meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

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Files changed (411) hide show
  1. meta_ae/action_items.py +2 -2
  2. meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
  3. meta_ae/tests/holidays.csv +1 -1
  4. meta_analytics/README.rst +17 -0
  5. meta_analytics/dataframes/__init__.py +19 -0
  6. meta_analytics/dataframes/constants.py +33 -0
  7. meta_analytics/dataframes/enrolled/__init__.py +1 -0
  8. meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
  9. meta_analytics/dataframes/get_eos_df.py +26 -0
  10. meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
  11. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  12. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
  13. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
  14. meta_analytics/dataframes/screening/__init__.py +2 -0
  15. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
  16. meta_analytics/dataframes/screening/get_screening_df.py +163 -0
  17. meta_analytics/dataframes/utils.py +65 -0
  18. meta_analytics/get_tables.py +81 -0
  19. meta_analytics/tables/__init__.py +2 -0
  20. meta_analytics/tables/eligible.py +106 -0
  21. meta_analytics/tables/enrolled/__init__.py +0 -0
  22. meta_analytics/tables/enrolled/glucose.py +28 -0
  23. meta_analytics/tables/has_dm.py +61 -0
  24. meta_analytics/tests/__init__.py +0 -0
  25. meta_analytics/tests/test_endpoints_by_date.py +94 -0
  26. meta_auth/auth_objects.py +32 -3
  27. meta_auth/auths.py +18 -3
  28. meta_consent/action_items.py +18 -1
  29. meta_consent/admin/__init__.py +1 -0
  30. meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
  31. meta_consent/baker_recipes.py +5 -4
  32. meta_consent/consents.py +21 -2
  33. meta_consent/constants.py +1 -0
  34. meta_consent/forms/__init__.py +1 -0
  35. meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
  36. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  37. meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
  38. meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
  39. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
  40. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  41. meta_consent/models/__init__.py +1 -0
  42. meta_consent/models/signals.py +34 -13
  43. meta_consent/models/subject_consent_v1.py +1 -3
  44. meta_consent/models/subject_consent_v1_ext.py +29 -0
  45. meta_consent/tests/holidays.csv +1 -1
  46. meta_consent/tests/tests/test_form_validators.py +1 -1
  47. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  48. meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
  49. meta_dashboard/navbars.py +3 -1
  50. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
  51. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
  52. meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html +4 -4
  53. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
  54. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
  55. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html +1 -2
  56. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  57. meta_dashboard/tests/holidays.csv +1 -1
  58. meta_dashboard/tests/urls.py +0 -1
  59. meta_dashboard/view_utils/__init__.py +6 -0
  60. meta_dashboard/view_utils/subject_screening_button.py +2 -2
  61. meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
  62. meta_edc/__init__.py +7 -0
  63. meta_edc/celery.py +4 -13
  64. meta_edc/celery_live.py +18 -0
  65. meta_edc/celery_uat.py +24 -0
  66. meta_edc/management/commands/update_forms_reference.py +6 -2
  67. meta_edc/migrations/__init__.py +0 -0
  68. meta_edc/navbars.py +2 -1
  69. meta_edc/settings/debug.py +17 -9
  70. meta_edc/settings/defaults.py +82 -60
  71. meta_edc/settings/live.py +1 -9
  72. meta_edc/settings/uat.py +1 -14
  73. meta_edc/templates/meta_edc/bootstrap3/home.html +13 -7
  74. meta_edc/tests/tests/test_endpoints.py +22 -19
  75. meta_edc/urls.py +5 -2
  76. meta_edc/wsgi.py +1 -1
  77. meta_edc/wsgi_live.py +1 -1
  78. meta_edc/wsgi_uat.py +1 -1
  79. meta_edc-0.3.50.dist-info/AUTHORS +0 -0
  80. meta_edc-0.3.50.dist-info/METADATA +766 -0
  81. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/RECORD +400 -157
  82. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
  83. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
  84. meta_pharmacy/admin/__init__.py +2 -0
  85. meta_pharmacy/admin/rx_admin.py +75 -0
  86. meta_pharmacy/admin/substitutions_admin.py +67 -0
  87. meta_pharmacy/admin_site.py +9 -0
  88. meta_pharmacy/apps.py +5 -0
  89. meta_pharmacy/constants.py +10 -0
  90. meta_pharmacy/forms/__init__.py +2 -0
  91. meta_pharmacy/forms/rx_form.py +16 -0
  92. meta_pharmacy/forms/substitutions_form.py +54 -0
  93. meta_pharmacy/label_configs.py +30 -0
  94. meta_pharmacy/labels/__init__.py +5 -0
  95. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
  96. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  97. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  98. meta_pharmacy/labels/label_data.py +14 -0
  99. meta_pharmacy/labels/print_sheets.py +97 -0
  100. meta_pharmacy/list_data.py +8 -0
  101. meta_pharmacy/management/__init__.py +0 -0
  102. meta_pharmacy/management/commands/__init__.py +0 -0
  103. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
  104. meta_pharmacy/migrations/0002_initial.py +695 -0
  105. meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
  106. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  107. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  108. meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
  109. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  110. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
  111. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  112. meta_pharmacy/models/__init__.py +3 -0
  113. meta_pharmacy/models/label_data.py +38 -0
  114. meta_pharmacy/models/rx.py +18 -0
  115. meta_pharmacy/models/rx_label.py +39 -0
  116. meta_pharmacy/models/substitutions.py +88 -0
  117. meta_pharmacy/urls.py +8 -0
  118. meta_pharmacy/utils/__init__.py +1 -0
  119. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  120. meta_prn/action_items.py +52 -2
  121. meta_prn/admin/__init__.py +3 -0
  122. meta_prn/admin/dm_referral_admin.py +49 -0
  123. meta_prn/admin/offschedule_dm_referral_admin.py +47 -0
  124. meta_prn/admin/onschedule_dm_referral_admin.py +39 -0
  125. meta_prn/admin/pregnancy_notification_admin.py +6 -2
  126. meta_prn/baker_recipes.py +8 -1
  127. meta_prn/choices.py +2 -1
  128. meta_prn/constants.py +4 -1
  129. meta_prn/forms/__init__.py +2 -0
  130. meta_prn/forms/dm_referral_form.py +40 -0
  131. meta_prn/forms/offschedule_dm_referral_form.py +35 -0
  132. meta_prn/forms/offschedule_form.py +6 -0
  133. meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
  134. meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
  135. meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +1156 -0
  136. meta_prn/migrations/0058_dmreferral_referral_note_and_more.py +29 -0
  137. meta_prn/migrations/0059_alter_historicaloffstudymedication_reason_and_more.py +53 -0
  138. meta_prn/models/__init__.py +13 -2
  139. meta_prn/models/dm_referral.py +39 -0
  140. meta_prn/models/offschedule.py +15 -1
  141. meta_prn/models/onschedule.py +6 -0
  142. meta_prn/models/signals.py +41 -1
  143. meta_prn/tests/tests/test_dm_referral.py +203 -0
  144. meta_reports/__init__.py +1 -0
  145. meta_reports/admin/__init__.py +15 -0
  146. meta_reports/admin/dbviews/__init__.py +14 -0
  147. meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
  148. meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
  149. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
  150. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
  151. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
  152. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
  153. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
  154. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
  155. meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
  156. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
  157. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
  158. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
  159. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
  160. meta_reports/admin/endpoints_admin.py +14 -0
  161. meta_reports/admin/endpoints_all_admin.py +13 -0
  162. meta_reports/admin/last_imp_refill_admin.py +181 -0
  163. meta_reports/admin/list_filters.py +30 -0
  164. meta_reports/admin/modeladmin_mixins.py +112 -0
  165. meta_reports/admin_site.py +5 -0
  166. meta_reports/apps.py +1 -16
  167. meta_reports/forms/__init__.py +1 -0
  168. meta_reports/forms/missing_ogtt_note_form.py +33 -0
  169. meta_reports/management/__init__.py +0 -0
  170. meta_reports/management/commands/__init__.py +0 -0
  171. meta_reports/management/commands/generate_endpoints.py +13 -0
  172. meta_reports/migrations/0001_initial.py +87 -0
  173. meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
  174. meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
  175. meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
  176. meta_reports/migrations/0005_endpoints.py +47 -0
  177. meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
  178. meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
  179. meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
  180. meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
  181. meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
  182. meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
  183. meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
  184. meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
  185. meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
  186. meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
  187. meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
  188. meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
  189. meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
  190. meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
  191. meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
  192. meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
  193. meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
  194. meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
  195. meta_reports/migrations/0024_glucosesummary.py +38 -0
  196. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  197. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  198. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  199. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  200. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  201. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  202. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  203. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  204. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  205. meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
  206. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
  207. meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
  208. meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
  209. meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
  210. meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
  211. meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
  212. meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
  213. meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
  214. meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
  215. meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
  216. meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
  217. meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
  218. meta_reports/migrations/0047_impsubstitutions.py +56 -0
  219. meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
  220. meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
  221. meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
  222. meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
  223. meta_reports/migrations/0052_lastimpvisit.py +57 -0
  224. meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
  225. meta_reports/models/__init__.py +16 -0
  226. meta_reports/models/dbviews/README +14 -0
  227. meta_reports/models/dbviews/__init__.py +9 -0
  228. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  229. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  230. meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
  231. meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
  232. meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
  233. meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
  234. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  235. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
  236. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
  237. meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
  238. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
  239. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
  240. meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
  241. meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
  242. meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
  243. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
  244. meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
  245. meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
  246. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
  247. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
  248. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
  249. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
  250. meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
  251. meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
  252. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
  253. meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
  254. meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
  255. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
  256. meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
  257. meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
  258. meta_reports/models/endpoints.py +31 -0
  259. meta_reports/models/endpoints_proxy.py +11 -0
  260. meta_reports/models/last_imp_refill.py +34 -0
  261. meta_reports/tasks.py +12 -0
  262. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  263. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  264. meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
  265. meta_reports/tests/test_sql_gen.py +5 -0
  266. meta_reports/urls.py +8 -0
  267. meta_reports/utils.py +0 -0
  268. meta_screening/admin/subject_screening_admin.py +1 -0
  269. meta_screening/form_validators/screening_part_two.py +1 -1
  270. meta_screening/migrations/0062_remove_icpreferral_site_and_more.py +27 -0
  271. meta_screening/migrations/0063_alter_historicalscreeningpartone_fasting_duration_str_and_more.py +184 -0
  272. meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
  273. meta_screening/migrations/0065_auto_20240516_0352.py +31 -0
  274. meta_screening/migrations/0066_alter_historicalscreeningpartone_fasting_duration_delta_and_more.py +103 -0
  275. meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
  276. meta_screening/models/__init__.py +1 -1
  277. meta_screening/tests/holidays.csv +1 -1
  278. meta_screening/tests/meta_test_case_mixin.py +17 -2
  279. meta_screening/tests/options.py +3 -3
  280. meta_sites/__init__.py +0 -1
  281. meta_sites/sites.py +8 -7
  282. meta_sites/tests/test_sites.py +1 -1
  283. meta_subject/action_items.py +25 -2
  284. meta_subject/admin/__init__.py +2 -1
  285. meta_subject/admin/birth_outcome_admin.py +4 -3
  286. meta_subject/admin/blood_results/__init__.py +1 -1
  287. meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
  288. meta_subject/admin/delivery_admin.py +0 -1
  289. meta_subject/admin/diabetes/__init__.py +2 -0
  290. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  291. meta_subject/admin/{dm_referral_followup_admin.py → diabetes/dm_followup_admin.py} +15 -8
  292. meta_subject/admin/glucose_admin.py +1 -1
  293. meta_subject/admin/glucose_fbg_admin.py +38 -8
  294. meta_subject/admin/other_arv_regimens_admin.py +2 -0
  295. meta_subject/admin/study_medication_admin.py +10 -0
  296. meta_subject/admin/subject_visit_admin.py +4 -1
  297. meta_subject/baker_recipes.py +6 -0
  298. meta_subject/choices.py +8 -0
  299. meta_subject/constants.py +2 -1
  300. meta_subject/form_validators/__init__.py +2 -1
  301. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  302. meta_subject/form_validators/{dm_referral_followup_form_validator.py → dm_followup_form_validator.py} +41 -2
  303. meta_subject/forms/__init__.py +2 -1
  304. meta_subject/forms/blood_results/__init__.py +1 -1
  305. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
  306. meta_subject/forms/diabetes/__init__.py +2 -0
  307. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  308. meta_subject/forms/diabetes/dm_followup_form.py +25 -0
  309. meta_subject/forms/glucose_fbg_form.py +38 -16
  310. meta_subject/forms/study_medication_form.py +35 -0
  311. meta_subject/forms/subject_visit_form.py +16 -0
  312. meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
  313. meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
  314. meta_subject/metadata_rules/metadata_rules.py +21 -0
  315. meta_subject/metadata_rules/predicates.py +67 -8
  316. meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
  317. meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
  318. meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
  319. meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
  320. meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
  321. meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
  322. meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
  323. meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
  324. meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
  325. meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
  326. meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
  327. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +55 -0
  328. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +451 -0
  329. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +403 -0
  330. meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
  331. meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
  332. meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
  333. meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
  334. meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
  335. meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
  336. meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
  337. meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
  338. meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  339. meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  340. meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
  341. meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
  342. meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
  343. meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
  344. meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
  345. meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
  346. meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
  347. meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
  348. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  349. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  350. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  351. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  352. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  353. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  354. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  355. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  356. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  357. meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
  358. meta_subject/models/__init__.py +3 -2
  359. meta_subject/models/birth_outcomes.py +6 -1
  360. meta_subject/models/blood_results/__init__.py +1 -1
  361. meta_subject/models/blood_results/blood_results_fbc.py +3 -2
  362. meta_subject/models/blood_results/blood_results_hba1c.py +2 -0
  363. meta_subject/models/blood_results/blood_results_ins.py +2 -0
  364. meta_subject/models/blood_results/blood_results_lft.py +2 -0
  365. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +5 -3
  366. meta_subject/models/blood_results/blood_results_rft.py +2 -0
  367. meta_subject/models/diabetes/__init__.py +2 -0
  368. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  369. meta_subject/models/{dm_referral_followup.py → diabetes/dm_followup.py} +18 -6
  370. meta_subject/models/glucose.py +7 -14
  371. meta_subject/models/glucose_fbg.py +40 -51
  372. meta_subject/models/health_economics/health_economics_update.py +2 -0
  373. meta_subject/models/physical_exam.py +1 -0
  374. meta_subject/models/signals.py +19 -0
  375. meta_subject/models/subject_requisition.py +3 -4
  376. meta_subject/models/todo.txt +1 -1
  377. meta_subject/static/meta_subject/slider.css +1 -1
  378. meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
  379. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  380. meta_subject/tests/holidays.csv +1 -1
  381. meta_subject/tests/tests/test_egfr.py +6 -5
  382. meta_subject/tests/tests/test_medication_adherence.py +5 -1
  383. meta_subject/tests/tests/test_metadata_rules.py +34 -4
  384. meta_subject/tests/tests/test_mnsi.py +212 -121
  385. meta_subject/tests/tests/test_sf12.py +0 -12
  386. meta_visit_schedule/constants.py +7 -1
  387. meta_visit_schedule/tests/tests/test_schedule.py +4 -0
  388. meta_visit_schedule/visit_schedules/phase_three/crfs.py +87 -14
  389. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
  390. meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
  391. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +60 -0
  392. meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +2 -0
  393. tests/etc/randomization_list.csv +1 -1
  394. {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
  395. tests/holidays.csv +1 -1
  396. tests/test_settings.py +186 -0
  397. meta_edc/tests/etc/user-aes-local.key +0 -1
  398. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  399. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  400. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  401. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  402. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  403. meta_edc/tests/etc/user-salt-local.key +0 -0
  404. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  405. meta_edc-0.3.7.dist-info/METADATA +0 -87
  406. meta_reports/tests/holidays.csv +0 -15
  407. meta_subject/forms/dm_referral_followup.py +0 -18
  408. /meta_edc-0.3.7.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
  409. /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
  410. /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
  411. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -1,6 +1,7 @@
1
1
  from django.db import models
2
2
  from django.db.models import PROTECT, Index
3
3
  from edc_consent.model_mixins import RequiresConsentFieldsModelMixin
4
+ from edc_crf.model_mixins import CrfStatusModelMixin
4
5
  from edc_model.models import BaseUuidModel, HistoricalRecords
5
6
  from edc_offstudy.model_mixins import OffstudyCrfModelMixin
6
7
  from edc_sites.managers import CurrentSiteManager
@@ -35,7 +36,11 @@ class Manager(models.Manager):
35
36
 
36
37
 
37
38
  class BirthOutcomes(
38
- SiteModelMixin, RequiresConsentFieldsModelMixin, OffstudyCrfModelMixin, BaseUuidModel
39
+ CrfStatusModelMixin,
40
+ SiteModelMixin,
41
+ RequiresConsentFieldsModelMixin,
42
+ OffstudyCrfModelMixin,
43
+ BaseUuidModel,
39
44
  ):
40
45
  """A user model to capture birth outcomes.
41
46
 
@@ -2,5 +2,5 @@ from .blood_results_fbc import BloodResultsFbc
2
2
  from .blood_results_hba1c import BloodResultsHba1c
3
3
  from .blood_results_ins import BloodResultsIns
4
4
  from .blood_results_lft import BloodResultsLft
5
- from .blood_results_lipid import BloodResultsLipid
5
+ from .blood_results_lipids import BloodResultsLipids
6
6
  from .blood_results_rft import BloodResultsRft
@@ -1,5 +1,5 @@
1
1
  from django.db import models
2
- from edc_crf.model_mixins import CrfWithActionModelMixin
2
+ from edc_crf.model_mixins import CrfStatusModelMixin, CrfWithActionModelMixin
3
3
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
4
4
  from edc_lab_panel.panels import fbc_panel
5
5
  from edc_lab_results import BLOOD_RESULTS_FBC_ACTION
@@ -29,6 +29,7 @@ class BloodResultsFbc(
29
29
  MchcModelMixin,
30
30
  McvModelMixin,
31
31
  BloodResultsModelMixin,
32
+ CrfStatusModelMixin,
32
33
  BaseUuidModel,
33
34
  ):
34
35
  action_name = BLOOD_RESULTS_FBC_ACTION
@@ -40,6 +41,6 @@ class BloodResultsFbc(
40
41
  limit_choices_to={"panel__name": fbc_panel.name}, **requisition_fk_options
41
42
  )
42
43
 
43
- class Meta(CrfWithActionModelMixin.Meta, BaseUuidModel.Meta):
44
+ class Meta(CrfWithActionModelMixin.Meta, CrfStatusModelMixin.Meta, BaseUuidModel.Meta):
44
45
  verbose_name = "Blood Result: FBC"
45
46
  verbose_name_plural = "Blood Results: FBC"
@@ -1,4 +1,5 @@
1
1
  from django.db import models
2
+ from edc_crf.model_mixins import CrfStatusModelMixin
2
3
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
3
4
  from edc_lab_panel.panels import hba1c_panel
4
5
  from edc_lab_results import BLOOD_RESULTS_HBA1C_ACTION
@@ -13,6 +14,7 @@ class BloodResultsHba1c(
13
14
  Hba1cModelMixin,
14
15
  CrfWithRequisitionModelMixin,
15
16
  BloodResultsModelMixin,
17
+ CrfStatusModelMixin,
16
18
  BaseUuidModel,
17
19
  ):
18
20
  action_name = BLOOD_RESULTS_HBA1C_ACTION
@@ -1,4 +1,5 @@
1
1
  from django.db import models
2
+ from edc_crf.model_mixins import CrfStatusModelMixin
2
3
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
3
4
  from edc_lab_panel.panels import insulin_panel
4
5
  from edc_lab_results import BLOOD_RESULTS_INSULIN_ACTION
@@ -13,6 +14,7 @@ class BloodResultsIns(
13
14
  InsulinModelMixin,
14
15
  CrfWithRequisitionModelMixin,
15
16
  BloodResultsModelMixin,
17
+ CrfStatusModelMixin,
16
18
  BaseUuidModel,
17
19
  ):
18
20
  action_name = BLOOD_RESULTS_INSULIN_ACTION
@@ -1,4 +1,5 @@
1
1
  from django.db import models
2
+ from edc_crf.model_mixins import CrfStatusModelMixin
2
3
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
3
4
  from edc_lab_panel.panels import lft_panel
4
5
  from edc_lab_results import BLOOD_RESULTS_LFT_ACTION
@@ -26,6 +27,7 @@ class BloodResultsLft(
26
27
  GgtModelMixin,
27
28
  CrfWithRequisitionModelMixin,
28
29
  BloodResultsModelMixin,
30
+ CrfStatusModelMixin,
29
31
  BaseUuidModel,
30
32
  ):
31
33
  action_name = BLOOD_RESULTS_LFT_ACTION
@@ -1,7 +1,8 @@
1
1
  from django.db import models
2
+ from edc_crf.model_mixins import CrfStatusModelMixin
2
3
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
3
4
  from edc_lab_panel.panels import lipids_panel
4
- from edc_lab_results import BLOOD_RESULTS_LIPID_ACTION
5
+ from edc_lab_results import BLOOD_RESULTS_LIPIDS_ACTION
5
6
  from edc_lab_results.model_mixins import (
6
7
  BloodResultsModelMixin,
7
8
  CholModelMixin,
@@ -14,7 +15,7 @@ from edc_model.models import BaseUuidModel
14
15
  from ...model_mixins import CrfWithActionModelMixin
15
16
 
16
17
 
17
- class BloodResultsLipid(
18
+ class BloodResultsLipids(
18
19
  CrfWithActionModelMixin,
19
20
  HdlModelMixin,
20
21
  LdlModelMixin,
@@ -22,9 +23,10 @@ class BloodResultsLipid(
22
23
  CholModelMixin,
23
24
  CrfWithRequisitionModelMixin,
24
25
  BloodResultsModelMixin,
26
+ CrfStatusModelMixin,
25
27
  BaseUuidModel,
26
28
  ):
27
- action_name = BLOOD_RESULTS_LIPID_ACTION
29
+ action_name = BLOOD_RESULTS_LIPIDS_ACTION
28
30
  tracking_identifier_prefix = "LP"
29
31
  lab_panel = lipids_panel
30
32
 
@@ -1,4 +1,5 @@
1
1
  from django.db import models
2
+ from edc_crf.model_mixins import CrfStatusModelMixin
2
3
  from edc_egfr.model_mixins import EgfrModelMixin
3
4
  from edc_lab.model_mixins import CrfWithRequisitionModelMixin, requisition_fk_options
4
5
  from edc_lab_panel.panels import rft_panel
@@ -22,6 +23,7 @@ class BloodResultsRft(
22
23
  UricAcidModelMixin,
23
24
  CrfWithRequisitionModelMixin,
24
25
  BloodResultsModelMixin,
26
+ CrfStatusModelMixin,
25
27
  BaseUuidModel,
26
28
  ):
27
29
  action_name = BLOOD_RESULTS_RFT_ACTION
@@ -0,0 +1,2 @@
1
+ from .dm_endpoint import DmEndpoint
2
+ from .dm_followup import DmFollowup
@@ -0,0 +1,61 @@
1
+ from django.db import models
2
+ from edc_constants.choices import YES_NO, YES_NO_RETIRED
3
+ from edc_constants.constants import QUESTION_RETIRED
4
+ from edc_model.models import BaseUuidModel
5
+ from edc_model_fields.fields import OtherCharField
6
+
7
+ from ...model_mixins import CrfModelMixin
8
+
9
+
10
+ class DmEndpoint(CrfModelMixin, BaseUuidModel):
11
+ """A user model to enrolled patient onto the DM Referral
12
+ Schedule.
13
+ """
14
+
15
+ endpoint_reached = models.CharField(
16
+ verbose_name="Was the patient referred because the diabetes endpoint was reached?",
17
+ max_length=15,
18
+ choices=YES_NO,
19
+ null=True,
20
+ blank=False,
21
+ help_text="If YES, the EDC will check for the patient on the Endpoints report.",
22
+ )
23
+
24
+ # retired
25
+ dx_date = models.DateField(verbose_name="Date endpoint reached", null=True)
26
+
27
+ # retired
28
+ dx_initiated_by = models.CharField(
29
+ verbose_name="What initiated the diagnosis",
30
+ max_length=25,
31
+ default=QUESTION_RETIRED,
32
+ )
33
+
34
+ # retired
35
+ dx_initiated_by_other = OtherCharField(null=True, blank=True)
36
+
37
+ # retired
38
+ dx_tmg = models.CharField(
39
+ verbose_name="Was this case discussed with the TMG?",
40
+ max_length=25,
41
+ choices=YES_NO_RETIRED,
42
+ default=QUESTION_RETIRED,
43
+ )
44
+
45
+ # retired
46
+ dx_tmg_date = models.DateField(
47
+ verbose_name="If YES, provide the date of the TMG discussion", null=True, blank=True
48
+ )
49
+
50
+ # retired
51
+ dx_no_tmg_reason = models.TextField(
52
+ verbose_name="If NO, please explain why this case was not discussed with the TMG",
53
+ null=True,
54
+ blank=True,
55
+ )
56
+
57
+ comments = models.TextField(verbose_name="Any other comments", null=True, blank=True)
58
+
59
+ class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
60
+ verbose_name = "Diabetes endpoint"
61
+ verbose_name_plural = "Diabetes endpoint"
@@ -1,6 +1,7 @@
1
1
  from django.core.validators import MaxValueValidator, MinValueValidator
2
2
  from django.db import models
3
3
  from django.utils.html import format_html
4
+ from edc_action_item.models import ActionItem
4
5
  from edc_adherence.choices import MISSED_PILLS
5
6
  from edc_constants.choices import YES_NO, YES_NO_NA
6
7
  from edc_constants.constants import NOT_APPLICABLE, QUESTION_RETIRED
@@ -16,10 +17,14 @@ from meta_lists.models import (
16
17
  MissedReferralReasons,
17
18
  )
18
19
 
19
- from ..model_mixins import CrfModelMixin
20
+ from ...constants import DM_FOLLOWUP_ACTION
21
+ from ...model_mixins import CrfWithActionModelMixin
20
22
 
21
23
 
22
- class DmReferralFollowup(CrfModelMixin, BaseUuidModel):
24
+ class DmFollowup(CrfWithActionModelMixin, BaseUuidModel):
25
+
26
+ action_name = DM_FOLLOWUP_ACTION
27
+
23
28
  referral_date = models.DateField(
24
29
  verbose_name="Date of referral to diabetes clinic",
25
30
  )
@@ -138,7 +143,7 @@ class DmReferralFollowup(CrfModelMixin, BaseUuidModel):
138
143
 
139
144
  on_dm_medications = models.CharField(
140
145
  verbose_name="Are you currently taking any drug therapy for diabetes?",
141
- choices=YES_NO,
146
+ choices=YES_NO_NA,
142
147
  max_length=25,
143
148
  )
144
149
 
@@ -199,6 +204,13 @@ class DmReferralFollowup(CrfModelMixin, BaseUuidModel):
199
204
  blank=True,
200
205
  )
201
206
 
202
- class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
203
- verbose_name = "Diabetes referral follow-up"
204
- verbose_name_plural = "Diabetes referral follow-up"
207
+ def save(self, *args, **kwargs):
208
+ self.action_item = ActionItem.objects.get(
209
+ subject_identifier=self.subject_identifier, action_type__name=self.action_name
210
+ )
211
+ self.action_identifier = self.action_item.action_identifier
212
+ super().save(*args, **kwargs)
213
+
214
+ class Meta(CrfWithActionModelMixin.Meta, BaseUuidModel.Meta):
215
+ verbose_name = "Diabetes follow-up after referral"
216
+ verbose_name_plural = "Diabetes follow-up after referral"
@@ -1,7 +1,6 @@
1
1
  from django.db import models
2
- from django.utils.translation import gettext as _
3
2
  from edc_constants.choices import YES_NO
4
- from edc_constants.constants import NO, NOT_APPLICABLE, PENDING, YES
3
+ from edc_constants.constants import NOT_APPLICABLE
5
4
  from edc_glucose.model_mixins import (
6
5
  fasting_model_mixin_factory,
7
6
  fbg_model_mixin_factory,
@@ -10,16 +9,10 @@ from edc_glucose.model_mixins import (
10
9
  from edc_model.models import BaseUuidModel
11
10
  from edc_utils import formatted_date
12
11
 
12
+ from ..choices import ENDPOINT_CHOICES
13
13
  from ..constants import AMENDMENT_DATE
14
14
  from ..model_mixins import CrfModelMixin
15
15
 
16
- ENDPOINT_CHOICES = (
17
- (YES, _(YES)),
18
- (PENDING, _("No. A repeat FBG will be scheduled")),
19
- (NO, _(NO)),
20
- (NOT_APPLICABLE, _("Not applicable")),
21
- )
22
-
23
16
 
24
17
  class Glucose(
25
18
  CrfModelMixin,
@@ -38,10 +31,10 @@ class Glucose(
38
31
  ogtt_model_mixin_factory("ogtt"),
39
32
  BaseUuidModel,
40
33
  ):
41
- # TODO: diagnosis of diabetes is OGTT 11.1mmol / L ONLY. Triggers EoS form
42
- # TODO: move IFG to bloogresultglu. Use this form for OGTT only 27/01/2021
34
+ """A user model to capture both FBG/RBG and OGTT
43
35
 
44
- """A user model to capture IFG and OGTT"""
36
+ See also GlucoseFbg.
37
+ """
45
38
 
46
39
  fbg_performed = models.CharField(
47
40
  verbose_name="Was the FBG test performed?",
@@ -81,5 +74,5 @@ class Glucose(
81
74
  )
82
75
 
83
76
  class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
84
- verbose_name = "Glucose (IFG, OGTT)"
85
- verbose_name_plural = "Glucose (IFG, OGTT)"
77
+ verbose_name = "Glucose (FBG/RBG, OGTT)"
78
+ verbose_name_plural = "Glucose (FBG/RBG, OGTT)"
@@ -1,70 +1,59 @@
1
- from django.core.validators import MaxValueValidator, MinValueValidator
2
1
  from django.db import models
3
- from edc_constants.choices import FASTING_CHOICES
4
- from edc_constants.constants import EQ, FASTING
5
- from edc_glucose.constants import GLUCOSE_HIGH_READING
6
- from edc_lab.choices import RESULT_QUANTIFIER
7
- from edc_lab_panel.model_mixin_factory import reportable_result_model_mixin_factory
8
- from edc_model.models import BaseUuidModel
9
- from edc_model.validators import datetime_not_future
10
- from edc_reportable import (
11
- MILLIGRAMS_PER_DECILITER,
12
- MILLIMOLES_PER_LITER,
13
- MILLIMOLES_PER_LITER_DISPLAY,
2
+ from edc_constants.choices import YES_NO
3
+ from edc_constants.constants import NO
4
+ from edc_glucose.model_mixins import (
5
+ fasting_model_mixin_factory,
6
+ fbg_model_mixin_factory,
14
7
  )
8
+ from edc_model.models import BaseUuidModel
15
9
 
16
10
  from ..model_mixins import CrfModelMixin
17
11
 
18
12
 
19
- class GlucoseModelMixin(
20
- reportable_result_model_mixin_factory(
21
- utest_id="glucose",
22
- verbose_name="Glucose",
23
- units_choices=(
24
- (MILLIGRAMS_PER_DECILITER, MILLIGRAMS_PER_DECILITER),
25
- (MILLIMOLES_PER_LITER, MILLIMOLES_PER_LITER_DISPLAY),
13
+ class GlucoseFbg(
14
+ CrfModelMixin,
15
+ fasting_model_mixin_factory(
16
+ None,
17
+ fasting=models.CharField(
18
+ verbose_name="Has the participant fasted?",
19
+ max_length=15,
20
+ choices=YES_NO,
21
+ null=True,
22
+ blank=False,
23
+ help_text="As reported by patient",
26
24
  ),
27
- decimal_places=2,
28
- validators=[MinValueValidator(1.00), MaxValueValidator(GLUCOSE_HIGH_READING)],
29
- exclude_attrs_for_reportable=True,
30
25
  ),
31
- models.Model,
26
+ fbg_model_mixin_factory("fbg"),
27
+ BaseUuidModel,
32
28
  ):
33
- fasting = models.CharField(
34
- verbose_name="Was this fasting or non-fasting?",
35
- max_length=25,
36
- choices=FASTING_CHOICES,
37
- null=True,
38
- blank=False,
39
- )
40
29
 
41
- glucose_quantifier = models.CharField(
42
- max_length=10,
43
- choices=RESULT_QUANTIFIER,
44
- default=EQ,
30
+ fbg_performed = models.CharField(
31
+ verbose_name="Was the FBG test performed?",
32
+ max_length=15,
33
+ choices=YES_NO,
45
34
  )
46
35
 
47
- def get_summary_options(self) -> dict:
48
- opts = super().get_summary_options() # noqa
49
- fasting = True if self.fasting == FASTING else False
50
- opts.update(fasting=fasting)
51
- return opts
52
-
53
- class Meta:
54
- abstract = True
55
-
36
+ fbg_not_performed_reason = models.CharField(
37
+ verbose_name="If NO, provide reason",
38
+ max_length=150,
39
+ null=True,
40
+ blank=True,
41
+ )
56
42
 
57
- class GlucoseFbg(
58
- CrfModelMixin,
59
- GlucoseModelMixin,
60
- BaseUuidModel,
61
- ):
43
+ fasting_duration_estimated = models.CharField(
44
+ max_length=15,
45
+ default=NO,
46
+ editable=False,
47
+ help_text=(
48
+ "Set to YES for existing values before duration "
49
+ "question was added to the form, otherwise NO"
50
+ ),
51
+ )
62
52
 
63
- assay_datetime = models.DateTimeField(
64
- verbose_name="Result date and time",
65
- validators=[datetime_not_future],
53
+ repeat_fbg_date = models.DateField(
66
54
  null=True,
67
55
  blank=True,
56
+ help_text="Date should be within 1 week of report date",
68
57
  )
69
58
 
70
59
  class Meta(CrfModelMixin.Meta, BaseUuidModel.Meta):
@@ -3,6 +3,7 @@ from django.db import models
3
3
  from django.utils.translation import gettext as _
4
4
  from edc_constants.choices import YES_NO
5
5
  from edc_constants.constants import NOT_APPLICABLE
6
+ from edc_crf.model_mixins import SingletonCrfModelMixin
6
7
  from edc_he.choices import RELATIONSHIP_CHOICES, STATUS
7
8
  from edc_he.model_mixins import HouseholdModelMixin, income_model_mixin_factory
8
9
  from edc_model.models import BaseUuidModel
@@ -21,6 +22,7 @@ class HealthEconomicsUpdate(
21
22
  ),
22
23
  }
23
24
  ),
25
+ SingletonCrfModelMixin,
24
26
  CrfModelMixin,
25
27
  BaseUuidModel,
26
28
  ):
@@ -35,6 +35,7 @@ class PhysicalExam(
35
35
  validators=[MinValueValidator(50.0), MaxValueValidator(175.0)],
36
36
  help_text="in centimeters",
37
37
  null=True,
38
+ blank=True,
38
39
  )
39
40
 
40
41
  jaundice = models.CharField(verbose_name="Jaundice?", max_length=15, choices=YES_NO)
@@ -11,6 +11,7 @@ from meta_edc.meta_version import get_meta_version
11
11
  from meta_pharmacy.constants import METFORMIN
12
12
  from meta_visit_schedule.constants import SCHEDULE_PREGNANCY
13
13
 
14
+ from . import Glucose, GlucoseFbg
14
15
  from .delivery import Delivery
15
16
  from .study_medication import StudyMedication
16
17
  from .subject_visit import SubjectVisit
@@ -105,3 +106,21 @@ def update_schedule_on_delivery_post_save(sender, instance, raw, **kwargs):
105
106
  subject_identifier=instance.subject_identifier,
106
107
  offschedule_datetime=offschedule_datetime,
107
108
  )
109
+
110
+
111
+ @receiver(
112
+ post_save,
113
+ weak=False,
114
+ dispatch_uid="update_glucose_endpoints_for_subject_on_post_save",
115
+ )
116
+ def update_glucose_endpoints_for_subject_on_post_save(
117
+ sender, instance, raw, update_fields, **kwargs
118
+ ):
119
+ if not raw and not update_fields and sender in [Glucose, GlucoseFbg]:
120
+ from meta_analytics.dataframes import GlucoseEndpointsByDate
121
+
122
+ cls = GlucoseEndpointsByDate(
123
+ subject_identifiers=[instance.subject_visit.subject_identifier]
124
+ )
125
+ cls.run()
126
+ cls.to_model()
@@ -1,9 +1,8 @@
1
- # for reference by old migrations
2
- from edc_lab.managers import RequisitionManager as Manager # noqa
1
+ from edc_crf.model_mixins import CrfStatusModelMixin
3
2
  from edc_lab.model_mixins import RequisitionModelMixin
4
3
  from edc_model.models import BaseUuidModel
5
4
 
6
5
 
7
- class SubjectRequisition(RequisitionModelMixin, BaseUuidModel):
8
- class Meta(RequisitionModelMixin.Meta, BaseUuidModel.Meta):
6
+ class SubjectRequisition(RequisitionModelMixin, CrfStatusModelMixin, BaseUuidModel):
7
+ class Meta(RequisitionModelMixin.Meta, CrfStatusModelMixin.Meta, BaseUuidModel.Meta):
9
8
  pass
@@ -5,4 +5,4 @@
5
5
  - remove hepatitis
6
6
  - remove hba1c venous
7
7
 
8
- - add missing other specify fields on followup examination
8
+ - add missing other specify fields on followup examination
@@ -43,4 +43,4 @@ https://www.w3schools.com/howto/howto_js_rangeslider.asp
43
43
  border-radius: 50%;
44
44
  background: #4CAF50; /* Green background */
45
45
  cursor: pointer; /* Cursor on hover */
46
- }
46
+ }
@@ -3,4 +3,4 @@
3
3
  <BR>FBG≥7.0 and OGTT≥11.1: Yes, endpoint reached
4
4
  <BR>FBG<7v and OGTT≥11.1: Yes, endpoint reached
5
5
  <BR>FBG≥7.0 and OGTT<11.1: Not today, repeat FBG in 1 week<BR>
6
- </P>
6
+ </P>
@@ -20,4 +20,3 @@ slider.oninput = function() {
20
20
  output.innerHTML = this.value;
21
21
  }
22
22
  </script>
23
-
@@ -12,4 +12,4 @@
12
12
  2019-12-01,Mawlid Day,tanzania
13
13
  2019-12-09,Independence Day,tanzania
14
14
  2019-12-25,Christmas Day,tanzania
15
- 2019-12-26,Boxing Day,tanzania
15
+ 2019-12-26,Boxing Day,tanzania
@@ -9,7 +9,7 @@ import time_machine
9
9
  from django import forms
10
10
  from django.conf import settings
11
11
  from django.contrib.sites.models import Site
12
- from django.test import TestCase, tag
12
+ from django.test import TestCase
13
13
  from edc_action_item import site_action_items
14
14
  from edc_action_item.models import ActionItem
15
15
  from edc_constants.constants import BLACK, MALE
@@ -18,7 +18,7 @@ from edc_lab.models import Panel
18
18
  from edc_lab_results import BLOOD_RESULTS_EGFR_ACTION, BLOOD_RESULTS_RFT_ACTION
19
19
  from edc_registration import get_registered_subject_model_cls
20
20
  from edc_reportable import MICROMOLES_PER_LITER, MILLIGRAMS_PER_DECILITER
21
- from edc_utils import age
21
+ from edc_utils import age, get_utcnow
22
22
  from edc_utils.round_up import round_half_away_from_zero
23
23
  from edc_visit_schedule.constants import OFFSCHEDULE_ACTION
24
24
 
@@ -37,7 +37,7 @@ from meta_subject.models import (
37
37
  @time_machine.travel(datetime(2019, 6, 11, 8, 00, tzinfo=ZoneInfo("UTC")))
38
38
  class TestEgfr(MetaTestCaseMixin, TestCase):
39
39
  def setUp(self):
40
- self.subject_visit = self.get_subject_visit()
40
+ self.subject_visit = self.get_subject_visit(screening_datetime=get_utcnow())
41
41
  panel = Panel.objects.get(name="chemistry_rft")
42
42
  requisition = SubjectRequisition.objects.create(
43
43
  subject_visit=self.subject_visit,
@@ -62,11 +62,12 @@ class TestEgfr(MetaTestCaseMixin, TestCase):
62
62
  self.assertIsNotNone(obj.egfr_value)
63
63
  self.assertIsNotNone(obj.egfr_units)
64
64
 
65
- @tag("3")
66
65
  def test_ok(self):
66
+ traveller = time_machine.travel(self.subject_visit.report_datetime)
67
+ traveller.start()
67
68
  data = dict(
68
69
  subject_visit=self.subject_visit,
69
- report_datetime=self.subject_visit.report_datetime,
70
+ report_datetime=get_utcnow(),
70
71
  )
71
72
  form = BloodResultsRftFormValidator(cleaned_data=data, model=BloodResultsRft)
72
73
  try:
@@ -37,7 +37,11 @@ class TestMedicationAdherence(MetaTestCaseMixin, TestCase):
37
37
 
38
38
  def test_ok(self):
39
39
  subject_visit = self.get_next_subject_visit(self.subject_visit)
40
- obj = make_recipe("meta_subject.medicationadherence", subject_visit=subject_visit)
40
+ obj = make_recipe(
41
+ "meta_subject.medicationadherence",
42
+ subject_visit=subject_visit,
43
+ report_datetime=subject_visit.report_datetime,
44
+ )
41
45
  form = MedicationAdherenceForm(instance=obj)
42
46
  form.is_valid()
43
47
  self.assertIsNone(form._errors)
@@ -1,5 +1,5 @@
1
1
  from dateutil.relativedelta import relativedelta
2
- from django.test import TestCase
2
+ from django.test import TestCase, tag
3
3
  from edc_appointment.models import Appointment
4
4
  from edc_constants.constants import FEMALE, MALE, YES
5
5
  from edc_utils import get_utcnow
@@ -10,7 +10,7 @@ from meta_consent.models import SubjectConsent
10
10
  from meta_screening.models import SubjectScreening
11
11
  from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
12
12
  from meta_subject.forms import FollowupExaminationForm
13
- from meta_visit_schedule.constants import DELIVERY, SCHEDULE_PREGNANCY
13
+ from meta_visit_schedule.constants import DELIVERY, MONTH3, SCHEDULE_PREGNANCY
14
14
 
15
15
 
16
16
  class TestMetadataRules(MetaTestCaseMixin, TestCase):
@@ -99,7 +99,37 @@ class TestMetadataRules(MetaTestCaseMixin, TestCase):
99
99
  subject_screening=subject_screening,
100
100
  subject_consent=subject_consent,
101
101
  )
102
- self.assertEqual(
103
- ["meta_subject.delivery"],
102
+ self.assertIn(
103
+ "meta_subject.delivery",
104
+ [obj.model for obj in self.get_crf_metadata(subject_visit)],
105
+ )
106
+
107
+ @tag("4")
108
+ def test_health_economics_update_required(self):
109
+ """Assert healtheconomicsupdate is required starting w/1030"""
110
+ self.subject_visit = self.get_subject_visit(gender=FEMALE)
111
+ subject_visit = self.get_next_subject_visit(self.subject_visit)
112
+ subject_visit = self.get_next_subject_visit(subject_visit)
113
+ subject_visit = self.get_next_subject_visit(subject_visit)
114
+ self.assertEqual(subject_visit.visit_code, MONTH3)
115
+ self.assertIn(
116
+ "meta_subject.healtheconomicsupdate",
117
+ [obj.model for obj in self.get_crf_metadata(subject_visit)],
118
+ )
119
+
120
+ subject_visit = self.get_next_subject_visit(subject_visit)
121
+ self.assertIn(
122
+ "meta_subject.healtheconomicsupdate",
123
+ [obj.model for obj in self.get_crf_metadata(subject_visit)],
124
+ )
125
+ make_recipe(
126
+ "meta_subject.healtheconomicsupdate",
127
+ subject_visit=subject_visit,
128
+ report_datetime=subject_visit.report_datetime,
129
+ )
130
+
131
+ subject_visit = self.get_next_subject_visit(subject_visit)
132
+ self.assertNotIn(
133
+ "meta_subject.healtheconomicsupdate",
104
134
  [obj.model for obj in self.get_crf_metadata(subject_visit)],
105
135
  )