meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

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Files changed (411) hide show
  1. meta_ae/action_items.py +2 -2
  2. meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
  3. meta_ae/tests/holidays.csv +1 -1
  4. meta_analytics/README.rst +17 -0
  5. meta_analytics/dataframes/__init__.py +19 -0
  6. meta_analytics/dataframes/constants.py +33 -0
  7. meta_analytics/dataframes/enrolled/__init__.py +1 -0
  8. meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
  9. meta_analytics/dataframes/get_eos_df.py +26 -0
  10. meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
  11. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  12. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
  13. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
  14. meta_analytics/dataframes/screening/__init__.py +2 -0
  15. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
  16. meta_analytics/dataframes/screening/get_screening_df.py +163 -0
  17. meta_analytics/dataframes/utils.py +65 -0
  18. meta_analytics/get_tables.py +81 -0
  19. meta_analytics/tables/__init__.py +2 -0
  20. meta_analytics/tables/eligible.py +106 -0
  21. meta_analytics/tables/enrolled/__init__.py +0 -0
  22. meta_analytics/tables/enrolled/glucose.py +28 -0
  23. meta_analytics/tables/has_dm.py +61 -0
  24. meta_analytics/tests/__init__.py +0 -0
  25. meta_analytics/tests/test_endpoints_by_date.py +94 -0
  26. meta_auth/auth_objects.py +32 -3
  27. meta_auth/auths.py +18 -3
  28. meta_consent/action_items.py +18 -1
  29. meta_consent/admin/__init__.py +1 -0
  30. meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
  31. meta_consent/baker_recipes.py +5 -4
  32. meta_consent/consents.py +21 -2
  33. meta_consent/constants.py +1 -0
  34. meta_consent/forms/__init__.py +1 -0
  35. meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
  36. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  37. meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
  38. meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
  39. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
  40. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  41. meta_consent/models/__init__.py +1 -0
  42. meta_consent/models/signals.py +34 -13
  43. meta_consent/models/subject_consent_v1.py +1 -3
  44. meta_consent/models/subject_consent_v1_ext.py +29 -0
  45. meta_consent/tests/holidays.csv +1 -1
  46. meta_consent/tests/tests/test_form_validators.py +1 -1
  47. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  48. meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
  49. meta_dashboard/navbars.py +3 -1
  50. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
  51. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
  52. meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html +4 -4
  53. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
  54. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
  55. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html +1 -2
  56. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  57. meta_dashboard/tests/holidays.csv +1 -1
  58. meta_dashboard/tests/urls.py +0 -1
  59. meta_dashboard/view_utils/__init__.py +6 -0
  60. meta_dashboard/view_utils/subject_screening_button.py +2 -2
  61. meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
  62. meta_edc/__init__.py +7 -0
  63. meta_edc/celery.py +4 -13
  64. meta_edc/celery_live.py +18 -0
  65. meta_edc/celery_uat.py +24 -0
  66. meta_edc/management/commands/update_forms_reference.py +6 -2
  67. meta_edc/migrations/__init__.py +0 -0
  68. meta_edc/navbars.py +2 -1
  69. meta_edc/settings/debug.py +17 -9
  70. meta_edc/settings/defaults.py +82 -60
  71. meta_edc/settings/live.py +1 -9
  72. meta_edc/settings/uat.py +1 -14
  73. meta_edc/templates/meta_edc/bootstrap3/home.html +13 -7
  74. meta_edc/tests/tests/test_endpoints.py +22 -19
  75. meta_edc/urls.py +5 -2
  76. meta_edc/wsgi.py +1 -1
  77. meta_edc/wsgi_live.py +1 -1
  78. meta_edc/wsgi_uat.py +1 -1
  79. meta_edc-0.3.50.dist-info/AUTHORS +0 -0
  80. meta_edc-0.3.50.dist-info/METADATA +766 -0
  81. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/RECORD +400 -157
  82. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
  83. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
  84. meta_pharmacy/admin/__init__.py +2 -0
  85. meta_pharmacy/admin/rx_admin.py +75 -0
  86. meta_pharmacy/admin/substitutions_admin.py +67 -0
  87. meta_pharmacy/admin_site.py +9 -0
  88. meta_pharmacy/apps.py +5 -0
  89. meta_pharmacy/constants.py +10 -0
  90. meta_pharmacy/forms/__init__.py +2 -0
  91. meta_pharmacy/forms/rx_form.py +16 -0
  92. meta_pharmacy/forms/substitutions_form.py +54 -0
  93. meta_pharmacy/label_configs.py +30 -0
  94. meta_pharmacy/labels/__init__.py +5 -0
  95. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
  96. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  97. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  98. meta_pharmacy/labels/label_data.py +14 -0
  99. meta_pharmacy/labels/print_sheets.py +97 -0
  100. meta_pharmacy/list_data.py +8 -0
  101. meta_pharmacy/management/__init__.py +0 -0
  102. meta_pharmacy/management/commands/__init__.py +0 -0
  103. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
  104. meta_pharmacy/migrations/0002_initial.py +695 -0
  105. meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
  106. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  107. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  108. meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
  109. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  110. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
  111. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  112. meta_pharmacy/models/__init__.py +3 -0
  113. meta_pharmacy/models/label_data.py +38 -0
  114. meta_pharmacy/models/rx.py +18 -0
  115. meta_pharmacy/models/rx_label.py +39 -0
  116. meta_pharmacy/models/substitutions.py +88 -0
  117. meta_pharmacy/urls.py +8 -0
  118. meta_pharmacy/utils/__init__.py +1 -0
  119. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  120. meta_prn/action_items.py +52 -2
  121. meta_prn/admin/__init__.py +3 -0
  122. meta_prn/admin/dm_referral_admin.py +49 -0
  123. meta_prn/admin/offschedule_dm_referral_admin.py +47 -0
  124. meta_prn/admin/onschedule_dm_referral_admin.py +39 -0
  125. meta_prn/admin/pregnancy_notification_admin.py +6 -2
  126. meta_prn/baker_recipes.py +8 -1
  127. meta_prn/choices.py +2 -1
  128. meta_prn/constants.py +4 -1
  129. meta_prn/forms/__init__.py +2 -0
  130. meta_prn/forms/dm_referral_form.py +40 -0
  131. meta_prn/forms/offschedule_dm_referral_form.py +35 -0
  132. meta_prn/forms/offschedule_form.py +6 -0
  133. meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
  134. meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
  135. meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +1156 -0
  136. meta_prn/migrations/0058_dmreferral_referral_note_and_more.py +29 -0
  137. meta_prn/migrations/0059_alter_historicaloffstudymedication_reason_and_more.py +53 -0
  138. meta_prn/models/__init__.py +13 -2
  139. meta_prn/models/dm_referral.py +39 -0
  140. meta_prn/models/offschedule.py +15 -1
  141. meta_prn/models/onschedule.py +6 -0
  142. meta_prn/models/signals.py +41 -1
  143. meta_prn/tests/tests/test_dm_referral.py +203 -0
  144. meta_reports/__init__.py +1 -0
  145. meta_reports/admin/__init__.py +15 -0
  146. meta_reports/admin/dbviews/__init__.py +14 -0
  147. meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
  148. meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
  149. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
  150. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
  151. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
  152. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
  153. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
  154. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
  155. meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
  156. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
  157. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
  158. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
  159. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
  160. meta_reports/admin/endpoints_admin.py +14 -0
  161. meta_reports/admin/endpoints_all_admin.py +13 -0
  162. meta_reports/admin/last_imp_refill_admin.py +181 -0
  163. meta_reports/admin/list_filters.py +30 -0
  164. meta_reports/admin/modeladmin_mixins.py +112 -0
  165. meta_reports/admin_site.py +5 -0
  166. meta_reports/apps.py +1 -16
  167. meta_reports/forms/__init__.py +1 -0
  168. meta_reports/forms/missing_ogtt_note_form.py +33 -0
  169. meta_reports/management/__init__.py +0 -0
  170. meta_reports/management/commands/__init__.py +0 -0
  171. meta_reports/management/commands/generate_endpoints.py +13 -0
  172. meta_reports/migrations/0001_initial.py +87 -0
  173. meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
  174. meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
  175. meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
  176. meta_reports/migrations/0005_endpoints.py +47 -0
  177. meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
  178. meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
  179. meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
  180. meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
  181. meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
  182. meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
  183. meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
  184. meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
  185. meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
  186. meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
  187. meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
  188. meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
  189. meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
  190. meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
  191. meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
  192. meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
  193. meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
  194. meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
  195. meta_reports/migrations/0024_glucosesummary.py +38 -0
  196. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  197. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  198. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  199. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  200. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  201. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  202. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  203. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  204. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  205. meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
  206. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
  207. meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
  208. meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
  209. meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
  210. meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
  211. meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
  212. meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
  213. meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
  214. meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
  215. meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
  216. meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
  217. meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
  218. meta_reports/migrations/0047_impsubstitutions.py +56 -0
  219. meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
  220. meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
  221. meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
  222. meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
  223. meta_reports/migrations/0052_lastimpvisit.py +57 -0
  224. meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
  225. meta_reports/models/__init__.py +16 -0
  226. meta_reports/models/dbviews/README +14 -0
  227. meta_reports/models/dbviews/__init__.py +9 -0
  228. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  229. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  230. meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
  231. meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
  232. meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
  233. meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
  234. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  235. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
  236. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
  237. meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
  238. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
  239. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
  240. meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
  241. meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
  242. meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
  243. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
  244. meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
  245. meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
  246. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
  247. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
  248. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
  249. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
  250. meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
  251. meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
  252. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
  253. meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
  254. meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
  255. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
  256. meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
  257. meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
  258. meta_reports/models/endpoints.py +31 -0
  259. meta_reports/models/endpoints_proxy.py +11 -0
  260. meta_reports/models/last_imp_refill.py +34 -0
  261. meta_reports/tasks.py +12 -0
  262. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  263. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  264. meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
  265. meta_reports/tests/test_sql_gen.py +5 -0
  266. meta_reports/urls.py +8 -0
  267. meta_reports/utils.py +0 -0
  268. meta_screening/admin/subject_screening_admin.py +1 -0
  269. meta_screening/form_validators/screening_part_two.py +1 -1
  270. meta_screening/migrations/0062_remove_icpreferral_site_and_more.py +27 -0
  271. meta_screening/migrations/0063_alter_historicalscreeningpartone_fasting_duration_str_and_more.py +184 -0
  272. meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
  273. meta_screening/migrations/0065_auto_20240516_0352.py +31 -0
  274. meta_screening/migrations/0066_alter_historicalscreeningpartone_fasting_duration_delta_and_more.py +103 -0
  275. meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
  276. meta_screening/models/__init__.py +1 -1
  277. meta_screening/tests/holidays.csv +1 -1
  278. meta_screening/tests/meta_test_case_mixin.py +17 -2
  279. meta_screening/tests/options.py +3 -3
  280. meta_sites/__init__.py +0 -1
  281. meta_sites/sites.py +8 -7
  282. meta_sites/tests/test_sites.py +1 -1
  283. meta_subject/action_items.py +25 -2
  284. meta_subject/admin/__init__.py +2 -1
  285. meta_subject/admin/birth_outcome_admin.py +4 -3
  286. meta_subject/admin/blood_results/__init__.py +1 -1
  287. meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
  288. meta_subject/admin/delivery_admin.py +0 -1
  289. meta_subject/admin/diabetes/__init__.py +2 -0
  290. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  291. meta_subject/admin/{dm_referral_followup_admin.py → diabetes/dm_followup_admin.py} +15 -8
  292. meta_subject/admin/glucose_admin.py +1 -1
  293. meta_subject/admin/glucose_fbg_admin.py +38 -8
  294. meta_subject/admin/other_arv_regimens_admin.py +2 -0
  295. meta_subject/admin/study_medication_admin.py +10 -0
  296. meta_subject/admin/subject_visit_admin.py +4 -1
  297. meta_subject/baker_recipes.py +6 -0
  298. meta_subject/choices.py +8 -0
  299. meta_subject/constants.py +2 -1
  300. meta_subject/form_validators/__init__.py +2 -1
  301. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  302. meta_subject/form_validators/{dm_referral_followup_form_validator.py → dm_followup_form_validator.py} +41 -2
  303. meta_subject/forms/__init__.py +2 -1
  304. meta_subject/forms/blood_results/__init__.py +1 -1
  305. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
  306. meta_subject/forms/diabetes/__init__.py +2 -0
  307. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  308. meta_subject/forms/diabetes/dm_followup_form.py +25 -0
  309. meta_subject/forms/glucose_fbg_form.py +38 -16
  310. meta_subject/forms/study_medication_form.py +35 -0
  311. meta_subject/forms/subject_visit_form.py +16 -0
  312. meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
  313. meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
  314. meta_subject/metadata_rules/metadata_rules.py +21 -0
  315. meta_subject/metadata_rules/predicates.py +67 -8
  316. meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
  317. meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
  318. meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
  319. meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
  320. meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
  321. meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
  322. meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
  323. meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
  324. meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
  325. meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
  326. meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
  327. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +55 -0
  328. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +451 -0
  329. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +403 -0
  330. meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
  331. meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
  332. meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
  333. meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
  334. meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
  335. meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
  336. meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
  337. meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
  338. meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  339. meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  340. meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
  341. meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
  342. meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
  343. meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
  344. meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
  345. meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
  346. meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
  347. meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
  348. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  349. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  350. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  351. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  352. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  353. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  354. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  355. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  356. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  357. meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
  358. meta_subject/models/__init__.py +3 -2
  359. meta_subject/models/birth_outcomes.py +6 -1
  360. meta_subject/models/blood_results/__init__.py +1 -1
  361. meta_subject/models/blood_results/blood_results_fbc.py +3 -2
  362. meta_subject/models/blood_results/blood_results_hba1c.py +2 -0
  363. meta_subject/models/blood_results/blood_results_ins.py +2 -0
  364. meta_subject/models/blood_results/blood_results_lft.py +2 -0
  365. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +5 -3
  366. meta_subject/models/blood_results/blood_results_rft.py +2 -0
  367. meta_subject/models/diabetes/__init__.py +2 -0
  368. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  369. meta_subject/models/{dm_referral_followup.py → diabetes/dm_followup.py} +18 -6
  370. meta_subject/models/glucose.py +7 -14
  371. meta_subject/models/glucose_fbg.py +40 -51
  372. meta_subject/models/health_economics/health_economics_update.py +2 -0
  373. meta_subject/models/physical_exam.py +1 -0
  374. meta_subject/models/signals.py +19 -0
  375. meta_subject/models/subject_requisition.py +3 -4
  376. meta_subject/models/todo.txt +1 -1
  377. meta_subject/static/meta_subject/slider.css +1 -1
  378. meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
  379. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  380. meta_subject/tests/holidays.csv +1 -1
  381. meta_subject/tests/tests/test_egfr.py +6 -5
  382. meta_subject/tests/tests/test_medication_adherence.py +5 -1
  383. meta_subject/tests/tests/test_metadata_rules.py +34 -4
  384. meta_subject/tests/tests/test_mnsi.py +212 -121
  385. meta_subject/tests/tests/test_sf12.py +0 -12
  386. meta_visit_schedule/constants.py +7 -1
  387. meta_visit_schedule/tests/tests/test_schedule.py +4 -0
  388. meta_visit_schedule/visit_schedules/phase_three/crfs.py +87 -14
  389. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
  390. meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
  391. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +60 -0
  392. meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +2 -0
  393. tests/etc/randomization_list.csv +1 -1
  394. {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
  395. tests/holidays.csv +1 -1
  396. tests/test_settings.py +186 -0
  397. meta_edc/tests/etc/user-aes-local.key +0 -1
  398. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  399. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  400. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  401. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  402. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  403. meta_edc/tests/etc/user-salt-local.key +0 -0
  404. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  405. meta_edc-0.3.7.dist-info/METADATA +0 -87
  406. meta_reports/tests/holidays.csv +0 -15
  407. meta_subject/forms/dm_referral_followup.py +0 -18
  408. /meta_edc-0.3.7.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
  409. /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
  410. /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
  411. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -7,7 +7,11 @@ crfs_prn = CrfCollection(
7
7
  Crf(show_order=235, model="meta_subject.bloodresultshba1c"),
8
8
  Crf(show_order=245, model="meta_subject.bloodresultsrft"),
9
9
  Crf(show_order=255, model="meta_subject.bloodresultslft"),
10
- Crf(show_order=265, model="meta_subject.bloodresultslipid"),
10
+ Crf(show_order=265, model="meta_subject.bloodresultslipids"),
11
+ Crf(show_order=268, model="meta_subject.bloodresultsins"),
12
+ Crf(show_order=461, model="meta_subject.eq5d3l"),
13
+ Crf(show_order=466, model="meta_subject.sf12"),
14
+ Crf(show_order=471, model="meta_subject.mnsi"),
11
15
  Crf(show_order=275, model="meta_subject.hepatitistest"),
12
16
  Crf(show_order=285, model="meta_subject.malariatest"),
13
17
  Crf(show_order=295, model="meta_subject.urinedipsticktest"),
@@ -15,7 +19,6 @@ crfs_prn = CrfCollection(
15
19
  Crf(show_order=385, model="meta_subject.urinepregnancy"),
16
20
  Crf(show_order=505, model="meta_subject.pregnancyupdate"),
17
21
  Crf(show_order=515, model="meta_subject.egfrdropnotification"),
18
- Crf(show_order=615, model="meta_subject.dmreferralfollowup"),
19
22
  name="prn",
20
23
  )
21
24
 
@@ -41,7 +44,7 @@ crfs_d1 = CrfCollection(
41
44
  Crf(show_order=230, model="meta_subject.bloodresultsrft"),
42
45
  Crf(show_order=240, model="meta_subject.bloodresultslft"),
43
46
  Crf(show_order=250, model="meta_subject.bloodresultsfbc"),
44
- Crf(show_order=260, model="meta_subject.bloodresultslipid"),
47
+ Crf(show_order=260, model="meta_subject.bloodresultslipids"),
45
48
  Crf(show_order=360, model="meta_subject.malariatest"),
46
49
  Crf(show_order=370, model="meta_subject.urinedipsticktest"),
47
50
  Crf(show_order=400, model="meta_subject.studymedication"),
@@ -57,7 +60,7 @@ crfs_w2 = CrfCollection(
57
60
  Crf(show_order=310, model="meta_subject.medicationadherence"),
58
61
  Crf(show_order=460, model="meta_subject.eq5d3l"),
59
62
  Crf(show_order=465, model="meta_subject.sf12"),
60
- Crf(show_order=470, model="meta_subject.healtheconomicssimple"),
63
+ Crf(show_order=480, model="meta_subject.healtheconomicssimple"),
61
64
  name="week2",
62
65
  )
63
66
 
@@ -68,10 +71,10 @@ crfs_1m = CrfCollection(
68
71
  Crf(show_order=200, model="meta_subject.glucosefbg"),
69
72
  Crf(show_order=300, model="meta_subject.studymedication"),
70
73
  Crf(show_order=310, model="meta_subject.medicationadherence"),
71
- Crf(show_order=450, model="meta_subject.healtheconomicssimple", required=False),
72
74
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
73
75
  Crf(show_order=465, model="meta_subject.sf12", required=False),
74
76
  Crf(show_order=470, model="meta_subject.mnsi"),
77
+ Crf(show_order=480, model="meta_subject.healtheconomicssimple", required=False),
75
78
  name="1m",
76
79
  )
77
80
 
@@ -87,6 +90,7 @@ crfs_3m = CrfCollection(
87
90
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
88
91
  Crf(show_order=465, model="meta_subject.sf12", required=False),
89
92
  Crf(show_order=470, model="meta_subject.mnsi", required=False),
93
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate"),
90
94
  name="3m",
91
95
  )
92
96
 
@@ -103,6 +107,7 @@ crfs_6m = CrfCollection(
103
107
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
104
108
  Crf(show_order=465, model="meta_subject.sf12", required=False),
105
109
  Crf(show_order=470, model="meta_subject.mnsi", required=False),
110
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
106
111
  name="6m",
107
112
  )
108
113
 
@@ -115,6 +120,7 @@ crfs_9m = CrfCollection(
115
120
  Crf(show_order=310, model="meta_subject.medicationadherence"),
116
121
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
117
122
  Crf(show_order=465, model="meta_subject.sf12", required=False),
123
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
118
124
  name="9m",
119
125
  )
120
126
 
@@ -126,11 +132,12 @@ crfs_12m = CrfCollection(
126
132
  Crf(show_order=220, model="meta_subject.bloodresultsrft"),
127
133
  Crf(show_order=230, model="meta_subject.bloodresultslft"),
128
134
  Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
129
- Crf(show_order=250, model="meta_subject.bloodresultslipid"),
135
+ Crf(show_order=250, model="meta_subject.bloodresultslipids"),
130
136
  Crf(show_order=300, model="meta_subject.studymedication"),
131
137
  Crf(show_order=310, model="meta_subject.medicationadherence"),
132
138
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
133
139
  Crf(show_order=465, model="meta_subject.sf12", required=False),
140
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
134
141
  name="12m",
135
142
  )
136
143
 
@@ -143,6 +150,7 @@ crfs_15m = CrfCollection(
143
150
  Crf(show_order=310, model="meta_subject.medicationadherence"),
144
151
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
145
152
  Crf(show_order=465, model="meta_subject.sf12", required=False),
153
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
146
154
  name="15m",
147
155
  )
148
156
 
@@ -156,6 +164,7 @@ crfs_18m = CrfCollection(
156
164
  Crf(show_order=310, model="meta_subject.medicationadherence"),
157
165
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
158
166
  Crf(show_order=465, model="meta_subject.sf12", required=False),
167
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
159
168
  name="18m",
160
169
  )
161
170
 
@@ -168,6 +177,7 @@ crfs_21m = CrfCollection(
168
177
  Crf(show_order=310, model="meta_subject.medicationadherence"),
169
178
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
170
179
  Crf(show_order=465, model="meta_subject.sf12", required=False),
180
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
171
181
  name="21m",
172
182
  )
173
183
 
@@ -179,11 +189,13 @@ crfs_24m = CrfCollection(
179
189
  Crf(show_order=220, model="meta_subject.bloodresultsrft"),
180
190
  Crf(show_order=230, model="meta_subject.bloodresultslft"),
181
191
  Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
182
- Crf(show_order=250, model="meta_subject.bloodresultslipid"),
192
+ Crf(show_order=250, model="meta_subject.bloodresultslipids"),
183
193
  Crf(show_order=300, model="meta_subject.studymedication"),
184
194
  Crf(show_order=310, model="meta_subject.medicationadherence"),
185
195
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
186
196
  Crf(show_order=465, model="meta_subject.sf12", required=False),
197
+ Crf(show_order=470, model="meta_subject.mnsi"),
198
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
187
199
  name="24m",
188
200
  )
189
201
 
@@ -191,11 +203,12 @@ crfs_27m = CrfCollection(
191
203
  Crf(show_order=100, model="meta_subject.followupvitals"),
192
204
  Crf(show_order=150, model="meta_subject.followupexamination"),
193
205
  Crf(show_order=155, model="meta_subject.glucose", required=False),
194
- Crf(show_order=200, model="meta_subject.glucosefbg"),
195
206
  Crf(show_order=300, model="meta_subject.studymedication"),
196
207
  Crf(show_order=310, model="meta_subject.medicationadherence"),
197
208
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
198
209
  Crf(show_order=465, model="meta_subject.sf12", required=False),
210
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
211
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
199
212
  name="27m",
200
213
  )
201
214
 
@@ -204,13 +217,12 @@ crfs_30m = CrfCollection(
204
217
  Crf(show_order=150, model="meta_subject.followupexamination"),
205
218
  Crf(show_order=155, model="meta_subject.glucose", required=False),
206
219
  Crf(show_order=205, model="meta_subject.glucosefbg"),
207
- Crf(show_order=210, model="meta_subject.bloodresultsrft"),
208
- Crf(show_order=220, model="meta_subject.bloodresultslft"),
209
- Crf(show_order=230, model="meta_subject.bloodresultsfbc"),
210
220
  Crf(show_order=300, model="meta_subject.studymedication"),
211
221
  Crf(show_order=310, model="meta_subject.medicationadherence"),
212
222
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
213
223
  Crf(show_order=465, model="meta_subject.sf12", required=False),
224
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
225
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
214
226
  name="30m",
215
227
  )
216
228
 
@@ -218,11 +230,12 @@ crfs_33m = CrfCollection(
218
230
  Crf(show_order=100, model="meta_subject.followupvitals"),
219
231
  Crf(show_order=150, model="meta_subject.followupexamination"),
220
232
  Crf(show_order=155, model="meta_subject.glucose", required=False),
221
- Crf(show_order=200, model="meta_subject.glucosefbg"),
222
233
  Crf(show_order=300, model="meta_subject.studymedication"),
223
234
  Crf(show_order=310, model="meta_subject.medicationadherence"),
224
235
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
225
236
  Crf(show_order=465, model="meta_subject.sf12", required=False),
237
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
238
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
226
239
  name="33m",
227
240
  )
228
241
 
@@ -234,10 +247,70 @@ crfs_36m = CrfCollection(
234
247
  Crf(show_order=220, model="meta_subject.bloodresultsrft"),
235
248
  Crf(show_order=230, model="meta_subject.bloodresultslft"),
236
249
  Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
237
- Crf(show_order=250, model="meta_subject.bloodresultslipid"),
250
+ Crf(show_order=250, model="meta_subject.bloodresultslipids"),
251
+ Crf(show_order=300, model="meta_subject.studymedication"),
252
+ Crf(show_order=310, model="meta_subject.medicationadherence"),
253
+ Crf(show_order=460, model="meta_subject.eq5d3l"),
254
+ Crf(show_order=465, model="meta_subject.sf12"),
255
+ Crf(show_order=470, model="meta_subject.mnsi"),
256
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
257
+ name="36m",
258
+ )
259
+
260
+ crfs_39m = CrfCollection(
261
+ Crf(show_order=100, model="meta_subject.followupvitals"),
262
+ Crf(show_order=150, model="meta_subject.followupexamination"),
263
+ Crf(show_order=155, model="meta_subject.glucose", required=False),
238
264
  Crf(show_order=300, model="meta_subject.studymedication"),
239
265
  Crf(show_order=310, model="meta_subject.medicationadherence"),
240
266
  Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
241
267
  Crf(show_order=465, model="meta_subject.sf12", required=False),
242
- name="36m",
268
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
269
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
270
+ name="39m",
271
+ )
272
+
273
+ crfs_42m = CrfCollection(
274
+ Crf(show_order=100, model="meta_subject.followupvitals"),
275
+ Crf(show_order=150, model="meta_subject.followupexamination"),
276
+ Crf(show_order=155, model="meta_subject.glucose", required=False),
277
+ Crf(show_order=200, model="meta_subject.glucosefbg"),
278
+ Crf(show_order=300, model="meta_subject.studymedication"),
279
+ Crf(show_order=310, model="meta_subject.medicationadherence"),
280
+ Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
281
+ Crf(show_order=465, model="meta_subject.sf12", required=False),
282
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
283
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
284
+ name="42m",
285
+ )
286
+
287
+ crfs_45m = CrfCollection(
288
+ Crf(show_order=100, model="meta_subject.followupvitals"),
289
+ Crf(show_order=150, model="meta_subject.followupexamination"),
290
+ Crf(show_order=155, model="meta_subject.glucose", required=False),
291
+ Crf(show_order=300, model="meta_subject.studymedication"),
292
+ Crf(show_order=310, model="meta_subject.medicationadherence"),
293
+ Crf(show_order=460, model="meta_subject.eq5d3l", required=False),
294
+ Crf(show_order=465, model="meta_subject.sf12", required=False),
295
+ Crf(show_order=470, model="meta_subject.mnsi", required=False),
296
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
297
+ name="45m",
298
+ )
299
+
300
+ crfs_48m = CrfCollection(
301
+ Crf(show_order=100, model="meta_subject.followupvitals"),
302
+ Crf(show_order=150, model="meta_subject.followupexamination"),
303
+ Crf(show_order=200, model="meta_subject.glucose"),
304
+ Crf(show_order=210, model="meta_subject.bloodresultshba1c"),
305
+ Crf(show_order=220, model="meta_subject.bloodresultsrft"),
306
+ Crf(show_order=230, model="meta_subject.bloodresultslft"),
307
+ Crf(show_order=240, model="meta_subject.bloodresultsfbc"),
308
+ Crf(show_order=250, model="meta_subject.bloodresultslipids"),
309
+ Crf(show_order=300, model="meta_subject.studymedication"),
310
+ Crf(show_order=310, model="meta_subject.medicationadherence"),
311
+ Crf(show_order=460, model="meta_subject.eq5d3l"),
312
+ Crf(show_order=465, model="meta_subject.sf12"),
313
+ Crf(show_order=470, model="meta_subject.mnsi"),
314
+ Crf(show_order=500, model="meta_subject.healtheconomicsupdate", required=False),
315
+ name="48m",
243
316
  )
@@ -89,3 +89,15 @@ requisitions_36m = RequisitionCollection(
89
89
  Requisition(show_order=60, panel=fbc_panel, required=True, additional=False),
90
90
  name="requisitions_month36",
91
91
  )
92
+
93
+ requisitions_39m = RequisitionCollection(name="requisitions_month39")
94
+ requisitions_42m = RequisitionCollection(name="requisitions_month42")
95
+ requisitions_45m = RequisitionCollection(name="requisitions_month45")
96
+
97
+ requisitions_48m = RequisitionCollection(
98
+ Requisition(show_order=30, panel=rft_panel, required=True, additional=False),
99
+ Requisition(show_order=40, panel=lft_panel, required=True, additional=False),
100
+ Requisition(show_order=50, panel=lipids_panel, required=True, additional=False),
101
+ Requisition(show_order=60, panel=fbc_panel, required=True, additional=False),
102
+ name="requisitions_month48",
103
+ )
@@ -20,6 +20,10 @@ from ...constants import (
20
20
  MONTH30,
21
21
  MONTH33,
22
22
  MONTH36,
23
+ MONTH39,
24
+ MONTH42,
25
+ MONTH45,
26
+ MONTH48,
23
27
  SCHEDULE,
24
28
  WEEK2,
25
29
  )
@@ -37,6 +41,10 @@ from .crfs import (
37
41
  crfs_30m,
38
42
  crfs_33m,
39
43
  crfs_36m,
44
+ crfs_39m,
45
+ crfs_42m,
46
+ crfs_45m,
47
+ crfs_48m,
40
48
  crfs_d1,
41
49
  crfs_missed,
42
50
  )
@@ -57,6 +65,10 @@ from .requisitions import (
57
65
  requisitions_30m,
58
66
  requisitions_33m,
59
67
  requisitions_36m,
68
+ requisitions_39m,
69
+ requisitions_42m,
70
+ requisitions_45m,
71
+ requisitions_48m,
60
72
  requisitions_d1,
61
73
  )
62
74
  from .requisitions import requisitions_prn as default_requisitions_prn
@@ -89,7 +101,7 @@ class Visit(BaseVisit):
89
101
  # schedule for new participants
90
102
  schedule = Schedule(
91
103
  name=SCHEDULE,
92
- verbose_name="Day 1 to Month 12 Follow-up",
104
+ verbose_name="Day 1 to Month 36/48 Follow-up",
93
105
  onschedule_model="meta_prn.onschedule",
94
106
  offschedule_model="meta_prn.offschedule",
95
107
  consent_definitions=[consent_v1],
@@ -274,12 +286,59 @@ visit36 = Visit(
274
286
  timepoint=14,
275
287
  rbase=relativedelta(months=36),
276
288
  rlower=relativedelta(months=1),
277
- rupper=relativedelta(months=1),
289
+ rupper=relativedelta(months=2),
278
290
  requisitions=requisitions_36m,
279
291
  crfs=crfs_36m,
280
292
  facility_name=FIVE_DAY_CLINIC,
281
293
  )
282
294
 
295
+ visit39 = Visit(
296
+ code=MONTH39,
297
+ title="Month 39",
298
+ timepoint=15,
299
+ rbase=relativedelta(months=39),
300
+ rlower=relativedelta(months=1),
301
+ rupper=relativedelta(months=2),
302
+ requisitions=requisitions_39m,
303
+ crfs=crfs_39m,
304
+ facility_name=FIVE_DAY_CLINIC,
305
+ )
306
+
307
+ visit42 = Visit(
308
+ code=MONTH42,
309
+ title="Month 42",
310
+ timepoint=16,
311
+ rbase=relativedelta(months=42),
312
+ rlower=relativedelta(months=1),
313
+ rupper=relativedelta(months=2),
314
+ requisitions=requisitions_42m,
315
+ crfs=crfs_42m,
316
+ facility_name=FIVE_DAY_CLINIC,
317
+ )
318
+
319
+ visit45 = Visit(
320
+ code=MONTH45,
321
+ title="Month 45",
322
+ timepoint=17,
323
+ rbase=relativedelta(months=45),
324
+ rlower=relativedelta(months=1),
325
+ rupper=relativedelta(months=2),
326
+ requisitions=requisitions_45m,
327
+ crfs=crfs_45m,
328
+ facility_name=FIVE_DAY_CLINIC,
329
+ )
330
+
331
+ visit48 = Visit(
332
+ code=MONTH48,
333
+ title="Month 48",
334
+ timepoint=18,
335
+ rbase=relativedelta(months=48),
336
+ rlower=relativedelta(months=1),
337
+ rupper=relativedelta(months=3),
338
+ requisitions=requisitions_48m,
339
+ crfs=crfs_48m,
340
+ facility_name=FIVE_DAY_CLINIC,
341
+ )
283
342
 
284
343
  visits = [
285
344
  visit000,
@@ -297,6 +356,10 @@ visits = [
297
356
  visit30,
298
357
  visit33,
299
358
  visit36,
359
+ visit39,
360
+ visit42,
361
+ visit45,
362
+ visit48,
300
363
  ]
301
364
  for visit in visits:
302
365
  schedule.add_visit(visit=visit)
@@ -0,0 +1,60 @@
1
+ from dateutil.relativedelta import relativedelta
2
+ from edc_facility.constants import FIVE_DAY_CLINIC
3
+ from edc_visit_schedule.schedule import Schedule
4
+ from edc_visit_schedule.visit import Crf, CrfCollection, Visit
5
+
6
+ from meta_consent.consents import consent_v1
7
+
8
+ from ...constants import DM_BASELINE, DM_FOLLOWUP, SCHEDULE_DM_REFERRAL
9
+ from .crfs import crfs_missed
10
+ from .crfs import crfs_prn
11
+ from .crfs import crfs_prn as default_crfs_prn
12
+
13
+ crfs_baseline = CrfCollection(
14
+ Crf(show_order=100, model="meta_subject.dmendpoint"),
15
+ name="dmbaseline",
16
+ )
17
+ crfs_6m = CrfCollection(
18
+ Crf(show_order=100, model="meta_subject.dmfollowup"),
19
+ name="dmfollowup",
20
+ )
21
+
22
+ schedule = Schedule(
23
+ name=SCHEDULE_DM_REFERRAL,
24
+ verbose_name="Diabetes Referral and Follow-up",
25
+ onschedule_model="meta_prn.onscheduledmreferral",
26
+ offschedule_model="meta_prn.offscheduledmreferral",
27
+ consent_definitions=[consent_v1],
28
+ appointment_model="edc_appointment.appointment",
29
+ base_timepoint=300,
30
+ )
31
+
32
+
33
+ visit_3000 = Visit(
34
+ code=DM_BASELINE,
35
+ title="Diabetes post-referral baseline",
36
+ timepoint=300,
37
+ rbase=relativedelta(days=0),
38
+ rlower=relativedelta(days=0),
39
+ rupper=relativedelta(months=0),
40
+ crfs=crfs_baseline,
41
+ crfs_prn=crfs_prn or default_crfs_prn,
42
+ crfs_missed=crfs_missed,
43
+ facility_name=FIVE_DAY_CLINIC,
44
+ )
45
+ visit_3060 = Visit(
46
+ code=DM_FOLLOWUP,
47
+ title="Diabetes post-referral follow-up",
48
+ timepoint=360,
49
+ rbase=relativedelta(months=6),
50
+ rlower=relativedelta(months=3),
51
+ rupper=relativedelta(months=12),
52
+ crfs=crfs_6m,
53
+ crfs_prn=crfs_prn or default_crfs_prn,
54
+ crfs_missed=crfs_missed,
55
+ facility_name=FIVE_DAY_CLINIC,
56
+ )
57
+
58
+
59
+ schedule.add_visit(visit=visit_3000)
60
+ schedule.add_visit(visit=visit_3060)
@@ -2,6 +2,7 @@ from edc_visit_schedule.visit_schedule import VisitSchedule
2
2
 
3
3
  from ...constants import VISIT_SCHEDULE
4
4
  from .schedule import schedule
5
+ from .schedule_dm_referral import schedule as schedule_dm_referral
5
6
  from .schedule_pregnancy import schedule as schedule_pregnancy
6
7
 
7
8
  visit_schedule = VisitSchedule(
@@ -15,3 +16,4 @@ visit_schedule = VisitSchedule(
15
16
 
16
17
  visit_schedule.add_schedule(schedule)
17
18
  visit_schedule.add_schedule(schedule_pregnancy)
19
+ visit_schedule.add_schedule(schedule_dm_referral)
@@ -238,4 +238,4 @@ sid,assignment,site_name
238
238
  1237,placebo,amana
239
239
  1238,active,amana
240
240
  1239,active,amana
241
- 1240,placebo,amana
241
+ 1240,placebo,amana
@@ -7,7 +7,7 @@ sid,assignment,site_name,gender
7
7
  1006,active,hindu_mandal,M
8
8
  1007,placebo,hindu_mandal,M
9
9
  1008,active,hindu_mandal,F
10
- 1009,placebo,hindu_mandal ,F
10
+ 1009,placebo,hindu_mandal,F
11
11
  1010,active,hindu_mandal,M
12
12
  1011,placebo, hindu_mandal,F
13
13
  1012,active,hindu_mandal,M
@@ -87,9 +87,9 @@ sid,assignment,site_name,gender
87
87
  1086,active,hindu_mandal,M
88
88
  1087,placebo,hindu_mandal,M
89
89
  1088,active,hindu_mandal,F
90
- 1089,placebo,hindu_mandal ,F
90
+ 1089,placebo,hindu_mandal,F
91
91
  1090,active,hindu_mandal,F
92
- 1091,placebo, hindu_mandal,M
92
+ 1091,placebo,hindu_mandal,M
93
93
  1092,active,hindu_mandal,M
94
94
  1093,active,hindu_mandal,M
95
95
  1094,placebo,hindu_mandal,M
@@ -238,4 +238,4 @@ sid,assignment,site_name,gender
238
238
  1237,placebo,amana,F
239
239
  1238,active,amana,M
240
240
  1239,active,amana,F
241
- 1240,placebo,amana,M
241
+ 1240,placebo,amana,M
tests/holidays.csv CHANGED
@@ -12,4 +12,4 @@
12
12
  2019-12-01,Mawlid Day,tanzania
13
13
  2019-12-09,Independence Day,tanzania
14
14
  2019-12-25,Christmas Day,tanzania
15
- 2019-12-26,Boxing Day,tanzania
15
+ 2019-12-26,Boxing Day,tanzania
tests/test_settings.py ADDED
@@ -0,0 +1,186 @@
1
+ #!/usr/bin/env python
2
+ import sys
3
+ from datetime import datetime
4
+ from os.path import join
5
+ from pathlib import Path
6
+ from zoneinfo import ZoneInfo
7
+
8
+ from django.conf import locale
9
+ from edc_constants.internationalization import EXTRA_LANG_INFO
10
+ from edc_test_settings.default_test_settings import DefaultTestSettings
11
+ from multisite import SiteID
12
+
13
+ from meta_edc.meta_version import PHASE_THREE
14
+
15
+ LANG_INFO = dict(locale.LANG_INFO, **EXTRA_LANG_INFO)
16
+ locale.LANG_INFO = LANG_INFO
17
+
18
+
19
+ def get_languages():
20
+ return [(code, LANG_INFO[code]["name"]) for code in ["sw", "en-gb", "en", "mas"]]
21
+
22
+
23
+ app_name = "meta_edc"
24
+ base_dir = Path(__file__).parent.parent
25
+ project_settings = DefaultTestSettings(
26
+ calling_file=__file__,
27
+ META_PHASE=PHASE_THREE,
28
+ BASE_DIR=base_dir,
29
+ APP_NAME=app_name,
30
+ ETC_DIR=base_dir / "tests" / "etc",
31
+ DJANGO_CRYPTO_FIELDS_KEY_PATH=base_dir / "tests" / "etc",
32
+ GIT_DIR=base_dir,
33
+ HOLIDAY_FILE=base_dir / "tests" / "holidays.csv",
34
+ EDC_RANDOMIZATION_LIST_PATH=base_dir / "tests" / "etc",
35
+ SITE_ID=SiteID(default=10),
36
+ EDC_SITES_DOMAIN_SUFFIX="meta3.clinicedc.org",
37
+ EDC_EGFR_DROP_NOTIFICATION_MODEL="meta_subject.egfrdropnotification",
38
+ EDC_RANDOMIZATION_REGISTER_DEFAULT_RANDOMIZER=False,
39
+ EDC_MNSI_ABNORMAL_FOOT_APPEARANCE_OBSERVATIONS_MODEL=(
40
+ "meta_lists.abnormalfootappearanceobservations"
41
+ ),
42
+ EDC_QOL_EQ5D3L_MODEL="meta_subject.eq5d3l",
43
+ ROOT_URLCONF="meta_edc.urls",
44
+ EDC_AUTH_CODENAMES_WARN_ONLY=True,
45
+ EDC_DX_REVIEW_LIST_MODEL_APP_LABEL="edc_dx_review",
46
+ SENTRY_ENABLED=False,
47
+ INDEX_PAGE="localhost:8000",
48
+ EXPORT_FOLDER=join(base_dir, "tests", "export"),
49
+ SUBJECT_APP_LABEL="meta_subject",
50
+ SUBJECT_SCREENING_MODEL="meta_screening.subjectscreening",
51
+ SUBJECT_VISIT_MODEL="meta_subject.subjectvisit",
52
+ SUBJECT_VISIT_MISSED_MODEL="meta_subject.subjectvisitmissed",
53
+ SUBJECT_CONSENT_MODEL="meta_consent.subjectconsentv1",
54
+ SUBJECT_REQUISITION_MODEL="meta_subject.subjectrequisition",
55
+ EDC_BLOOD_RESULTS_MODEL_APP_LABEL="meta_subject",
56
+ DEFENDER_ENABLED=False,
57
+ DJANGO_LAB_DASHBOARD_REQUISITION_MODEL="meta_subject.subjectrequisition",
58
+ ADVERSE_EVENT_ADMIN_SITE="meta_ae_admin",
59
+ EDC_DX_LABELS=dict(hiv="HIV", dm="Diabetes", htn="Hypertension", chol="High Cholesterol"),
60
+ ADVERSE_EVENT_APP_LABEL="meta_ae",
61
+ EDC_NAVBAR_DEFAULT="meta_dashboard",
62
+ EDC_PROTOCOL_STUDY_OPEN_DATETIME=datetime(2019, 4, 30, 0, 0, 0, tzinfo=ZoneInfo("UTC")),
63
+ EDC_PROTOCOL_STUDY_CLOSE_DATETIME=datetime(
64
+ 2025, 12, 31, 23, 59, 59, tzinfo=ZoneInfo("UTC")
65
+ ),
66
+ LANGUAGE_CODE="en",
67
+ LANGUAGES=get_languages(),
68
+ DASHBOARD_BASE_TEMPLATES=dict(
69
+ edc_base_template="edc_dashboard/base.html",
70
+ listboard_base_template="meta_edc/base.html",
71
+ dashboard_base_template="meta_edc/base.html",
72
+ screening_listboard_template="meta_dashboard/screening/listboard.html",
73
+ subject_listboard_template="meta_dashboard/subject/listboard.html",
74
+ subject_dashboard_template="meta_dashboard/subject/dashboard.html",
75
+ subject_review_listboard_template="edc_review_dashboard/subject_review_listboard.html",
76
+ ),
77
+ EDC_BOOTSTRAP=3,
78
+ EMAIL_BACKEND="django.core.mail.backends.locmem.EmailBackend",
79
+ EMAIL_CONTACTS={
80
+ "ae_reports": "someone@example.com",
81
+ "data_request": "someone@example.com",
82
+ "data_manager": "someone@example.com",
83
+ "tmg": "someone@example.com",
84
+ },
85
+ EMAIL_ENABLED=True,
86
+ LIVE_SYSTEM=False,
87
+ EDC_SITES_MODULE_NAME="meta_sites",
88
+ EDC_AUTH_SKIP_SITE_AUTHS=True,
89
+ EDC_AUTH_SKIP_AUTH_UPDATER=True,
90
+ EDC_MNSI_MODEL="meta_subject.mnsi",
91
+ INSTALLED_APPS=[
92
+ "django.contrib.admin",
93
+ "django.contrib.auth",
94
+ "django.contrib.contenttypes",
95
+ "django.contrib.sessions",
96
+ "django.contrib.messages",
97
+ "django.contrib.staticfiles",
98
+ "django.contrib.sites",
99
+ "django_pylabels.apps.AppConfig",
100
+ "django_crypto_fields.apps.AppConfig",
101
+ "django_revision.apps.AppConfig",
102
+ # "debug_toolbar",
103
+ "django_extensions",
104
+ "django_db_views",
105
+ "logentry_admin",
106
+ "simple_history",
107
+ "storages",
108
+ "edc_pylabels.apps.AppConfig",
109
+ "edc_sites.apps.AppConfig",
110
+ "edc_action_item.apps.AppConfig",
111
+ "edc_adherence.apps.AppConfig",
112
+ "edc_adverse_event.apps.AppConfig",
113
+ "edc_appointment.apps.AppConfig",
114
+ "edc_auth.apps.AppConfig",
115
+ "edc_crf.apps.AppConfig",
116
+ "edc_he.apps.AppConfig",
117
+ "edc_data_manager.apps.AppConfig",
118
+ "edc_consent.apps.AppConfig",
119
+ "edc_device.apps.AppConfig",
120
+ "edc_dashboard.apps.AppConfig",
121
+ "edc_egfr.apps.AppConfig",
122
+ "edc_export.apps.AppConfig",
123
+ "edc_facility.apps.AppConfig",
124
+ "edc_fieldsets.apps.AppConfig",
125
+ "edc_form_runners.apps.AppConfig",
126
+ "edc_form_validators.apps.AppConfig",
127
+ "edc_reportable.apps.AppConfig",
128
+ "edc_lab.apps.AppConfig",
129
+ "edc_lab_dashboard.apps.AppConfig",
130
+ "edc_label.apps.AppConfig",
131
+ "edc_listboard.apps.AppConfig",
132
+ "edc_locator.apps.AppConfig",
133
+ "edc_pdf_reports.apps.AppConfig",
134
+ "edc_identifier.apps.AppConfig",
135
+ "edc_metadata.apps.AppConfig",
136
+ "edc_model_admin.apps.AppConfig",
137
+ "edc_navbar.apps.AppConfig",
138
+ "edc_notification.apps.AppConfig",
139
+ "edc_offstudy.apps.AppConfig",
140
+ "edc_visit_tracking.apps.AppConfig",
141
+ "edc_visit_schedule.apps.AppConfig",
142
+ "edc_pdutils.apps.AppConfig",
143
+ "edc_protocol.apps.AppConfig",
144
+ "edc_protocol_incident.apps.AppConfig",
145
+ "edc_prn.apps.AppConfig",
146
+ "edc_randomization.apps.AppConfig",
147
+ "edc_registration.apps.AppConfig",
148
+ "edc_subject_dashboard.apps.AppConfig",
149
+ "edc_screening.apps.AppConfig",
150
+ "edc_timepoint.apps.AppConfig",
151
+ "edc_list_data.apps.AppConfig",
152
+ "edc_review_dashboard.apps.AppConfig",
153
+ "edc_refusal.apps.AppConfig",
154
+ "edc_mnsi.apps.AppConfig",
155
+ "edc_unblinding.apps.AppConfig",
156
+ "edc_qareports.apps.AppConfig",
157
+ "edc_qol.apps.AppConfig",
158
+ "edc_dx_review.apps.AppConfig",
159
+ "edc_dx.apps.AppConfig",
160
+ "edc_pharmacy.apps.AppConfig",
161
+ "meta_auth.apps.AppConfig",
162
+ "meta_consent.apps.AppConfig",
163
+ "meta_lists.apps.AppConfig",
164
+ "meta_dashboard.apps.AppConfig",
165
+ "meta_labs.apps.AppConfig",
166
+ "meta_rando.apps.AppConfig",
167
+ "meta_subject.apps.AppConfig",
168
+ "meta_visit_schedule.apps.AppConfig",
169
+ "meta_ae.apps.AppConfig",
170
+ "meta_prn.apps.AppConfig",
171
+ "meta_export.apps.AppConfig",
172
+ "meta_sites.apps.AppConfig",
173
+ "meta_screening.apps.AppConfig",
174
+ "meta_reports.apps.AppConfig",
175
+ "meta_pharmacy.apps.AppConfig",
176
+ "meta_edc.apps.AppConfig",
177
+ "edc_appconfig.apps.AppConfig",
178
+ ],
179
+ EDC_SITES_CREATE_DEFAULT=False,
180
+ add_dashboard_middleware=True,
181
+ add_lab_dashboard_middleware=True,
182
+ add_adverse_event_dashboard_middleware=True,
183
+ ).settings
184
+
185
+ for k, v in project_settings.items():
186
+ setattr(sys.modules[__name__], k, v)
@@ -1 +0,0 @@
1
- v�m���/%����@���d�����ޝ����P���낮@Y4=]��\ � ���$>�a:&
Binary file