meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

meta_consent/models/subject_consent_v1_ext.py

@@ -0,0 +1,29 @@
+from django.db import models
+from edc_action_item.models import ActionModelMixin
+from edc_consent.model_mixins import ConsentExtensionModelMixin
+from edc_model.models import BaseUuidModel
+from edc_sites.model_mixins import SiteModelMixin
+
+from ..constants import CONSENT_V1_EXTENSION_ACTION
+from .subject_consent_v1 import SubjectConsentV1
+
+
+class SubjectConsentV1Ext(
+    ConsentExtensionModelMixin, SiteModelMixin, ActionModelMixin, BaseUuidModel
+):
+    """A consent extension to allow a participant to extend followup
+    up to 48 months.
+    """
+
+    subject_consent = models.ForeignKey(SubjectConsentV1, on_delete=models.PROTECT)
+
+    action_name = CONSENT_V1_EXTENSION_ACTION
+
+    class Meta(
+        ConsentExtensionModelMixin.Meta,
+        SiteModelMixin.Meta,
+        ActionModelMixin.Meta,
+        BaseUuidModel.Meta,
+    ):
+        verbose_name = "Consent V1 Extension"
+        verbose_name_plural = "Consent V1 Extension"

meta_consent/tests/holidays.csv

@@ -12,4 +12,4 @@
 2019-12-01,Mawlid Day,tanzania
 2019-12-09,Independence Day,tanzania
 2019-12-25,Christmas Day,tanzania
-2019-12-26,Boxing Day,tanzania
+2019-12-26,Boxing Day,tanzania

meta_consent/tests/tests/test_form_validators.py

@@ -7,7 +7,7 @@ from edc_consent.constants import HOSPITAL_NUMBER
 from edc_constants.constants import FEMALE
 from edc_utils.date import get_utcnow
 
-from meta_consent.forms import SubjectConsentFormValidator
+from meta_consent.form_validators import SubjectConsentFormValidator
 from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
 
 

meta_dashboard/locale/lg/LC_MESSAGES/django.po

@@ -0,0 +1,30 @@
+# SOME DESCRIPTIVE TITLE.
+# Copyright (C) YEAR THE PACKAGE'S COPYRIGHT HOLDER
+# This file is distributed under the same license as the PACKAGE package.
+# FIRST AUTHOR <EMAIL@ADDRESS>, YEAR.
+#
+#, fuzzy
+msgid ""
+msgstr ""
+"Project-Id-Version: PACKAGE VERSION\n"
+"Report-Msgid-Bugs-To: \n"
+"POT-Creation-Date: 2024-11-19 23:35+0300\n"
+"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
+"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
+"Language-Team: LANGUAGE <LL@li.org>\n"
+"Language: \n"
+"MIME-Version: 1.0\n"
+"Content-Type: text/plain; charset=UTF-8\n"
+"Content-Transfer-Encoding: 8bit\n"
+
+#: meta_dashboard/view_utils/subject_screening_button.py:42
+msgid "View"
+msgstr ""
+
+#: meta_dashboard/view_utils/subject_screening_button.py:44
+msgid "Edit"
+msgstr ""
+
+#: meta_dashboard/views/subject/dashboard/dashboard_view.py:17
+msgid "Audit"
+msgstr ""

meta_dashboard/locale/sw/LC_MESSAGES/django.po

@@ -8,7 +8,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: PACKAGE VERSION\n"
 "Report-Msgid-Bugs-To: \n"
-"POT-Creation-Date: 2023-09-07 09:35-0500\n"
+"POT-Creation-Date: 2024-11-19 23:35+0300\n"
 "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
 "Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
 "Language-Team: LANGUAGE <LL@li.org>\n"
@@ -17,6 +17,15 @@ msgstr ""
 "Content-Type: text/plain; charset=UTF-8\n"
 "Content-Transfer-Encoding: 8bit\n"
 "Plural-Forms: nplurals=2; plural=(n != 1);\n"
-#: views/subject/dashboard/dashboard_view.py:9
+
+#: meta_dashboard/view_utils/subject_screening_button.py:42
+msgid "View"
+msgstr ""
+
+#: meta_dashboard/view_utils/subject_screening_button.py:44
+msgid "Edit"
+msgstr ""
+
+#: meta_dashboard/views/subject/dashboard/dashboard_view.py:17
 msgid "Audit"
 msgstr ""

meta_dashboard/navbars.py

@@ -1,6 +1,7 @@
 from edc_adverse_event.navbars import ae_navbar_item, tmg_navbar_item
 from edc_data_manager.navbar_item import dm_navbar_item
 from edc_navbar import Navbar, NavbarItem, site_navbars
+from edc_pharmacy.navbars import pharmacy_navbar_item
 from edc_review_dashboard.navbars import navbar_item as review_navbar_item
 
 no_url_namespace = False  # True if settings.APP_NAME == "meta_dashboard" else False
@@ -32,9 +33,10 @@ navbar.register(
     )
 )
 
+
+navbar.register(pharmacy_navbar_item)
 navbar.register(review_navbar_item)
 navbar.register(tmg_navbar_item)
 navbar.register(ae_navbar_item)
 navbar.register(dm_navbar_item)
-
 site_navbars.register(navbar)

meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html

@@ -12,4 +12,4 @@
 </ul>
 {% endif %}
 </div>
-{% endif %}
+{% endif %}

meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html

@@ -12,4 +12,4 @@
    class="btn btn-sm btn-{% if p3 == YES %}success{% elif p1 == YES and p2 == YES and p3 == TBD %}warning{% else %}default{% endif %}"
        {% if p3_enabled %}href="{{ href_p3 }}"{% else %} disabled {% endif %}>
     <i class="fas fa-pencil-alt fa-sm"></i> P3
-</a>
+</a>

meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html

@@ -3,12 +3,12 @@
 {% load edc_dashboard_extras edc_subject_dashboard_extras meta_dashboard_extras %}
 
 {% block listboard_panel %}
-
+    {# screening is now disabled for live systems #}
     <a id="subjectscreening_add"
         title="{% if perms.meta_screening.add_screeningpartone %}add screening{% else %}check your permissions{% endif %}"
         class="btn btn-sm btn-default" role="button"
-        {% if not perms.meta_screening.add_screeningpartone %}disabled{% endif %}
-        href="{% if perms.meta_screening.add_screeningpartone %}{{ subject_screening_add_url }}?next={{ screening_listboard_url }}{% endif %}">
+        {% if not perms.meta_screening.add_screeningpartone or not LIVE_SYSTEM %}disabled href="#"{% else %}
+        href="{% if perms.meta_screening.add_screeningpartone %}{{ subject_screening_add_url }}?next={{ screening_listboard_url }}{% endif %}"{% endif %}>
             <i class="fas fa-plus fa-sm"></i> Add Subject Screening {% if meta_version == 3 %}(META3){% endif %}
     </a>
 
@@ -51,7 +51,7 @@
 
 
 {% block listboard_table_columns %}
-    <td>{{ result.human_readable_identifier }} </td>
+    <td>{{ result.human_readable_identifier }}</td>
     <td nowrap>
         {% if result.repeat_glucose_performed == 'PENDING' %}
             {% if result.repeat_due_in_days < 3 %}

meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html

@@ -0,0 +1,24 @@
+{% extends 'edc_subject_dashboard/bootstrap3/dashboard/sidebar.html' %}
+{% load edc_subject_dashboard_extras %}
+
+{% block consents %}
+    {{ block.super }}
+    {% if subject_consent_v1_ext %}
+      <table class="table table-condensed">
+        <thead></thead>
+        <tbody>
+          <tr>
+            <td class="{% if subject_consent_v1_ext %}default{% else %}warning{% endif %}">
+            {% render_subject_consent_dashboard_button subject_consent_v1_ext appointment %}
+            </td>
+            <td class="{% if subject_consent_v1_ext %}default{% else %}warning{% endif %}">
+                <span class="h6">{{ subject_consent_v1_ext.verbose_name|title }}&nbsp;<span class="text {% if subject_consent_v1_ext.agrees_to_extension == YES %}text-success{% else %}text-danger{% endif %}">{{ subject_consent_v1_ext.agrees_to_extension }}</span>
+                <span class="text text-muted">{{ subject_consent_v1_ext.report_datetime|date:"SHORT_DATE_FORMAT"}}</span>
+              </span>
+            </td>
+          </tr>
+        </tbody>
+      </table>
+    {% endif %}
+
+{% endblock consents %}

meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html

@@ -9,3 +9,6 @@
     {% include "meta_dashboard/bootstrap3/subject/dashboard/top_bar.html" %}
 
 {% endblock top_bar %}
+
+
+{% block side_bar %}{% include 'meta_dashboard/bootstrap3/subject/dashboard/sidebar.html' %}{% endblock side_bar %}

meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html

@@ -26,8 +26,7 @@
 {% endblock listboard_table_button_column %}
 
 {% block listboard_table_columns %}
-    <td>{{ result.subject_identifier }}
-    </td>
+    <td>{{ result.subject_identifier }}</td>
     <td>
        {% if result.gender == MALE %}
            <i class="fas fa-male fa-lg"></i>

meta_dashboard/templatetags/meta_dashboard_extras.py

@@ -9,7 +9,7 @@ from edc_dashboard.url_names import url_names
 from edc_dashboard.utils import get_bootstrap_version
 
 from meta_consent.models import SubjectConsent
-from meta_dashboard.view_utils.subject_screening_button import (
+from meta_dashboard.view_utils import (
     SubjectScreeningPartOneButton,
     SubjectScreeningPartThreeButton,
     SubjectScreeningPartTwoButton,

meta_dashboard/tests/holidays.csv

@@ -12,4 +12,4 @@
 2019-12-01,Mawlid Day,tanzania
 2019-12-09,Independence Day,tanzania
 2019-12-25,Christmas Day,tanzania
-2019-12-26,Boxing Day,tanzania
+2019-12-26,Boxing Day,tanzania

meta_dashboard/tests/urls.py

@@ -47,7 +47,6 @@ urlpatterns = [
     path("edc_export/", include("edc_export.urls")),
     path("edc_lab_dashboard/", include("edc_lab_dashboard.urls")),
     path("edc_locator/", include("edc_locator.urls")),
-    path("edc_pharmacy_dashboard/", include("edc_pharmacy_dashboard.urls")),
     path("edc_protocol/", include("edc_protocol.urls")),
     path("edc_subject_dashboard/", include("edc_subject_dashboard.urls")),
     path("edc_visit_schedule/", include("edc_visit_schedule.urls")),

meta_dashboard/view_utils/__init__.py

@@ -0,0 +1,6 @@
+from .subject_screening_button import (
+    SubjectScreeningButton,
+    SubjectScreeningPartOneButton,
+    SubjectScreeningPartThreeButton,
+    SubjectScreeningPartTwoButton,
+)

meta_dashboard/view_utils/subject_screening_button.py

@@ -5,10 +5,10 @@ from typing import Type
 
 from django.utils.translation import gettext as _
 from edc_constants.constants import TBD, YES
-from edc_subject_dashboard.view_utils import ADD, CHANGE, VIEW
-from edc_subject_dashboard.view_utils.subject_screening_button import (
+from edc_subject_dashboard.view_utils import (
     SubjectScreeningButton as BaseSubjectScreeningButton,
 )
+from edc_view_utils import ADD, CHANGE, VIEW
 
 from meta_screening.models import ScreeningPartOne, ScreeningPartThree, ScreeningPartTwo
 

meta_dashboard/views/subject/dashboard/dashboard_view.py

@@ -1,9 +1,47 @@
+from typing import Any
+
+from django.apps import apps as django_apps
+from django.core.checks import messages
+from django.core.exceptions import ObjectDoesNotExist
+from django.urls import reverse
+from django.utils.html import format_html
 from django.utils.translation import gettext_lazy as _
 from edc_subject_dashboard.views import SubjectDashboardView
 
+from meta_reports.models import Endpoints, GlucoseSummary
+
 
 class DashboardView(SubjectDashboardView):
     consent_model = "meta_consent.subjectconsentv1"
     navbar_selected_item = "consented_subject"
     visit_model = "meta_subject.subjectvisit"
     history_button_label = _("Audit")
+
+    def get_context_data(self, **kwargs) -> dict[str, Any]:
+        """Add message if subject reaches DM Endpoint."""
+        context = super().get_context_data(**kwargs)
+        context.update(subject_consent_v1_ext=self.subject_consent_v1_ext)
+        try:
+            Endpoints.objects.get(subject_identifier=self.subject_identifier)
+        except ObjectDoesNotExist:
+            pass
+        else:
+            url = reverse("meta_reports_admin:meta_reports_glucosesummary_changelist")
+            url = f"{url}?q={self.subject_identifier}"
+            message = _(
+                format_html(
+                    f"Subject has reached the protocol endpoint. "
+                    f'See <A href="{url}">{GlucoseSummary._meta.verbose_name}</A>'
+                )
+            )
+            self.message_user(message, level=messages.WARNING)
+        return context
+
+    @property
+    def subject_consent_v1_ext(self):
+        model_cls = django_apps.get_model("meta_consent.subjectconsentv1ext")
+        try:
+            obj = model_cls.objects.get(subject_identifier=self.subject_identifier)
+        except ObjectDoesNotExist:
+            obj = None
+        return obj

meta_edc/__init__.py

@@ -1,7 +1,14 @@
 import os
 from importlib.metadata import PackageNotFoundError, version
 
+from .celery import app as celery_app
+
 try:
     __version__ = version(os.getcwd().split(os.sep)[-1])
 except PackageNotFoundError:
     __version__ = None
+
+
+__all__ = ["celery_app", "__version__"]
+
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")

meta_edc/celery.py

@@ -1,23 +1,14 @@
-from __future__ import absolute_import, unicode_literals
-
 import os
 
 from celery import Celery
-from django.conf import settings
 
-# set the default Django settings module for the 'celery' program.
-os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings")
+# load settings
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
 
+# config celery
 app = Celery("meta_edc")
-
-# Using a string here means the worker doesn't have to serialize
-# the configuration object to child processes.
-# - namespace='CELERY' means all celery-related configuration keys
-#   should have a `CELERY_` prefix.
 app.config_from_object("django.conf:settings", namespace="CELERY")
-
-# Load task modules from all registered Django app configs.
-app.autodiscover_tasks(lambda: settings.INSTALLED_APPS)
+app.autodiscover_tasks()
 
 
 @app.task(bind=True)

meta_edc/celery_live.py

@@ -0,0 +1,18 @@
+import os
+
+from celery import Celery
+
+# load settings
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
+
+# config celery
+app = Celery("meta_edc")
+app.config_from_object("django.conf:settings", namespace="CELERY")
+app.autodiscover_tasks()
+
+# app.conf.task_routes = {"*": {"queue": "live_queue"}}
+
+
+@app.task(bind=True)
+def debug_task(self):
+    print("Request: {0!r}".format(self.request))

meta_edc/celery_uat.py

@@ -0,0 +1,24 @@
+import os
+
+from celery import Celery
+
+# from kombu import Queue
+
+# load settings
+os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
+
+# config celery
+app = Celery("meta_edc")
+app.config_from_object("django.conf:settings", namespace="CELERY")
+app.autodiscover_tasks()
+
+# app.conf.task_default_queue = "workuatq1"
+# app.conf.task_queues = (Queue("workuatq1", routing_key="task.#"),)
+# app.conf.task_default_exchange = "workuatq1"
+# app.conf.task_default_exchange_type = "topic"
+# app.conf.task_default_routing_key = "task.workuatq1"
+
+
+@app.task(bind=True)
+def debug_task(self):
+    print("Request: {0!r}".format(self.request))

meta_edc/management/commands/update_forms_reference.py

@@ -20,9 +20,13 @@ def update_forms_reference(sender=None, **kwargs):
     doc_folder = os.path.join(settings.BASE_DIR, "docs")
     if not os.path.exists(doc_folder):
         os.mkdir(doc_folder)
-    forms = FormsReference(visit_schedules=[visit_schedule], admin_site=meta_subject_admin)
+    forms = FormsReference(
+        visit_schedules=[visit_schedule],
+        admin_site=meta_subject_admin,
+        add_per_form_timestamp=False,
+    )
     path = os.path.join(doc_folder, "forms_reference.md")
-    forms.to_file(path=path, overwrite=True)
+    forms.to_file(path=path, overwrite=True, pad=0)
 
 
 class Command(BaseCommand):

meta_edc/navbars.py

@@ -5,6 +5,7 @@ from edc_adverse_event.navbars import ae_navbar_item, tmg_navbar_item
 from edc_data_manager.navbar_item import dm_navbar_item
 from edc_lab_dashboard.navbars import navbar as lab_navbar
 from edc_navbar import Navbar, site_navbars
+from edc_pharmacy.navbars import pharmacy_navbar_item
 from edc_review_dashboard.navbars import navbar as review_navbar
 
 from meta_dashboard.navbars import navbar as meta_dashboard_navbar
@@ -29,9 +30,9 @@ navbar.register(
 for navbar_item in review_navbar.navbar_items:
     navbar.register(navbar_item)
 
+navbar.register(pharmacy_navbar_item)
 navbar.register(tmg_navbar_item)
 navbar.register(ae_navbar_item)
 navbar.register(dm_navbar_item)
 
-
 site_navbars.register(navbar)

meta_edc/settings/debug.py

@@ -9,21 +9,21 @@ print(f"Settings file {__file__}")
 # TZ Sites:
 # SITE_ID = SiteID(default=20)  # Amana
 # SITE_ID = SiteID(default=10)  # Hindu Mandal
-# SITE_ID = SiteID(default=40)  # Mwananyamala
+SITE_ID = SiteID(default=40)  # Mwananyamala
 # SITE_ID = SiteID(default=50)  # Mbagala
 # SITE_ID = SiteID(default=60)  # Mnazi-Moja
-SITE_ID = SiteID(default=30)  # Temeke
-
+# SITE_ID = SiteID(default=30)  # Temeke
+INDEX_PAGE = "http://localhost:8000"
 EDC_SITES_UAT_DOMAIN = False
 DEBUG = True
 ALLOWED_HOSTS = [
     "localhost",
-    "mnazi-moja.tz.meta3.clinicedc.org",
-    "mbagala.tz.meta3.clinicedc.org",
-    "mwananyamala.tz.meta3.clinicedc.org",
-    "hindu-mandal.tz.meta3.clinicedc.org",
-    "temeke.tz.meta3.clinicedc.org",
-    "amana.tz.meta3.clinicedc.org",
+    "mnazi-moja.tz.meta4.clinicedc.org",
+    "mbagala.tz.meta4.clinicedc.org",
+    "mwananyamala.tz.meta4.clinicedc.org",
+    "hindu-mandal.tz.meta4.clinicedc.org",
+    "temeke.tz.meta4.clinicedc.org",
+    "amana.tz.meta4.clinicedc.org",
 ]
 
 SECURE_SSL_REDIRECT = False
@@ -32,3 +32,11 @@ EDC_MODEL_ADMIN_CSS_THEME = "edc_purple"
 if os.path.exists(BASE_DIR) and not os.path.exists(KEY_PATH):  # noqa
     os.makedirs(KEY_PATH)  # noqa
     AUTO_CREATE_KEYS = True
+
+# if debugging, run `export DJANGO_DEBUG=True` before running runserver
+# CELERY_TASK_ALWAYS_EAGER = os.getenv("DJANGO_DEBUG", "False") == "True"
+# CELERY_TASK_EAGER_PROPAGATES = CELERY_TASK_ALWAYS_EAGER
+
+EDC_PDF_REPORTS_WATERMARK_WORD = "SAMPLE"
+EDC_PDF_REPORTS_WATERMARK_FONT = ("Helvetica", 100)
+EDC_PHARMACY_LABEL_WATERMARK_WORD = "DO NOT USE"