monai-weekly 1.5.dev2506__py3-none-any.whl → 1.5.dev2508__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- monai/__init__.py +1 -1
- monai/_version.py +3 -3
- monai/apps/auto3dseg/transforms.py +1 -4
- monai/data/utils.py +6 -13
- monai/handlers/__init__.py +1 -0
- monai/handlers/average_precision.py +53 -0
- monai/inferers/inferer.py +10 -7
- monai/inferers/utils.py +1 -2
- monai/losses/dice.py +2 -14
- monai/losses/ds_loss.py +1 -3
- monai/metrics/__init__.py +1 -0
- monai/metrics/average_precision.py +187 -0
- monai/networks/layers/simplelayers.py +2 -14
- monai/networks/utils.py +4 -16
- monai/transforms/compose.py +28 -11
- monai/transforms/croppad/array.py +1 -6
- monai/transforms/io/array.py +0 -1
- monai/transforms/transform.py +15 -6
- monai/transforms/utility/array.py +2 -12
- monai/transforms/utils.py +1 -2
- monai/transforms/utils_pytorch_numpy_unification.py +2 -4
- monai/utils/enums.py +3 -2
- monai/utils/module.py +6 -6
- monai/utils/tf32.py +0 -10
- monai/visualize/class_activation_maps.py +5 -8
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/METADATA +21 -17
- monai_weekly-1.5.dev2508.dist-info/RECORD +1185 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/top_level.txt +1 -0
- tests/apps/__init__.py +10 -0
- tests/apps/deepedit/__init__.py +10 -0
- tests/apps/deepedit/test_deepedit_transforms.py +314 -0
- tests/apps/deepgrow/__init__.py +10 -0
- tests/apps/deepgrow/test_deepgrow_dataset.py +109 -0
- tests/apps/deepgrow/transforms/__init__.py +10 -0
- tests/apps/deepgrow/transforms/test_deepgrow_interaction.py +97 -0
- tests/apps/deepgrow/transforms/test_deepgrow_transforms.py +556 -0
- tests/apps/detection/__init__.py +10 -0
- tests/apps/detection/metrics/__init__.py +10 -0
- tests/apps/detection/metrics/test_detection_coco_metrics.py +69 -0
- tests/apps/detection/networks/__init__.py +10 -0
- tests/apps/detection/networks/test_retinanet.py +210 -0
- tests/apps/detection/networks/test_retinanet_detector.py +203 -0
- tests/apps/detection/test_box_transform.py +370 -0
- tests/apps/detection/utils/__init__.py +10 -0
- tests/apps/detection/utils/test_anchor_box.py +88 -0
- tests/apps/detection/utils/test_atss_box_matcher.py +46 -0
- tests/apps/detection/utils/test_box_coder.py +43 -0
- tests/apps/detection/utils/test_detector_boxselector.py +67 -0
- tests/apps/detection/utils/test_detector_utils.py +96 -0
- tests/apps/detection/utils/test_hardnegsampler.py +54 -0
- tests/apps/nuclick/__init__.py +10 -0
- tests/apps/nuclick/test_nuclick_transforms.py +259 -0
- tests/apps/pathology/__init__.py +10 -0
- tests/apps/pathology/handlers/__init__.py +10 -0
- tests/apps/pathology/handlers/test_from_engine_hovernet.py +38 -0
- tests/apps/pathology/test_lesion_froc.py +333 -0
- tests/apps/pathology/test_pathology_prob_nms.py +55 -0
- tests/apps/pathology/test_prepare_batch_hovernet.py +70 -0
- tests/apps/pathology/test_sliding_window_hovernet_inference.py +303 -0
- tests/apps/pathology/transforms/__init__.py +10 -0
- tests/apps/pathology/transforms/post/__init__.py +10 -0
- tests/apps/pathology/transforms/post/test_generate_distance_map.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_distance_mapd.py +70 -0
- tests/apps/pathology/transforms/post/test_generate_instance_border.py +49 -0
- tests/apps/pathology/transforms/post/test_generate_instance_borderd.py +59 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroid.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_instance_centroidd.py +56 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contour.py +58 -0
- tests/apps/pathology/transforms/post/test_generate_instance_contourd.py +61 -0
- tests/apps/pathology/transforms/post/test_generate_instance_type.py +51 -0
- tests/apps/pathology/transforms/post/test_generate_instance_typed.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contour.py +55 -0
- tests/apps/pathology/transforms/post/test_generate_succinct_contourd.py +57 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markers.py +53 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_markersd.py +83 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_mask.py +77 -0
- tests/apps/pathology/transforms/post/test_generate_watershed_maskd.py +77 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processing.py +61 -0
- tests/apps/pathology/transforms/post/test_hovernet_instance_map_post_processingd.py +66 -0
- tests/apps/pathology/transforms/post/test_hovernet_nuclear_type_post_processing.py +66 -0
- tests/apps/pathology/transforms/post/test_watershed.py +60 -0
- tests/apps/pathology/transforms/post/test_watershedd.py +70 -0
- tests/apps/pathology/transforms/test_pathology_he_stain.py +230 -0
- tests/apps/pathology/transforms/test_pathology_he_stain_dict.py +225 -0
- tests/apps/reconstruction/__init__.py +10 -0
- tests/apps/reconstruction/nets/__init__.py +10 -0
- tests/apps/reconstruction/nets/test_recon_net_utils.py +82 -0
- tests/apps/reconstruction/test_complex_utils.py +77 -0
- tests/apps/reconstruction/test_fastmri_reader.py +82 -0
- tests/apps/reconstruction/test_mri_utils.py +37 -0
- tests/apps/reconstruction/transforms/__init__.py +10 -0
- tests/apps/reconstruction/transforms/test_kspace_mask.py +50 -0
- tests/apps/reconstruction/transforms/test_reference_based_normalize_intensity.py +77 -0
- tests/apps/reconstruction/transforms/test_reference_based_spatial_cropd.py +57 -0
- tests/apps/test_auto3dseg_bundlegen.py +156 -0
- tests/apps/test_check_hash.py +53 -0
- tests/apps/test_cross_validation.py +74 -0
- tests/apps/test_decathlondataset.py +93 -0
- tests/apps/test_download_and_extract.py +70 -0
- tests/apps/test_download_url_yandex.py +45 -0
- tests/apps/test_mednistdataset.py +72 -0
- tests/apps/test_mmar_download.py +154 -0
- tests/apps/test_tciadataset.py +123 -0
- tests/apps/vista3d/__init__.py +10 -0
- tests/apps/vista3d/test_point_based_window_inferer.py +77 -0
- tests/apps/vista3d/test_vista3d_sampler.py +100 -0
- tests/apps/vista3d/test_vista3d_transforms.py +94 -0
- tests/bundle/__init__.py +10 -0
- tests/bundle/test_bundle_ckpt_export.py +107 -0
- tests/bundle/test_bundle_download.py +435 -0
- tests/bundle/test_bundle_get_data.py +94 -0
- tests/bundle/test_bundle_push_to_hf_hub.py +41 -0
- tests/bundle/test_bundle_trt_export.py +147 -0
- tests/bundle/test_bundle_utils.py +149 -0
- tests/bundle/test_bundle_verify_metadata.py +66 -0
- tests/bundle/test_bundle_verify_net.py +76 -0
- tests/bundle/test_bundle_workflow.py +272 -0
- tests/bundle/test_component_locator.py +38 -0
- tests/bundle/test_config_item.py +138 -0
- tests/bundle/test_config_parser.py +392 -0
- tests/bundle/test_reference_resolver.py +114 -0
- tests/config/__init__.py +10 -0
- tests/config/test_cv2_dist.py +53 -0
- tests/engines/__init__.py +10 -0
- tests/engines/test_ensemble_evaluator.py +94 -0
- tests/engines/test_prepare_batch_default.py +76 -0
- tests/engines/test_prepare_batch_default_dist.py +76 -0
- tests/engines/test_prepare_batch_diffusion.py +104 -0
- tests/engines/test_prepare_batch_extra_input.py +80 -0
- tests/fl/__init__.py +10 -0
- tests/fl/monai_algo/__init__.py +10 -0
- tests/fl/monai_algo/test_fl_monai_algo.py +251 -0
- tests/fl/monai_algo/test_fl_monai_algo_dist.py +117 -0
- tests/fl/test_fl_monai_algo_stats.py +81 -0
- tests/fl/utils/__init__.py +10 -0
- tests/fl/utils/test_fl_exchange_object.py +63 -0
- tests/handlers/__init__.py +10 -0
- tests/handlers/test_handler_average_precision.py +79 -0
- tests/handlers/test_handler_checkpoint_loader.py +182 -0
- tests/handlers/test_handler_checkpoint_saver.py +233 -0
- tests/handlers/test_handler_classification_saver.py +64 -0
- tests/handlers/test_handler_classification_saver_dist.py +77 -0
- tests/handlers/test_handler_clearml_image.py +65 -0
- tests/handlers/test_handler_clearml_stats.py +65 -0
- tests/handlers/test_handler_confusion_matrix.py +104 -0
- tests/handlers/test_handler_confusion_matrix_dist.py +70 -0
- tests/handlers/test_handler_decollate_batch.py +66 -0
- tests/handlers/test_handler_early_stop.py +68 -0
- tests/handlers/test_handler_garbage_collector.py +73 -0
- tests/handlers/test_handler_hausdorff_distance.py +111 -0
- tests/handlers/test_handler_ignite_metric.py +191 -0
- tests/handlers/test_handler_lr_scheduler.py +94 -0
- tests/handlers/test_handler_mean_dice.py +98 -0
- tests/handlers/test_handler_mean_iou.py +76 -0
- tests/handlers/test_handler_metrics_reloaded.py +149 -0
- tests/handlers/test_handler_metrics_saver.py +89 -0
- tests/handlers/test_handler_metrics_saver_dist.py +120 -0
- tests/handlers/test_handler_mlflow.py +296 -0
- tests/handlers/test_handler_nvtx.py +93 -0
- tests/handlers/test_handler_panoptic_quality.py +89 -0
- tests/handlers/test_handler_parameter_scheduler.py +136 -0
- tests/handlers/test_handler_post_processing.py +74 -0
- tests/handlers/test_handler_prob_map_producer.py +111 -0
- tests/handlers/test_handler_regression_metrics.py +160 -0
- tests/handlers/test_handler_regression_metrics_dist.py +245 -0
- tests/handlers/test_handler_rocauc.py +48 -0
- tests/handlers/test_handler_rocauc_dist.py +54 -0
- tests/handlers/test_handler_stats.py +281 -0
- tests/handlers/test_handler_surface_distance.py +113 -0
- tests/handlers/test_handler_tb_image.py +61 -0
- tests/handlers/test_handler_tb_stats.py +166 -0
- tests/handlers/test_handler_validation.py +59 -0
- tests/handlers/test_trt_compile.py +145 -0
- tests/handlers/test_write_metrics_reports.py +68 -0
- tests/inferers/__init__.py +10 -0
- tests/inferers/test_avg_merger.py +179 -0
- tests/inferers/test_controlnet_inferers.py +1388 -0
- tests/inferers/test_diffusion_inferer.py +236 -0
- tests/inferers/test_latent_diffusion_inferer.py +884 -0
- tests/inferers/test_patch_inferer.py +309 -0
- tests/inferers/test_saliency_inferer.py +55 -0
- tests/inferers/test_slice_inferer.py +57 -0
- tests/inferers/test_sliding_window_inference.py +377 -0
- tests/inferers/test_sliding_window_splitter.py +284 -0
- tests/inferers/test_wsi_sliding_window_splitter.py +249 -0
- tests/inferers/test_zarr_avg_merger.py +326 -0
- tests/integration/__init__.py +10 -0
- tests/integration/test_auto3dseg_ensemble.py +211 -0
- tests/integration/test_auto3dseg_hpo.py +189 -0
- tests/integration/test_deepedit_interaction.py +122 -0
- tests/integration/test_downsample_block.py +50 -0
- tests/integration/test_hovernet_nuclear_type_post_processingd.py +71 -0
- tests/integration/test_integration_autorunner.py +201 -0
- tests/integration/test_integration_bundle_run.py +240 -0
- tests/integration/test_integration_classification_2d.py +282 -0
- tests/integration/test_integration_determinism.py +95 -0
- tests/integration/test_integration_fast_train.py +231 -0
- tests/integration/test_integration_gpu_customization.py +159 -0
- tests/integration/test_integration_lazy_samples.py +219 -0
- tests/integration/test_integration_nnunetv2_runner.py +96 -0
- tests/integration/test_integration_segmentation_3d.py +304 -0
- tests/integration/test_integration_sliding_window.py +100 -0
- tests/integration/test_integration_stn.py +133 -0
- tests/integration/test_integration_unet_2d.py +67 -0
- tests/integration/test_integration_workers.py +61 -0
- tests/integration/test_integration_workflows.py +365 -0
- tests/integration/test_integration_workflows_adversarial.py +173 -0
- tests/integration/test_integration_workflows_gan.py +158 -0
- tests/integration/test_loader_semaphore.py +48 -0
- tests/integration/test_mapping_filed.py +122 -0
- tests/integration/test_meta_affine.py +183 -0
- tests/integration/test_metatensor_integration.py +114 -0
- tests/integration/test_module_list.py +76 -0
- tests/integration/test_one_of.py +283 -0
- tests/integration/test_pad_collation.py +124 -0
- tests/integration/test_reg_loss_integration.py +107 -0
- tests/integration/test_retinanet_predict_utils.py +154 -0
- tests/integration/test_seg_loss_integration.py +159 -0
- tests/integration/test_spatial_combine_transforms.py +185 -0
- tests/integration/test_testtimeaugmentation.py +186 -0
- tests/integration/test_vis_gradbased.py +69 -0
- tests/integration/test_vista3d_utils.py +159 -0
- tests/losses/__init__.py +10 -0
- tests/losses/deform/__init__.py +10 -0
- tests/losses/deform/test_bending_energy.py +88 -0
- tests/losses/deform/test_diffusion_loss.py +117 -0
- tests/losses/image_dissimilarity/__init__.py +10 -0
- tests/losses/image_dissimilarity/test_global_mutual_information_loss.py +150 -0
- tests/losses/image_dissimilarity/test_local_normalized_cross_correlation_loss.py +162 -0
- tests/losses/test_adversarial_loss.py +94 -0
- tests/losses/test_barlow_twins_loss.py +109 -0
- tests/losses/test_cldice_loss.py +51 -0
- tests/losses/test_contrastive_loss.py +86 -0
- tests/losses/test_dice_ce_loss.py +123 -0
- tests/losses/test_dice_focal_loss.py +124 -0
- tests/losses/test_dice_loss.py +227 -0
- tests/losses/test_ds_loss.py +189 -0
- tests/losses/test_focal_loss.py +379 -0
- tests/losses/test_generalized_dice_focal_loss.py +85 -0
- tests/losses/test_generalized_dice_loss.py +221 -0
- tests/losses/test_generalized_wasserstein_dice_loss.py +234 -0
- tests/losses/test_giou_loss.py +62 -0
- tests/losses/test_hausdorff_loss.py +264 -0
- tests/losses/test_masked_dice_loss.py +152 -0
- tests/losses/test_masked_loss.py +87 -0
- tests/losses/test_multi_scale.py +86 -0
- tests/losses/test_nacl_loss.py +167 -0
- tests/losses/test_perceptual_loss.py +122 -0
- tests/losses/test_spectral_loss.py +86 -0
- tests/losses/test_ssim_loss.py +59 -0
- tests/losses/test_sure_loss.py +72 -0
- tests/losses/test_tversky_loss.py +198 -0
- tests/losses/test_unified_focal_loss.py +66 -0
- tests/metrics/__init__.py +10 -0
- tests/metrics/test_compute_average_precision.py +162 -0
- tests/metrics/test_compute_confusion_matrix.py +294 -0
- tests/metrics/test_compute_f_beta.py +80 -0
- tests/metrics/test_compute_fid_metric.py +40 -0
- tests/metrics/test_compute_froc.py +143 -0
- tests/metrics/test_compute_generalized_dice.py +240 -0
- tests/metrics/test_compute_meandice.py +306 -0
- tests/metrics/test_compute_meaniou.py +223 -0
- tests/metrics/test_compute_mmd_metric.py +56 -0
- tests/metrics/test_compute_multiscalessim_metric.py +83 -0
- tests/metrics/test_compute_panoptic_quality.py +113 -0
- tests/metrics/test_compute_regression_metrics.py +196 -0
- tests/metrics/test_compute_roc_auc.py +155 -0
- tests/metrics/test_compute_variance.py +147 -0
- tests/metrics/test_cumulative.py +63 -0
- tests/metrics/test_cumulative_average.py +74 -0
- tests/metrics/test_cumulative_average_dist.py +48 -0
- tests/metrics/test_hausdorff_distance.py +209 -0
- tests/metrics/test_label_quality_score.py +134 -0
- tests/metrics/test_loss_metric.py +57 -0
- tests/metrics/test_metrics_reloaded.py +96 -0
- tests/metrics/test_ssim_metric.py +78 -0
- tests/metrics/test_surface_dice.py +416 -0
- tests/metrics/test_surface_distance.py +186 -0
- tests/networks/__init__.py +10 -0
- tests/networks/blocks/__init__.py +10 -0
- tests/networks/blocks/dints_block/__init__.py +10 -0
- tests/networks/blocks/dints_block/test_acn_block.py +41 -0
- tests/networks/blocks/dints_block/test_factorized_increase.py +37 -0
- tests/networks/blocks/dints_block/test_factorized_reduce.py +37 -0
- tests/networks/blocks/dints_block/test_p3d_block.py +78 -0
- tests/networks/blocks/test_adn.py +86 -0
- tests/networks/blocks/test_convolutions.py +156 -0
- tests/networks/blocks/test_crf_cpu.py +513 -0
- tests/networks/blocks/test_crf_cuda.py +528 -0
- tests/networks/blocks/test_crossattention.py +185 -0
- tests/networks/blocks/test_denseblock.py +105 -0
- tests/networks/blocks/test_dynunet_block.py +116 -0
- tests/networks/blocks/test_fpn_block.py +88 -0
- tests/networks/blocks/test_localnet_block.py +121 -0
- tests/networks/blocks/test_mlp.py +78 -0
- tests/networks/blocks/test_patchembedding.py +212 -0
- tests/networks/blocks/test_regunet_block.py +103 -0
- tests/networks/blocks/test_se_block.py +85 -0
- tests/networks/blocks/test_se_blocks.py +78 -0
- tests/networks/blocks/test_segresnet_block.py +57 -0
- tests/networks/blocks/test_selfattention.py +232 -0
- tests/networks/blocks/test_simple_aspp.py +87 -0
- tests/networks/blocks/test_spatialattention.py +55 -0
- tests/networks/blocks/test_subpixel_upsample.py +87 -0
- tests/networks/blocks/test_text_encoding.py +49 -0
- tests/networks/blocks/test_transformerblock.py +90 -0
- tests/networks/blocks/test_unetr_block.py +158 -0
- tests/networks/blocks/test_upsample_block.py +134 -0
- tests/networks/blocks/warp/__init__.py +10 -0
- tests/networks/blocks/warp/test_dvf2ddf.py +72 -0
- tests/networks/blocks/warp/test_warp.py +250 -0
- tests/networks/layers/__init__.py +10 -0
- tests/networks/layers/filtering/__init__.py +10 -0
- tests/networks/layers/filtering/test_bilateral_approx_cpu.py +399 -0
- tests/networks/layers/filtering/test_bilateral_approx_cuda.py +404 -0
- tests/networks/layers/filtering/test_bilateral_precise.py +437 -0
- tests/networks/layers/filtering/test_phl_cpu.py +259 -0
- tests/networks/layers/filtering/test_phl_cuda.py +167 -0
- tests/networks/layers/filtering/test_trainable_bilateral.py +474 -0
- tests/networks/layers/filtering/test_trainable_joint_bilateral.py +609 -0
- tests/networks/layers/test_affine_transform.py +385 -0
- tests/networks/layers/test_apply_filter.py +89 -0
- tests/networks/layers/test_channel_pad.py +51 -0
- tests/networks/layers/test_conjugate_gradient.py +56 -0
- tests/networks/layers/test_drop_path.py +46 -0
- tests/networks/layers/test_gaussian.py +317 -0
- tests/networks/layers/test_gaussian_filter.py +206 -0
- tests/networks/layers/test_get_layers.py +65 -0
- tests/networks/layers/test_gmm.py +314 -0
- tests/networks/layers/test_grid_pull.py +93 -0
- tests/networks/layers/test_hilbert_transform.py +131 -0
- tests/networks/layers/test_lltm.py +62 -0
- tests/networks/layers/test_median_filter.py +52 -0
- tests/networks/layers/test_polyval.py +55 -0
- tests/networks/layers/test_preset_filters.py +136 -0
- tests/networks/layers/test_savitzky_golay_filter.py +141 -0
- tests/networks/layers/test_separable_filter.py +87 -0
- tests/networks/layers/test_skip_connection.py +48 -0
- tests/networks/layers/test_vector_quantizer.py +89 -0
- tests/networks/layers/test_weight_init.py +50 -0
- tests/networks/nets/__init__.py +10 -0
- tests/networks/nets/dints/__init__.py +10 -0
- tests/networks/nets/dints/test_dints_cell.py +110 -0
- tests/networks/nets/dints/test_dints_mixop.py +84 -0
- tests/networks/nets/regunet/__init__.py +10 -0
- tests/networks/nets/regunet/test_localnet.py +86 -0
- tests/networks/nets/regunet/test_regunet.py +88 -0
- tests/networks/nets/test_ahnet.py +224 -0
- tests/networks/nets/test_attentionunet.py +88 -0
- tests/networks/nets/test_autoencoder.py +95 -0
- tests/networks/nets/test_autoencoderkl.py +337 -0
- tests/networks/nets/test_basic_unet.py +102 -0
- tests/networks/nets/test_basic_unetplusplus.py +109 -0
- tests/networks/nets/test_bundle_init_bundle.py +55 -0
- tests/networks/nets/test_cell_sam_wrapper.py +58 -0
- tests/networks/nets/test_controlnet.py +215 -0
- tests/networks/nets/test_daf3d.py +62 -0
- tests/networks/nets/test_densenet.py +121 -0
- tests/networks/nets/test_diffusion_model_unet.py +585 -0
- tests/networks/nets/test_dints_network.py +168 -0
- tests/networks/nets/test_discriminator.py +59 -0
- tests/networks/nets/test_dynunet.py +181 -0
- tests/networks/nets/test_efficientnet.py +400 -0
- tests/networks/nets/test_flexible_unet.py +341 -0
- tests/networks/nets/test_fullyconnectednet.py +69 -0
- tests/networks/nets/test_generator.py +59 -0
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- tests/utils/misc/test_str2list.py +33 -0
- tests/utils/test_alias.py +44 -0
- tests/utils/test_component_store.py +73 -0
- tests/utils/test_deprecated.py +455 -0
- tests/utils/test_enum_bound_interp.py +75 -0
- tests/utils/test_evenly_divisible_all_gather_dist.py +50 -0
- tests/utils/test_get_package_version.py +34 -0
- tests/utils/test_handler_logfile.py +84 -0
- tests/utils/test_handler_metric_logger.py +62 -0
- tests/utils/test_list_to_dict.py +43 -0
- tests/utils/test_look_up_option.py +87 -0
- tests/utils/test_optional_import.py +80 -0
- tests/utils/test_pad_mode.py +39 -0
- tests/utils/test_profiling.py +208 -0
- tests/utils/test_rankfilter_dist.py +77 -0
- tests/utils/test_require_pkg.py +83 -0
- tests/utils/test_sample_slices.py +43 -0
- tests/utils/test_set_determinism.py +74 -0
- tests/utils/test_squeeze_unsqueeze.py +71 -0
- tests/utils/test_state_cacher.py +67 -0
- tests/utils/test_torchscript_utils.py +113 -0
- tests/utils/test_version.py +91 -0
- tests/utils/test_version_after.py +65 -0
- tests/utils/type_conversion/__init__.py +10 -0
- tests/utils/type_conversion/test_convert_data_type.py +152 -0
- tests/utils/type_conversion/test_get_equivalent_dtype.py +65 -0
- tests/utils/type_conversion/test_safe_dtype_range.py +99 -0
- tests/visualize/__init__.py +10 -0
- tests/visualize/test_img2tensorboard.py +46 -0
- tests/visualize/test_occlusion_sensitivity.py +128 -0
- tests/visualize/test_plot_2d_or_3d_image.py +74 -0
- tests/visualize/test_vis_cam.py +98 -0
- tests/visualize/test_vis_gradcam.py +211 -0
- tests/visualize/utils/__init__.py +10 -0
- tests/visualize/utils/test_blend_images.py +63 -0
- tests/visualize/utils/test_matshow3d.py +133 -0
- monai_weekly-1.5.dev2506.dist-info/RECORD +0 -427
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/LICENSE +0 -0
- {monai_weekly-1.5.dev2506.dist-info → monai_weekly-1.5.dev2508.dist-info}/WHEEL +0 -0
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# Copyright (c) MONAI Consortium
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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# http://www.apache.org/licenses/LICENSE-2.0
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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from __future__ import annotations
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import json
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import os
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import tempfile
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import unittest
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from unittest.case import skipUnless
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from unittest.mock import patch
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import numpy as np
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import torch
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from parameterized import parameterized
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import monai.networks.nets as nets
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from monai.apps import check_hash
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from monai.bundle import ConfigParser, create_workflow, load
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from monai.bundle.scripts import _examine_monai_version, _list_latest_versions, download
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from monai.utils import optional_import
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from tests.test_utils import (
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SkipIfBeforePyTorchVersion,
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assert_allclose,
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command_line_tests,
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skip_if_downloading_fails,
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skip_if_no_cuda,
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skip_if_quick,
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)
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_, has_huggingface_hub = optional_import("huggingface_hub")
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TEST_CASE_1 = ["test_bundle", None]
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TEST_CASE_2 = ["test_bundle", "0.1.1"]
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TEST_CASE_3 = [
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["model.pt", "model.ts", "network.json", "test_output.pt", "test_input.pt"],
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"test_bundle",
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"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/test_bundle.zip",
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"a131d39a0af717af32d19e565b434928",
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]
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TEST_CASE_4 = [
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["model.pt", "model.ts", "network.json", "test_output.pt", "test_input.pt"],
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"test_bundle",
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"monai-test/test_bundle",
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]
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TEST_CASE_5 = [
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["models/model.pt", "models/model.ts", "configs/train.json"],
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"brats_mri_segmentation",
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"https://api.ngc.nvidia.com/v2/models/nvidia/monaihosting/brats_mri_segmentation/versions/0.4.0/files/brats_mri_segmentation_v0.4.0.zip",
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]
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TEST_CASE_6 = [["models/model.pt", "configs/train.json"], "renalStructures_CECT_segmentation", "0.1.0"]
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TEST_CASE_7 = [
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["model.pt", "model.ts", "network.json", "test_output.pt", "test_input.pt"],
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"test_bundle",
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"Project-MONAI/MONAI-extra-test-data/0.8.1",
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"cuda" if torch.cuda.is_available() else "cpu",
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"model.pt",
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]
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TEST_CASE_8 = [
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"spleen_ct_segmentation",
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"cuda" if torch.cuda.is_available() else "cpu",
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{"spatial_dims": 3, "out_channels": 5},
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]
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TEST_CASE_9 = [
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["test_output.pt", "test_input.pt"],
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"test_bundle",
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"0.1.1",
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"Project-MONAI/MONAI-extra-test-data/0.8.1",
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"cuda" if torch.cuda.is_available() else "cpu",
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"model.ts",
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]
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TEST_CASE_10 = [
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["network.json", "test_output.pt", "test_input.pt", "large_files.yaml"],
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"test_bundle",
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"https://github.com/Project-MONAI/MONAI-extra-test-data/releases/download/0.8.1/test_bundle_v0.1.3.zip",
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{"model.pt": "27952767e2e154e3b0ee65defc5aed38", "model.ts": "97746870fe591f69ac09827175b00675"},
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]
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class TestDownload(unittest.TestCase):
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@parameterized.expand([TEST_CASE_1, TEST_CASE_2])
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@skip_if_quick
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def test_github_download_bundle(self, bundle_name, version):
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bundle_files = ["model.pt", "model.ts", "network.json", "test_output.pt", "test_input.pt"]
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repo = "Project-MONAI/MONAI-extra-test-data/0.8.1"
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hash_val = "a131d39a0af717af32d19e565b434928"
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with skip_if_downloading_fails():
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# download a whole bundle from github releases
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with tempfile.TemporaryDirectory() as tempdir:
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cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--name", bundle_name, "--source", "github"]
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cmd += ["--bundle_dir", tempdir, "--repo", repo]
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if version is not None:
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cmd += ["--version", version]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, "test_bundle", file)
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self.assertTrue(os.path.exists(file_path))
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if file == "network.json":
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self.assertTrue(check_hash(filepath=file_path, val=hash_val))
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@parameterized.expand([TEST_CASE_3])
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@skip_if_quick
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def test_url_download_bundle(self, bundle_files, bundle_name, url, hash_val):
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with skip_if_downloading_fails():
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# download a single file from url, also use `args_file`
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with tempfile.TemporaryDirectory() as tempdir:
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def_args = {"name": bundle_name, "bundle_dir": tempdir, "url": ""}
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def_args_file = os.path.join(tempdir, "def_args.json")
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parser = ConfigParser()
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parser.export_config_file(config=def_args, filepath=def_args_file)
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cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--args_file", def_args_file]
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cmd += ["--url", url, "--source", "github"]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, bundle_name, file)
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self.assertTrue(os.path.exists(file_path))
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if file == "network.json":
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self.assertTrue(check_hash(filepath=file_path, val=hash_val))
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@parameterized.expand([TEST_CASE_4])
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@skip_if_quick
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@skipUnless(has_huggingface_hub, "Requires `huggingface_hub`.")
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def test_hf_hub_download_bundle(self, bundle_files, bundle_name, repo):
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with skip_if_downloading_fails():
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with tempfile.TemporaryDirectory() as tempdir:
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cmd = [
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"coverage",
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"run",
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"-m",
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"monai.bundle",
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"download",
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"--name",
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bundle_name,
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"--source",
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"huggingface_hub",
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]
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cmd += ["--bundle_dir", tempdir, "--repo", repo, "--progress", "False"]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, bundle_name, file)
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self.assertTrue(os.path.exists(file_path))
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@parameterized.expand([TEST_CASE_5])
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@skip_if_quick
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def test_monaihosting_url_download_bundle(self, bundle_files, bundle_name, url):
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with skip_if_downloading_fails():
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# download a single file from url, also use `args_file`
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with tempfile.TemporaryDirectory() as tempdir:
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def_args = {"name": bundle_name, "bundle_dir": tempdir, "url": ""}
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def_args_file = os.path.join(tempdir, "def_args.json")
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parser = ConfigParser()
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parser.export_config_file(config=def_args, filepath=def_args_file)
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cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--args_file", def_args_file]
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cmd += ["--url", url, "--progress", "False"]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, bundle_name, file)
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self.assertTrue(os.path.exists(file_path))
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@parameterized.expand([TEST_CASE_5])
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@skip_if_quick
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def test_ngc_private_source_download_bundle(self, bundle_files, bundle_name, _url):
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with skip_if_downloading_fails():
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# download a single file from url, also use `args_file`
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with tempfile.TemporaryDirectory() as tempdir:
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def_args = {"name": bundle_name, "bundle_dir": tempdir}
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def_args_file = os.path.join(tempdir, "def_args.json")
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parser = ConfigParser()
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parser.export_config_file(config=def_args, filepath=def_args_file)
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cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--args_file", def_args_file]
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cmd += ["--progress", "False", "--source", "ngc_private"]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, bundle_name, file)
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self.assertTrue(os.path.exists(file_path))
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@parameterized.expand([TEST_CASE_6])
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@skip_if_quick
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def test_monaihosting_source_download_bundle(self, bundle_files, bundle_name, version):
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with skip_if_downloading_fails():
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# download a single file from url, also use `args_file`
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with tempfile.TemporaryDirectory() as tempdir:
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def_args = {"name": bundle_name, "bundle_dir": tempdir, "version": version}
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def_args_file = os.path.join(tempdir, "def_args.json")
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parser = ConfigParser()
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parser.export_config_file(config=def_args, filepath=def_args_file)
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cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--args_file", def_args_file]
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cmd += ["--progress", "False", "--source", "monaihosting"]
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command_line_tests(cmd)
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for file in bundle_files:
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file_path = os.path.join(tempdir, bundle_name, file)
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self.assertTrue(os.path.exists(file_path))
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@patch("monai.bundle.scripts.get_versions", return_value={"version": "1.2"})
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def test_examine_monai_version(self, mock_get_versions):
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self.assertTrue(_examine_monai_version("1.1")[0]) # Should return True, compatible
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self.assertTrue(_examine_monai_version("1.2rc1")[0]) # Should return True, compatible
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self.assertFalse(_examine_monai_version("1.3")[0]) # Should return False, not compatible
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@patch("monai.bundle.scripts.get_versions", return_value={"version": "1.2rc1"})
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def test_examine_monai_version_rc(self, mock_get_versions):
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self.assertTrue(_examine_monai_version("1.2")[0]) # Should return True, compatible
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self.assertFalse(_examine_monai_version("1.3")[0]) # Should return False, not compatible
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def test_list_latest_versions(self):
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"""Test listing of the latest versions."""
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data = {
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"modelVersions": [
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{"createdDate": "2021-01-01", "versionId": "1.0"},
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{"createdDate": "2021-01-02", "versionId": "1.1"},
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{"createdDate": "2021-01-03", "versionId": "1.2"},
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]
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}
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self.assertEqual(_list_latest_versions(data), ["1.2", "1.1", "1.0"])
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self.assertEqual(_list_latest_versions(data, max_versions=2), ["1.2", "1.1"])
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data = {
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"modelVersions": [
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{"createdDate": "2021-01-01", "versionId": "1.0"},
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{"createdDate": "2021-01-02", "versionId": "1.1"},
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]
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}
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self.assertEqual(_list_latest_versions(data), ["1.1", "1.0"])
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@skip_if_quick
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@patch("monai.bundle.scripts.get_versions", return_value={"version": "1.2"})
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def test_download_monaihosting(self, mock_get_versions):
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"""Test checking MONAI version from a metadata file."""
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with patch("monai.bundle.scripts.logger") as mock_logger:
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with tempfile.TemporaryDirectory() as tempdir:
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download(name="spleen_ct_segmentation", bundle_dir=tempdir, source="monaihosting")
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# Should have a warning message because the latest version is using monai > 1.2
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mock_logger.warning.assert_called_once()
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@skip_if_quick
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@patch("monai.bundle.scripts.get_versions", return_value={"version": "1.3"})
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def test_download_ngc(self, mock_get_versions):
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"""Test checking MONAI version from a metadata file."""
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with patch("monai.bundle.scripts.logger") as mock_logger:
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with tempfile.TemporaryDirectory() as tempdir:
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download(name="spleen_ct_segmentation", bundle_dir=tempdir, source="ngc")
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mock_logger.warning.assert_not_called()
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@skip_if_no_cuda
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class TestLoad(unittest.TestCase):
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@parameterized.expand([TEST_CASE_7])
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@skip_if_quick
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def test_load_weights(self, bundle_files, bundle_name, repo, device, model_file):
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with skip_if_downloading_fails():
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# download bundle, and load weights from the downloaded path
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with tempfile.TemporaryDirectory() as tempdir:
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# load weights
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weights = load(
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name=bundle_name,
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model_file=model_file,
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bundle_dir=tempdir,
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repo=repo,
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source="github",
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progress=False,
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device=device,
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return_state_dict=True,
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)
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# prepare network
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with open(os.path.join(tempdir, bundle_name, bundle_files[2])) as f:
|
282
|
+
net_args = json.load(f)["network_def"]
|
283
|
+
model_name = net_args["_target_"]
|
284
|
+
del net_args["_target_"]
|
285
|
+
model = getattr(nets, model_name)(**net_args)
|
286
|
+
model.to(device)
|
287
|
+
model.load_state_dict(weights)
|
288
|
+
model.eval()
|
289
|
+
|
290
|
+
# prepare data and test
|
291
|
+
input_tensor = torch.load(os.path.join(tempdir, bundle_name, bundle_files[4]), map_location=device)
|
292
|
+
output = model.forward(input_tensor)
|
293
|
+
expected_output = torch.load(os.path.join(tempdir, bundle_name, bundle_files[3]), map_location=device)
|
294
|
+
assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
|
295
|
+
|
296
|
+
# load instantiated model directly and test, since the bundle has been downloaded,
|
297
|
+
# there is no need to input `repo`
|
298
|
+
_model_2 = getattr(nets, model_name)(**net_args)
|
299
|
+
model_2 = load(
|
300
|
+
name=bundle_name,
|
301
|
+
model=_model_2,
|
302
|
+
model_file=model_file,
|
303
|
+
bundle_dir=tempdir,
|
304
|
+
progress=False,
|
305
|
+
device=device,
|
306
|
+
source="github",
|
307
|
+
return_state_dict=False,
|
308
|
+
)
|
309
|
+
model_2.eval()
|
310
|
+
output_2 = model_2.forward(input_tensor)
|
311
|
+
assert_allclose(output_2, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
|
312
|
+
|
313
|
+
# test compatibility with return_state_dict=True.
|
314
|
+
model_3 = load(
|
315
|
+
name=bundle_name,
|
316
|
+
model_file=model_file,
|
317
|
+
bundle_dir=tempdir,
|
318
|
+
progress=False,
|
319
|
+
device=device,
|
320
|
+
net_name=model_name,
|
321
|
+
source="github",
|
322
|
+
return_state_dict=False,
|
323
|
+
**net_args,
|
324
|
+
)
|
325
|
+
model_3.eval()
|
326
|
+
output_3 = model_3.forward(input_tensor)
|
327
|
+
assert_allclose(output_3, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
|
328
|
+
|
329
|
+
@parameterized.expand([TEST_CASE_8])
|
330
|
+
@skip_if_quick
|
331
|
+
def test_load_weights_with_net_override(self, bundle_name, device, net_override):
|
332
|
+
with skip_if_downloading_fails():
|
333
|
+
# download bundle, and load weights from the downloaded path
|
334
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
335
|
+
# load weights
|
336
|
+
model = load(
|
337
|
+
name=bundle_name,
|
338
|
+
bundle_dir=tempdir,
|
339
|
+
source="monaihosting",
|
340
|
+
progress=False,
|
341
|
+
device=device,
|
342
|
+
return_state_dict=False,
|
343
|
+
)
|
344
|
+
|
345
|
+
# prepare data and test
|
346
|
+
input_tensor = torch.rand(1, 1, 96, 96, 96).to(device)
|
347
|
+
output = model(input_tensor)
|
348
|
+
model_path = f"{tempdir}/spleen_ct_segmentation/models/model.pt"
|
349
|
+
workflow = create_workflow(
|
350
|
+
config_file=f"{tempdir}/spleen_ct_segmentation/configs/train.json", workflow_type="train"
|
351
|
+
)
|
352
|
+
expected_model = workflow.network_def.to(device)
|
353
|
+
expected_model.load_state_dict(torch.load(model_path))
|
354
|
+
expected_output = expected_model(input_tensor)
|
355
|
+
assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
|
356
|
+
|
357
|
+
# using net_override to override kwargs in network directly
|
358
|
+
model_2 = load(
|
359
|
+
name=bundle_name,
|
360
|
+
bundle_dir=tempdir,
|
361
|
+
source="monaihosting",
|
362
|
+
progress=False,
|
363
|
+
device=device,
|
364
|
+
return_state_dict=False,
|
365
|
+
net_override=net_override,
|
366
|
+
)
|
367
|
+
|
368
|
+
# prepare data and test
|
369
|
+
input_tensor = torch.rand(1, 1, 96, 96, 96).to(device)
|
370
|
+
output = model_2(input_tensor)
|
371
|
+
expected_shape = (1, 5, 96, 96, 96)
|
372
|
+
np.testing.assert_equal(output.shape, expected_shape)
|
373
|
+
|
374
|
+
@parameterized.expand([TEST_CASE_9])
|
375
|
+
@skip_if_quick
|
376
|
+
@SkipIfBeforePyTorchVersion((1, 7, 1))
|
377
|
+
def test_load_ts_module(self, bundle_files, bundle_name, version, repo, device, model_file):
|
378
|
+
with skip_if_downloading_fails():
|
379
|
+
# load ts module
|
380
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
381
|
+
# load ts module
|
382
|
+
model_ts, metadata, extra_file_dict = load(
|
383
|
+
name=bundle_name,
|
384
|
+
version=version,
|
385
|
+
model_file=model_file,
|
386
|
+
load_ts_module=True,
|
387
|
+
bundle_dir=tempdir,
|
388
|
+
repo=repo,
|
389
|
+
progress=False,
|
390
|
+
device=device,
|
391
|
+
source="github",
|
392
|
+
config_files=("network.json",),
|
393
|
+
)
|
394
|
+
|
395
|
+
# prepare and test ts
|
396
|
+
input_tensor = torch.load(os.path.join(tempdir, bundle_name, bundle_files[1]), map_location=device)
|
397
|
+
output = model_ts.forward(input_tensor)
|
398
|
+
expected_output = torch.load(os.path.join(tempdir, bundle_name, bundle_files[0]), map_location=device)
|
399
|
+
assert_allclose(output, expected_output, atol=1e-4, rtol=1e-4, type_test=False)
|
400
|
+
# test metadata
|
401
|
+
self.assertTrue(metadata["pytorch_version"] == "1.7.1")
|
402
|
+
# test extra_file_dict
|
403
|
+
self.assertTrue("network.json" in extra_file_dict.keys())
|
404
|
+
|
405
|
+
|
406
|
+
class TestDownloadLargefiles(unittest.TestCase):
|
407
|
+
@parameterized.expand([TEST_CASE_10])
|
408
|
+
@skip_if_quick
|
409
|
+
def test_url_download_large_files(self, bundle_files, bundle_name, url, hash_val):
|
410
|
+
with skip_if_downloading_fails():
|
411
|
+
# download a single file from url, also use `args_file`
|
412
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
413
|
+
def_args = {"name": bundle_name, "bundle_dir": tempdir, "url": ""}
|
414
|
+
def_args_file = os.path.join(tempdir, "def_args.json")
|
415
|
+
parser = ConfigParser()
|
416
|
+
parser.export_config_file(config=def_args, filepath=def_args_file)
|
417
|
+
cmd = ["coverage", "run", "-m", "monai.bundle", "download", "--args_file", def_args_file]
|
418
|
+
cmd += ["--url", url, "--source", "github"]
|
419
|
+
command_line_tests(cmd)
|
420
|
+
for file in bundle_files:
|
421
|
+
file_path = os.path.join(tempdir, bundle_name, file)
|
422
|
+
print(file_path)
|
423
|
+
self.assertTrue(os.path.exists(file_path))
|
424
|
+
|
425
|
+
# download large files
|
426
|
+
bundle_path = os.path.join(tempdir, bundle_name)
|
427
|
+
cmd = ["coverage", "run", "-m", "monai.bundle", "download_large_files", "--bundle_path", bundle_path]
|
428
|
+
command_line_tests(cmd)
|
429
|
+
for file in ["model.pt", "model.ts"]:
|
430
|
+
file_path = os.path.join(tempdir, bundle_name, f"models/{file}")
|
431
|
+
self.assertTrue(check_hash(filepath=file_path, val=hash_val[file]))
|
432
|
+
|
433
|
+
|
434
|
+
if __name__ == "__main__":
|
435
|
+
unittest.main()
|
@@ -0,0 +1,94 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import unittest
|
15
|
+
|
16
|
+
from parameterized import parameterized
|
17
|
+
|
18
|
+
from monai.bundle import get_all_bundles_list, get_bundle_info, get_bundle_versions
|
19
|
+
from monai.utils import optional_import
|
20
|
+
from tests.test_utils import SkipIfNoModule, skip_if_downloading_fails, skip_if_quick, skip_if_windows
|
21
|
+
|
22
|
+
requests, _ = optional_import("requests")
|
23
|
+
|
24
|
+
TEST_CASE_1 = [{"bundle_name": "brats_mri_segmentation", "tag": "hosting_storage_v1"}]
|
25
|
+
|
26
|
+
TEST_CASE_2 = [
|
27
|
+
{"bundle_name": "spleen_ct_segmentation", "version": "0.1.0", "auth_token": None, "tag": "hosting_storage_v1"}
|
28
|
+
]
|
29
|
+
|
30
|
+
TEST_CASE_3 = [{"tag": "hosting_storage_v1"}]
|
31
|
+
|
32
|
+
TEST_CASE_4 = [{"tag": "dev"}]
|
33
|
+
|
34
|
+
TEST_CASE_5 = [{"bundle_name": "brats_mri_segmentation", "tag": "dev"}]
|
35
|
+
|
36
|
+
TEST_CASE_6 = [{"bundle_name": "spleen_ct_segmentation", "version": "0.1.0", "auth_token": None, "tag": "dev"}]
|
37
|
+
|
38
|
+
TEST_CASE_FAKE_TOKEN_1 = [{"bundle_name": "spleen_ct_segmentation", "version": "0.1.0", "auth_token": "ghp_errortoken"}]
|
39
|
+
|
40
|
+
TEST_CASE_FAKE_TOKEN_2 = [
|
41
|
+
{"bundle_name": "spleen_ct_segmentation", "version": "0.1.0", "auth_token": "ghp_errortoken", "tag": "dev"}
|
42
|
+
]
|
43
|
+
|
44
|
+
|
45
|
+
@skip_if_windows
|
46
|
+
@SkipIfNoModule("requests")
|
47
|
+
class TestGetBundleData(unittest.TestCase):
|
48
|
+
@parameterized.expand([TEST_CASE_3, TEST_CASE_4])
|
49
|
+
@skip_if_quick
|
50
|
+
def test_get_all_bundles_list(self, params):
|
51
|
+
with skip_if_downloading_fails():
|
52
|
+
output = get_all_bundles_list(**params)
|
53
|
+
self.assertIsInstance(output, list)
|
54
|
+
self.assertIsInstance(output[0], tuple)
|
55
|
+
self.assertTrue(len(output[0]) == 2)
|
56
|
+
|
57
|
+
@parameterized.expand([TEST_CASE_1, TEST_CASE_5])
|
58
|
+
@skip_if_quick
|
59
|
+
def test_get_bundle_versions(self, params):
|
60
|
+
with skip_if_downloading_fails():
|
61
|
+
output = get_bundle_versions(**params)
|
62
|
+
self.assertIsInstance(output, dict)
|
63
|
+
self.assertIn("latest_version", output)
|
64
|
+
self.assertIn("all_versions", output)
|
65
|
+
self.assertIn("0.1.0", output["all_versions"])
|
66
|
+
|
67
|
+
@parameterized.expand([TEST_CASE_1, TEST_CASE_2])
|
68
|
+
@skip_if_quick
|
69
|
+
def test_get_bundle_info(self, params):
|
70
|
+
with skip_if_downloading_fails():
|
71
|
+
output = get_bundle_info(**params)
|
72
|
+
self.assertIsInstance(output, dict)
|
73
|
+
for key in ["id", "name", "size", "download_count", "browser_download_url"]:
|
74
|
+
self.assertTrue(key in output)
|
75
|
+
|
76
|
+
@parameterized.expand([TEST_CASE_5, TEST_CASE_6])
|
77
|
+
@skip_if_quick
|
78
|
+
def test_get_bundle_info_monaihosting(self, params):
|
79
|
+
with skip_if_downloading_fails():
|
80
|
+
output = get_bundle_info(**params)
|
81
|
+
self.assertIsInstance(output, dict)
|
82
|
+
for key in ["name", "browser_download_url"]:
|
83
|
+
self.assertTrue(key in output)
|
84
|
+
|
85
|
+
@parameterized.expand([TEST_CASE_FAKE_TOKEN_1, TEST_CASE_FAKE_TOKEN_2])
|
86
|
+
@skip_if_quick
|
87
|
+
def test_fake_token(self, params):
|
88
|
+
with skip_if_downloading_fails():
|
89
|
+
with self.assertRaises(requests.exceptions.HTTPError):
|
90
|
+
get_bundle_info(**params)
|
91
|
+
|
92
|
+
|
93
|
+
if __name__ == "__main__":
|
94
|
+
unittest.main()
|
@@ -0,0 +1,41 @@
|
|
1
|
+
# Copyright (c) MONAI Consortium
|
2
|
+
# Licensed under the Apache License, Version 2.0 (the "License");
|
3
|
+
# you may not use this file except in compliance with the License.
|
4
|
+
# You may obtain a copy of the License at
|
5
|
+
# http://www.apache.org/licenses/LICENSE-2.0
|
6
|
+
# Unless required by applicable law or agreed to in writing, software
|
7
|
+
# distributed under the License is distributed on an "AS IS" BASIS,
|
8
|
+
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
9
|
+
# See the License for the specific language governing permissions and
|
10
|
+
# limitations under the License.
|
11
|
+
|
12
|
+
from __future__ import annotations
|
13
|
+
|
14
|
+
import tempfile
|
15
|
+
import unittest
|
16
|
+
from unittest.case import skipUnless
|
17
|
+
from unittest.mock import patch
|
18
|
+
|
19
|
+
from parameterized import parameterized
|
20
|
+
|
21
|
+
from monai.bundle import push_to_hf_hub
|
22
|
+
from monai.utils import optional_import
|
23
|
+
from tests.test_utils import skip_if_quick
|
24
|
+
|
25
|
+
huggingface_hub, has_huggingface_hub = optional_import("huggingface_hub")
|
26
|
+
|
27
|
+
TEST_CASE_1 = ["monai-test/test_bundle_push", "test_bundle"]
|
28
|
+
|
29
|
+
|
30
|
+
class TestPushToHuggingFaceHub(unittest.TestCase):
|
31
|
+
@parameterized.expand([TEST_CASE_1])
|
32
|
+
@skip_if_quick
|
33
|
+
@skipUnless(has_huggingface_hub, "Requires `huggingface_hub` package.")
|
34
|
+
@patch.object(huggingface_hub.HfApi, "create_repo")
|
35
|
+
@patch.object(huggingface_hub.HfApi, "upload_folder")
|
36
|
+
@patch.object(huggingface_hub.HfApi, "create_tag")
|
37
|
+
def test_push_to_huggingface_hub(self, repo, bundle_name, test_createrepo, test_uploadfolder, test_createtag):
|
38
|
+
test_uploadfolder.return_value = "https://hf.co/repo/test"
|
39
|
+
with tempfile.TemporaryDirectory() as tempdir:
|
40
|
+
repo_url = push_to_hf_hub(repo, bundle_name, tempdir)
|
41
|
+
self.assertEqual("https://hf.co/repo/test", repo_url)
|