type_test=True, device_test=True, atol=1e-3)
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invert_transform_zoom = Invertd(
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keys=["image", "boxes"], transform=transform_zoom, orig_keys=["image", "boxes"]
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)
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data_back = invert_transform_zoom(zoom_result)
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self.assertEqual(data_back["image"].applied_operations, [])
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
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assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
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transform_zoom = ZoomBoxd(
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image_keys="image", box_keys="boxes", box_ref_image_keys="image", zoom=[0.5, 3, 1.5], keep_size=True
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)
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zoom_result = transform_zoom(data)
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self.assertEqual(len(zoom_result["image"].applied_operations), 1)
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assert_allclose(
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zoom_result["boxes"], expected_zoom_keepsize_result, type_test=True, device_test=True, atol=1e-3
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)
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# test RandZoomBoxd
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transform_zoom = RandZoomBoxd(
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image_keys="image",
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box_keys="boxes",
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box_ref_image_keys="image",
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prob=1.0,
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min_zoom=(0.3,) * 3,
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max_zoom=(3.0,) * 3,
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keep_size=False,
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)
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zoom_result = transform_zoom(data)
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self.assertEqual(len(zoom_result["image"].applied_operations), 1)
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invert_transform_zoom = Invertd(
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keys=["image", "boxes"], transform=transform_zoom, orig_keys=["image", "boxes"]
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)
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data_back = invert_transform_zoom(zoom_result)
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self.assertEqual(data_back["image"].applied_operations, [])
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=0.01)
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assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
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# test AffineBoxToImageCoordinated, AffineBoxToWorldCoordinated
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transform_affine = AffineBoxToImageCoordinated(box_keys="boxes", box_ref_image_keys="image")
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if not isinstance(data["image"], MetaTensor): # metadict should be undefined and it's an exception
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with self.assertRaises(Exception) as context:
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transform_affine(deepcopy(data))
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self.assertTrue("Please check whether it is the correct the image meta key." in str(context.exception))
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data["image"] = MetaTensor(data["image"], meta={"affine": torch.diag(1.0 / torch.Tensor([0.5, 3, 1.5, 1]))})
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affine_result = transform_affine(data)
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if "boxes_transforms" in affine_result:
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self.assertEqual(len(affine_result["boxes_transforms"]), 1)
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assert_allclose(affine_result["boxes"], expected_zoom_result, type_test=True, device_test=True, atol=0.01)
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invert_transform_affine = Invertd(keys=["boxes"], transform=transform_affine, orig_keys=["boxes"])
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data_back = invert_transform_affine(affine_result)
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if "boxes_transforms" in data_back:
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self.assertEqual(data_back["boxes_transforms"], [])
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=0.01)
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invert_transform_affine = AffineBoxToWorldCoordinated(box_keys="boxes", box_ref_image_keys="image")
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data_back = invert_transform_affine(affine_result)
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=0.01)
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# test FlipBoxd
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transform_flip = FlipBoxd(
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image_keys="image", box_keys="boxes", box_ref_image_keys="image", spatial_axis=[0, 1, 2]
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)
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flip_result = transform_flip(data)
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if "boxes_transforms" in flip_result:
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self.assertEqual(len(flip_result["boxes_transforms"]), 1)
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assert_allclose(flip_result["boxes"], expected_flip_result, type_test=True, device_test=True, atol=1e-3)
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invert_transform_flip = Invertd(
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keys=["image", "boxes"], transform=transform_flip, orig_keys=["image", "boxes"]
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)
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data_back = invert_transform_flip(flip_result)
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if "boxes_transforms" in data_back:
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self.assertEqual(data_back["boxes_transforms"], [])
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assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
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assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
|
263
|
+
|
264
|
+
# test RandFlipBoxd
|
265
|
+
for spatial_axis in [(0,), (1,), (2,), (0, 1), (1, 2)]:
|
266
|
+
transform_flip = RandFlipBoxd(
|
267
|
+
image_keys="image",
|
268
|
+
box_keys="boxes",
|
269
|
+
box_ref_image_keys="image",
|
270
|
+
prob=1.0,
|
271
|
+
spatial_axis=spatial_axis,
|
272
|
+
)
|
273
|
+
flip_result = transform_flip(data)
|
274
|
+
if "boxes_transforms" in flip_result:
|
275
|
+
self.assertEqual(len(flip_result["boxes_transforms"]), 1)
|
276
|
+
invert_transform_flip = Invertd(
|
277
|
+
keys=["image", "boxes"], transform=transform_flip, orig_keys=["image", "boxes"]
|
278
|
+
)
|
279
|
+
data_back = invert_transform_flip(flip_result)
|
280
|
+
if "boxes_transforms" in data_back:
|
281
|
+
self.assertEqual(data_back["boxes_transforms"], [])
|
282
|
+
assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
|
283
|
+
assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
|
284
|
+
|
285
|
+
# test ClipBoxToImaged
|
286
|
+
transform_clip = ClipBoxToImaged(
|
287
|
+
box_keys="boxes", box_ref_image_keys="image", label_keys=["labels", "scores"], remove_empty=True
|
288
|
+
)
|
289
|
+
clip_result = transform_clip(data)
|
290
|
+
assert_allclose(clip_result["boxes"], expected_clip_result, type_test=True, device_test=True, atol=1e-3)
|
291
|
+
assert_allclose(clip_result["labels"], data["labels"][1:], type_test=True, device_test=True, atol=1e-3)
|
292
|
+
assert_allclose(clip_result["scores"], data["scores"][1:], type_test=True, device_test=True, atol=1e-3)
|
293
|
+
|
294
|
+
transform_clip = ClipBoxToImaged(
|
295
|
+
box_keys="boxes", box_ref_image_keys="image", label_keys=[], remove_empty=True
|
296
|
+
) # corner case when label_keys is empty
|
297
|
+
clip_result = transform_clip(data)
|
298
|
+
assert_allclose(clip_result["boxes"], expected_clip_result, type_test=True, device_test=True, atol=1e-3)
|
299
|
+
|
300
|
+
# test RandCropBoxByPosNegLabeld
|
301
|
+
transform_crop = RandCropBoxByPosNegLabeld(
|
302
|
+
image_keys="image", box_keys="boxes", label_keys=["labels", "scores"], spatial_size=2, num_samples=3
|
303
|
+
)
|
304
|
+
crop_result = transform_crop(data)
|
305
|
+
assert len(crop_result) == 3
|
306
|
+
for ll in range(3):
|
307
|
+
assert_allclose(
|
308
|
+
crop_result[ll]["boxes"].shape[0],
|
309
|
+
crop_result[ll]["labels"].shape[0],
|
310
|
+
type_test=True,
|
311
|
+
device_test=True,
|
312
|
+
atol=1e-3,
|
313
|
+
)
|
314
|
+
assert_allclose(
|
315
|
+
crop_result[ll]["boxes"].shape[0],
|
316
|
+
crop_result[ll]["scores"].shape[0],
|
317
|
+
type_test=True,
|
318
|
+
device_test=True,
|
319
|
+
atol=1e-3,
|
320
|
+
)
|
321
|
+
|
322
|
+
# test RotateBox90d
|
323
|
+
transform_rotate = RotateBox90d(
|
324
|
+
image_keys="image", box_keys="boxes", box_ref_image_keys="image", k=1, spatial_axes=[0, 1]
|
325
|
+
)
|
326
|
+
rotate_result = transform_rotate(data)
|
327
|
+
self.assertEqual(len(rotate_result["image"].applied_operations), 1)
|
328
|
+
assert_allclose(rotate_result["boxes"], expected_rotate_result, type_test=True, device_test=True, atol=1e-3)
|
329
|
+
invert_transform_rotate = Invertd(
|
330
|
+
keys=["image", "boxes"], transform=transform_rotate, orig_keys=["image", "boxes"]
|
331
|
+
)
|
332
|
+
data_back = invert_transform_rotate(rotate_result)
|
333
|
+
self.assertEqual(data_back["image"].applied_operations, [])
|
334
|
+
assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
|
335
|
+
assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
|
336
|
+
|
337
|
+
transform_rotate = RandRotateBox90d(
|
338
|
+
image_keys="image", box_keys="boxes", box_ref_image_keys="image", prob=1.0, max_k=3, spatial_axes=[0, 1]
|
339
|
+
)
|
340
|
+
rotate_result = transform_rotate(data)
|
341
|
+
self.assertEqual(len(rotate_result["image"].applied_operations), 1)
|
342
|
+
invert_transform_rotate = Invertd(
|
343
|
+
keys=["image", "boxes"], transform=transform_rotate, orig_keys=["image", "boxes"]
|
344
|
+
)
|
345
|
+
data_back = invert_transform_rotate(rotate_result)
|
346
|
+
self.assertEqual(data_back["image"].applied_operations, [])
|
347
|
+
assert_allclose(data_back["boxes"], data["boxes"], type_test=False, device_test=False, atol=1e-3)
|
348
|
+
assert_allclose(data_back["image"], data["image"], type_test=False, device_test=False, atol=1e-3)
|
349
|
+
|
350
|
+
def test_crop_shape(self):
|
351
|
+
tt = RandCropBoxByPosNegLabeld(
|
352
|
+
image_keys=["image"],
|
353
|
+
box_keys="box",
|
354
|
+
label_keys="label",
|
355
|
+
spatial_size=[10, 7, -1],
|
356
|
+
whole_box=True,
|
357
|
+
num_samples=1,
|
358
|
+
pos=1,
|
359
|
+
neg=0,
|
360
|
+
)
|
361
|
+
iii = {
|
362
|
+
"image": torch.rand(1, 10, 8, 7),
|
363
|
+
"box": torch.tensor(((1.0, 2.0, 3.0, 4.0, 5.0, 6.0),)),
|
364
|
+
"label": torch.tensor((1,)).long(),
|
365
|
+
}
|
366
|
+
self.assertEqual(tt(iii)[0]["image"].shape, (1, 10, 7, 7))
|
367
|
+
|
368
|
+
|
369
|
+
if __name__ == "__main__":
|
370
|
+
unittest.main()
|
@@ -0,0 +1,10 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
@@ -0,0 +1,88 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.apps.detection.utils.anchor_utils import AnchorGenerator, AnchorGeneratorWithAnchorShape
|
20
|
+
from monai.utils import optional_import
|
21
|
+
from tests.test_utils import SkipIfBeforePyTorchVersion, assert_allclose, test_script_save
|
22
|
+
|
23
|
+
_, has_torchvision = optional_import("torchvision")
|
24
|
+
|
25
|
+
TEST_CASES_2D = [
|
26
|
+
[
|
27
|
+
{"sizes": ((10, 12, 14, 16), (20, 24, 28, 32)), "aspect_ratios": ((1.0, 0.5, 2.0), (1.0, 0.5, 2.0))},
|
28
|
+
(5, 3, 128, 128),
|
29
|
+
((5, 7, 64, 32), (5, 7, 32, 16)),
|
30
|
+
]
|
31
|
+
]
|
32
|
+
|
33
|
+
TEST_CASES_SHAPE_3D = [
|
34
|
+
[
|
35
|
+
{"feature_map_scales": (1, 2), "base_anchor_shapes": ((4, 3, 6), (8, 2, 4))},
|
36
|
+
(5, 3, 128, 128, 128),
|
37
|
+
((5, 7, 64, 32, 32), (5, 7, 32, 16, 16)),
|
38
|
+
]
|
39
|
+
]
|
40
|
+
|
41
|
+
|
42
|
+
@SkipIfBeforePyTorchVersion((1, 11))
|
43
|
+
@unittest.skipUnless(has_torchvision, "Requires torchvision")
|
44
|
+
class TestAnchorGenerator(unittest.TestCase):
|
45
|
+
@parameterized.expand(TEST_CASES_2D)
|
46
|
+
def test_anchor_2d(self, input_param, image_shape, feature_maps_shapes):
|
47
|
+
torch_anchor_utils, _ = optional_import("torchvision.models.detection.anchor_utils")
|
48
|
+
image_list, _ = optional_import("torchvision.models.detection.image_list")
|
49
|
+
|
50
|
+
# test it behaves the same with torchvision for 2d
|
51
|
+
anchor = AnchorGenerator(**input_param, indexing="xy")
|
52
|
+
anchor_ref = torch_anchor_utils.AnchorGenerator(**input_param)
|
53
|
+
for a, a_f in zip(anchor.cell_anchors, anchor_ref.cell_anchors):
|
54
|
+
assert_allclose(a, a_f, type_test=True, device_test=False, atol=1e-3)
|
55
|
+
for a, a_f in zip(anchor.num_anchors_per_location(), anchor_ref.num_anchors_per_location()):
|
56
|
+
assert_allclose(a, a_f, type_test=True, device_test=False, atol=1e-3)
|
57
|
+
|
58
|
+
grid_sizes = [[2, 2], [1, 1]]
|
59
|
+
strides = [[torch.tensor(1), torch.tensor(2)], [torch.tensor(2), torch.tensor(4)]]
|
60
|
+
for a, a_f in zip(anchor.grid_anchors(grid_sizes, strides), anchor_ref.grid_anchors(grid_sizes, strides)):
|
61
|
+
assert_allclose(a, a_f, type_test=True, device_test=False, atol=1e-3)
|
62
|
+
|
63
|
+
images = torch.rand(image_shape)
|
64
|
+
feature_maps = tuple(torch.rand(fs) for fs in feature_maps_shapes)
|
65
|
+
result = anchor(images, feature_maps)
|
66
|
+
result_ref = anchor_ref(image_list.ImageList(images, ([123, 122],)), feature_maps)
|
67
|
+
for a, a_f in zip(result, result_ref):
|
68
|
+
assert_allclose(a, a_f, type_test=True, device_test=False, atol=0.1)
|
69
|
+
|
70
|
+
@parameterized.expand(TEST_CASES_2D)
|
71
|
+
def test_script_2d(self, input_param, image_shape, feature_maps_shapes):
|
72
|
+
# test whether support torchscript
|
73
|
+
anchor = AnchorGenerator(**input_param, indexing="xy")
|
74
|
+
images = torch.rand(image_shape)
|
75
|
+
feature_maps = tuple(torch.rand(fs) for fs in feature_maps_shapes)
|
76
|
+
test_script_save(anchor, images, feature_maps)
|
77
|
+
|
78
|
+
@parameterized.expand(TEST_CASES_SHAPE_3D)
|
79
|
+
def test_script_3d(self, input_param, image_shape, feature_maps_shapes):
|
80
|
+
# test whether support torchscript
|
81
|
+
anchor = AnchorGeneratorWithAnchorShape(**input_param, indexing="ij")
|
82
|
+
images = torch.rand(image_shape)
|
83
|
+
feature_maps = tuple(torch.rand(fs) for fs in feature_maps_shapes)
|
84
|
+
test_script_save(anchor, images, feature_maps)
|
85
|
+
|
86
|
+
|
87
|
+
if __name__ == "__main__":
|
88
|
+
unittest.main()
|
@@ -0,0 +1,46 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.apps.detection.utils.ATSS_matcher import ATSSMatcher
|
20
|
+
from monai.data.box_utils import box_iou
|
21
|
+
from tests.test_utils import assert_allclose
|
22
|
+
|
23
|
+
TEST_CASES = [
|
24
|
+
[
|
25
|
+
{"num_candidates": 2, "similarity_fn": box_iou, "center_in_gt": False},
|
26
|
+
torch.tensor([[0, 1, 2, 3, 2, 5]], dtype=torch.float16),
|
27
|
+
torch.tensor([[0, 1, 2, 3, 2, 5], [0, 1, 1, 3, 2, 5], [0, 1, 2, 3, 2, 4]], dtype=torch.float16),
|
28
|
+
[3],
|
29
|
+
3,
|
30
|
+
torch.tensor([0, -1, -1]),
|
31
|
+
]
|
32
|
+
]
|
33
|
+
|
34
|
+
|
35
|
+
class TestATSS(unittest.TestCase):
|
36
|
+
@parameterized.expand(TEST_CASES)
|
37
|
+
def test_atss(self, input_param, boxes, anchors, num_anchors_per_level, num_anchors_per_loc, expected_matches):
|
38
|
+
matcher = ATSSMatcher(**input_param, debug=True)
|
39
|
+
match_quality_matrix, matches = matcher.compute_matches(
|
40
|
+
boxes, anchors, num_anchors_per_level, num_anchors_per_loc
|
41
|
+
)
|
42
|
+
assert_allclose(matches, expected_matches, type_test=True, device_test=True, atol=0)
|
43
|
+
|
44
|
+
|
45
|
+
if __name__ == "__main__":
|
46
|
+
unittest.main()
|
@@ -0,0 +1,43 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
|
18
|
+
from monai.apps.detection.utils.box_coder import BoxCoder
|
19
|
+
from monai.transforms import CastToType
|
20
|
+
from tests.test_utils import assert_allclose
|
21
|
+
|
22
|
+
|
23
|
+
class TestBoxTransform(unittest.TestCase):
|
24
|
+
def test_value(self):
|
25
|
+
box_coder = BoxCoder(weights=[1, 1, 1, 1, 1, 1])
|
26
|
+
test_dtype = [torch.float32, torch.float16]
|
27
|
+
for dtype in test_dtype:
|
28
|
+
gt_boxes_0 = torch.rand((10, 3)).abs()
|
29
|
+
gt_boxes_1 = gt_boxes_0 + torch.rand((10, 3)).abs() + 10
|
30
|
+
gt_boxes = torch.cat((gt_boxes_0, gt_boxes_1), dim=1)
|
31
|
+
gt_boxes = CastToType(dtype=dtype)(gt_boxes)
|
32
|
+
|
33
|
+
proposals_0 = (gt_boxes_0 + torch.rand(gt_boxes_0.shape)).abs()
|
34
|
+
proposals_1 = proposals_0 + torch.rand(gt_boxes_0.shape).abs() + 10
|
35
|
+
proposals = torch.cat((proposals_0, proposals_1), dim=1)
|
36
|
+
|
37
|
+
rel_gt_boxes = box_coder.encode_single(gt_boxes, proposals)
|
38
|
+
gt_back = box_coder.decode_single(rel_gt_boxes, proposals)
|
39
|
+
assert_allclose(gt_back, gt_boxes, type_test=True, device_test=True, atol=0.1)
|
40
|
+
|
41
|
+
|
42
|
+
if __name__ == "__main__":
|
43
|
+
unittest.main()
|
@@ -0,0 +1,67 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
import torch
|
17
|
+
from parameterized import parameterized
|
18
|
+
|
19
|
+
from monai.apps.detection.utils.box_selector import BoxSelector
|
20
|
+
from tests.test_utils import assert_allclose
|
21
|
+
|
22
|
+
device = "cuda" if torch.cuda.is_available() else "cpu"
|
23
|
+
num_anchors = 7
|
24
|
+
|
25
|
+
TEST_CASE = []
|
26
|
+
TEST_CASE.append(
|
27
|
+
[ # 2D
|
28
|
+
{
|
29
|
+
"apply_sigmoid": False,
|
30
|
+
"score_thresh": 0.1,
|
31
|
+
"topk_candidates_per_level": 2,
|
32
|
+
"nms_thresh": 0.1,
|
33
|
+
"detections_per_img": 5,
|
34
|
+
},
|
35
|
+
[torch.tensor([[1, 2, 3, 2, 3, 4], [5, 6, 7, 8, 9, 10]]).to(torch.float16)],
|
36
|
+
[torch.tensor([[0.1, 0.6], [0.2, 0.2]])],
|
37
|
+
(20, 20, 20),
|
38
|
+
torch.tensor([[1, 2, 3, 2, 3, 4], [5, 6, 7, 8, 9, 10]]),
|
39
|
+
]
|
40
|
+
)
|
41
|
+
TEST_CASE.append(
|
42
|
+
[
|
43
|
+
{
|
44
|
+
"apply_sigmoid": False,
|
45
|
+
"score_thresh": 0.1,
|
46
|
+
"topk_candidates_per_level": 1,
|
47
|
+
"nms_thresh": 0.1,
|
48
|
+
"detections_per_img": 5,
|
49
|
+
},
|
50
|
+
[torch.tensor([[1, 2, 3, 2, 3, 4]]).to(torch.float32), torch.tensor([[5, 6, 7, 8, 9, 10]]).to(torch.float32)],
|
51
|
+
[torch.tensor([[0.3, 0.6]]), torch.tensor([[0.2, 0.2]])],
|
52
|
+
(20, 20, 8),
|
53
|
+
torch.tensor([[1, 2, 3, 2, 3, 4], [5, 6, 7, 8, 9, 8]]),
|
54
|
+
]
|
55
|
+
)
|
56
|
+
|
57
|
+
|
58
|
+
class TestBoxSelector(unittest.TestCase):
|
59
|
+
@parameterized.expand(TEST_CASE)
|
60
|
+
def test_box_selector(self, input_param, boxes, logits, image_shape, expected_results):
|
61
|
+
box_selector = BoxSelector(**input_param)
|
62
|
+
result = box_selector.select_boxes_per_image(boxes, logits, image_shape)
|
63
|
+
assert_allclose(result[0], expected_results, type_test=True, device_test=False, atol=1e-3)
|
64
|
+
|
65
|
+
|
66
|
+
if __name__ == "__main__":
|
67
|
+
unittest.main()
|