meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl
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- meta_ae/action_items.py +2 -2
- meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
- meta_ae/tests/holidays.csv +1 -1
- meta_analytics/README.rst +17 -0
- meta_analytics/dataframes/__init__.py +19 -0
- meta_analytics/dataframes/constants.py +33 -0
- meta_analytics/dataframes/enrolled/__init__.py +1 -0
- meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
- meta_analytics/dataframes/get_eos_df.py +26 -0
- meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
- meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
- meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
- meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
- meta_analytics/dataframes/screening/__init__.py +2 -0
- meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
- meta_analytics/dataframes/screening/get_screening_df.py +163 -0
- meta_analytics/dataframes/utils.py +65 -0
- meta_analytics/get_tables.py +81 -0
- meta_analytics/tables/__init__.py +2 -0
- meta_analytics/tables/eligible.py +106 -0
- meta_analytics/tables/enrolled/__init__.py +0 -0
- meta_analytics/tables/enrolled/glucose.py +28 -0
- meta_analytics/tables/has_dm.py +61 -0
- meta_analytics/tests/__init__.py +0 -0
- meta_analytics/tests/test_endpoints_by_date.py +94 -0
- meta_auth/auth_objects.py +32 -3
- meta_auth/auths.py +18 -3
- meta_consent/action_items.py +18 -1
- meta_consent/admin/__init__.py +1 -0
- meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
- meta_consent/baker_recipes.py +5 -4
- meta_consent/consents.py +21 -2
- meta_consent/constants.py +1 -0
- meta_consent/forms/__init__.py +1 -0
- meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
- meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
- meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
- meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
- meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
- meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
- meta_consent/models/__init__.py +1 -0
- meta_consent/models/signals.py +34 -13
- meta_consent/models/subject_consent_v1.py +1 -3
- meta_consent/models/subject_consent_v1_ext.py +29 -0
- meta_consent/tests/holidays.csv +1 -1
- meta_consent/tests/tests/test_form_validators.py +1 -1
- meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
- meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
- meta_dashboard/navbars.py +3 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html +4 -4
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html +1 -2
- meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
- meta_dashboard/tests/holidays.csv +1 -1
- meta_dashboard/tests/urls.py +0 -1
- meta_dashboard/view_utils/__init__.py +6 -0
- meta_dashboard/view_utils/subject_screening_button.py +2 -2
- meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
- meta_edc/__init__.py +7 -0
- meta_edc/celery.py +4 -13
- meta_edc/celery_live.py +18 -0
- meta_edc/celery_uat.py +24 -0
- meta_edc/management/commands/update_forms_reference.py +6 -2
- meta_edc/migrations/__init__.py +0 -0
- meta_edc/navbars.py +2 -1
- meta_edc/settings/debug.py +17 -9
- meta_edc/settings/defaults.py +82 -60
- meta_edc/settings/live.py +1 -9
- meta_edc/settings/uat.py +1 -14
- meta_edc/templates/meta_edc/bootstrap3/home.html +13 -7
- meta_edc/tests/tests/test_endpoints.py +22 -19
- meta_edc/urls.py +5 -2
- meta_edc/wsgi.py +1 -1
- meta_edc/wsgi_live.py +1 -1
- meta_edc/wsgi_uat.py +1 -1
- meta_edc-0.3.50.dist-info/AUTHORS +0 -0
- meta_edc-0.3.50.dist-info/METADATA +766 -0
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/RECORD +400 -157
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
- meta_pharmacy/admin/__init__.py +2 -0
- meta_pharmacy/admin/rx_admin.py +75 -0
- meta_pharmacy/admin/substitutions_admin.py +67 -0
- meta_pharmacy/admin_site.py +9 -0
- meta_pharmacy/apps.py +5 -0
- meta_pharmacy/constants.py +10 -0
- meta_pharmacy/forms/__init__.py +2 -0
- meta_pharmacy/forms/rx_form.py +16 -0
- meta_pharmacy/forms/substitutions_form.py +54 -0
- meta_pharmacy/label_configs.py +30 -0
- meta_pharmacy/labels/__init__.py +5 -0
- meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
- meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
- meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
- meta_pharmacy/labels/label_data.py +14 -0
- meta_pharmacy/labels/print_sheets.py +97 -0
- meta_pharmacy/list_data.py +8 -0
- meta_pharmacy/management/__init__.py +0 -0
- meta_pharmacy/management/commands/__init__.py +0 -0
- meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
- meta_pharmacy/migrations/0002_initial.py +695 -0
- meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
- meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
- meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
- meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
- meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
- meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
- meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
- meta_pharmacy/models/__init__.py +3 -0
- meta_pharmacy/models/label_data.py +38 -0
- meta_pharmacy/models/rx.py +18 -0
- meta_pharmacy/models/rx_label.py +39 -0
- meta_pharmacy/models/substitutions.py +88 -0
- meta_pharmacy/urls.py +8 -0
- meta_pharmacy/utils/__init__.py +1 -0
- meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
- meta_prn/action_items.py +52 -2
- meta_prn/admin/__init__.py +3 -0
- meta_prn/admin/dm_referral_admin.py +49 -0
- meta_prn/admin/offschedule_dm_referral_admin.py +47 -0
- meta_prn/admin/onschedule_dm_referral_admin.py +39 -0
- meta_prn/admin/pregnancy_notification_admin.py +6 -2
- meta_prn/baker_recipes.py +8 -1
- meta_prn/choices.py +2 -1
- meta_prn/constants.py +4 -1
- meta_prn/forms/__init__.py +2 -0
- meta_prn/forms/dm_referral_form.py +40 -0
- meta_prn/forms/offschedule_dm_referral_form.py +35 -0
- meta_prn/forms/offschedule_form.py +6 -0
- meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
- meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
- meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +1156 -0
- meta_prn/migrations/0058_dmreferral_referral_note_and_more.py +29 -0
- meta_prn/migrations/0059_alter_historicaloffstudymedication_reason_and_more.py +53 -0
- meta_prn/models/__init__.py +13 -2
- meta_prn/models/dm_referral.py +39 -0
- meta_prn/models/offschedule.py +15 -1
- meta_prn/models/onschedule.py +6 -0
- meta_prn/models/signals.py +41 -1
- meta_prn/tests/tests/test_dm_referral.py +203 -0
- meta_reports/__init__.py +1 -0
- meta_reports/admin/__init__.py +15 -0
- meta_reports/admin/dbviews/__init__.py +14 -0
- meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
- meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
- meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
- meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
- meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
- meta_reports/admin/endpoints_admin.py +14 -0
- meta_reports/admin/endpoints_all_admin.py +13 -0
- meta_reports/admin/last_imp_refill_admin.py +181 -0
- meta_reports/admin/list_filters.py +30 -0
- meta_reports/admin/modeladmin_mixins.py +112 -0
- meta_reports/admin_site.py +5 -0
- meta_reports/apps.py +1 -16
- meta_reports/forms/__init__.py +1 -0
- meta_reports/forms/missing_ogtt_note_form.py +33 -0
- meta_reports/management/__init__.py +0 -0
- meta_reports/management/commands/__init__.py +0 -0
- meta_reports/management/commands/generate_endpoints.py +13 -0
- meta_reports/migrations/0001_initial.py +87 -0
- meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
- meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
- meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
- meta_reports/migrations/0005_endpoints.py +47 -0
- meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
- meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
- meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
- meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
- meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
- meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
- meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
- meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
- meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
- meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
- meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
- meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
- meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
- meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
- meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
- meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
- meta_reports/migrations/0024_glucosesummary.py +38 -0
- meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
- meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
- meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
- meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
- meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
- meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
- meta_reports/migrations/0031_endpointsproxy.py +25 -0
- meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
- meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
- meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
- meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
- meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
- meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
- meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
- meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
- meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
- meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
- meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
- meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
- meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
- meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
- meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
- meta_reports/migrations/0047_impsubstitutions.py +56 -0
- meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
- meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
- meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
- meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
- meta_reports/migrations/0052_lastimpvisit.py +57 -0
- meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
- meta_reports/models/__init__.py +16 -0
- meta_reports/models/dbviews/README +14 -0
- meta_reports/models/dbviews/__init__.py +9 -0
- meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
- meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
- meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
- meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
- meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
- meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
- meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
- meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
- meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
- meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
- meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
- meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
- meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
- meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
- meta_reports/models/endpoints.py +31 -0
- meta_reports/models/endpoints_proxy.py +11 -0
- meta_reports/models/last_imp_refill.py +34 -0
- meta_reports/tasks.py +12 -0
- meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
- meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
- meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
- meta_reports/tests/test_sql_gen.py +5 -0
- meta_reports/urls.py +8 -0
- meta_reports/utils.py +0 -0
- meta_screening/admin/subject_screening_admin.py +1 -0
- meta_screening/form_validators/screening_part_two.py +1 -1
- meta_screening/migrations/0062_remove_icpreferral_site_and_more.py +27 -0
- meta_screening/migrations/0063_alter_historicalscreeningpartone_fasting_duration_str_and_more.py +184 -0
- meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
- meta_screening/migrations/0065_auto_20240516_0352.py +31 -0
- meta_screening/migrations/0066_alter_historicalscreeningpartone_fasting_duration_delta_and_more.py +103 -0
- meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
- meta_screening/models/__init__.py +1 -1
- meta_screening/tests/holidays.csv +1 -1
- meta_screening/tests/meta_test_case_mixin.py +17 -2
- meta_screening/tests/options.py +3 -3
- meta_sites/__init__.py +0 -1
- meta_sites/sites.py +8 -7
- meta_sites/tests/test_sites.py +1 -1
- meta_subject/action_items.py +25 -2
- meta_subject/admin/__init__.py +2 -1
- meta_subject/admin/birth_outcome_admin.py +4 -3
- meta_subject/admin/blood_results/__init__.py +1 -1
- meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
- meta_subject/admin/delivery_admin.py +0 -1
- meta_subject/admin/diabetes/__init__.py +2 -0
- meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
- meta_subject/admin/{dm_referral_followup_admin.py → diabetes/dm_followup_admin.py} +15 -8
- meta_subject/admin/glucose_admin.py +1 -1
- meta_subject/admin/glucose_fbg_admin.py +38 -8
- meta_subject/admin/other_arv_regimens_admin.py +2 -0
- meta_subject/admin/study_medication_admin.py +10 -0
- meta_subject/admin/subject_visit_admin.py +4 -1
- meta_subject/baker_recipes.py +6 -0
- meta_subject/choices.py +8 -0
- meta_subject/constants.py +2 -1
- meta_subject/form_validators/__init__.py +2 -1
- meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
- meta_subject/form_validators/{dm_referral_followup_form_validator.py → dm_followup_form_validator.py} +41 -2
- meta_subject/forms/__init__.py +2 -1
- meta_subject/forms/blood_results/__init__.py +1 -1
- meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
- meta_subject/forms/diabetes/__init__.py +2 -0
- meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
- meta_subject/forms/diabetes/dm_followup_form.py +25 -0
- meta_subject/forms/glucose_fbg_form.py +38 -16
- meta_subject/forms/study_medication_form.py +35 -0
- meta_subject/forms/subject_visit_form.py +16 -0
- meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
- meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
- meta_subject/metadata_rules/metadata_rules.py +21 -0
- meta_subject/metadata_rules/predicates.py +67 -8
- meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
- meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
- meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
- meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
- meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
- meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
- meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
- meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
- meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
- meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
- meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
- meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +55 -0
- meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +451 -0
- meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +403 -0
- meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
- meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
- meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
- meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
- meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
- meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
- meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
- meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
- meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
- meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
- meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
- meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
- meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
- meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
- meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
- meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
- meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
- meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
- meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
- meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
- meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
- meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
- meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
- meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
- meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
- meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
- meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
- meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
- meta_subject/models/__init__.py +3 -2
- meta_subject/models/birth_outcomes.py +6 -1
- meta_subject/models/blood_results/__init__.py +1 -1
- meta_subject/models/blood_results/blood_results_fbc.py +3 -2
- meta_subject/models/blood_results/blood_results_hba1c.py +2 -0
- meta_subject/models/blood_results/blood_results_ins.py +2 -0
- meta_subject/models/blood_results/blood_results_lft.py +2 -0
- meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +5 -3
- meta_subject/models/blood_results/blood_results_rft.py +2 -0
- meta_subject/models/diabetes/__init__.py +2 -0
- meta_subject/models/diabetes/dm_endpoint.py +61 -0
- meta_subject/models/{dm_referral_followup.py → diabetes/dm_followup.py} +18 -6
- meta_subject/models/glucose.py +7 -14
- meta_subject/models/glucose_fbg.py +40 -51
- meta_subject/models/health_economics/health_economics_update.py +2 -0
- meta_subject/models/physical_exam.py +1 -0
- meta_subject/models/signals.py +19 -0
- meta_subject/models/subject_requisition.py +3 -4
- meta_subject/models/todo.txt +1 -1
- meta_subject/static/meta_subject/slider.css +1 -1
- meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
- meta_subject/templates/meta_subject/widgets/slider.html +0 -1
- meta_subject/tests/holidays.csv +1 -1
- meta_subject/tests/tests/test_egfr.py +6 -5
- meta_subject/tests/tests/test_medication_adherence.py +5 -1
- meta_subject/tests/tests/test_metadata_rules.py +34 -4
- meta_subject/tests/tests/test_mnsi.py +212 -121
- meta_subject/tests/tests/test_sf12.py +0 -12
- meta_visit_schedule/constants.py +7 -1
- meta_visit_schedule/tests/tests/test_schedule.py +4 -0
- meta_visit_schedule/visit_schedules/phase_three/crfs.py +87 -14
- meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
- meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +60 -0
- meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +2 -0
- tests/etc/randomization_list.csv +1 -1
- {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
- tests/holidays.csv +1 -1
- tests/test_settings.py +186 -0
- meta_edc/tests/etc/user-aes-local.key +0 -1
- meta_edc/tests/etc/user-aes-restricted.key +0 -0
- meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
- meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
- meta_edc/tests/etc/user-salt-local.key +0 -0
- meta_edc/tests/etc/user-salt-restricted.key +0 -0
- meta_edc-0.3.7.dist-info/METADATA +0 -87
- meta_reports/tests/holidays.csv +0 -15
- meta_subject/forms/dm_referral_followup.py +0 -18
- /meta_edc-0.3.7.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
- /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
- /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -1,6 +1,7 @@
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from django.db import models
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from django.db.models import PROTECT, Index
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from edc_consent.model_mixins import RequiresConsentFieldsModelMixin
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_model.models import BaseUuidModel, HistoricalRecords
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from edc_offstudy.model_mixins import OffstudyCrfModelMixin
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from edc_sites.managers import CurrentSiteManager
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class BirthOutcomes(
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CrfStatusModelMixin,
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SiteModelMixin,
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RequiresConsentFieldsModelMixin,
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OffstudyCrfModelMixin,
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BaseUuidModel,
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):
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"""A user model to capture birth outcomes.
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@@ -2,5 +2,5 @@ from .blood_results_fbc import BloodResultsFbc
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from .blood_results_hba1c import BloodResultsHba1c
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from .blood_results_ins import BloodResultsIns
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from .blood_results_lft import BloodResultsLft
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from .
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from .blood_results_lipids import BloodResultsLipids
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from .blood_results_rft import BloodResultsRft
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from django.db import models
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from edc_crf.model_mixins import CrfWithActionModelMixin
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from edc_crf.model_mixins import CrfStatusModelMixin, CrfWithActionModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import fbc_panel
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from edc_lab_results import BLOOD_RESULTS_FBC_ACTION
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@@ -29,6 +29,7 @@ class BloodResultsFbc(
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MchcModelMixin,
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McvModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name = BLOOD_RESULTS_FBC_ACTION
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limit_choices_to={"panel__name": fbc_panel.name}, **requisition_fk_options
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)
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class Meta(CrfWithActionModelMixin.Meta, BaseUuidModel.Meta):
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class Meta(CrfWithActionModelMixin.Meta, CrfStatusModelMixin.Meta, BaseUuidModel.Meta):
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verbose_name = "Blood Result: FBC"
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verbose_name_plural = "Blood Results: FBC"
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from django.db import models
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import hba1c_panel
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from edc_lab_results import BLOOD_RESULTS_HBA1C_ACTION
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@@ -13,6 +14,7 @@ class BloodResultsHba1c(
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Hba1cModelMixin,
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CrfWithRequisitionModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name = BLOOD_RESULTS_HBA1C_ACTION
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@@ -1,4 +1,5 @@
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from django.db import models
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import insulin_panel
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from edc_lab_results import BLOOD_RESULTS_INSULIN_ACTION
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@@ -13,6 +14,7 @@ class BloodResultsIns(
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InsulinModelMixin,
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CrfWithRequisitionModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name = BLOOD_RESULTS_INSULIN_ACTION
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from django.db import models
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import lft_panel
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from edc_lab_results import BLOOD_RESULTS_LFT_ACTION
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@@ -26,6 +27,7 @@ class BloodResultsLft(
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GgtModelMixin,
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CrfWithRequisitionModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name = BLOOD_RESULTS_LFT_ACTION
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@@ -1,7 +1,8 @@
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from django.db import models
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import lipids_panel
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from edc_lab_results import
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from edc_lab_results import BLOOD_RESULTS_LIPIDS_ACTION
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from edc_lab_results.model_mixins import (
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BloodResultsModelMixin,
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CholModelMixin,
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@@ -14,7 +15,7 @@ from edc_model.models import BaseUuidModel
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from ...model_mixins import CrfWithActionModelMixin
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class
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class BloodResultsLipids(
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CrfWithActionModelMixin,
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HdlModelMixin,
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LdlModelMixin,
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@@ -22,9 +23,10 @@ class BloodResultsLipid(
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CholModelMixin,
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CrfWithRequisitionModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name =
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action_name = BLOOD_RESULTS_LIPIDS_ACTION
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tracking_identifier_prefix = "LP"
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lab_panel = lipids_panel
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@@ -1,4 +1,5 @@
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from django.db import models
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from edc_crf.model_mixins import CrfStatusModelMixin
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from edc_egfr.model_mixins import EgfrModelMixin
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from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
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from edc_lab_panel.panels import rft_panel
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@@ -22,6 +23,7 @@ class BloodResultsRft(
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UricAcidModelMixin,
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CrfWithRequisitionModelMixin,
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BloodResultsModelMixin,
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CrfStatusModelMixin,
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BaseUuidModel,
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):
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action_name = BLOOD_RESULTS_RFT_ACTION
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@@ -0,0 +1,61 @@
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from django.db import models
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from edc_constants.choices import YES_NO, YES_NO_RETIRED
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from edc_constants.constants import QUESTION_RETIRED
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from edc_model.models import BaseUuidModel
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from edc_model_fields.fields import OtherCharField
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from ...model_mixins import CrfModelMixin
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class DmEndpoint(CrfModelMixin, BaseUuidModel):
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"""A user model to enrolled patient onto the DM Referral
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Schedule.
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"""
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endpoint_reached = models.CharField(
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verbose_name="Was the patient referred because the diabetes endpoint was reached?",
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max_length=15,
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choices=YES_NO,
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null=True,
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blank=False,
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help_text="If YES, the EDC will check for the patient on the Endpoints report.",
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)
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# retired
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dx_date = models.DateField(verbose_name="Date endpoint reached", null=True)
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# retired
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dx_initiated_by = models.CharField(
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verbose_name="What initiated the diagnosis",
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max_length=25,
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default=QUESTION_RETIRED,
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)
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# retired
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dx_initiated_by_other = OtherCharField(null=True, blank=True)
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# retired
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dx_tmg = models.CharField(
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verbose_name="Was this case discussed with the TMG?",
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max_length=25,
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choices=YES_NO_RETIRED,
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default=QUESTION_RETIRED,
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)
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# retired
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dx_tmg_date = models.DateField(
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verbose_name="If YES, provide the date of the TMG discussion", null=True, blank=True
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)
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# retired
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dx_no_tmg_reason = models.TextField(
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verbose_name="If NO, please explain why this case was not discussed with the TMG",
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null=True,
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blank=True,
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)
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comments = models.TextField(verbose_name="Any other comments", null=True, blank=True)
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class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
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verbose_name = "Diabetes endpoint"
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verbose_name_plural = "Diabetes endpoint"
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@@ -1,6 +1,7 @@
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from django.core.validators import MaxValueValidator, MinValueValidator
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from django.db import models
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from django.utils.html import format_html
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from edc_action_item.models import ActionItem
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from edc_adherence.choices import MISSED_PILLS
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from edc_constants.choices import YES_NO, YES_NO_NA
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from edc_constants.constants import NOT_APPLICABLE, QUESTION_RETIRED
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@@ -16,10 +17,14 @@ from meta_lists.models import (
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MissedReferralReasons,
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)
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from
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from ...constants import DM_FOLLOWUP_ACTION
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from ...model_mixins import CrfWithActionModelMixin
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23
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class
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24
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class DmFollowup(CrfWithActionModelMixin, BaseUuidModel):
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25
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|
26
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action_name = DM_FOLLOWUP_ACTION
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28
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referral_date = models.DateField(
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24
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verbose_name="Date of referral to diabetes clinic",
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25
30
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)
|
@@ -138,7 +143,7 @@ class DmReferralFollowup(CrfModelMixin, BaseUuidModel):
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138
143
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139
144
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on_dm_medications = models.CharField(
|
140
145
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verbose_name="Are you currently taking any drug therapy for diabetes?",
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choices=
|
146
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choices=YES_NO_NA,
|
142
147
|
max_length=25,
|
143
148
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)
|
144
149
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@@ -199,6 +204,13 @@ class DmReferralFollowup(CrfModelMixin, BaseUuidModel):
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204
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blank=True,
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)
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207
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def save(self, *args, **kwargs):
|
208
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self.action_item = ActionItem.objects.get(
|
209
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subject_identifier=self.subject_identifier, action_type__name=self.action_name
|
210
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)
|
211
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+
self.action_identifier = self.action_item.action_identifier
|
212
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+
super().save(*args, **kwargs)
|
213
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+
|
214
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+
class Meta(CrfWithActionModelMixin.Meta, BaseUuidModel.Meta):
|
215
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+
verbose_name = "Diabetes follow-up after referral"
|
216
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+
verbose_name_plural = "Diabetes follow-up after referral"
|
meta_subject/models/glucose.py
CHANGED
@@ -1,7 +1,6 @@
|
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1
1
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from django.db import models
|
2
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-
from django.utils.translation import gettext as _
|
3
2
|
from edc_constants.choices import YES_NO
|
4
|
-
from edc_constants.constants import
|
3
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+
from edc_constants.constants import NOT_APPLICABLE
|
5
4
|
from edc_glucose.model_mixins import (
|
6
5
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fasting_model_mixin_factory,
|
7
6
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fbg_model_mixin_factory,
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@@ -10,16 +9,10 @@ from edc_glucose.model_mixins import (
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9
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from edc_model.models import BaseUuidModel
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from edc_utils import formatted_date
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+
from ..choices import ENDPOINT_CHOICES
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from ..constants import AMENDMENT_DATE
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from ..model_mixins import CrfModelMixin
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-
ENDPOINT_CHOICES = (
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(YES, _(YES)),
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(PENDING, _("No. A repeat FBG will be scheduled")),
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(NO, _(NO)),
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(NOT_APPLICABLE, _("Not applicable")),
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)
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-
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class Glucose(
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CrfModelMixin,
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@@ -38,10 +31,10 @@ class Glucose(
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ogtt_model_mixin_factory("ogtt"),
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BaseUuidModel,
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):
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-
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-
# TODO: move IFG to bloogresultglu. Use this form for OGTT only 27/01/2021
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+
"""A user model to capture both FBG/RBG and OGTT
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-
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+
See also GlucoseFbg.
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"""
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fbg_performed = models.CharField(
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verbose_name="Was the FBG test performed?",
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@@ -81,5 +74,5 @@ class Glucose(
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)
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class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
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verbose_name = "Glucose (
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verbose_name_plural = "Glucose (
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verbose_name = "Glucose (FBG/RBG, OGTT)"
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verbose_name_plural = "Glucose (FBG/RBG, OGTT)"
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@@ -1,70 +1,59 @@
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1
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-
from django.core.validators import MaxValueValidator, MinValueValidator
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2
1
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from django.db import models
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3
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-
from edc_constants.choices import
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-
from edc_constants.constants import
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-
from edc_glucose.
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-
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7
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-
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from edc_model.models import BaseUuidModel
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9
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-
from edc_model.validators import datetime_not_future
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10
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-
from edc_reportable import (
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MILLIGRAMS_PER_DECILITER,
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-
MILLIMOLES_PER_LITER,
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13
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-
MILLIMOLES_PER_LITER_DISPLAY,
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2
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+
from edc_constants.choices import YES_NO
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3
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+
from edc_constants.constants import NO
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4
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+
from edc_glucose.model_mixins import (
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5
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+
fasting_model_mixin_factory,
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6
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+
fbg_model_mixin_factory,
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14
7
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)
|
8
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+
from edc_model.models import BaseUuidModel
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15
9
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16
10
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from ..model_mixins import CrfModelMixin
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11
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12
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-
class
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-
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-
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-
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-
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24
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-
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25
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-
|
13
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+
class GlucoseFbg(
|
14
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+
CrfModelMixin,
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15
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+
fasting_model_mixin_factory(
|
16
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+
None,
|
17
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+
fasting=models.CharField(
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18
|
+
verbose_name="Has the participant fasted?",
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19
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+
max_length=15,
|
20
|
+
choices=YES_NO,
|
21
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+
null=True,
|
22
|
+
blank=False,
|
23
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+
help_text="As reported by patient",
|
26
24
|
),
|
27
|
-
decimal_places=2,
|
28
|
-
validators=[MinValueValidator(1.00), MaxValueValidator(GLUCOSE_HIGH_READING)],
|
29
|
-
exclude_attrs_for_reportable=True,
|
30
25
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),
|
31
|
-
|
26
|
+
fbg_model_mixin_factory("fbg"),
|
27
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+
BaseUuidModel,
|
32
28
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):
|
33
|
-
fasting = models.CharField(
|
34
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-
verbose_name="Was this fasting or non-fasting?",
|
35
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-
max_length=25,
|
36
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-
choices=FASTING_CHOICES,
|
37
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-
null=True,
|
38
|
-
blank=False,
|
39
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-
)
|
40
29
|
|
41
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-
|
42
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-
|
43
|
-
|
44
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-
|
30
|
+
fbg_performed = models.CharField(
|
31
|
+
verbose_name="Was the FBG test performed?",
|
32
|
+
max_length=15,
|
33
|
+
choices=YES_NO,
|
45
34
|
)
|
46
35
|
|
47
|
-
|
48
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-
|
49
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-
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50
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-
|
51
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-
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52
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-
|
53
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-
class Meta:
|
54
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-
abstract = True
|
55
|
-
|
36
|
+
fbg_not_performed_reason = models.CharField(
|
37
|
+
verbose_name="If NO, provide reason",
|
38
|
+
max_length=150,
|
39
|
+
null=True,
|
40
|
+
blank=True,
|
41
|
+
)
|
56
42
|
|
57
|
-
|
58
|
-
|
59
|
-
|
60
|
-
|
61
|
-
|
43
|
+
fasting_duration_estimated = models.CharField(
|
44
|
+
max_length=15,
|
45
|
+
default=NO,
|
46
|
+
editable=False,
|
47
|
+
help_text=(
|
48
|
+
"Set to YES for existing values before duration "
|
49
|
+
"question was added to the form, otherwise NO"
|
50
|
+
),
|
51
|
+
)
|
62
52
|
|
63
|
-
|
64
|
-
verbose_name="Result date and time",
|
65
|
-
validators=[datetime_not_future],
|
53
|
+
repeat_fbg_date = models.DateField(
|
66
54
|
null=True,
|
67
55
|
blank=True,
|
56
|
+
help_text="Date should be within 1 week of report date",
|
68
57
|
)
|
69
58
|
|
70
59
|
class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
|
@@ -3,6 +3,7 @@ from django.db import models
|
|
3
3
|
from django.utils.translation import gettext as _
|
4
4
|
from edc_constants.choices import YES_NO
|
5
5
|
from edc_constants.constants import NOT_APPLICABLE
|
6
|
+
from edc_crf.model_mixins import SingletonCrfModelMixin
|
6
7
|
from edc_he.choices import RELATIONSHIP_CHOICES, STATUS
|
7
8
|
from edc_he.model_mixins import HouseholdModelMixin, income_model_mixin_factory
|
8
9
|
from edc_model.models import BaseUuidModel
|
@@ -21,6 +22,7 @@ class HealthEconomicsUpdate(
|
|
21
22
|
),
|
22
23
|
}
|
23
24
|
),
|
25
|
+
SingletonCrfModelMixin,
|
24
26
|
CrfModelMixin,
|
25
27
|
BaseUuidModel,
|
26
28
|
):
|
meta_subject/models/signals.py
CHANGED
@@ -11,6 +11,7 @@ from meta_edc.meta_version import get_meta_version
|
|
11
11
|
from meta_pharmacy.constants import METFORMIN
|
12
12
|
from meta_visit_schedule.constants import SCHEDULE_PREGNANCY
|
13
13
|
|
14
|
+
from . import Glucose, GlucoseFbg
|
14
15
|
from .delivery import Delivery
|
15
16
|
from .study_medication import StudyMedication
|
16
17
|
from .subject_visit import SubjectVisit
|
@@ -105,3 +106,21 @@ def update_schedule_on_delivery_post_save(sender, instance, raw, **kwargs):
|
|
105
106
|
subject_identifier=instance.subject_identifier,
|
106
107
|
offschedule_datetime=offschedule_datetime,
|
107
108
|
)
|
109
|
+
|
110
|
+
|
111
|
+
@receiver(
|
112
|
+
post_save,
|
113
|
+
weak=False,
|
114
|
+
dispatch_uid="update_glucose_endpoints_for_subject_on_post_save",
|
115
|
+
)
|
116
|
+
def update_glucose_endpoints_for_subject_on_post_save(
|
117
|
+
sender, instance, raw, update_fields, **kwargs
|
118
|
+
):
|
119
|
+
if not raw and not update_fields and sender in [Glucose, GlucoseFbg]:
|
120
|
+
from meta_analytics.dataframes import GlucoseEndpointsByDate
|
121
|
+
|
122
|
+
cls = GlucoseEndpointsByDate(
|
123
|
+
subject_identifiers=[instance.subject_visit.subject_identifier]
|
124
|
+
)
|
125
|
+
cls.run()
|
126
|
+
cls.to_model()
|
@@ -1,9 +1,8 @@
|
|
1
|
-
|
2
|
-
from edc_lab.managers import RequisitionManager as Manager # noqa
|
1
|
+
from edc_crf.model_mixins import CrfStatusModelMixin
|
3
2
|
from edc_lab.model_mixins import RequisitionModelMixin
|
4
3
|
from edc_model.models import BaseUuidModel
|
5
4
|
|
6
5
|
|
7
|
-
class SubjectRequisition(RequisitionModelMixin, BaseUuidModel):
|
8
|
-
class Meta(RequisitionModelMixin.Meta, BaseUuidModel.Meta):
|
6
|
+
class SubjectRequisition(RequisitionModelMixin, CrfStatusModelMixin, BaseUuidModel):
|
7
|
+
class Meta(RequisitionModelMixin.Meta, CrfStatusModelMixin.Meta, BaseUuidModel.Meta):
|
9
8
|
pass
|
meta_subject/models/todo.txt
CHANGED
meta_subject/tests/holidays.csv
CHANGED
@@ -9,7 +9,7 @@ import time_machine
|
|
9
9
|
from django import forms
|
10
10
|
from django.conf import settings
|
11
11
|
from django.contrib.sites.models import Site
|
12
|
-
from django.test import TestCase
|
12
|
+
from django.test import TestCase
|
13
13
|
from edc_action_item import site_action_items
|
14
14
|
from edc_action_item.models import ActionItem
|
15
15
|
from edc_constants.constants import BLACK, MALE
|
@@ -18,7 +18,7 @@ from edc_lab.models import Panel
|
|
18
18
|
from edc_lab_results import BLOOD_RESULTS_EGFR_ACTION, BLOOD_RESULTS_RFT_ACTION
|
19
19
|
from edc_registration import get_registered_subject_model_cls
|
20
20
|
from edc_reportable import MICROMOLES_PER_LITER, MILLIGRAMS_PER_DECILITER
|
21
|
-
from edc_utils import age
|
21
|
+
from edc_utils import age, get_utcnow
|
22
22
|
from edc_utils.round_up import round_half_away_from_zero
|
23
23
|
from edc_visit_schedule.constants import OFFSCHEDULE_ACTION
|
24
24
|
|
@@ -37,7 +37,7 @@ from meta_subject.models import (
|
|
37
37
|
@time_machine.travel(datetime(2019, 6, 11, 8, 00, tzinfo=ZoneInfo("UTC")))
|
38
38
|
class TestEgfr(MetaTestCaseMixin, TestCase):
|
39
39
|
def setUp(self):
|
40
|
-
self.subject_visit = self.get_subject_visit()
|
40
|
+
self.subject_visit = self.get_subject_visit(screening_datetime=get_utcnow())
|
41
41
|
panel = Panel.objects.get(name="chemistry_rft")
|
42
42
|
requisition = SubjectRequisition.objects.create(
|
43
43
|
subject_visit=self.subject_visit,
|
@@ -62,11 +62,12 @@ class TestEgfr(MetaTestCaseMixin, TestCase):
|
|
62
62
|
self.assertIsNotNone(obj.egfr_value)
|
63
63
|
self.assertIsNotNone(obj.egfr_units)
|
64
64
|
|
65
|
-
@tag("3")
|
66
65
|
def test_ok(self):
|
66
|
+
traveller = time_machine.travel(self.subject_visit.report_datetime)
|
67
|
+
traveller.start()
|
67
68
|
data = dict(
|
68
69
|
subject_visit=self.subject_visit,
|
69
|
-
report_datetime=
|
70
|
+
report_datetime=get_utcnow(),
|
70
71
|
)
|
71
72
|
form = BloodResultsRftFormValidator(cleaned_data=data, model=BloodResultsRft)
|
72
73
|
try:
|
@@ -37,7 +37,11 @@ class TestMedicationAdherence(MetaTestCaseMixin, TestCase):
|
|
37
37
|
|
38
38
|
def test_ok(self):
|
39
39
|
subject_visit = self.get_next_subject_visit(self.subject_visit)
|
40
|
-
obj = make_recipe(
|
40
|
+
obj = make_recipe(
|
41
|
+
"meta_subject.medicationadherence",
|
42
|
+
subject_visit=subject_visit,
|
43
|
+
report_datetime=subject_visit.report_datetime,
|
44
|
+
)
|
41
45
|
form = MedicationAdherenceForm(instance=obj)
|
42
46
|
form.is_valid()
|
43
47
|
self.assertIsNone(form._errors)
|
@@ -1,5 +1,5 @@
|
|
1
1
|
from dateutil.relativedelta import relativedelta
|
2
|
-
from django.test import TestCase
|
2
|
+
from django.test import TestCase, tag
|
3
3
|
from edc_appointment.models import Appointment
|
4
4
|
from edc_constants.constants import FEMALE, MALE, YES
|
5
5
|
from edc_utils import get_utcnow
|
@@ -10,7 +10,7 @@ from meta_consent.models import SubjectConsent
|
|
10
10
|
from meta_screening.models import SubjectScreening
|
11
11
|
from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
|
12
12
|
from meta_subject.forms import FollowupExaminationForm
|
13
|
-
from meta_visit_schedule.constants import DELIVERY, SCHEDULE_PREGNANCY
|
13
|
+
from meta_visit_schedule.constants import DELIVERY, MONTH3, SCHEDULE_PREGNANCY
|
14
14
|
|
15
15
|
|
16
16
|
class TestMetadataRules(MetaTestCaseMixin, TestCase):
|
@@ -99,7 +99,37 @@ class TestMetadataRules(MetaTestCaseMixin, TestCase):
|
|
99
99
|
subject_screening=subject_screening,
|
100
100
|
subject_consent=subject_consent,
|
101
101
|
)
|
102
|
-
self.
|
103
|
-
|
102
|
+
self.assertIn(
|
103
|
+
"meta_subject.delivery",
|
104
|
+
[obj.model for obj in self.get_crf_metadata(subject_visit)],
|
105
|
+
)
|
106
|
+
|
107
|
+
@tag("4")
|
108
|
+
def test_health_economics_update_required(self):
|
109
|
+
"""Assert healtheconomicsupdate is required starting w/1030"""
|
110
|
+
self.subject_visit = self.get_subject_visit(gender=FEMALE)
|
111
|
+
subject_visit = self.get_next_subject_visit(self.subject_visit)
|
112
|
+
subject_visit = self.get_next_subject_visit(subject_visit)
|
113
|
+
subject_visit = self.get_next_subject_visit(subject_visit)
|
114
|
+
self.assertEqual(subject_visit.visit_code, MONTH3)
|
115
|
+
self.assertIn(
|
116
|
+
"meta_subject.healtheconomicsupdate",
|
117
|
+
[obj.model for obj in self.get_crf_metadata(subject_visit)],
|
118
|
+
)
|
119
|
+
|
120
|
+
subject_visit = self.get_next_subject_visit(subject_visit)
|
121
|
+
self.assertIn(
|
122
|
+
"meta_subject.healtheconomicsupdate",
|
123
|
+
[obj.model for obj in self.get_crf_metadata(subject_visit)],
|
124
|
+
)
|
125
|
+
make_recipe(
|
126
|
+
"meta_subject.healtheconomicsupdate",
|
127
|
+
subject_visit=subject_visit,
|
128
|
+
report_datetime=subject_visit.report_datetime,
|
129
|
+
)
|
130
|
+
|
131
|
+
subject_visit = self.get_next_subject_visit(subject_visit)
|
132
|
+
self.assertNotIn(
|
133
|
+
"meta_subject.healtheconomicsupdate",
|
104
134
|
[obj.model for obj in self.get_crf_metadata(subject_visit)],
|
105
135
|
)
|