PyPI - monai-weekly - Versions diffs - 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl - Mend

monai-weekly 1.5.dev2506py3-none-any.whl → 1.5.dev2508py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (787) hide show

monai/__init__.py +1 -1
monai/_version.py +3 -3
monai/apps/auto3dseg/transforms.py +1 -4
monai/data/utils.py +6 -13
monai/handlers/__init__.py +1 -0
monai/handlers/average_precision.py +53 -0
monai/inferers/inferer.py +10 -7
monai/inferers/utils.py +1 -2
monai/losses/dice.py +2 -14
monai/losses/ds_loss.py +1 -3
monai/metrics/__init__.py +1 -0
monai/metrics/average_precision.py +187 -0
monai/networks/layers/simplelayers.py +2 -14
monai/networks/utils.py +4 -16
monai/transforms/compose.py +28 -11
monai/transforms/croppad/array.py +1 -6
monai/transforms/io/array.py +0 -1
monai/transforms/transform.py +15 -6
monai/transforms/utility/array.py +2 -12
monai/transforms/utils.py +1 -2
monai/transforms/utils_pytorch_numpy_unification.py +2 -4
monai/utils/enums.py +3 -2
monai/utils/module.py +6 -6
monai/utils/tf32.py +0 -10
monai/visualize/class_activation_maps.py +5 -8
{monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
{monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
tests/apps/__init__.py +10 -0
tests/apps/deepedit/__init__.py +10 -0
tests/apps/deepedit/test_deepedit_transforms.py +314 -0
tests/apps/deepgrow/__init__.py +10 -0
tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
tests/apps/deepgrow/transforms/__init__.py +10 -0
tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
tests/apps/detection/__init__.py +10 -0
tests/apps/detection/metrics/__init__.py +10 -0
tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
tests/apps/detection/networks/__init__.py +10 -0
tests/apps/detection/networks/test_retinanet.py +210 -0
tests/apps/detection/networks/test_retinanet_detector.py +203 -0
tests/apps/detection/test_box_transform.py +370 -0
tests/apps/detection/utils/__init__.py +10 -0
tests/apps/detection/utils/test_anchor_box.py +88 -0
tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
tests/apps/detection/utils/test_box_coder.py +43 -0
tests/apps/detection/utils/test_detector_boxselector.py +67 -0
tests/apps/detection/utils/test_detector_utils.py +96 -0
tests/apps/detection/utils/test_hardnegsampler.py +54 -0
tests/apps/nuclick/__init__.py +10 -0
tests/apps/nuclick/test_nuclick_transforms.py +259 -0
tests/apps/pathology/__init__.py +10 -0
tests/apps/pathology/handlers/__init__.py +10 -0
tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
tests/apps/pathology/test_lesion_froc.py +333 -0
tests/apps/pathology/test_pathology_prob_nms.py +55 -0
tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
tests/apps/pathology/transforms/__init__.py +10 -0
tests/apps/pathology/transforms/post/__init__.py +10 -0
tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
tests/apps/pathology/transforms/post/test_watershed.py +60 -0
tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
tests/apps/reconstruction/__init__.py +10 -0
tests/apps/reconstruction/nets/__init__.py +10 -0
tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
tests/apps/reconstruction/test_complex_utils.py +77 -0
tests/apps/reconstruction/test_fastmri_reader.py +82 -0
tests/apps/reconstruction/test_mri_utils.py +37 -0
tests/apps/reconstruction/transforms/__init__.py +10 -0
tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
tests/apps/test_auto3dseg_bundlegen.py +156 -0
tests/apps/test_check_hash.py +53 -0
tests/apps/test_cross_validation.py +74 -0
tests/apps/test_decathlondataset.py +93 -0
tests/apps/test_download_and_extract.py +70 -0
tests/apps/test_download_url_yandex.py +45 -0
tests/apps/test_mednistdataset.py +72 -0
tests/apps/test_mmar_download.py +154 -0
tests/apps/test_tciadataset.py +123 -0
tests/apps/vista3d/__init__.py +10 -0
tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
tests/apps/vista3d/test_vista3d_sampler.py +100 -0
tests/apps/vista3d/test_vista3d_transforms.py +94 -0
tests/bundle/__init__.py +10 -0
tests/bundle/test_bundle_ckpt_export.py +107 -0
tests/bundle/test_bundle_download.py +435 -0
tests/bundle/test_bundle_get_data.py +94 -0
tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
tests/bundle/test_bundle_trt_export.py +147 -0
tests/bundle/test_bundle_utils.py +149 -0
tests/bundle/test_bundle_verify_metadata.py +66 -0
tests/bundle/test_bundle_verify_net.py +76 -0
tests/bundle/test_bundle_workflow.py +272 -0
tests/bundle/test_component_locator.py +38 -0
tests/bundle/test_config_item.py +138 -0
tests/bundle/test_config_parser.py +392 -0
tests/bundle/test_reference_resolver.py +114 -0
tests/config/__init__.py +10 -0
tests/config/test_cv2_dist.py +53 -0
tests/engines/__init__.py +10 -0
tests/engines/test_ensemble_evaluator.py +94 -0
tests/engines/test_prepare_batch_default.py +76 -0
tests/engines/test_prepare_batch_default_dist.py +76 -0
tests/engines/test_prepare_batch_diffusion.py +104 -0
tests/engines/test_prepare_batch_extra_input.py +80 -0
tests/fl/__init__.py +10 -0
tests/fl/monai_algo/__init__.py +10 -0
tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
tests/fl/test_fl_monai_algo_stats.py +81 -0
tests/fl/utils/__init__.py +10 -0
tests/fl/utils/test_fl_exchange_object.py +63 -0
tests/handlers/__init__.py +10 -0
tests/handlers/test_handler_average_precision.py +79 -0
tests/handlers/test_handler_checkpoint_loader.py +182 -0
tests/handlers/test_handler_checkpoint_saver.py +233 -0
tests/handlers/test_handler_classification_saver.py +64 -0
tests/handlers/test_handler_classification_saver_dist.py +77 -0
tests/handlers/test_handler_clearml_image.py +65 -0
tests/handlers/test_handler_clearml_stats.py +65 -0
tests/handlers/test_handler_confusion_matrix.py +104 -0
tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
tests/handlers/test_handler_decollate_batch.py +66 -0
tests/handlers/test_handler_early_stop.py +68 -0
tests/handlers/test_handler_garbage_collector.py +73 -0
tests/handlers/test_handler_hausdorff_distance.py +111 -0
tests/handlers/test_handler_ignite_metric.py +191 -0
tests/handlers/test_handler_lr_scheduler.py +94 -0
tests/handlers/test_handler_mean_dice.py +98 -0
tests/handlers/test_handler_mean_iou.py +76 -0
tests/handlers/test_handler_metrics_reloaded.py +149 -0
tests/handlers/test_handler_metrics_saver.py +89 -0
tests/handlers/test_handler_metrics_saver_dist.py +120 -0
tests/handlers/test_handler_mlflow.py +296 -0
tests/handlers/test_handler_nvtx.py +93 -0
tests/handlers/test_handler_panoptic_quality.py +89 -0
tests/handlers/test_handler_parameter_scheduler.py +136 -0
tests/handlers/test_handler_post_processing.py +74 -0
tests/handlers/test_handler_prob_map_producer.py +111 -0
tests/handlers/test_handler_regression_metrics.py +160 -0
tests/handlers/test_handler_regression_metrics_dist.py +245 -0
tests/handlers/test_handler_rocauc.py +48 -0
tests/handlers/test_handler_rocauc_dist.py +54 -0
tests/handlers/test_handler_stats.py +281 -0
tests/handlers/test_handler_surface_distance.py +113 -0
tests/handlers/test_handler_tb_image.py +61 -0
tests/handlers/test_handler_tb_stats.py +166 -0
tests/handlers/test_handler_validation.py +59 -0
tests/handlers/test_trt_compile.py +145 -0
tests/handlers/test_write_metrics_reports.py +68 -0
tests/inferers/__init__.py +10 -0
tests/inferers/test_avg_merger.py +179 -0
tests/inferers/test_controlnet_inferers.py +1388 -0
tests/inferers/test_diffusion_inferer.py +236 -0
tests/inferers/test_latent_diffusion_inferer.py +884 -0
tests/inferers/test_patch_inferer.py +309 -0
tests/inferers/test_saliency_inferer.py +55 -0
tests/inferers/test_slice_inferer.py +57 -0
tests/inferers/test_sliding_window_inference.py +377 -0
tests/inferers/test_sliding_window_splitter.py +284 -0
tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
tests/inferers/test_zarr_avg_merger.py +326 -0
tests/integration/__init__.py +10 -0
tests/integration/test_auto3dseg_ensemble.py +211 -0
tests/integration/test_auto3dseg_hpo.py +189 -0
tests/integration/test_deepedit_interaction.py +122 -0
tests/integration/test_downsample_block.py +50 -0
tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
tests/integration/test_integration_autorunner.py +201 -0
tests/integration/test_integration_bundle_run.py +240 -0
tests/integration/test_integration_classification_2d.py +282 -0
tests/integration/test_integration_determinism.py +95 -0
tests/integration/test_integration_fast_train.py +231 -0
tests/integration/test_integration_gpu_customization.py +159 -0
tests/integration/test_integration_lazy_samples.py +219 -0
tests/integration/test_integration_nnunetv2_runner.py +96 -0
tests/integration/test_integration_segmentation_3d.py +304 -0
tests/integration/test_integration_sliding_window.py +100 -0
tests/integration/test_integration_stn.py +133 -0
tests/integration/test_integration_unet_2d.py +67 -0
tests/integration/test_integration_workers.py +61 -0
tests/integration/test_integration_workflows.py +365 -0
tests/integration/test_integration_workflows_adversarial.py +173 -0
tests/integration/test_integration_workflows_gan.py +158 -0
tests/integration/test_loader_semaphore.py +48 -0
tests/integration/test_mapping_filed.py +122 -0
tests/integration/test_meta_affine.py +183 -0
tests/integration/test_metatensor_integration.py +114 -0
tests/integration/test_module_list.py +76 -0
tests/integration/test_one_of.py +283 -0
tests/integration/test_pad_collation.py +124 -0
tests/integration/test_reg_loss_integration.py +107 -0
tests/integration/test_retinanet_predict_utils.py +154 -0
tests/integration/test_seg_loss_integration.py +159 -0
tests/integration/test_spatial_combine_transforms.py +185 -0
tests/integration/test_testtimeaugmentation.py +186 -0
tests/integration/test_vis_gradbased.py +69 -0
tests/integration/test_vista3d_utils.py +159 -0
tests/losses/__init__.py +10 -0
tests/losses/deform/__init__.py +10 -0
tests/losses/deform/test_bending_energy.py +88 -0
tests/losses/deform/test_diffusion_loss.py +117 -0
tests/losses/image_dissimilarity/__init__.py +10 -0
tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
tests/losses/test_adversarial_loss.py +94 -0
tests/losses/test_barlow_twins_loss.py +109 -0
tests/losses/test_cldice_loss.py +51 -0
tests/losses/test_contrastive_loss.py +86 -0
tests/losses/test_dice_ce_loss.py +123 -0
tests/losses/test_dice_focal_loss.py +124 -0
tests/losses/test_dice_loss.py +227 -0
tests/losses/test_ds_loss.py +189 -0
tests/losses/test_focal_loss.py +379 -0
tests/losses/test_generalized_dice_focal_loss.py +85 -0
tests/losses/test_generalized_dice_loss.py +221 -0
tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
tests/losses/test_giou_loss.py +62 -0
tests/losses/test_hausdorff_loss.py +264 -0
tests/losses/test_masked_dice_loss.py +152 -0
tests/losses/test_masked_loss.py +87 -0
tests/losses/test_multi_scale.py +86 -0
tests/losses/test_nacl_loss.py +167 -0
tests/losses/test_perceptual_loss.py +122 -0
tests/losses/test_spectral_loss.py +86 -0
tests/losses/test_ssim_loss.py +59 -0
tests/losses/test_sure_loss.py +72 -0
tests/losses/test_tversky_loss.py +198 -0
tests/losses/test_unified_focal_loss.py +66 -0
tests/metrics/__init__.py +10 -0
tests/metrics/test_compute_average_precision.py +162 -0
tests/metrics/test_compute_confusion_matrix.py +294 -0
tests/metrics/test_compute_f_beta.py +80 -0
tests/metrics/test_compute_fid_metric.py +40 -0
tests/metrics/test_compute_froc.py +143 -0
tests/metrics/test_compute_generalized_dice.py +240 -0
tests/metrics/test_compute_meandice.py +306 -0
tests/metrics/test_compute_meaniou.py +223 -0
tests/metrics/test_compute_mmd_metric.py +56 -0
tests/metrics/test_compute_multiscalessim_metric.py +83 -0
tests/metrics/test_compute_panoptic_quality.py +113 -0
tests/metrics/test_compute_regression_metrics.py +196 -0
tests/metrics/test_compute_roc_auc.py +155 -0
tests/metrics/test_compute_variance.py +147 -0
tests/metrics/test_cumulative.py +63 -0
tests/metrics/test_cumulative_average.py +74 -0
tests/metrics/test_cumulative_average_dist.py +48 -0
tests/metrics/test_hausdorff_distance.py +209 -0
tests/metrics/test_label_quality_score.py +134 -0
tests/metrics/test_loss_metric.py +57 -0
tests/metrics/test_metrics_reloaded.py +96 -0
tests/metrics/test_ssim_metric.py +78 -0
tests/metrics/test_surface_dice.py +416 -0
tests/metrics/test_surface_distance.py +186 -0
tests/networks/__init__.py +10 -0
tests/networks/blocks/__init__.py +10 -0
tests/networks/blocks/dints_block/__init__.py +10 -0
tests/networks/blocks/dints_block/test_acn_block.py +41 -0
tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
tests/networks/blocks/test_adn.py +86 -0
tests/networks/blocks/test_convolutions.py +156 -0
tests/networks/blocks/test_crf_cpu.py +513 -0
tests/networks/blocks/test_crf_cuda.py +528 -0
tests/networks/blocks/test_crossattention.py +185 -0
tests/networks/blocks/test_denseblock.py +105 -0
tests/networks/blocks/test_dynunet_block.py +116 -0
tests/networks/blocks/test_fpn_block.py +88 -0
tests/networks/blocks/test_localnet_block.py +121 -0
tests/networks/blocks/test_mlp.py +78 -0
tests/networks/blocks/test_patchembedding.py +212 -0
tests/networks/blocks/test_regunet_block.py +103 -0
tests/networks/blocks/test_se_block.py +85 -0
tests/networks/blocks/test_se_blocks.py +78 -0
tests/networks/blocks/test_segresnet_block.py +57 -0
tests/networks/blocks/test_selfattention.py +232 -0
tests/networks/blocks/test_simple_aspp.py +87 -0
tests/networks/blocks/test_spatialattention.py +55 -0
tests/networks/blocks/test_subpixel_upsample.py +87 -0
tests/networks/blocks/test_text_encoding.py +49 -0
tests/networks/blocks/test_transformerblock.py +90 -0
tests/networks/blocks/test_unetr_block.py +158 -0
tests/networks/blocks/test_upsample_block.py +134 -0
tests/networks/blocks/warp/__init__.py +10 -0
tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
tests/networks/blocks/warp/test_warp.py +250 -0
tests/networks/layers/__init__.py +10 -0
tests/networks/layers/filtering/__init__.py +10 -0
tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
tests/networks/layers/filtering/test_phl_cpu.py +259 -0
tests/networks/layers/filtering/test_phl_cuda.py +167 -0
tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
tests/networks/layers/test_affine_transform.py +385 -0
tests/networks/layers/test_apply_filter.py +89 -0
tests/networks/layers/test_channel_pad.py +51 -0
tests/networks/layers/test_conjugate_gradient.py +56 -0
tests/networks/layers/test_drop_path.py +46 -0
tests/networks/layers/test_gaussian.py +317 -0
tests/networks/layers/test_gaussian_filter.py +206 -0
tests/networks/layers/test_get_layers.py +65 -0
tests/networks/layers/test_gmm.py +314 -0
tests/networks/layers/test_grid_pull.py +93 -0
tests/networks/layers/test_hilbert_transform.py +131 -0
tests/networks/layers/test_lltm.py +62 -0
tests/networks/layers/test_median_filter.py +52 -0
tests/networks/layers/test_polyval.py +55 -0
tests/networks/layers/test_preset_filters.py +136 -0
tests/networks/layers/test_savitzky_golay_filter.py +141 -0
tests/networks/layers/test_separable_filter.py +87 -0
tests/networks/layers/test_skip_connection.py +48 -0
tests/networks/layers/test_vector_quantizer.py +89 -0
tests/networks/layers/test_weight_init.py +50 -0
tests/networks/nets/__init__.py +10 -0
tests/networks/nets/dints/__init__.py +10 -0
tests/networks/nets/dints/test_dints_cell.py +110 -0
tests/networks/nets/dints/test_dints_mixop.py +84 -0
tests/networks/nets/regunet/__init__.py +10 -0
tests/networks/nets/regunet/test_localnet.py +86 -0
tests/networks/nets/regunet/test_regunet.py +88 -0
tests/networks/nets/test_ahnet.py +224 -0
tests/networks/nets/test_attentionunet.py +88 -0
tests/networks/nets/test_autoencoder.py +95 -0
tests/networks/nets/test_autoencoderkl.py +337 -0
tests/networks/nets/test_basic_unet.py +102 -0
tests/networks/nets/test_basic_unetplusplus.py +109 -0
tests/networks/nets/test_bundle_init_bundle.py +55 -0
tests/networks/nets/test_cell_sam_wrapper.py +58 -0
tests/networks/nets/test_controlnet.py +215 -0
tests/networks/nets/test_daf3d.py +62 -0
tests/networks/nets/test_densenet.py +121 -0
tests/networks/nets/test_diffusion_model_unet.py +585 -0
tests/networks/nets/test_dints_network.py +168 -0
tests/networks/nets/test_discriminator.py +59 -0
tests/networks/nets/test_dynunet.py +181 -0
tests/networks/nets/test_efficientnet.py +400 -0
tests/networks/nets/test_flexible_unet.py +341 -0
tests/networks/nets/test_fullyconnectednet.py +69 -0
tests/networks/nets/test_generator.py +59 -0
tests/networks/nets/test_globalnet.py +103 -0
tests/networks/nets/test_highresnet.py +67 -0
tests/networks/nets/test_hovernet.py +218 -0
tests/networks/nets/test_mednext.py +122 -0
tests/networks/nets/test_milmodel.py +92 -0
tests/networks/nets/test_net_adapter.py +68 -0
tests/networks/nets/test_network_consistency.py +86 -0
tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
tests/networks/nets/test_quicknat.py +57 -0
tests/networks/nets/test_resnet.py +340 -0
tests/networks/nets/test_segresnet.py +120 -0
tests/networks/nets/test_segresnet_ds.py +156 -0
tests/networks/nets/test_senet.py +151 -0
tests/networks/nets/test_spade_autoencoderkl.py +295 -0
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tests/visualize/utils/test_matshow3d.py +133 -0
monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
{monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
{monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0

monai_weekly-1.5.dev2506.dist-info/RECORD DELETED Viewed

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