meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

meta_auth/auths.py

@@ -20,13 +20,26 @@ from edc_pharmacy.auth_objects import (
     PHARMACY_PRESCRIBER,
     SITE_PHARMACIST_ROLE,
 )
+from edc_qareports.auth_objects import QA_REPORTS_AUDIT_ROLE, QA_REPORTS_ROLE
 from edc_qol.auth_objects import QOL, QOL_SUPER, QOL_VIEW
 from edc_randomization.auth_objects import RANDO_BLINDED, RANDO_UNBLINDED
 from edc_screening.auth_objects import SCREENING, SCREENING_SUPER, SCREENING_VIEW
 from edc_subject_dashboard.auths import SUBJECT_VIEW
 from edc_unblinding.auth_objects import UNBLINDING_REQUESTORS
 
-from .auth_objects import clinic_codenames, screening_codenames
+from .auth_objects import (
+    META_PHARMACIST,
+    META_REPORTS,
+    META_REPORTS_AUDIT,
+    clinic_codenames,
+    meta_pharmacy_codenames,
+    reports_codenames,
+    screening_codenames,
+)
+
+site_auths.add_group(*reports_codenames, name=META_REPORTS)
+site_auths.add_group(*reports_codenames, name=META_REPORTS_AUDIT, view_only=True)
+site_auths.add_group(*meta_pharmacy_codenames, name=META_PHARMACIST)
 
 # update edc_auth default groups
 site_auths.update_group(*clinic_codenames, name=AUDITOR, view_only=True)
@@ -59,9 +72,11 @@ site_auths.update_role(
     DATA_MANAGER_EXPORT,
     name=DATA_EXPORTER_ROLE,
 )
-site_auths.update_role(RANDO_UNBLINDED, PII, name=PHARMACIST_ROLE)
-site_auths.update_role(RANDO_BLINDED, PII, name=SITE_PHARMACIST_ROLE)
+site_auths.update_role(RANDO_UNBLINDED, PII, META_PHARMACIST, name=PHARMACIST_ROLE)
+site_auths.update_role(RANDO_BLINDED, PII, META_PHARMACIST, name=SITE_PHARMACIST_ROLE)
 site_auths.update_role(SUBJECT_VIEW, SCREENING_VIEW, name=DATA_MANAGER_ROLE)
 site_auths.update_role(
     SUBJECT_VIEW, SCREENING_VIEW, ACTION_ITEM, UNBLINDING_REQUESTORS, name=TMG_ROLE
 )
+site_auths.update_role(META_REPORTS, name=QA_REPORTS_ROLE)
+site_auths.update_role(META_REPORTS_AUDIT, name=QA_REPORTS_AUDIT_ROLE)

meta_consent/action_items.py

@@ -1,7 +1,7 @@
 from edc_action_item import Action, site_action_items
 from edc_constants.constants import HIGH_PRIORITY
 
-from .constants import RECONSENT_ACTION
+from .constants import CONSENT_V1_EXTENSION_ACTION, RECONSENT_ACTION
 
 
 class ReconsentAction(Action):
@@ -23,4 +23,21 @@ class ReconsentAction(Action):
         return False
 
 
+class ConsentV1ExtensionAction(Action):
+    name = CONSENT_V1_EXTENSION_ACTION
+    display_name = "Ask to extend followup (required)"
+    reference_model = "meta_consent.subjectconsentv1ext"
+    priority = HIGH_PRIORITY
+    show_on_dashboard = True
+    show_link_to_changelist = True
+    admin_site_name = "meta_consent_admin"
+    create_by_user = False
+    singleton = True
+    instructions = "Participant must complete as soon as able. "
+
+    def reopen_action_item_on_change(self):
+        return False
+
+
 site_action_items.register(ReconsentAction)
+site_action_items.register(ConsentV1ExtensionAction)

meta_consent/admin/__init__.py

@@ -1,2 +1,3 @@
 from .subject_consent_admin import SubjectConsentAdmin
 from .subject_consent_v1_admin import SubjectConsentV1Admin
+from .subject_consent_v1_ext_admin import SubjectConsentV1ExtAdmin

meta_consent/admin/subject_consent_v1_ext_admin.py

@@ -0,0 +1,45 @@
+from django.contrib import admin
+from django_audit_fields import audit_fieldset_tuple
+from edc_model_admin.dashboard import ModelAdminSubjectDashboardMixin
+from edc_model_admin.history import SimpleHistoryAdmin
+
+from ..admin_site import meta_consent_admin
+from ..forms import SubjectConsentV1ExtForm
+from ..models import SubjectConsentV1Ext
+
+
+@admin.register(SubjectConsentV1Ext, site=meta_consent_admin)
+class SubjectConsentV1ExtAdmin(
+    ModelAdminSubjectDashboardMixin,
+    SimpleHistoryAdmin,
+):
+    form = SubjectConsentV1ExtForm
+
+    fieldsets = (
+        (
+            None,
+            {
+                "fields": (
+                    "subject_consent",
+                    "report_datetime",
+                    "agrees_to_extension",
+                )
+            },
+        ),
+        audit_fieldset_tuple,
+    )
+
+    radio_fields = {"agrees_to_extension": admin.VERTICAL}
+
+    def get_readonly_fields(self, request, obj=None) -> tuple[str, ...]:
+        if obj:
+            return ("subject_consent",)
+        return ()
+
+    def formfield_for_foreignkey(self, db_field, request, **kwargs):
+        if db_field.name == "subject_consent":
+            subject_identifier = request.GET.get("subject_identifier")
+            kwargs["queryset"] = db_field.related_model.objects.filter(
+                subject_identifier=subject_identifier
+            )
+        return super().formfield_for_foreignkey(db_field, request, **kwargs)

meta_consent/baker_recipes.py

@@ -5,13 +5,11 @@ from edc_utils import get_utcnow
 from faker import Faker
 from model_bakery.recipe import Recipe, seq
 
-from .models import SubjectConsent, SubjectReconsent
+from .models import SubjectConsent, SubjectConsentV1, SubjectReconsent
 
 fake = Faker()
 
-
-subjectconsent = Recipe(
-    SubjectConsent,
+opts = dict(
     assessment_score=YES,
     confirm_identity=seq("12315678"),
     consent_copy=YES,
@@ -35,6 +33,9 @@ subjectconsent = Recipe(
     user_created="erikvw",
     user_modified="erikvw",
 )
+subjectconsent = Recipe(SubjectConsent, **opts)
+subjectconsentv1 = Recipe(SubjectConsentV1, **opts)
+# subjectconsentv1ext = Recipe(SubjectConsentV1Ext, **opts)
 
 subjectreconsent = Recipe(
     SubjectReconsent,

meta_consent/consents.py

@@ -1,10 +1,14 @@
+from datetime import datetime
+from zoneinfo import ZoneInfo
+
 from edc_consent.consent_definition import ConsentDefinition
+from edc_consent.consent_definition_extension import ConsentDefinitionExtension
 from edc_consent.site_consents import site_consents
 from edc_constants.constants import FEMALE, MALE
 from edc_protocol.research_protocol_config import ResearchProtocolConfig
 
 consent_v1 = ConsentDefinition(
-    model="meta_consent.subjectconsentv1",
+    "meta_consent.subjectconsentv1",
     version="1",
     start=ResearchProtocolConfig().study_open_datetime,
     end=ResearchProtocolConfig().study_close_datetime,
@@ -12,6 +16,21 @@ consent_v1 = ConsentDefinition(
     age_is_adult=18,
     age_max=110,
     gender=[MALE, FEMALE],
+    screening_model=[
+        "meta_screening.subjectscreening",
+        "meta_screening.screeningpartone",
+        "meta_screening.screeningparttwo",
+        "meta_screening.screeningpartthree",
+    ],
+    timepoints=list(range(1, 14 + 1)),
+)
+
+consent_v1_ext = ConsentDefinitionExtension(
+    "meta_consent.subjectconsentv1ext",
+    version="1.1",
+    start=datetime(2024, 12, 16, tzinfo=ZoneInfo("UTC")),
+    extends=consent_v1,
+    timepoints=[15, 16, 17, 18],
 )
 
-site_consents.register(consent_v1)
+site_consents.register(consent_v1, extended_by=consent_v1_ext)

meta_consent/constants.py

@@ -1 +1,2 @@
 RECONSENT_ACTION = "reconsent"
+CONSENT_V1_EXTENSION_ACTION = "consent_v1_ext"

meta_consent/forms/__init__.py

@@ -1,3 +1,4 @@
 from .subject_consent_form import SubjectConsentForm
+from .subject_consent_v1_ext_form import SubjectConsentV1ExtForm
 from .subject_consent_v1_form import SubjectConsentV1Form
 from .subject_reconsent_form import SubjectReconsentForm

meta_consent/forms/subject_consent_v1_ext_form.py

@@ -0,0 +1,16 @@
+from django import forms
+from edc_form_validators import FormValidatorMixin
+from edc_sites.forms import SiteModelFormMixin
+
+from ..models import SubjectConsentV1Ext
+
+
+class SubjectConsentV1ExtForm(SiteModelFormMixin, FormValidatorMixin, forms.ModelForm):
+
+    widgets = {
+        "subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
+    }
+
+    class Meta:
+        model = SubjectConsentV1Ext
+        fields = "__all__"

meta_consent/locale/lg/LC_MESSAGES/django.po

@@ -0,0 +1,69 @@
+# SOME DESCRIPTIVE TITLE.
+# Copyright (C) YEAR THE PACKAGE'S COPYRIGHT HOLDER
+# This file is distributed under the same license as the PACKAGE package.
+# FIRST AUTHOR <EMAIL@ADDRESS>, YEAR.
+#
+#, fuzzy
+msgid ""
+msgstr ""
+"Project-Id-Version: PACKAGE VERSION\n"
+"Report-Msgid-Bugs-To: \n"
+"POT-Creation-Date: 2024-11-19 23:35+0300\n"
+"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
+"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
+"Language-Team: LANGUAGE <LL@li.org>\n"
+"Language: \n"
+"MIME-Version: 1.0\n"
+"Content-Type: text/plain; charset=UTF-8\n"
+"Content-Transfer-Encoding: 8bit\n"
+
+#: meta_consent/admin/modeladmin_mixins.py:68
+msgid "The following questions are directed to the interviewer."
+msgstr ""
+
+#: meta_consent/admin/modeladmin_mixins.py:118
+msgid "Create missing METFORMIN prescription"
+msgstr ""
+
+#: meta_consent/admin/modeladmin_mixins.py:140
+#, python-format
+msgid ""
+"Created %(created)s/%(total)s missing %(display_name)s prescriptions. Got "
+"%(exist)s/%(total)s prescriptions already exist"
+msgstr ""
+
+#: meta_consent/form_validators/subject_consent_form_validator.py:14
+msgid "Expected 'hospital number'."
+msgstr ""
+
+#: meta_consent/form_validators/subject_consent_form_validator.py:22
+msgid "The hospital identifier does not match that reported at screening."
+msgstr ""
+
+#: meta_consent/forms/subject_consent_form.py:13
+msgid ""
+"Use Country ID Number, Passport number, driver's license number or Country "
+"ID receipt number"
+msgstr ""
+
+#: meta_consent/forms/subject_consent_form.py:19
+msgid ""
+"Required only if participant is illiterate. Format is 'LASTNAME, FIRSTNAME'. "
+"All uppercase separated by a comma."
+msgstr ""
+
+#: meta_consent/forms/subject_consent_form.py:24
+msgid "(read-only)"
+msgstr ""
+
+#: meta_consent/models/subject_consent.py:54
+msgid "Screening identifier"
+msgstr ""
+
+#: meta_consent/models/subject_consent.py:58
+msgid "Screening datetime"
+msgstr ""
+
+#: meta_consent/models/subject_consent.py:63
+msgid "from screening"
+msgstr ""

meta_consent/locale/sw/LC_MESSAGES/django.po

@@ -8,7 +8,7 @@ msgid ""
 msgstr ""
 "Project-Id-Version: PACKAGE VERSION\n"
 "Report-Msgid-Bugs-To: \n"
-"POT-Creation-Date: 2023-09-07 09:43-0500\n"
+"POT-Creation-Date: 2024-11-19 23:35+0300\n"
 "PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
 "Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
 "Language-Team: LANGUAGE <LL@li.org>\n"
@@ -18,53 +18,53 @@ msgstr ""
 "Content-Transfer-Encoding: 8bit\n"
 "Plural-Forms: nplurals=2; plural=(n != 1);\n"
 
-#: admin/subject_consent_admin.py:74
+#: meta_consent/admin/modeladmin_mixins.py:68
 msgid "The following questions are directed to the interviewer."
 msgstr ""
 
-#: admin/subject_consent_admin.py:124
+#: meta_consent/admin/modeladmin_mixins.py:118
 msgid "Create missing METFORMIN prescription"
 msgstr ""
 
-#: admin/subject_consent_admin.py:146
+#: meta_consent/admin/modeladmin_mixins.py:140
 #, python-format
 msgid ""
 "Created %(created)s/%(total)s missing %(display_name)s prescriptions. Got "
 "%(exist)s/%(total)s prescriptions already exist"
 msgstr ""
 
-#: forms/subject_consent_form.py:18
+#: meta_consent/form_validators/subject_consent_form_validator.py:14
 msgid "Expected 'hospital number'."
 msgstr ""
 
-#: forms/subject_consent_form.py:26
+#: meta_consent/form_validators/subject_consent_form_validator.py:22
 msgid "The hospital identifier does not match that reported at screening."
 msgstr ""
 
-#: forms/subject_consent_form.py:54
+#: meta_consent/forms/subject_consent_form.py:13
 msgid ""
 "Use Country ID Number, Passport number, driver's license number or Country "
 "ID receipt number"
 msgstr ""
 
-#: forms/subject_consent_form.py:60
+#: meta_consent/forms/subject_consent_form.py:19
 msgid ""
 "Required only if participant is illiterate. Format is 'LASTNAME, FIRSTNAME'. "
 "All uppercase separated by a comma."
 msgstr ""
 
-#: forms/subject_consent_form.py:65
+#: meta_consent/forms/subject_consent_form.py:24
 msgid "(read-only)"
 msgstr ""
 
-#: models/subject_consent.py:63
+#: meta_consent/models/subject_consent.py:54
 msgid "Screening identifier"
 msgstr ""
 
-#: models/subject_consent.py:67
+#: meta_consent/models/subject_consent.py:58
 msgid "Screening datetime"
 msgstr ""
 
-#: models/subject_consent.py:72
+#: meta_consent/models/subject_consent.py:63
 msgid "from screening"
 msgstr ""

meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py

@@ -0,0 +1,151 @@
+# Generated by Django 4.2.11 on 2024-03-27 19:41
+
+import django.core.validators
+from django.db import migrations
+import django_crypto_fields.fields.encrypted_char_field
+import edc_consent.validators
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_consent", "0024_historicalsubjectconsentv1"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalsubjectconsent",
+            name="first_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectconsent",
+            name="guardian_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Required only if participant is a minor.<BR>Format is 'LASTNAME, FIRSTNAME'. All uppercase separated by a comma. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[edc_consent.validators.FullNameValidator()],
+                verbose_name="Guardian's last and first name",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectconsent",
+            name="last_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+                verbose_name="Surname",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectconsentv1",
+            name="first_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectconsentv1",
+            name="guardian_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Required only if participant is a minor.<BR>Format is 'LASTNAME, FIRSTNAME'. All uppercase separated by a comma. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[edc_consent.validators.FullNameValidator()],
+                verbose_name="Guardian's last and first name",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubjectconsentv1",
+            name="last_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+                verbose_name="Surname",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectconsent",
+            name="first_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectconsent",
+            name="guardian_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Required only if participant is a minor.<BR>Format is 'LASTNAME, FIRSTNAME'. All uppercase separated by a comma. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[edc_consent.validators.FullNameValidator()],
+                verbose_name="Guardian's last and first name",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectconsent",
+            name="last_name",
+            field=django_crypto_fields.fields.encrypted_char_field.EncryptedCharField(
+                blank=True,
+                help_text="Use UPPERCASE letters only. (Encryption: RSA local)",
+                max_length=71,
+                null=True,
+                validators=[
+                    django.core.validators.RegexValidator(
+                        message="Ensure name consist of letters only in upper case",
+                        regex="^([A-Z]+$|[A-Z]+\\ [A-Z]+)$",
+                    )
+                ],
+                verbose_name="Surname",
+            ),
+        ),
+    ]