meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py

@@ -0,0 +1,80 @@
+# Generated by Django 4.2.11 on 2024-05-16 20:08
+
+from django.db import migrations, models
+import edc_crf.model_mixins.crf_status_model_mixin
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0204_glucosefbg_repeat_fbg_date_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="historicalsubjectrequisition",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalsubjectrequisition",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+        migrations.AddField(
+            model_name="subjectrequisition",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="subjectrequisition",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmdxresult",
+            name="utestid",
+            field=models.CharField(
+                choices=[("fbg", "FBG mmol/L"), ("ogtt", "OGTT mmol/L"), ("hba1c", "HbA1c %")],
+                max_length=15,
+                verbose_name="Test",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicaldmdxresult",
+            name="utestid",
+            field=models.CharField(
+                choices=[("fbg", "FBG mmol/L"), ("ogtt", "OGTT mmol/L"), ("hba1c", "HbA1c %")],
+                max_length=15,
+                verbose_name="Test",
+            ),
+        ),
+    ]

meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py

@@ -0,0 +1,62 @@
+# Generated by Django 4.2.11 on 2024-05-17 14:31
+
+from django.db import migrations, models
+import edc_crf.model_mixins.crf_status_model_mixin
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0205_historicalsubjectrequisition_crf_status_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="bloodresultsfbc",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="bloodresultsfbc",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalbloodresultsfbc",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalbloodresultsfbc",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+    ]

meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py

@@ -0,0 +1,46 @@
+# Generated by Django 4.2.11 on 2024-06-10 19:09
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0206_bloodresultsfbc_crf_status_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalphysicalexam",
+            name="waist_circumference",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=1,
+                help_text="in centimeters",
+                max_digits=5,
+                null=True,
+                validators=[
+                    django.core.validators.MinValueValidator(50.0),
+                    django.core.validators.MaxValueValidator(175.0),
+                ],
+                verbose_name="Waist circumference",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="physicalexam",
+            name="waist_circumference",
+            field=models.DecimalField(
+                blank=True,
+                decimal_places=1,
+                help_text="in centimeters",
+                max_digits=5,
+                null=True,
+                validators=[
+                    django.core.validators.MinValueValidator(50.0),
+                    django.core.validators.MaxValueValidator(175.0),
+                ],
+                verbose_name="Waist circumference",
+            ),
+        ),
+    ]

meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py

@@ -0,0 +1,62 @@
+# Generated by Django 4.2.11 on 2024-08-01 16:48
+
+from django.db import migrations, models
+import edc_crf.model_mixins.crf_status_model_mixin
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0207_alter_historicalphysicalexam_waist_circumference_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="birthoutcomes",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="birthoutcomes",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalbirthoutcomes",
+            name="crf_status",
+            field=models.CharField(
+                choices=[
+                    ("INCOMPLETE", "Incomplete (some data pending)"),
+                    ("COMPLETE", "Complete"),
+                ],
+                default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                help_text="If some data is still pending, flag this CRF as incomplete",
+                max_length=25,
+                verbose_name="CRF status",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicalbirthoutcomes",
+            name="crf_status_comments",
+            field=models.TextField(
+                blank=True,
+                help_text="for example, why some data is still pending",
+                null=True,
+                verbose_name="Any comments related to status of this CRF",
+            ),
+        ),
+    ]

meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py

@@ -0,0 +1,37 @@
+# Generated by Django 5.0.8 on 2024-08-21 13:45
+
+import uuid
+
+import _socket
+import django.db.models.deletion
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django_audit_fields.models.audit_model_mixin
+import django_revision.revision_field
+import edc_crf.model_mixins.crf_status_model_mixin
+import edc_model.validators.date
+import edc_model_fields.fields.other_charfield
+import edc_protocol.validators
+import edc_utils.date
+import edc_visit_tracking.managers
+import simple_history.models
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0208_birthoutcomes_crf_status_and_more"),
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name="historicaldmdiagnosis",
+            new_name="historicaldmendpoint",
+        ),
+        migrations.RenameModel(old_name="dmdiagnosis", new_name="dmendpoint"),
+    ]

meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py

@@ -0,0 +1,123 @@
+# Generated by Django 5.0.8 on 2024-08-21 13:48
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0209_remove_historicaldmdxresult_dm_diagnosis_and_more"),
+    ]
+
+    operations = [
+        migrations.RemoveField(
+            model_name="dmdxresult",
+            name="dm_diagnosis",
+        ),
+        migrations.RemoveField(
+            model_name="dmdxresult",
+            name="site",
+        ),
+        migrations.RemoveField(
+            model_name="historicaldmdxresult",
+            name="dm_diagnosis",
+        ),
+        migrations.RemoveField(
+            model_name="historicaldmdxresult",
+            name="history_user",
+        ),
+        migrations.RemoveField(
+            model_name="historicaldmdxresult",
+            name="site",
+        ),
+        migrations.AlterModelOptions(
+            name="dmendpoint",
+            options={
+                "default_manager_name": "objects",
+                "default_permissions": ("add", "change", "delete", "view", "export", "import"),
+                "verbose_name": "Diabetes endpoint",
+                "verbose_name_plural": "Diabetes endpoint",
+            },
+        ),
+        migrations.AlterModelOptions(
+            name="historicaldmendpoint",
+            options={
+                "get_latest_by": ("history_date", "history_id"),
+                "ordering": ("-history_date", "-history_id"),
+                "verbose_name": "historical Diabetes endpoint",
+                "verbose_name_plural": "historical Diabetes endpoint",
+            },
+        ),
+        migrations.RenameIndex(
+            model_name="dmendpoint",
+            new_name="meta_subjec_subject_03eaba_idx",
+            old_name="meta_subjec_subject_40b1c1_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="dmendpoint",
+            new_name="meta_subjec_subject_605359_idx",
+            old_name="meta_subjec_subject_2059c2_idx",
+        ),
+        migrations.AlterField(
+            model_name="dmendpoint",
+            name="dx_date",
+            field=models.DateField(verbose_name="Date endpoint reached"),
+        ),
+        migrations.AlterField(
+            model_name="dmendpoint",
+            name="dx_initiated_by",
+            field=models.CharField(
+                default="QUESTION_RETIRED",
+                max_length=25,
+                verbose_name="What initiated the diagnosis",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmendpoint",
+            name="dx_tmg",
+            field=models.CharField(
+                choices=[
+                    ("Yes", "Yes"),
+                    ("No", "No"),
+                    ("QUESTION_RETIRED", "Question retired"),
+                ],
+                default="QUESTION_RETIRED",
+                max_length=25,
+                verbose_name="Was this case discussed with the TMG?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicaldmendpoint",
+            name="dx_date",
+            field=models.DateField(verbose_name="Date endpoint reached"),
+        ),
+        migrations.AlterField(
+            model_name="historicaldmendpoint",
+            name="dx_initiated_by",
+            field=models.CharField(
+                default="QUESTION_RETIRED",
+                max_length=25,
+                verbose_name="What initiated the diagnosis",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicaldmendpoint",
+            name="dx_tmg",
+            field=models.CharField(
+                choices=[
+                    ("Yes", "Yes"),
+                    ("No", "No"),
+                    ("QUESTION_RETIRED", "Question retired"),
+                ],
+                default="QUESTION_RETIRED",
+                max_length=25,
+                verbose_name="Was this case discussed with the TMG?",
+            ),
+        ),
+        migrations.DeleteModel(
+            name="DmDxResult",
+        ),
+        migrations.DeleteModel(
+            name="HistoricalDmDxResult",
+        ),
+    ]

meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py

@@ -0,0 +1,45 @@
+# Generated by Django 5.0.8 on 2024-08-21 23:56
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0210_remove_dmdxresult_dm_diagnosis_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="dmendpoint",
+            name="endpoint_reached",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                help_text="If YES, the EDC will check for the patient on the Endpoints report.",
+                max_length=15,
+                null=True,
+                verbose_name="Was the patient referred because the diabetes endpoint was reached?",
+            ),
+        ),
+        migrations.AddField(
+            model_name="historicaldmendpoint",
+            name="endpoint_reached",
+            field=models.CharField(
+                choices=[("Yes", "Yes"), ("No", "No")],
+                help_text="If YES, the EDC will check for the patient on the Endpoints report.",
+                max_length=15,
+                null=True,
+                verbose_name="Was the patient referred because the diabetes endpoint was reached?",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmendpoint",
+            name="dx_date",
+            field=models.DateField(null=True, verbose_name="Date endpoint reached"),
+        ),
+        migrations.AlterField(
+            model_name="historicaldmendpoint",
+            name="dx_date",
+            field=models.DateField(null=True, verbose_name="Date endpoint reached"),
+        ),
+    ]

meta_subject/migrations/0212_auto_20240827_2222.py

@@ -0,0 +1,23 @@
+# Generated by Django 5.0.8 on 2024-08-27 19:22
+
+from django.db import migrations
+from django.db.migrations import RunPython
+from edc_constants.constants import NO, YES
+
+
+def update_old_fasting_choices(apps, schema_editor):
+    result = {"fasting": 0, "non_fasting": 0}
+    model_cls = apps.get_model("meta_subject.glucosefbg")
+    result["fasting"] = model_cls.objects.filter(fasting="fasting").update(fasting=YES)
+    result["non_fasting"] = model_cls.objects.filter(fasting="non_fasting").update(fasting=NO)
+    print(f"Updated: results are {result}")
+    print("Done.")
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0211_dmendpoint_endpoint_reached_and_more"),
+    ]
+
+    operations = [RunPython(update_old_fasting_choices)]

meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py

@@ -0,0 +1,35 @@
+# Generated by Django 5.0.8 on 2024-08-28 19:54
+
+from django.conf import settings
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
+        ("meta_subject", "0212_auto_20240827_2222"),
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name="BloodResultsLipid",
+            new_name="BloodResultsLipids",
+        ),
+        migrations.RenameModel(
+            old_name="HistoricalBloodResultsLipid",
+            new_name="HistoricalBloodResultsLipids",
+        ),
+        migrations.RenameIndex(
+            model_name="bloodresultslipids",
+            new_name="meta_subjec_subject_eff3e6_idx",
+            old_name="meta_subjec_subject_296de9_idx",
+        ),
+        migrations.RenameIndex(
+            model_name="bloodresultslipids",
+            new_name="meta_subjec_subject_49b971_idx",
+            old_name="meta_subjec_subject_9692a2_idx",
+        ),
+    ]

meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py

@@ -0,0 +1,44 @@
+# Generated by Django 5.1.2 on 2024-11-18 02:18
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0213_rename_bloodresultslipid_bloodresultslipids_and_more"),
+    ]
+
+    operations = [
+        migrations.AddField(
+            model_name="historicalstudymedication",
+            name="stock_codes",
+            field=models.CharField(
+                blank=True,
+                help_text="Enter the medication bottle barcode or bacodes seperated by comma, no spaces",
+                max_length=30,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        regex="^([a-zA-Z0-9]{6})(,[a-zA-Z0-9]{6})*$"
+                    )
+                ],
+            ),
+        ),
+        migrations.AddField(
+            model_name="studymedication",
+            name="stock_codes",
+            field=models.CharField(
+                blank=True,
+                help_text="Enter the medication bottle barcode or bacodes seperated by comma, no spaces",
+                max_length=30,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        regex="^([a-zA-Z0-9]{6})(,[a-zA-Z0-9]{6})*$"
+                    )
+                ],
+            ),
+        ),
+    ]

meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py

@@ -0,0 +1,46 @@
+# Generated by Django 5.1.2 on 2024-11-18 02:34
+
+import django.core.validators
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_subject", "0214_historicalstudymedication_stock_codes_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalstudymedication",
+            name="stock_codes",
+            field=models.CharField(
+                blank=True,
+                help_text="Enter the medication bottle barcode or barcodes seperated by comma, no spaces",
+                max_length=30,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Enter one or more valid codes separated by comma",
+                        regex="^([A-Z0-9]{6})(,[A-Z0-9]{6})*$",
+                    )
+                ],
+            ),
+        ),
+        migrations.AlterField(
+            model_name="studymedication",
+            name="stock_codes",
+            field=models.CharField(
+                blank=True,
+                help_text="Enter the medication bottle barcode or barcodes seperated by comma, no spaces",
+                max_length=30,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Enter one or more valid codes separated by comma",
+                        regex="^([A-Z0-9]{6})(,[A-Z0-9]{6})*$",
+                    )
+                ],
+            ),
+        ),
+    ]

meta_subject/model_mixins/arv_history_model_mixin.py

@@ -44,7 +44,7 @@ class ArvHistoryModelMixin(models.Model):
         ArvRegimens,
         on_delete=models.PROTECT,
         related_name="current_arv_regimen",
-        verbose_name=("Which antiretroviral therapy regimen is the patient currently on?"),
+        verbose_name="Which antiretroviral therapy regimen is the patient currently on?",
         null=True,
         blank=False,
     )
@@ -69,7 +69,7 @@ class ArvHistoryModelMixin(models.Model):
         ArvRegimens,
         on_delete=models.PROTECT,
         related_name="previous_arv_regimen",
-        verbose_name=("Which antiretroviral therapy regimen was the patient previously on?"),
+        verbose_name="Which antiretroviral therapy regimen was the patient previously on?",
         null=True,
         blank=True,
     )
@@ -77,7 +77,7 @@ class ArvHistoryModelMixin(models.Model):
     other_previous_arv_regimen = OtherCharField(null=True, blank=True)
 
     on_oi_prophylaxis = models.CharField(
-        verbose_name=("Is the patient on any prophylaxis against opportunistic infections?"),
+        verbose_name="Is the patient on any prophylaxis against opportunistic infections?",
         max_length=15,
         choices=YES_NO,
     )

meta_subject/models/__init__.py

@@ -4,15 +4,15 @@ from .blood_results import (
     BloodResultsHba1c,
     BloodResultsIns,
     BloodResultsLft,
-    BloodResultsLipid,
+    BloodResultsLipids,
     BloodResultsRft,
 )
 from .complications import Complications
 from .complications_glycemia import ComplicationsGlycemia
 from .concomitant_medication import ConcomitantMedication
 from .delivery import Delivery
+from .diabetes import DmEndpoint, DmFollowup
 from .diet_and_lifestyle import DietAndLifestyle
-from .dm_referral_followup import DmReferralFollowup
 from .egfr_drop_notification import EgfrDropNotification
 from .eq5d3l import Eq5d3l
 from .followup_examination import FollowupExamination
@@ -36,6 +36,7 @@ from .pregnancy_update import PregnancyUpdate
 from .sf12 import Sf12
 from .signals import (
     study_medication_on_pre_save,
+    update_glucose_endpoints_for_subject_on_post_save,
     update_pregnancy_notification_on_delivery_post_save,
     update_schedule_on_delivery_post_save,
 )