monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (787) hide show
  1. monai/__init__.py +1 -1
  2. monai/_version.py +3 -3
  3. monai/apps/auto3dseg/transforms.py +1 -4
  4. monai/data/utils.py +6 -13
  5. monai/handlers/__init__.py +1 -0
  6. monai/handlers/average_precision.py +53 -0
  7. monai/inferers/inferer.py +10 -7
  8. monai/inferers/utils.py +1 -2
  9. monai/losses/dice.py +2 -14
  10. monai/losses/ds_loss.py +1 -3
  11. monai/metrics/__init__.py +1 -0
  12. monai/metrics/average_precision.py +187 -0
  13. monai/networks/layers/simplelayers.py +2 -14
  14. monai/networks/utils.py +4 -16
  15. monai/transforms/compose.py +28 -11
  16. monai/transforms/croppad/array.py +1 -6
  17. monai/transforms/io/array.py +0 -1
  18. monai/transforms/transform.py +15 -6
  19. monai/transforms/utility/array.py +2 -12
  20. monai/transforms/utils.py +1 -2
  21. monai/transforms/utils_pytorch_numpy_unification.py +2 -4
  22. monai/utils/enums.py +3 -2
  23. monai/utils/module.py +6 -6
  24. monai/utils/tf32.py +0 -10
  25. monai/visualize/class_activation_maps.py +5 -8
  26. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
  27. monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
  28. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
  29. tests/apps/__init__.py +10 -0
  30. tests/apps/deepedit/__init__.py +10 -0
  31. tests/apps/deepedit/test_deepedit_transforms.py +314 -0
  32. tests/apps/deepgrow/__init__.py +10 -0
  33. tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
  34. tests/apps/deepgrow/transforms/__init__.py +10 -0
  35. tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
  36. tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
  37. tests/apps/detection/__init__.py +10 -0
  38. tests/apps/detection/metrics/__init__.py +10 -0
  39. tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
  40. tests/apps/detection/networks/__init__.py +10 -0
  41. tests/apps/detection/networks/test_retinanet.py +210 -0
  42. tests/apps/detection/networks/test_retinanet_detector.py +203 -0
  43. tests/apps/detection/test_box_transform.py +370 -0
  44. tests/apps/detection/utils/__init__.py +10 -0
  45. tests/apps/detection/utils/test_anchor_box.py +88 -0
  46. tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
  47. tests/apps/detection/utils/test_box_coder.py +43 -0
  48. tests/apps/detection/utils/test_detector_boxselector.py +67 -0
  49. tests/apps/detection/utils/test_detector_utils.py +96 -0
  50. tests/apps/detection/utils/test_hardnegsampler.py +54 -0
  51. tests/apps/nuclick/__init__.py +10 -0
  52. tests/apps/nuclick/test_nuclick_transforms.py +259 -0
  53. tests/apps/pathology/__init__.py +10 -0
  54. tests/apps/pathology/handlers/__init__.py +10 -0
  55. tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
  56. tests/apps/pathology/test_lesion_froc.py +333 -0
  57. tests/apps/pathology/test_pathology_prob_nms.py +55 -0
  58. tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
  59. tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
  60. tests/apps/pathology/transforms/__init__.py +10 -0
  61. tests/apps/pathology/transforms/post/__init__.py +10 -0
  62. tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
  63. tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
  64. tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
  65. tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
  66. tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
  67. tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
  68. tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
  69. tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
  70. tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
  71. tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
  72. tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
  73. tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
  74. tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
  75. tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
  76. tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
  77. tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
  78. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
  79. tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
  80. tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
  81. tests/apps/pathology/transforms/post/test_watershed.py +60 -0
  82. tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
  83. tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
  84. tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
  85. tests/apps/reconstruction/__init__.py +10 -0
  86. tests/apps/reconstruction/nets/__init__.py +10 -0
  87. tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
  88. tests/apps/reconstruction/test_complex_utils.py +77 -0
  89. tests/apps/reconstruction/test_fastmri_reader.py +82 -0
  90. tests/apps/reconstruction/test_mri_utils.py +37 -0
  91. tests/apps/reconstruction/transforms/__init__.py +10 -0
  92. tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
  93. tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
  94. tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
  95. tests/apps/test_auto3dseg_bundlegen.py +156 -0
  96. tests/apps/test_check_hash.py +53 -0
  97. tests/apps/test_cross_validation.py +74 -0
  98. tests/apps/test_decathlondataset.py +93 -0
  99. tests/apps/test_download_and_extract.py +70 -0
  100. tests/apps/test_download_url_yandex.py +45 -0
  101. tests/apps/test_mednistdataset.py +72 -0
  102. tests/apps/test_mmar_download.py +154 -0
  103. tests/apps/test_tciadataset.py +123 -0
  104. tests/apps/vista3d/__init__.py +10 -0
  105. tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
  106. tests/apps/vista3d/test_vista3d_sampler.py +100 -0
  107. tests/apps/vista3d/test_vista3d_transforms.py +94 -0
  108. tests/bundle/__init__.py +10 -0
  109. tests/bundle/test_bundle_ckpt_export.py +107 -0
  110. tests/bundle/test_bundle_download.py +435 -0
  111. tests/bundle/test_bundle_get_data.py +94 -0
  112. tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
  113. tests/bundle/test_bundle_trt_export.py +147 -0
  114. tests/bundle/test_bundle_utils.py +149 -0
  115. tests/bundle/test_bundle_verify_metadata.py +66 -0
  116. tests/bundle/test_bundle_verify_net.py +76 -0
  117. tests/bundle/test_bundle_workflow.py +272 -0
  118. tests/bundle/test_component_locator.py +38 -0
  119. tests/bundle/test_config_item.py +138 -0
  120. tests/bundle/test_config_parser.py +392 -0
  121. tests/bundle/test_reference_resolver.py +114 -0
  122. tests/config/__init__.py +10 -0
  123. tests/config/test_cv2_dist.py +53 -0
  124. tests/engines/__init__.py +10 -0
  125. tests/engines/test_ensemble_evaluator.py +94 -0
  126. tests/engines/test_prepare_batch_default.py +76 -0
  127. tests/engines/test_prepare_batch_default_dist.py +76 -0
  128. tests/engines/test_prepare_batch_diffusion.py +104 -0
  129. tests/engines/test_prepare_batch_extra_input.py +80 -0
  130. tests/fl/__init__.py +10 -0
  131. tests/fl/monai_algo/__init__.py +10 -0
  132. tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
  133. tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
  134. tests/fl/test_fl_monai_algo_stats.py +81 -0
  135. tests/fl/utils/__init__.py +10 -0
  136. tests/fl/utils/test_fl_exchange_object.py +63 -0
  137. tests/handlers/__init__.py +10 -0
  138. tests/handlers/test_handler_average_precision.py +79 -0
  139. tests/handlers/test_handler_checkpoint_loader.py +182 -0
  140. tests/handlers/test_handler_checkpoint_saver.py +233 -0
  141. tests/handlers/test_handler_classification_saver.py +64 -0
  142. tests/handlers/test_handler_classification_saver_dist.py +77 -0
  143. tests/handlers/test_handler_clearml_image.py +65 -0
  144. tests/handlers/test_handler_clearml_stats.py +65 -0
  145. tests/handlers/test_handler_confusion_matrix.py +104 -0
  146. tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
  147. tests/handlers/test_handler_decollate_batch.py +66 -0
  148. tests/handlers/test_handler_early_stop.py +68 -0
  149. tests/handlers/test_handler_garbage_collector.py +73 -0
  150. tests/handlers/test_handler_hausdorff_distance.py +111 -0
  151. tests/handlers/test_handler_ignite_metric.py +191 -0
  152. tests/handlers/test_handler_lr_scheduler.py +94 -0
  153. tests/handlers/test_handler_mean_dice.py +98 -0
  154. tests/handlers/test_handler_mean_iou.py +76 -0
  155. tests/handlers/test_handler_metrics_reloaded.py +149 -0
  156. tests/handlers/test_handler_metrics_saver.py +89 -0
  157. tests/handlers/test_handler_metrics_saver_dist.py +120 -0
  158. tests/handlers/test_handler_mlflow.py +296 -0
  159. tests/handlers/test_handler_nvtx.py +93 -0
  160. tests/handlers/test_handler_panoptic_quality.py +89 -0
  161. tests/handlers/test_handler_parameter_scheduler.py +136 -0
  162. tests/handlers/test_handler_post_processing.py +74 -0
  163. tests/handlers/test_handler_prob_map_producer.py +111 -0
  164. tests/handlers/test_handler_regression_metrics.py +160 -0
  165. tests/handlers/test_handler_regression_metrics_dist.py +245 -0
  166. tests/handlers/test_handler_rocauc.py +48 -0
  167. tests/handlers/test_handler_rocauc_dist.py +54 -0
  168. tests/handlers/test_handler_stats.py +281 -0
  169. tests/handlers/test_handler_surface_distance.py +113 -0
  170. tests/handlers/test_handler_tb_image.py +61 -0
  171. tests/handlers/test_handler_tb_stats.py +166 -0
  172. tests/handlers/test_handler_validation.py +59 -0
  173. tests/handlers/test_trt_compile.py +145 -0
  174. tests/handlers/test_write_metrics_reports.py +68 -0
  175. tests/inferers/__init__.py +10 -0
  176. tests/inferers/test_avg_merger.py +179 -0
  177. tests/inferers/test_controlnet_inferers.py +1388 -0
  178. tests/inferers/test_diffusion_inferer.py +236 -0
  179. tests/inferers/test_latent_diffusion_inferer.py +884 -0
  180. tests/inferers/test_patch_inferer.py +309 -0
  181. tests/inferers/test_saliency_inferer.py +55 -0
  182. tests/inferers/test_slice_inferer.py +57 -0
  183. tests/inferers/test_sliding_window_inference.py +377 -0
  184. tests/inferers/test_sliding_window_splitter.py +284 -0
  185. tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
  186. tests/inferers/test_zarr_avg_merger.py +326 -0
  187. tests/integration/__init__.py +10 -0
  188. tests/integration/test_auto3dseg_ensemble.py +211 -0
  189. tests/integration/test_auto3dseg_hpo.py +189 -0
  190. tests/integration/test_deepedit_interaction.py +122 -0
  191. tests/integration/test_downsample_block.py +50 -0
  192. tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
  193. tests/integration/test_integration_autorunner.py +201 -0
  194. tests/integration/test_integration_bundle_run.py +240 -0
  195. tests/integration/test_integration_classification_2d.py +282 -0
  196. tests/integration/test_integration_determinism.py +95 -0
  197. tests/integration/test_integration_fast_train.py +231 -0
  198. tests/integration/test_integration_gpu_customization.py +159 -0
  199. tests/integration/test_integration_lazy_samples.py +219 -0
  200. tests/integration/test_integration_nnunetv2_runner.py +96 -0
  201. tests/integration/test_integration_segmentation_3d.py +304 -0
  202. tests/integration/test_integration_sliding_window.py +100 -0
  203. tests/integration/test_integration_stn.py +133 -0
  204. tests/integration/test_integration_unet_2d.py +67 -0
  205. tests/integration/test_integration_workers.py +61 -0
  206. tests/integration/test_integration_workflows.py +365 -0
  207. tests/integration/test_integration_workflows_adversarial.py +173 -0
  208. tests/integration/test_integration_workflows_gan.py +158 -0
  209. tests/integration/test_loader_semaphore.py +48 -0
  210. tests/integration/test_mapping_filed.py +122 -0
  211. tests/integration/test_meta_affine.py +183 -0
  212. tests/integration/test_metatensor_integration.py +114 -0
  213. tests/integration/test_module_list.py +76 -0
  214. tests/integration/test_one_of.py +283 -0
  215. tests/integration/test_pad_collation.py +124 -0
  216. tests/integration/test_reg_loss_integration.py +107 -0
  217. tests/integration/test_retinanet_predict_utils.py +154 -0
  218. tests/integration/test_seg_loss_integration.py +159 -0
  219. tests/integration/test_spatial_combine_transforms.py +185 -0
  220. tests/integration/test_testtimeaugmentation.py +186 -0
  221. tests/integration/test_vis_gradbased.py +69 -0
  222. tests/integration/test_vista3d_utils.py +159 -0
  223. tests/losses/__init__.py +10 -0
  224. tests/losses/deform/__init__.py +10 -0
  225. tests/losses/deform/test_bending_energy.py +88 -0
  226. tests/losses/deform/test_diffusion_loss.py +117 -0
  227. tests/losses/image_dissimilarity/__init__.py +10 -0
  228. tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
  229. tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
  230. tests/losses/test_adversarial_loss.py +94 -0
  231. tests/losses/test_barlow_twins_loss.py +109 -0
  232. tests/losses/test_cldice_loss.py +51 -0
  233. tests/losses/test_contrastive_loss.py +86 -0
  234. tests/losses/test_dice_ce_loss.py +123 -0
  235. tests/losses/test_dice_focal_loss.py +124 -0
  236. tests/losses/test_dice_loss.py +227 -0
  237. tests/losses/test_ds_loss.py +189 -0
  238. tests/losses/test_focal_loss.py +379 -0
  239. tests/losses/test_generalized_dice_focal_loss.py +85 -0
  240. tests/losses/test_generalized_dice_loss.py +221 -0
  241. tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
  242. tests/losses/test_giou_loss.py +62 -0
  243. tests/losses/test_hausdorff_loss.py +264 -0
  244. tests/losses/test_masked_dice_loss.py +152 -0
  245. tests/losses/test_masked_loss.py +87 -0
  246. tests/losses/test_multi_scale.py +86 -0
  247. tests/losses/test_nacl_loss.py +167 -0
  248. tests/losses/test_perceptual_loss.py +122 -0
  249. tests/losses/test_spectral_loss.py +86 -0
  250. tests/losses/test_ssim_loss.py +59 -0
  251. tests/losses/test_sure_loss.py +72 -0
  252. tests/losses/test_tversky_loss.py +198 -0
  253. tests/losses/test_unified_focal_loss.py +66 -0
  254. tests/metrics/__init__.py +10 -0
  255. tests/metrics/test_compute_average_precision.py +162 -0
  256. tests/metrics/test_compute_confusion_matrix.py +294 -0
  257. tests/metrics/test_compute_f_beta.py +80 -0
  258. tests/metrics/test_compute_fid_metric.py +40 -0
  259. tests/metrics/test_compute_froc.py +143 -0
  260. tests/metrics/test_compute_generalized_dice.py +240 -0
  261. tests/metrics/test_compute_meandice.py +306 -0
  262. tests/metrics/test_compute_meaniou.py +223 -0
  263. tests/metrics/test_compute_mmd_metric.py +56 -0
  264. tests/metrics/test_compute_multiscalessim_metric.py +83 -0
  265. tests/metrics/test_compute_panoptic_quality.py +113 -0
  266. tests/metrics/test_compute_regression_metrics.py +196 -0
  267. tests/metrics/test_compute_roc_auc.py +155 -0
  268. tests/metrics/test_compute_variance.py +147 -0
  269. tests/metrics/test_cumulative.py +63 -0
  270. tests/metrics/test_cumulative_average.py +74 -0
  271. tests/metrics/test_cumulative_average_dist.py +48 -0
  272. tests/metrics/test_hausdorff_distance.py +209 -0
  273. tests/metrics/test_label_quality_score.py +134 -0
  274. tests/metrics/test_loss_metric.py +57 -0
  275. tests/metrics/test_metrics_reloaded.py +96 -0
  276. tests/metrics/test_ssim_metric.py +78 -0
  277. tests/metrics/test_surface_dice.py +416 -0
  278. tests/metrics/test_surface_distance.py +186 -0
  279. tests/networks/__init__.py +10 -0
  280. tests/networks/blocks/__init__.py +10 -0
  281. tests/networks/blocks/dints_block/__init__.py +10 -0
  282. tests/networks/blocks/dints_block/test_acn_block.py +41 -0
  283. tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
  284. tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
  285. tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
  286. tests/networks/blocks/test_adn.py +86 -0
  287. tests/networks/blocks/test_convolutions.py +156 -0
  288. tests/networks/blocks/test_crf_cpu.py +513 -0
  289. tests/networks/blocks/test_crf_cuda.py +528 -0
  290. tests/networks/blocks/test_crossattention.py +185 -0
  291. tests/networks/blocks/test_denseblock.py +105 -0
  292. tests/networks/blocks/test_dynunet_block.py +116 -0
  293. tests/networks/blocks/test_fpn_block.py +88 -0
  294. tests/networks/blocks/test_localnet_block.py +121 -0
  295. tests/networks/blocks/test_mlp.py +78 -0
  296. tests/networks/blocks/test_patchembedding.py +212 -0
  297. tests/networks/blocks/test_regunet_block.py +103 -0
  298. tests/networks/blocks/test_se_block.py +85 -0
  299. tests/networks/blocks/test_se_blocks.py +78 -0
  300. tests/networks/blocks/test_segresnet_block.py +57 -0
  301. tests/networks/blocks/test_selfattention.py +232 -0
  302. tests/networks/blocks/test_simple_aspp.py +87 -0
  303. tests/networks/blocks/test_spatialattention.py +55 -0
  304. tests/networks/blocks/test_subpixel_upsample.py +87 -0
  305. tests/networks/blocks/test_text_encoding.py +49 -0
  306. tests/networks/blocks/test_transformerblock.py +90 -0
  307. tests/networks/blocks/test_unetr_block.py +158 -0
  308. tests/networks/blocks/test_upsample_block.py +134 -0
  309. tests/networks/blocks/warp/__init__.py +10 -0
  310. tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
  311. tests/networks/blocks/warp/test_warp.py +250 -0
  312. tests/networks/layers/__init__.py +10 -0
  313. tests/networks/layers/filtering/__init__.py +10 -0
  314. tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
  315. tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
  316. tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
  317. tests/networks/layers/filtering/test_phl_cpu.py +259 -0
  318. tests/networks/layers/filtering/test_phl_cuda.py +167 -0
  319. tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
  320. tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
  321. tests/networks/layers/test_affine_transform.py +385 -0
  322. tests/networks/layers/test_apply_filter.py +89 -0
  323. tests/networks/layers/test_channel_pad.py +51 -0
  324. tests/networks/layers/test_conjugate_gradient.py +56 -0
  325. tests/networks/layers/test_drop_path.py +46 -0
  326. tests/networks/layers/test_gaussian.py +317 -0
  327. tests/networks/layers/test_gaussian_filter.py +206 -0
  328. tests/networks/layers/test_get_layers.py +65 -0
  329. tests/networks/layers/test_gmm.py +314 -0
  330. tests/networks/layers/test_grid_pull.py +93 -0
  331. tests/networks/layers/test_hilbert_transform.py +131 -0
  332. tests/networks/layers/test_lltm.py +62 -0
  333. tests/networks/layers/test_median_filter.py +52 -0
  334. tests/networks/layers/test_polyval.py +55 -0
  335. tests/networks/layers/test_preset_filters.py +136 -0
  336. tests/networks/layers/test_savitzky_golay_filter.py +141 -0
  337. tests/networks/layers/test_separable_filter.py +87 -0
  338. tests/networks/layers/test_skip_connection.py +48 -0
  339. tests/networks/layers/test_vector_quantizer.py +89 -0
  340. tests/networks/layers/test_weight_init.py +50 -0
  341. tests/networks/nets/__init__.py +10 -0
  342. tests/networks/nets/dints/__init__.py +10 -0
  343. tests/networks/nets/dints/test_dints_cell.py +110 -0
  344. tests/networks/nets/dints/test_dints_mixop.py +84 -0
  345. tests/networks/nets/regunet/__init__.py +10 -0
  346. tests/networks/nets/regunet/test_localnet.py +86 -0
  347. tests/networks/nets/regunet/test_regunet.py +88 -0
  348. tests/networks/nets/test_ahnet.py +224 -0
  349. tests/networks/nets/test_attentionunet.py +88 -0
  350. tests/networks/nets/test_autoencoder.py +95 -0
  351. tests/networks/nets/test_autoencoderkl.py +337 -0
  352. tests/networks/nets/test_basic_unet.py +102 -0
  353. tests/networks/nets/test_basic_unetplusplus.py +109 -0
  354. tests/networks/nets/test_bundle_init_bundle.py +55 -0
  355. tests/networks/nets/test_cell_sam_wrapper.py +58 -0
  356. tests/networks/nets/test_controlnet.py +215 -0
  357. tests/networks/nets/test_daf3d.py +62 -0
  358. tests/networks/nets/test_densenet.py +121 -0
  359. tests/networks/nets/test_diffusion_model_unet.py +585 -0
  360. tests/networks/nets/test_dints_network.py +168 -0
  361. tests/networks/nets/test_discriminator.py +59 -0
  362. tests/networks/nets/test_dynunet.py +181 -0
  363. tests/networks/nets/test_efficientnet.py +400 -0
  364. tests/networks/nets/test_flexible_unet.py +341 -0
  365. tests/networks/nets/test_fullyconnectednet.py +69 -0
  366. tests/networks/nets/test_generator.py +59 -0
  367. tests/networks/nets/test_globalnet.py +103 -0
  368. tests/networks/nets/test_highresnet.py +67 -0
  369. tests/networks/nets/test_hovernet.py +218 -0
  370. tests/networks/nets/test_mednext.py +122 -0
  371. tests/networks/nets/test_milmodel.py +92 -0
  372. tests/networks/nets/test_net_adapter.py +68 -0
  373. tests/networks/nets/test_network_consistency.py +86 -0
  374. tests/networks/nets/test_patch_gan_dicriminator.py +179 -0
  375. tests/networks/nets/test_quicknat.py +57 -0
  376. tests/networks/nets/test_resnet.py +340 -0
  377. tests/networks/nets/test_segresnet.py +120 -0
  378. tests/networks/nets/test_segresnet_ds.py +156 -0
  379. tests/networks/nets/test_senet.py +151 -0
  380. tests/networks/nets/test_spade_autoencoderkl.py +295 -0
  381. tests/networks/nets/test_spade_diffusion_model_unet.py +574 -0
  382. tests/networks/nets/test_spade_vaegan.py +140 -0
  383. tests/networks/nets/test_swin_unetr.py +139 -0
  384. tests/networks/nets/test_torchvision_fc_model.py +201 -0
  385. tests/networks/nets/test_transchex.py +84 -0
  386. tests/networks/nets/test_transformer.py +108 -0
  387. tests/networks/nets/test_unet.py +208 -0
  388. tests/networks/nets/test_unetr.py +137 -0
  389. tests/networks/nets/test_varautoencoder.py +127 -0
  390. tests/networks/nets/test_vista3d.py +84 -0
  391. tests/networks/nets/test_vit.py +139 -0
  392. tests/networks/nets/test_vitautoenc.py +112 -0
  393. tests/networks/nets/test_vnet.py +81 -0
  394. tests/networks/nets/test_voxelmorph.py +280 -0
  395. tests/networks/nets/test_vqvae.py +274 -0
  396. tests/networks/nets/test_vqvaetransformer_inferer.py +295 -0
  397. tests/networks/schedulers/__init__.py +10 -0
  398. tests/networks/schedulers/test_scheduler_ddim.py +83 -0
  399. tests/networks/schedulers/test_scheduler_ddpm.py +104 -0
  400. tests/networks/schedulers/test_scheduler_pndm.py +108 -0
  401. tests/networks/test_bundle_onnx_export.py +71 -0
  402. tests/networks/test_convert_to_onnx.py +106 -0
  403. tests/networks/test_convert_to_torchscript.py +46 -0
  404. tests/networks/test_convert_to_trt.py +79 -0
  405. tests/networks/test_save_state.py +73 -0
  406. tests/networks/test_to_onehot.py +63 -0
  407. tests/networks/test_varnet.py +63 -0
  408. tests/networks/utils/__init__.py +10 -0
  409. tests/networks/utils/test_copy_model_state.py +187 -0
  410. tests/networks/utils/test_eval_mode.py +34 -0
  411. tests/networks/utils/test_freeze_layers.py +61 -0
  412. tests/networks/utils/test_replace_module.py +98 -0
  413. tests/networks/utils/test_train_mode.py +34 -0
  414. tests/optimizers/__init__.py +10 -0
  415. tests/optimizers/test_generate_param_groups.py +105 -0
  416. tests/optimizers/test_lr_finder.py +108 -0
  417. tests/optimizers/test_lr_scheduler.py +71 -0
  418. tests/optimizers/test_optim_novograd.py +100 -0
  419. tests/profile_subclass/__init__.py +10 -0
  420. tests/profile_subclass/cprofile_profiling.py +29 -0
  421. tests/profile_subclass/min_classes.py +30 -0
  422. tests/profile_subclass/profiling.py +73 -0
  423. tests/profile_subclass/pyspy_profiling.py +41 -0
  424. tests/transforms/__init__.py +10 -0
  425. tests/transforms/compose/__init__.py +10 -0
  426. tests/transforms/compose/test_compose.py +758 -0
  427. tests/transforms/compose/test_some_of.py +258 -0
  428. tests/transforms/croppad/__init__.py +10 -0
  429. tests/transforms/croppad/test_rand_weighted_crop.py +224 -0
  430. tests/transforms/croppad/test_rand_weighted_cropd.py +182 -0
  431. tests/transforms/functional/__init__.py +10 -0
  432. tests/transforms/functional/test_apply.py +75 -0
  433. tests/transforms/functional/test_resample.py +50 -0
  434. tests/transforms/intensity/__init__.py +10 -0
  435. tests/transforms/intensity/test_compute_ho_ver_maps.py +75 -0
  436. tests/transforms/intensity/test_compute_ho_ver_maps_d.py +79 -0
  437. tests/transforms/intensity/test_foreground_mask.py +98 -0
  438. tests/transforms/intensity/test_foreground_maskd.py +106 -0
  439. tests/transforms/intensity/test_rand_histogram_shiftd.py +76 -0
  440. tests/transforms/intensity/test_scale_intensity_range_percentiles.py +96 -0
  441. tests/transforms/intensity/test_scale_intensity_range_percentilesd.py +100 -0
  442. tests/transforms/inverse/__init__.py +10 -0
  443. tests/transforms/inverse/test_inverse_array.py +76 -0
  444. tests/transforms/inverse/test_traceable_transform.py +59 -0
  445. tests/transforms/post/__init__.py +10 -0
  446. tests/transforms/post/test_label_filterd.py +78 -0
  447. tests/transforms/post/test_probnms.py +72 -0
  448. tests/transforms/post/test_probnmsd.py +79 -0
  449. tests/transforms/post/test_remove_small_objects.py +102 -0
  450. tests/transforms/spatial/__init__.py +10 -0
  451. tests/transforms/spatial/test_convert_box_points.py +119 -0
  452. tests/transforms/spatial/test_grid_patch.py +134 -0
  453. tests/transforms/spatial/test_grid_patchd.py +102 -0
  454. tests/transforms/spatial/test_rand_grid_patch.py +150 -0
  455. tests/transforms/spatial/test_rand_grid_patchd.py +117 -0
  456. tests/transforms/spatial/test_spatial_resampled.py +124 -0
  457. tests/transforms/test_activations.py +120 -0
  458. tests/transforms/test_activationsd.py +64 -0
  459. tests/transforms/test_adaptors.py +160 -0
  460. tests/transforms/test_add_coordinate_channels.py +53 -0
  461. tests/transforms/test_add_coordinate_channelsd.py +67 -0
  462. tests/transforms/test_add_extreme_points_channel.py +80 -0
  463. tests/transforms/test_add_extreme_points_channeld.py +77 -0
  464. tests/transforms/test_adjust_contrast.py +70 -0
  465. tests/transforms/test_adjust_contrastd.py +64 -0
  466. tests/transforms/test_affine.py +245 -0
  467. tests/transforms/test_affine_grid.py +152 -0
  468. tests/transforms/test_affined.py +190 -0
  469. tests/transforms/test_as_channel_last.py +38 -0
  470. tests/transforms/test_as_channel_lastd.py +44 -0
  471. tests/transforms/test_as_discrete.py +81 -0
  472. tests/transforms/test_as_discreted.py +82 -0
  473. tests/transforms/test_border_pad.py +49 -0
  474. tests/transforms/test_border_padd.py +45 -0
  475. tests/transforms/test_bounding_rect.py +54 -0
  476. tests/transforms/test_bounding_rectd.py +53 -0
  477. tests/transforms/test_cast_to_type.py +63 -0
  478. tests/transforms/test_cast_to_typed.py +74 -0
  479. tests/transforms/test_center_scale_crop.py +55 -0
  480. tests/transforms/test_center_scale_cropd.py +56 -0
  481. tests/transforms/test_center_spatial_crop.py +56 -0
  482. tests/transforms/test_center_spatial_cropd.py +63 -0
  483. tests/transforms/test_classes_to_indices.py +93 -0
  484. tests/transforms/test_classes_to_indicesd.py +110 -0
  485. tests/transforms/test_clip_intensity_percentiles.py +196 -0
  486. tests/transforms/test_clip_intensity_percentilesd.py +193 -0
  487. tests/transforms/test_compose_get_number_conversions.py +127 -0
  488. tests/transforms/test_concat_itemsd.py +82 -0
  489. tests/transforms/test_convert_to_multi_channel.py +59 -0
  490. tests/transforms/test_convert_to_multi_channeld.py +37 -0
  491. tests/transforms/test_copy_itemsd.py +86 -0
  492. tests/transforms/test_create_grid_and_affine.py +274 -0
  493. tests/transforms/test_crop_foreground.py +164 -0
  494. tests/transforms/test_crop_foregroundd.py +205 -0
  495. tests/transforms/test_cucim_dict_transform.py +142 -0
  496. tests/transforms/test_cucim_transform.py +141 -0
  497. tests/transforms/test_data_stats.py +221 -0
  498. tests/transforms/test_data_statsd.py +249 -0
  499. tests/transforms/test_delete_itemsd.py +58 -0
  500. tests/transforms/test_detect_envelope.py +159 -0
  501. tests/transforms/test_distance_transform_edt.py +202 -0
  502. tests/transforms/test_divisible_pad.py +49 -0
  503. tests/transforms/test_divisible_padd.py +42 -0
  504. tests/transforms/test_ensure_channel_first.py +113 -0
  505. tests/transforms/test_ensure_channel_firstd.py +85 -0
  506. tests/transforms/test_ensure_type.py +94 -0
  507. tests/transforms/test_ensure_typed.py +110 -0
  508. tests/transforms/test_fg_bg_to_indices.py +83 -0
  509. tests/transforms/test_fg_bg_to_indicesd.py +78 -0
  510. tests/transforms/test_fill_holes.py +207 -0
  511. tests/transforms/test_fill_holesd.py +209 -0
  512. tests/transforms/test_flatten_sub_keysd.py +64 -0
  513. tests/transforms/test_flip.py +83 -0
  514. tests/transforms/test_flipd.py +90 -0
  515. tests/transforms/test_fourier.py +70 -0
  516. tests/transforms/test_gaussian_sharpen.py +92 -0
  517. tests/transforms/test_gaussian_sharpend.py +92 -0
  518. tests/transforms/test_gaussian_smooth.py +96 -0
  519. tests/transforms/test_gaussian_smoothd.py +96 -0
  520. tests/transforms/test_generate_label_classes_crop_centers.py +71 -0
  521. tests/transforms/test_generate_pos_neg_label_crop_centers.py +76 -0
  522. tests/transforms/test_generate_spatial_bounding_box.py +114 -0
  523. tests/transforms/test_get_extreme_points.py +57 -0
  524. tests/transforms/test_gibbs_noise.py +73 -0
  525. tests/transforms/test_gibbs_noised.py +88 -0
  526. tests/transforms/test_grid_distortion.py +113 -0
  527. tests/transforms/test_grid_distortiond.py +87 -0
  528. tests/transforms/test_grid_split.py +88 -0
  529. tests/transforms/test_grid_splitd.py +96 -0
  530. tests/transforms/test_histogram_normalize.py +59 -0
  531. tests/transforms/test_histogram_normalized.py +59 -0
  532. tests/transforms/test_image_filter.py +259 -0
  533. tests/transforms/test_intensity_stats.py +73 -0
  534. tests/transforms/test_intensity_statsd.py +90 -0
  535. tests/transforms/test_inverse.py +521 -0
  536. tests/transforms/test_inverse_collation.py +147 -0
  537. tests/transforms/test_invert.py +105 -0
  538. tests/transforms/test_invertd.py +142 -0
  539. tests/transforms/test_k_space_spike_noise.py +81 -0
  540. tests/transforms/test_k_space_spike_noised.py +98 -0
  541. tests/transforms/test_keep_largest_connected_component.py +419 -0
  542. tests/transforms/test_keep_largest_connected_componentd.py +348 -0
  543. tests/transforms/test_label_filter.py +78 -0
  544. tests/transforms/test_label_to_contour.py +179 -0
  545. tests/transforms/test_label_to_contourd.py +182 -0
  546. tests/transforms/test_label_to_mask.py +69 -0
  547. tests/transforms/test_label_to_maskd.py +70 -0
  548. tests/transforms/test_load_image.py +502 -0
  549. tests/transforms/test_load_imaged.py +198 -0
  550. tests/transforms/test_load_spacing_orientation.py +149 -0
  551. tests/transforms/test_map_and_generate_sampling_centers.py +86 -0
  552. tests/transforms/test_map_binary_to_indices.py +75 -0
  553. tests/transforms/test_map_classes_to_indices.py +135 -0
  554. tests/transforms/test_map_label_value.py +89 -0
  555. tests/transforms/test_map_label_valued.py +85 -0
  556. tests/transforms/test_map_transform.py +45 -0
  557. tests/transforms/test_mask_intensity.py +74 -0
  558. tests/transforms/test_mask_intensityd.py +68 -0
  559. tests/transforms/test_mean_ensemble.py +77 -0
  560. tests/transforms/test_mean_ensembled.py +91 -0
  561. tests/transforms/test_median_smooth.py +41 -0
  562. tests/transforms/test_median_smoothd.py +65 -0
  563. tests/transforms/test_morphological_ops.py +101 -0
  564. tests/transforms/test_nifti_endianness.py +107 -0
  565. tests/transforms/test_normalize_intensity.py +143 -0
  566. tests/transforms/test_normalize_intensityd.py +81 -0
  567. tests/transforms/test_nvtx_decorator.py +289 -0
  568. tests/transforms/test_nvtx_transform.py +143 -0
  569. tests/transforms/test_orientation.py +247 -0
  570. tests/transforms/test_orientationd.py +112 -0
  571. tests/transforms/test_rand_adjust_contrast.py +45 -0
  572. tests/transforms/test_rand_adjust_contrastd.py +44 -0
  573. tests/transforms/test_rand_affine.py +201 -0
  574. tests/transforms/test_rand_affine_grid.py +212 -0
  575. tests/transforms/test_rand_affined.py +281 -0
  576. tests/transforms/test_rand_axis_flip.py +50 -0
  577. tests/transforms/test_rand_axis_flipd.py +50 -0
  578. tests/transforms/test_rand_bias_field.py +69 -0
  579. tests/transforms/test_rand_bias_fieldd.py +65 -0
  580. tests/transforms/test_rand_coarse_dropout.py +110 -0
  581. tests/transforms/test_rand_coarse_dropoutd.py +107 -0
  582. tests/transforms/test_rand_coarse_shuffle.py +65 -0
  583. tests/transforms/test_rand_coarse_shuffled.py +59 -0
  584. tests/transforms/test_rand_crop_by_label_classes.py +170 -0
  585. tests/transforms/test_rand_crop_by_label_classesd.py +159 -0
  586. tests/transforms/test_rand_crop_by_pos_neg_label.py +152 -0
  587. tests/transforms/test_rand_crop_by_pos_neg_labeld.py +172 -0
  588. tests/transforms/test_rand_cucim_dict_transform.py +162 -0
  589. tests/transforms/test_rand_cucim_transform.py +162 -0
  590. tests/transforms/test_rand_deform_grid.py +138 -0
  591. tests/transforms/test_rand_elastic_2d.py +127 -0
  592. tests/transforms/test_rand_elastic_3d.py +104 -0
  593. tests/transforms/test_rand_elasticd_2d.py +177 -0
  594. tests/transforms/test_rand_elasticd_3d.py +156 -0
  595. tests/transforms/test_rand_flip.py +60 -0
  596. tests/transforms/test_rand_flipd.py +55 -0
  597. tests/transforms/test_rand_gaussian_noise.py +48 -0
  598. tests/transforms/test_rand_gaussian_noised.py +54 -0
  599. tests/transforms/test_rand_gaussian_sharpen.py +140 -0
  600. tests/transforms/test_rand_gaussian_sharpend.py +143 -0
  601. tests/transforms/test_rand_gaussian_smooth.py +98 -0
  602. tests/transforms/test_rand_gaussian_smoothd.py +98 -0
  603. tests/transforms/test_rand_gibbs_noise.py +103 -0
  604. tests/transforms/test_rand_gibbs_noised.py +117 -0
  605. tests/transforms/test_rand_grid_distortion.py +99 -0
  606. tests/transforms/test_rand_grid_distortiond.py +90 -0
  607. tests/transforms/test_rand_histogram_shift.py +92 -0
  608. tests/transforms/test_rand_k_space_spike_noise.py +92 -0
  609. tests/transforms/test_rand_k_space_spike_noised.py +76 -0
  610. tests/transforms/test_rand_rician_noise.py +52 -0
  611. tests/transforms/test_rand_rician_noised.py +52 -0
  612. tests/transforms/test_rand_rotate.py +166 -0
  613. tests/transforms/test_rand_rotate90.py +100 -0
  614. tests/transforms/test_rand_rotate90d.py +112 -0
  615. tests/transforms/test_rand_rotated.py +187 -0
  616. tests/transforms/test_rand_scale_crop.py +78 -0
  617. tests/transforms/test_rand_scale_cropd.py +98 -0
  618. tests/transforms/test_rand_scale_intensity.py +54 -0
  619. tests/transforms/test_rand_scale_intensity_fixed_mean.py +41 -0
  620. tests/transforms/test_rand_scale_intensity_fixed_meand.py +41 -0
  621. tests/transforms/test_rand_scale_intensityd.py +53 -0
  622. tests/transforms/test_rand_shift_intensity.py +52 -0
  623. tests/transforms/test_rand_shift_intensityd.py +67 -0
  624. tests/transforms/test_rand_simulate_low_resolution.py +83 -0
  625. tests/transforms/test_rand_simulate_low_resolutiond.py +73 -0
  626. tests/transforms/test_rand_spatial_crop.py +107 -0
  627. tests/transforms/test_rand_spatial_crop_samples.py +128 -0
  628. tests/transforms/test_rand_spatial_crop_samplesd.py +147 -0
  629. tests/transforms/test_rand_spatial_cropd.py +112 -0
  630. tests/transforms/test_rand_std_shift_intensity.py +43 -0
  631. tests/transforms/test_rand_std_shift_intensityd.py +38 -0
  632. tests/transforms/test_rand_zoom.py +105 -0
  633. tests/transforms/test_rand_zoomd.py +108 -0
  634. tests/transforms/test_randidentity.py +49 -0
  635. tests/transforms/test_random_order.py +144 -0
  636. tests/transforms/test_randtorchvisiond.py +65 -0
  637. tests/transforms/test_regularization.py +139 -0
  638. tests/transforms/test_remove_repeated_channel.py +34 -0
  639. tests/transforms/test_remove_repeated_channeld.py +44 -0
  640. tests/transforms/test_repeat_channel.py +34 -0
  641. tests/transforms/test_repeat_channeld.py +41 -0
  642. tests/transforms/test_resample_backends.py +65 -0
  643. tests/transforms/test_resample_to_match.py +110 -0
  644. tests/transforms/test_resample_to_matchd.py +93 -0
  645. tests/transforms/test_resampler.py +165 -0
  646. tests/transforms/test_resize.py +140 -0
  647. tests/transforms/test_resize_with_pad_or_crop.py +91 -0
  648. tests/transforms/test_resize_with_pad_or_cropd.py +86 -0
  649. tests/transforms/test_resized.py +163 -0
  650. tests/transforms/test_rotate.py +160 -0
  651. tests/transforms/test_rotate90.py +212 -0
  652. tests/transforms/test_rotate90d.py +106 -0
  653. tests/transforms/test_rotated.py +179 -0
  654. tests/transforms/test_save_classificationd.py +109 -0
  655. tests/transforms/test_save_image.py +80 -0
  656. tests/transforms/test_save_imaged.py +130 -0
  657. tests/transforms/test_savitzky_golay_smooth.py +73 -0
  658. tests/transforms/test_savitzky_golay_smoothd.py +73 -0
  659. tests/transforms/test_scale_intensity.py +76 -0
  660. tests/transforms/test_scale_intensity_fixed_mean.py +94 -0
  661. tests/transforms/test_scale_intensity_range.py +41 -0
  662. tests/transforms/test_scale_intensity_ranged.py +40 -0
  663. tests/transforms/test_scale_intensityd.py +57 -0
  664. tests/transforms/test_select_itemsd.py +41 -0
  665. tests/transforms/test_shift_intensity.py +31 -0
  666. tests/transforms/test_shift_intensityd.py +44 -0
  667. tests/transforms/test_signal_continuouswavelet.py +44 -0
  668. tests/transforms/test_signal_fillempty.py +52 -0
  669. tests/transforms/test_signal_fillemptyd.py +60 -0
  670. tests/transforms/test_signal_rand_add_gaussiannoise.py +50 -0
  671. tests/transforms/test_signal_rand_add_sine.py +52 -0
  672. tests/transforms/test_signal_rand_add_sine_partial.py +50 -0
  673. tests/transforms/test_signal_rand_add_squarepulse.py +58 -0
  674. tests/transforms/test_signal_rand_add_squarepulse_partial.py +62 -0
  675. tests/transforms/test_signal_rand_drop.py +50 -0
  676. tests/transforms/test_signal_rand_scale.py +52 -0
  677. tests/transforms/test_signal_rand_shift.py +55 -0
  678. tests/transforms/test_signal_remove_frequency.py +71 -0
  679. tests/transforms/test_smooth_field.py +177 -0
  680. tests/transforms/test_sobel_gradient.py +189 -0
  681. tests/transforms/test_sobel_gradientd.py +212 -0
  682. tests/transforms/test_spacing.py +381 -0
  683. tests/transforms/test_spacingd.py +178 -0
  684. tests/transforms/test_spatial_crop.py +82 -0
  685. tests/transforms/test_spatial_cropd.py +74 -0
  686. tests/transforms/test_spatial_pad.py +57 -0
  687. tests/transforms/test_spatial_padd.py +43 -0
  688. tests/transforms/test_spatial_resample.py +235 -0
  689. tests/transforms/test_squeezedim.py +62 -0
  690. tests/transforms/test_squeezedimd.py +98 -0
  691. tests/transforms/test_std_shift_intensity.py +76 -0
  692. tests/transforms/test_std_shift_intensityd.py +74 -0
  693. tests/transforms/test_threshold_intensity.py +38 -0
  694. tests/transforms/test_threshold_intensityd.py +58 -0
  695. tests/transforms/test_to_contiguous.py +47 -0
  696. tests/transforms/test_to_cupy.py +112 -0
  697. tests/transforms/test_to_cupyd.py +76 -0
  698. tests/transforms/test_to_device.py +42 -0
  699. tests/transforms/test_to_deviced.py +37 -0
  700. tests/transforms/test_to_numpy.py +85 -0
  701. tests/transforms/test_to_numpyd.py +68 -0
  702. tests/transforms/test_to_pil.py +52 -0
  703. tests/transforms/test_to_pild.py +50 -0
  704. tests/transforms/test_to_tensor.py +60 -0
  705. tests/transforms/test_to_tensord.py +71 -0
  706. tests/transforms/test_torchvision.py +66 -0
  707. tests/transforms/test_torchvisiond.py +63 -0
  708. tests/transforms/test_transform.py +62 -0
  709. tests/transforms/test_transpose.py +41 -0
  710. tests/transforms/test_transposed.py +52 -0
  711. tests/transforms/test_ultrasound_confidence_map_transform.py +711 -0
  712. tests/transforms/test_utils_pytorch_numpy_unification.py +90 -0
  713. tests/transforms/test_vote_ensemble.py +84 -0
  714. tests/transforms/test_vote_ensembled.py +107 -0
  715. tests/transforms/test_with_allow_missing_keys.py +76 -0
  716. tests/transforms/test_zoom.py +120 -0
  717. tests/transforms/test_zoomd.py +94 -0
  718. tests/transforms/transform/__init__.py +10 -0
  719. tests/transforms/transform/test_randomizable.py +52 -0
  720. tests/transforms/transform/test_randomizable_transform_type.py +37 -0
  721. tests/transforms/utility/__init__.py +10 -0
  722. tests/transforms/utility/test_apply_transform_to_points.py +81 -0
  723. tests/transforms/utility/test_apply_transform_to_pointsd.py +185 -0
  724. tests/transforms/utility/test_identity.py +29 -0
  725. tests/transforms/utility/test_identityd.py +30 -0
  726. tests/transforms/utility/test_lambda.py +71 -0
  727. tests/transforms/utility/test_lambdad.py +83 -0
  728. tests/transforms/utility/test_rand_lambda.py +87 -0
  729. tests/transforms/utility/test_rand_lambdad.py +77 -0
  730. tests/transforms/utility/test_simulatedelay.py +36 -0
  731. tests/transforms/utility/test_simulatedelayd.py +36 -0
  732. tests/transforms/utility/test_splitdim.py +52 -0
  733. tests/transforms/utility/test_splitdimd.py +96 -0
  734. tests/transforms/utils/__init__.py +10 -0
  735. tests/transforms/utils/test_correct_crop_centers.py +36 -0
  736. tests/transforms/utils/test_get_unique_labels.py +45 -0
  737. tests/transforms/utils/test_print_transform_backends.py +29 -0
  738. tests/transforms/utils/test_soft_clip.py +125 -0
  739. tests/utils/__init__.py +10 -0
  740. tests/utils/enums/__init__.py +10 -0
  741. tests/utils/enums/test_hovernet_loss.py +190 -0
  742. tests/utils/enums/test_ordering.py +289 -0
  743. tests/utils/enums/test_wsireader.py +663 -0
  744. tests/utils/misc/__init__.py +10 -0
  745. tests/utils/misc/test_ensure_tuple.py +53 -0
  746. tests/utils/misc/test_monai_env_vars.py +44 -0
  747. tests/utils/misc/test_monai_utils_misc.py +103 -0
  748. tests/utils/misc/test_str2bool.py +34 -0
  749. tests/utils/misc/test_str2list.py +33 -0
  750. tests/utils/test_alias.py +44 -0
  751. tests/utils/test_component_store.py +73 -0
  752. tests/utils/test_deprecated.py +455 -0
  753. tests/utils/test_enum_bound_interp.py +75 -0
  754. tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
  755. tests/utils/test_get_package_version.py +34 -0
  756. tests/utils/test_handler_logfile.py +84 -0
  757. tests/utils/test_handler_metric_logger.py +62 -0
  758. tests/utils/test_list_to_dict.py +43 -0
  759. tests/utils/test_look_up_option.py +87 -0
  760. tests/utils/test_optional_import.py +80 -0
  761. tests/utils/test_pad_mode.py +39 -0
  762. tests/utils/test_profiling.py +208 -0
  763. tests/utils/test_rankfilter_dist.py +77 -0
  764. tests/utils/test_require_pkg.py +83 -0
  765. tests/utils/test_sample_slices.py +43 -0
  766. tests/utils/test_set_determinism.py +74 -0
  767. tests/utils/test_squeeze_unsqueeze.py +71 -0
  768. tests/utils/test_state_cacher.py +67 -0
  769. tests/utils/test_torchscript_utils.py +113 -0
  770. tests/utils/test_version.py +91 -0
  771. tests/utils/test_version_after.py +65 -0
  772. tests/utils/type_conversion/__init__.py +10 -0
  773. tests/utils/type_conversion/test_convert_data_type.py +152 -0
  774. tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
  775. tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
  776. tests/visualize/__init__.py +10 -0
  777. tests/visualize/test_img2tensorboard.py +46 -0
  778. tests/visualize/test_occlusion_sensitivity.py +128 -0
  779. tests/visualize/test_plot_2d_or_3d_image.py +74 -0
  780. tests/visualize/test_vis_cam.py +98 -0
  781. tests/visualize/test_vis_gradcam.py +211 -0
  782. tests/visualize/utils/__init__.py +10 -0
  783. tests/visualize/utils/test_blend_images.py +63 -0
  784. tests/visualize/utils/test_matshow3d.py +133 -0
  785. monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
  786. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
  787. {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
tests/networks/blocks/test_crf_cuda.py ADDED
@@ -0,0 +1,528 @@
1
+ # Copyright (c) MONAI Consortium
2
+ # Licensed under the Apache License, Version 2.0 (the "License");
3
+ # you may not use this file except in compliance with the License.
4
+ # You may obtain a copy of the License at
5
+ # http://www.apache.org/licenses/LICENSE-2.0
6
+ # Unless required by applicable law or agreed to in writing, software
7
+ # distributed under the License is distributed on an "AS IS" BASIS,
8
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9
+ # See the License for the specific language governing permissions and
10
+ # limitations under the License.
11
+
12
+ from __future__ import annotations
13
+
14
+ import unittest
15
+
16
+ import numpy as np
17
+ import torch
18
+ from parameterized import parameterized
19
+
20
+ from monai.networks.blocks import CRF
21
+ from tests.test_utils import skip_if_no_cpp_extension, skip_if_no_cuda
22
+
23
+ TEST_CASES = [
24
+ [
25
+ # Case Description
26
+ "2 batche(s), 1 dimension(s), 2 classe(s), 1 channel(s)",
27
+ # Parameters
28
+ [
29
+ 5, # iterations
30
+ 1.0, # bilateral_weight
31
+ 0.3, # gaussian_weight
32
+ 5.0, # bilateral_spatial_sigma
33
+ 0.5, # bilateral_color_sigma
34
+ 5.0, # gaussian_spatial_sigma
35
+ 1.0, # update_factor
36
+ None, # compatibility_matrix
37
+ ],
38
+ # Input
39
+ [
40
+ # Batch 0
41
+ [
42
+ # Class 0
43
+ [0.8, 0.9, 0.6, 0.2, 0.3],
44
+ # Class 1
45
+ [0.1, 0.3, 0.5, 0.8, 0.7],
46
+ ],
47
+ # Batch 1
48
+ [
49
+ # Class 0
50
+ [0.8, 0.9, 0.6, 0.2, 0.3],
51
+ # Class 1
52
+ [0.1, 0.3, 0.5, 0.8, 0.7],
53
+ ],
54
+ ],
55
+ # Features
56
+ [
57
+ # Batch 0
58
+ [
59
+ # Channel 0
60
+ [1, 1, 1, 0.5, 0]
61
+ ],
62
+ # Batch 1
63
+ [
64
+ # Channel 0
65
+ [1, 1, 0.5, 0, 0]
66
+ ],
67
+ ],
68
+ # Expected
69
+ [
70
+ # Batch 0
71
+ [
72
+ # Class 0
73
+ [0.724431, 0.702247, 0.586338, 0.364053, 0.362328],
74
+ # Class 1
75
+ [0.275569, 0.297753, 0.413662, 0.635947, 0.637672],
76
+ ],
77
+ # Batch 1
78
+ [
79
+ # Class 0
80
+ [0.735150, 0.713455, 0.522234, 0.301106, 0.345620],
81
+ # Class 1
82
+ [0.264850, 0.286545, 0.477766, 0.698894, 0.654381],
83
+ ],
84
+ ],
85
+ ],
86
+ [
87
+ # Case Description
88
+ "2 batche(s), 1 dimension(s), 2 classe(s), 1 channel(s), with_matrix",
89
+ # Parameters
90
+ [
91
+ 5, # iterations
92
+ 1.0, # bilateral_weight
93
+ 0.3, # gaussian_weight
94
+ 5.0, # bilateral_spatial_sigma
95
+ 0.5, # bilateral_color_sigma
96
+ 5.0, # gaussian_spatial_sigma
97
+ 1.0, # update_factor
98
+ 2 * torch.eye(2), # compatibility_matrix
99
+ ],
100
+ # Input
101
+ [
102
+ # Batch 0
103
+ [
104
+ # Class 0
105
+ [0.8, 0.9, 0.6, 0.2, 0.3],
106
+ # Class 1
107
+ [0.1, 0.3, 0.5, 0.8, 0.7],
108
+ ],
109
+ # Batch 1
110
+ [
111
+ # Class 0
112
+ [0.8, 0.9, 0.6, 0.2, 0.3],
113
+ # Class 1
114
+ [0.1, 0.3, 0.5, 0.8, 0.7],
115
+ ],
116
+ ],
117
+ # Features
118
+ [
119
+ # Batch 0
120
+ [
121
+ # Channel 0
122
+ [1, 1, 1, 0.5, 0]
123
+ ],
124
+ # Batch 1
125
+ [
126
+ # Channel 0
127
+ [1, 1, 0.5, 0, 0]
128
+ ],
129
+ ],
130
+ # Expected
131
+ [
132
+ # Batch 0
133
+ [
134
+ # Class 0
135
+ [0.854686, 0.839089, 0.755770, 0.463087, 0.357129],
136
+ # Class 1
137
+ [0.145314, 0.160911, 0.244230, 0.536913, 0.642871],
138
+ ],
139
+ # Batch 1
140
+ [
141
+ # Class 0
142
+ [0.825893, 0.807061, 0.492641, 0.196325, 0.231688],
143
+ # Class 1
144
+ [0.174107, 0.192939, 0.507359, 0.803675, 0.768312],
145
+ ],
146
+ ],
147
+ ],
148
+ [
149
+ # Case Description
150
+ "1 batche(s), 2 dimension(s), 3 classe(s), 2 channel(s)",
151
+ # Parameters
152
+ [
153
+ 5, # iterations
154
+ 1.0, # bilateral_weight
155
+ 0.3, # gaussian_weight
156
+ 5.0, # bilateral_spatial_sigma
157
+ 0.5, # bilateral_color_sigma
158
+ 5.0, # gaussian_spatial_sigma
159
+ 1.0, # update_factor
160
+ None, # compatibility_matrix
161
+ ],
162
+ # Input
163
+ [
164
+ # Batch 0
165
+ [
166
+ # Class 0
167
+ [
168
+ [0.0, 0.0, 0.0, 0.0, 0.0],
169
+ [0.0, 0.0, 0.0, 0.0, 0.0],
170
+ [0.0, 0.0, 0.0, 0.0, 0.0],
171
+ [0.0, 0.0, 0.0, 1.0, 1.0],
172
+ [0.0, 0.0, 0.0, 1.0, 1.0],
173
+ ],
174
+ # Class 1
175
+ [
176
+ [1.0, 1.0, 0.0, 0.0, 0.0],
177
+ [1.0, 1.0, 0.0, 0.0, 0.0],
178
+ [0.0, 0.0, 0.0, 0.0, 0.0],
179
+ [0.0, 0.0, 0.0, 0.0, 0.0],
180
+ [0.0, 0.0, 0.0, 0.0, 0.0],
181
+ ],
182
+ # Class 2
183
+ [
184
+ [0.0, 0.0, 0.0, 0.5, 1.0],
185
+ [0.0, 0.0, 0.5, 1.0, 0.5],
186
+ [0.0, 0.5, 1.0, 0.5, 0.0],
187
+ [0.5, 1.0, 0.5, 0.0, 0.0],
188
+ [1.0, 0.5, 0.0, 0.0, 0.0],
189
+ ],
190
+ ]
191
+ ],
192
+ # Features
193
+ [
194
+ # Batch 0
195
+ [
196
+ # Channel 0
197
+ [
198
+ [1.0, 1.0, 0.0, 0.0, 0.0],
199
+ [1.0, 1.0, 0.0, 0.0, 0.0],
200
+ [0.0, 0.0, 0.0, 0.0, 0.0],
201
+ [0.0, 0.0, 0.0, 0.0, 0.0],
202
+ [0.0, 0.0, 0.0, 0.0, 0.0],
203
+ ],
204
+ # Channel 1
205
+ [
206
+ [0.0, 0.0, 0.0, 0.0, 0.0],
207
+ [0.0, 0.0, 0.0, 0.0, 0.0],
208
+ [0.0, 0.0, 0.0, 0.0, 0.0],
209
+ [0.0, 0.0, 0.0, 1.0, 1.0],
210
+ [0.0, 0.0, 0.0, 1.0, 1.0],
211
+ ],
212
+ ]
213
+ ],
214
+ # Expected
215
+ [
216
+ # Batch 0
217
+ [
218
+ # Class 0
219
+ [
220
+ [0.154633, 0.164076, 0.300110, 0.239729, 0.179437],
221
+ [0.156664, 0.161426, 0.254582, 0.191402, 0.253060],
222
+ [0.316391, 0.259811, 0.201576, 0.271977, 0.333670],
223
+ [0.263658, 0.204998, 0.276233, 0.686272, 0.687161],
224
+ [0.208480, 0.281425, 0.355033, 0.690412, 0.692331],
225
+ ],
226
+ # Class 1
227
+ [
228
+ [0.681083, 0.652977, 0.312156, 0.245985, 0.181768],
229
+ [0.675692, 0.662155, 0.247827, 0.183893, 0.240174],
230
+ [0.309154, 0.249075, 0.186364, 0.240742, 0.293918],
231
+ [0.243739, 0.185445, 0.242820, 0.151819, 0.151363],
232
+ [0.180842, 0.238059, 0.292488, 0.150209, 0.149395],
233
+ ],
234
+ # Class 2
235
+ [
236
+ [0.164284, 0.182947, 0.387733, 0.514285, 0.638795],
237
+ [0.167644, 0.176419, 0.497592, 0.624705, 0.506766],
238
+ [0.374455, 0.491115, 0.612060, 0.487281, 0.372412],
239
+ [0.492602, 0.609557, 0.480947, 0.161909, 0.161476],
240
+ [0.610678, 0.480516, 0.352479, 0.159380, 0.158274],
241
+ ],
242
+ ]
243
+ ],
244
+ ],
245
+ [
246
+ # Case Description
247
+ "1 batche(s), 3 dimension(s), 2 classe(s), 1 channel(s)",
248
+ # Parameters
249
+ [
250
+ 2, # iterations
251
+ 1.0, # bilateral_weight
252
+ 0.3, # gaussian_weight
253
+ 5.0, # bilateral_spatial_sigma
254
+ 0.1, # bilateral_color_sigma
255
+ 5.0, # gaussian_spatial_sigma
256
+ 1.0, # update_factor
257
+ None, # compatibility_matrix
258
+ ],
259
+ # Input
260
+ [
261
+ # Batch 0
262
+ [
263
+ # Class 0
264
+ [
265
+ # Slice 0
266
+ [
267
+ [1.0, 1.0, 0.0, 0.0, 0.0],
268
+ [1.0, 1.0, 0.0, 0.0, 0.0],
269
+ [0.0, 0.0, 0.0, 0.0, 0.0],
270
+ [0.0, 0.0, 0.0, 0.0, 0.0],
271
+ [0.0, 0.0, 0.0, 0.0, 0.0],
272
+ ],
273
+ # Slice 1
274
+ [
275
+ [1.0, 1.0, 0.0, 0.0, 0.0],
276
+ [1.0, 1.0, 0.0, 0.0, 0.0],
277
+ [0.0, 0.0, 0.0, 0.0, 0.0],
278
+ [0.0, 0.0, 0.0, 0.0, 0.0],
279
+ [0.0, 0.0, 0.0, 0.0, 0.0],
280
+ ],
281
+ # Slice 2
282
+ [
283
+ [0.0, 0.0, 0.0, 0.0, 0.0],
284
+ [0.0, 0.0, 0.0, 0.0, 0.0],
285
+ [0.0, 0.0, 0.0, 0.0, 0.0],
286
+ [0.0, 0.0, 0.0, 0.0, 0.0],
287
+ [0.0, 0.0, 0.0, 0.0, 0.0],
288
+ ],
289
+ # Slice 3
290
+ [
291
+ [0.0, 0.0, 0.0, 0.0, 0.0],
292
+ [0.0, 0.0, 0.0, 0.0, 0.0],
293
+ [0.0, 0.0, 0.0, 0.0, 0.0],
294
+ [0.0, 0.0, 0.0, 0.0, 0.0],
295
+ [0.0, 0.0, 0.0, 0.0, 0.0],
296
+ ],
297
+ # Slice 4
298
+ [
299
+ [0.0, 0.0, 0.0, 0.0, 0.0],
300
+ [0.0, 0.0, 0.0, 0.0, 0.0],
301
+ [0.0, 0.0, 0.0, 0.0, 0.0],
302
+ [0.0, 0.0, 0.0, 0.0, 0.0],
303
+ [0.0, 0.0, 0.0, 0.0, 0.0],
304
+ ],
305
+ ],
306
+ # Class 1
307
+ [
308
+ # Slice 0
309
+ [
310
+ [0.0, 0.0, 0.0, 0.0, 0.0],
311
+ [0.0, 0.0, 0.0, 0.0, 0.0],
312
+ [0.0, 0.0, 0.0, 0.0, 0.0],
313
+ [0.0, 0.0, 0.0, 0.0, 0.0],
314
+ [0.0, 0.0, 0.0, 0.0, 0.0],
315
+ ],
316
+ # Slice 1
317
+ [
318
+ [0.0, 0.0, 0.0, 0.0, 0.0],
319
+ [0.0, 0.0, 0.0, 0.0, 0.0],
320
+ [0.0, 0.0, 0.0, 0.0, 0.0],
321
+ [0.0, 0.0, 0.0, 0.0, 0.0],
322
+ [0.0, 0.0, 0.0, 0.0, 0.0],
323
+ ],
324
+ # Slice 2
325
+ [
326
+ [0.0, 0.0, 0.0, 0.0, 0.0],
327
+ [0.0, 0.0, 0.0, 0.0, 0.0],
328
+ [0.0, 0.0, 0.0, 0.0, 0.0],
329
+ [0.0, 0.0, 0.0, 0.0, 0.0],
330
+ [0.0, 0.0, 0.0, 0.0, 0.0],
331
+ ],
332
+ # Slice 3
333
+ [
334
+ [0.0, 0.0, 0.0, 0.0, 0.0],
335
+ [0.0, 0.0, 0.0, 0.0, 0.0],
336
+ [0.0, 0.0, 0.0, 0.0, 0.0],
337
+ [0.0, 0.0, 0.0, 1.0, 1.0],
338
+ [0.0, 0.0, 0.0, 1.0, 1.0],
339
+ ],
340
+ # Slice 4
341
+ [
342
+ [0.0, 0.0, 0.0, 0.0, 0.0],
343
+ [0.0, 0.0, 0.0, 0.0, 0.0],
344
+ [0.0, 0.0, 0.0, 0.0, 0.0],
345
+ [0.0, 0.0, 0.0, 1.0, 1.0],
346
+ [0.0, 0.0, 0.0, 1.0, 1.0],
347
+ ],
348
+ ],
349
+ ]
350
+ ],
351
+ # Features
352
+ [
353
+ # Batch 0
354
+ [
355
+ # Channel 0
356
+ [
357
+ # Slice 0
358
+ [
359
+ [0.5, 0.5, 0.5, 0.0, 0.0],
360
+ [0.5, 0.5, 0.5, 0.0, 0.0],
361
+ [0.5, 0.5, 0.5, 0.0, 0.0],
362
+ [0.0, 0.0, 0.0, 0.0, 0.0],
363
+ [0.0, 0.0, 0.0, 0.0, 0.0],
364
+ ],
365
+ # Slice 1
366
+ [
367
+ [0.5, 0.5, 0.5, 0.0, 0.0],
368
+ [0.5, 0.5, 0.5, 0.0, 0.0],
369
+ [0.5, 0.5, 0.5, 0.0, 0.0],
370
+ [0.0, 0.0, 0.0, 0.0, 0.0],
371
+ [0.0, 0.0, 0.0, 0.0, 0.0],
372
+ ],
373
+ # Slice 2
374
+ [
375
+ [0.5, 0.5, 0.5, 0.0, 0.0],
376
+ [0.5, 0.5, 0.5, 0.0, 0.0],
377
+ [0.5, 0.5, 0.8, 1.0, 1.0],
378
+ [0.0, 0.0, 1.0, 1.0, 1.0],
379
+ [0.0, 0.0, 1.0, 1.0, 1.0],
380
+ ],
381
+ # Slice 3
382
+ [
383
+ [0.0, 0.0, 0.0, 0.0, 0.0],
384
+ [0.0, 0.0, 0.0, 0.0, 0.0],
385
+ [0.0, 0.0, 1.0, 1.0, 1.0],
386
+ [0.0, 0.0, 1.0, 1.0, 1.0],
387
+ [0.0, 0.0, 1.0, 1.0, 1.0],
388
+ ],
389
+ # Slice 4
390
+ [
391
+ [0.0, 0.0, 0.0, 0.0, 0.0],
392
+ [0.0, 0.0, 0.0, 0.0, 0.0],
393
+ [0.0, 0.0, 1.0, 1.0, 1.0],
394
+ [0.0, 0.0, 1.0, 1.0, 1.0],
395
+ [0.0, 0.0, 1.0, 1.0, 1.0],
396
+ ],
397
+ ]
398
+ ]
399
+ ],
400
+ # Expected
401
+ [
402
+ # Batch 0
403
+ [
404
+ # Class 0
405
+ [
406
+ # Slice 0
407
+ [
408
+ [0.778237, 0.777561, 0.561416, 0.501611, 0.501294],
409
+ [0.777517, 0.776882, 0.560301, 0.501103, 0.500791],
410
+ [0.561231, 0.560339, 0.559060, 0.500619, 0.500311],
411
+ [0.501322, 0.500872, 0.500468, 0.500156, 0.499851],
412
+ [0.500883, 0.500449, 0.500059, 0.499713, 0.499420],
413
+ ],
414
+ # Slice 1
415
+ [
416
+ [0.777409, 0.776861, 0.560182, 0.501111, 0.500808],
417
+ [0.776784, 0.776102, 0.558887, 0.500618, 0.500329],
418
+ [0.559943, 0.558969, 0.557350, 0.500183, 0.499897],
419
+ [0.500789, 0.500403, 0.500052, 0.499765, 0.499487],
420
+ [0.500378, 0.500005, 0.499668, 0.499363, 0.499072],
421
+ ],
422
+ # Slice 2
423
+ [
424
+ [0.560846, 0.560185, 0.558597, 0.500660, 0.500369],
425
+ [0.560078, 0.559146, 0.556974, 0.500209, 0.499950],
426
+ [0.558225, 0.557130, 0.486025, 0.448784, 0.445606],
427
+ [0.500340, 0.500005, 0.448945, 0.448551, 0.444201],
428
+ [0.499972, 0.499644, 0.448537, 0.447195, 0.443425],
429
+ ],
430
+ # Slice 3
431
+ [
432
+ [0.500887, 0.500713, 0.500529, 0.500251, 0.499999],
433
+ [0.500596, 0.500312, 0.500109, 0.499848, 0.499605],
434
+ [0.500301, 0.500002, 0.447391, 0.445814, 0.442289],
435
+ [0.499940, 0.499662, 0.447338, 0.227284, 0.225224],
436
+ [0.499650, 0.499367, 0.445866, 0.227800, 0.225564],
437
+ ],
438
+ # Slice 4
439
+ [
440
+ [0.500399, 0.500241, 0.500090, 0.499883, 0.499637],
441
+ [0.500134, 0.499888, 0.499756, 0.499526, 0.499261],
442
+ [0.499888, 0.499631, 0.446166, 0.442215, 0.440038],
443
+ [0.499603, 0.499369, 0.445307, 0.225463, 0.223935],
444
+ [0.499337, 0.499113, 0.443668, 0.226403, 0.224790],
445
+ ],
446
+ ],
447
+ # Class 1
448
+ [
449
+ # Slice 0
450
+ [
451
+ [0.221763, 0.222439, 0.438584, 0.498389, 0.498706],
452
+ [0.222483, 0.223118, 0.439699, 0.498897, 0.499209],
453
+ [0.438769, 0.439661, 0.440940, 0.499381, 0.499689],
454
+ [0.498678, 0.499128, 0.499532, 0.499844, 0.500149],
455
+ [0.499117, 0.499551, 0.499941, 0.500287, 0.500580],
456
+ ],
457
+ # Slice 1
458
+ [
459
+ [0.222591, 0.223139, 0.439818, 0.498889, 0.499192],
460
+ [0.223216, 0.223898, 0.441113, 0.499382, 0.499671],
461
+ [0.440057, 0.441031, 0.442650, 0.499817, 0.500103],
462
+ [0.499211, 0.499597, 0.499948, 0.500235, 0.500513],
463
+ [0.499622, 0.499995, 0.500332, 0.500637, 0.500928],
464
+ ],
465
+ # Slice 2
466
+ [
467
+ [0.439154, 0.439815, 0.441403, 0.499340, 0.499631],
468
+ [0.439922, 0.440854, 0.443026, 0.499791, 0.500050],
469
+ [0.441775, 0.442870, 0.513975, 0.551216, 0.554394],
470
+ [0.499660, 0.499995, 0.551055, 0.551449, 0.555799],
471
+ [0.500028, 0.500356, 0.551463, 0.552805, 0.556575],
472
+ ],
473
+ # Slice 3
474
+ [
475
+ [0.499113, 0.499287, 0.499471, 0.499749, 0.500001],
476
+ [0.499404, 0.499688, 0.499891, 0.500152, 0.500395],
477
+ [0.499699, 0.499998, 0.552609, 0.554186, 0.557711],
478
+ [0.500060, 0.500338, 0.552662, 0.772716, 0.774776],
479
+ [0.500350, 0.500633, 0.554134, 0.772200, 0.774436],
480
+ ],
481
+ # Slice 4
482
+ [
483
+ [0.499601, 0.499759, 0.499910, 0.500117, 0.500363],
484
+ [0.499866, 0.500112, 0.500244, 0.500474, 0.500739],
485
+ [0.500112, 0.500369, 0.553834, 0.557785, 0.559962],
486
+ [0.500397, 0.500631, 0.554693, 0.774537, 0.776065],
487
+ [0.500663, 0.500887, 0.556332, 0.773597, 0.775210],
488
+ ],
489
+ ],
490
+ ]
491
+ ],
492
+ ],
493
+ ]
494
+
495
+
496
+ @skip_if_no_cpp_extension
497
+ @skip_if_no_cuda
498
+ class CRFTestCaseCuda(unittest.TestCase):
499
+ @parameterized.expand(TEST_CASES)
500
+ def test(self, test_case_description, params, input, features, expected):
501
+ # Create input tensors
502
+ input_tensor = torch.from_numpy(np.array(input)).to(dtype=torch.float, device=torch.device("cuda"))
503
+ feature_tensor = torch.from_numpy(np.array(features)).to(dtype=torch.float, device=torch.device("cuda"))
504
+
505
+ params[-1] = None if params[-1] is None else params[-1].cuda()
506
+
507
+ # apply filter
508
+ crf = CRF(*params)
509
+ output = crf(input_tensor, feature_tensor).cpu().numpy()
510
+
511
+ # Ensure result are as expected
512
+ # np.testing.assert_allclose(output, expected, atol=1e-4)
513
+
514
+ # Temporarily allowing some (10%) mismatched elements due to non determinism.
515
+ absolute_diff_tolerance = 5e-2
516
+ mismatch_ratio_tolerance = 0.1
517
+
518
+ output = np.array(output).flatten()
519
+ expected = np.array(expected).flatten()
520
+
521
+ abs_diff = abs(output - expected)
522
+ mismatch_count = sum(np.where(abs_diff > absolute_diff_tolerance, 1, 0))
523
+
524
+ self.assertLessEqual(mismatch_count / len(output), mismatch_ratio_tolerance)
525
+
526
+
527
+ if __name__ == "__main__":
528
+ unittest.main()