meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl
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- meta_ae/action_items.py +2 -2
- meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
- meta_ae/tests/holidays.csv +1 -1
- meta_analytics/README.rst +17 -0
- meta_analytics/dataframes/__init__.py +19 -0
- meta_analytics/dataframes/constants.py +33 -0
- meta_analytics/dataframes/enrolled/__init__.py +1 -0
- meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
- meta_analytics/dataframes/get_eos_df.py +26 -0
- meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
- meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
- meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
- meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
- meta_analytics/dataframes/screening/__init__.py +2 -0
- meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
- meta_analytics/dataframes/screening/get_screening_df.py +163 -0
- meta_analytics/dataframes/utils.py +65 -0
- meta_analytics/get_tables.py +81 -0
- meta_analytics/tables/__init__.py +2 -0
- meta_analytics/tables/eligible.py +106 -0
- meta_analytics/tables/enrolled/__init__.py +0 -0
- meta_analytics/tables/enrolled/glucose.py +28 -0
- meta_analytics/tables/has_dm.py +61 -0
- meta_analytics/tests/__init__.py +0 -0
- meta_analytics/tests/test_endpoints_by_date.py +94 -0
- meta_auth/auth_objects.py +32 -3
- meta_auth/auths.py +18 -3
- meta_consent/action_items.py +18 -1
- meta_consent/admin/__init__.py +1 -0
- meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
- meta_consent/baker_recipes.py +5 -4
- meta_consent/consents.py +21 -2
- meta_consent/constants.py +1 -0
- meta_consent/forms/__init__.py +1 -0
- meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
- meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
- meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
- meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
- meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
- meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
- meta_consent/models/__init__.py +1 -0
- meta_consent/models/signals.py +34 -13
- meta_consent/models/subject_consent_v1.py +1 -3
- meta_consent/models/subject_consent_v1_ext.py +29 -0
- meta_consent/tests/holidays.csv +1 -1
- meta_consent/tests/tests/test_form_validators.py +1 -1
- meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
- meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
- meta_dashboard/navbars.py +3 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html +4 -4
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html +1 -2
- meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
- meta_dashboard/tests/holidays.csv +1 -1
- meta_dashboard/tests/urls.py +0 -1
- meta_dashboard/view_utils/__init__.py +6 -0
- meta_dashboard/view_utils/subject_screening_button.py +2 -2
- meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
- meta_edc/__init__.py +7 -0
- meta_edc/celery.py +4 -13
- meta_edc/celery_live.py +18 -0
- meta_edc/celery_uat.py +24 -0
- meta_edc/management/commands/update_forms_reference.py +6 -2
- meta_edc/migrations/__init__.py +0 -0
- meta_edc/navbars.py +2 -1
- meta_edc/settings/debug.py +17 -9
- meta_edc/settings/defaults.py +82 -60
- meta_edc/settings/live.py +1 -9
- meta_edc/settings/uat.py +1 -14
- meta_edc/templates/meta_edc/bootstrap3/home.html +13 -7
- meta_edc/tests/tests/test_endpoints.py +22 -19
- meta_edc/urls.py +5 -2
- meta_edc/wsgi.py +1 -1
- meta_edc/wsgi_live.py +1 -1
- meta_edc/wsgi_uat.py +1 -1
- meta_edc-0.3.50.dist-info/AUTHORS +0 -0
- meta_edc-0.3.50.dist-info/METADATA +766 -0
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/RECORD +400 -157
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
- meta_pharmacy/admin/__init__.py +2 -0
- meta_pharmacy/admin/rx_admin.py +75 -0
- meta_pharmacy/admin/substitutions_admin.py +67 -0
- meta_pharmacy/admin_site.py +9 -0
- meta_pharmacy/apps.py +5 -0
- meta_pharmacy/constants.py +10 -0
- meta_pharmacy/forms/__init__.py +2 -0
- meta_pharmacy/forms/rx_form.py +16 -0
- meta_pharmacy/forms/substitutions_form.py +54 -0
- meta_pharmacy/label_configs.py +30 -0
- meta_pharmacy/labels/__init__.py +5 -0
- meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
- meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
- meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
- meta_pharmacy/labels/label_data.py +14 -0
- meta_pharmacy/labels/print_sheets.py +97 -0
- meta_pharmacy/list_data.py +8 -0
- meta_pharmacy/management/__init__.py +0 -0
- meta_pharmacy/management/commands/__init__.py +0 -0
- meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
- meta_pharmacy/migrations/0002_initial.py +695 -0
- meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
- meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
- meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
- meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
- meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
- meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
- meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
- meta_pharmacy/models/__init__.py +3 -0
- meta_pharmacy/models/label_data.py +38 -0
- meta_pharmacy/models/rx.py +18 -0
- meta_pharmacy/models/rx_label.py +39 -0
- meta_pharmacy/models/substitutions.py +88 -0
- meta_pharmacy/urls.py +8 -0
- meta_pharmacy/utils/__init__.py +1 -0
- meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
- meta_prn/action_items.py +52 -2
- meta_prn/admin/__init__.py +3 -0
- meta_prn/admin/dm_referral_admin.py +49 -0
- meta_prn/admin/offschedule_dm_referral_admin.py +47 -0
- meta_prn/admin/onschedule_dm_referral_admin.py +39 -0
- meta_prn/admin/pregnancy_notification_admin.py +6 -2
- meta_prn/baker_recipes.py +8 -1
- meta_prn/choices.py +2 -1
- meta_prn/constants.py +4 -1
- meta_prn/forms/__init__.py +2 -0
- meta_prn/forms/dm_referral_form.py +40 -0
- meta_prn/forms/offschedule_dm_referral_form.py +35 -0
- meta_prn/forms/offschedule_form.py +6 -0
- meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
- meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
- meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +1156 -0
- meta_prn/migrations/0058_dmreferral_referral_note_and_more.py +29 -0
- meta_prn/migrations/0059_alter_historicaloffstudymedication_reason_and_more.py +53 -0
- meta_prn/models/__init__.py +13 -2
- meta_prn/models/dm_referral.py +39 -0
- meta_prn/models/offschedule.py +15 -1
- meta_prn/models/onschedule.py +6 -0
- meta_prn/models/signals.py +41 -1
- meta_prn/tests/tests/test_dm_referral.py +203 -0
- meta_reports/__init__.py +1 -0
- meta_reports/admin/__init__.py +15 -0
- meta_reports/admin/dbviews/__init__.py +14 -0
- meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
- meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
- meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
- meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
- meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
- meta_reports/admin/endpoints_admin.py +14 -0
- meta_reports/admin/endpoints_all_admin.py +13 -0
- meta_reports/admin/last_imp_refill_admin.py +181 -0
- meta_reports/admin/list_filters.py +30 -0
- meta_reports/admin/modeladmin_mixins.py +112 -0
- meta_reports/admin_site.py +5 -0
- meta_reports/apps.py +1 -16
- meta_reports/forms/__init__.py +1 -0
- meta_reports/forms/missing_ogtt_note_form.py +33 -0
- meta_reports/management/__init__.py +0 -0
- meta_reports/management/commands/__init__.py +0 -0
- meta_reports/management/commands/generate_endpoints.py +13 -0
- meta_reports/migrations/0001_initial.py +87 -0
- meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
- meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
- meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
- meta_reports/migrations/0005_endpoints.py +47 -0
- meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
- meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
- meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
- meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
- meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
- meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
- meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
- meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
- meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
- meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
- meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
- meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
- meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
- meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
- meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
- meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
- meta_reports/migrations/0024_glucosesummary.py +38 -0
- meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
- meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
- meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
- meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
- meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
- meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
- meta_reports/migrations/0031_endpointsproxy.py +25 -0
- meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
- meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
- meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
- meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
- meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
- meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
- meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
- meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
- meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
- meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
- meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
- meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
- meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
- meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
- meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
- meta_reports/migrations/0047_impsubstitutions.py +56 -0
- meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
- meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
- meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
- meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
- meta_reports/migrations/0052_lastimpvisit.py +57 -0
- meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
- meta_reports/models/__init__.py +16 -0
- meta_reports/models/dbviews/README +14 -0
- meta_reports/models/dbviews/__init__.py +9 -0
- meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
- meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
- meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
- meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
- meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
- meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
- meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
- meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
- meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
- meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
- meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
- meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
- meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
- meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
- meta_reports/models/endpoints.py +31 -0
- meta_reports/models/endpoints_proxy.py +11 -0
- meta_reports/models/last_imp_refill.py +34 -0
- meta_reports/tasks.py +12 -0
- meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
- meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
- meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
- meta_reports/tests/test_sql_gen.py +5 -0
- meta_reports/urls.py +8 -0
- meta_reports/utils.py +0 -0
- meta_screening/admin/subject_screening_admin.py +1 -0
- meta_screening/form_validators/screening_part_two.py +1 -1
- meta_screening/migrations/0062_remove_icpreferral_site_and_more.py +27 -0
- meta_screening/migrations/0063_alter_historicalscreeningpartone_fasting_duration_str_and_more.py +184 -0
- meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
- meta_screening/migrations/0065_auto_20240516_0352.py +31 -0
- meta_screening/migrations/0066_alter_historicalscreeningpartone_fasting_duration_delta_and_more.py +103 -0
- meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
- meta_screening/models/__init__.py +1 -1
- meta_screening/tests/holidays.csv +1 -1
- meta_screening/tests/meta_test_case_mixin.py +17 -2
- meta_screening/tests/options.py +3 -3
- meta_sites/__init__.py +0 -1
- meta_sites/sites.py +8 -7
- meta_sites/tests/test_sites.py +1 -1
- meta_subject/action_items.py +25 -2
- meta_subject/admin/__init__.py +2 -1
- meta_subject/admin/birth_outcome_admin.py +4 -3
- meta_subject/admin/blood_results/__init__.py +1 -1
- meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
- meta_subject/admin/delivery_admin.py +0 -1
- meta_subject/admin/diabetes/__init__.py +2 -0
- meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
- meta_subject/admin/{dm_referral_followup_admin.py → diabetes/dm_followup_admin.py} +15 -8
- meta_subject/admin/glucose_admin.py +1 -1
- meta_subject/admin/glucose_fbg_admin.py +38 -8
- meta_subject/admin/other_arv_regimens_admin.py +2 -0
- meta_subject/admin/study_medication_admin.py +10 -0
- meta_subject/admin/subject_visit_admin.py +4 -1
- meta_subject/baker_recipes.py +6 -0
- meta_subject/choices.py +8 -0
- meta_subject/constants.py +2 -1
- meta_subject/form_validators/__init__.py +2 -1
- meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
- meta_subject/form_validators/{dm_referral_followup_form_validator.py → dm_followup_form_validator.py} +41 -2
- meta_subject/forms/__init__.py +2 -1
- meta_subject/forms/blood_results/__init__.py +1 -1
- meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
- meta_subject/forms/diabetes/__init__.py +2 -0
- meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
- meta_subject/forms/diabetes/dm_followup_form.py +25 -0
- meta_subject/forms/glucose_fbg_form.py +38 -16
- meta_subject/forms/study_medication_form.py +35 -0
- meta_subject/forms/subject_visit_form.py +16 -0
- meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
- meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
- meta_subject/metadata_rules/metadata_rules.py +21 -0
- meta_subject/metadata_rules/predicates.py +67 -8
- meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
- meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
- meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
- meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
- meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
- meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
- meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
- meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
- meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
- meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
- meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
- meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +55 -0
- meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +451 -0
- meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +403 -0
- meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
- meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
- meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
- meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
- meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
- meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
- meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
- meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
- meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
- meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
- meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
- meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
- meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
- meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
- meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
- meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
- meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
- meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
- meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
- meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
- meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
- meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
- meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
- meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
- meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
- meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
- meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
- meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
- meta_subject/models/__init__.py +3 -2
- meta_subject/models/birth_outcomes.py +6 -1
- meta_subject/models/blood_results/__init__.py +1 -1
- meta_subject/models/blood_results/blood_results_fbc.py +3 -2
- meta_subject/models/blood_results/blood_results_hba1c.py +2 -0
- meta_subject/models/blood_results/blood_results_ins.py +2 -0
- meta_subject/models/blood_results/blood_results_lft.py +2 -0
- meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +5 -3
- meta_subject/models/blood_results/blood_results_rft.py +2 -0
- meta_subject/models/diabetes/__init__.py +2 -0
- meta_subject/models/diabetes/dm_endpoint.py +61 -0
- meta_subject/models/{dm_referral_followup.py → diabetes/dm_followup.py} +18 -6
- meta_subject/models/glucose.py +7 -14
- meta_subject/models/glucose_fbg.py +40 -51
- meta_subject/models/health_economics/health_economics_update.py +2 -0
- meta_subject/models/physical_exam.py +1 -0
- meta_subject/models/signals.py +19 -0
- meta_subject/models/subject_requisition.py +3 -4
- meta_subject/models/todo.txt +1 -1
- meta_subject/static/meta_subject/slider.css +1 -1
- meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
- meta_subject/templates/meta_subject/widgets/slider.html +0 -1
- meta_subject/tests/holidays.csv +1 -1
- meta_subject/tests/tests/test_egfr.py +6 -5
- meta_subject/tests/tests/test_medication_adherence.py +5 -1
- meta_subject/tests/tests/test_metadata_rules.py +34 -4
- meta_subject/tests/tests/test_mnsi.py +212 -121
- meta_subject/tests/tests/test_sf12.py +0 -12
- meta_visit_schedule/constants.py +7 -1
- meta_visit_schedule/tests/tests/test_schedule.py +4 -0
- meta_visit_schedule/visit_schedules/phase_three/crfs.py +87 -14
- meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
- meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +60 -0
- meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +2 -0
- tests/etc/randomization_list.csv +1 -1
- {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
- tests/holidays.csv +1 -1
- tests/test_settings.py +186 -0
- meta_edc/tests/etc/user-aes-local.key +0 -1
- meta_edc/tests/etc/user-aes-restricted.key +0 -0
- meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
- meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
- meta_edc/tests/etc/user-salt-local.key +0 -0
- meta_edc/tests/etc/user-salt-restricted.key +0 -0
- meta_edc-0.3.7.dist-info/METADATA +0 -87
- meta_reports/tests/holidays.csv +0 -15
- meta_subject/forms/dm_referral_followup.py +0 -18
- /meta_edc-0.3.7.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
- /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
- /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
- {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
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# Generated by Django 5.0.8 on 2024-08-22 19:34
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from django.db import migrations
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class Migration(migrations.Migration):
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dependencies = [
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("meta_reports", "0030_auto_20240822_1637"),
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]
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operations = [
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migrations.CreateModel(
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name="EndpointsProxy",
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fields=[],
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options={
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"verbose_name": "Endpoints (DM): All",
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"verbose_name_plural": "Endpoints (DM): All",
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"proxy": True,
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"indexes": [],
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"constraints": [],
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},
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bases=("meta_reports.endpoints",),
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),
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]
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# Generated by Django 5.0.8 on 2024-08-22 19:36
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from django.db import migrations
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class Migration(migrations.Migration):
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dependencies = [
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("meta_reports", "0031_endpointsproxy"),
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]
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operations = [
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migrations.AlterModelOptions(
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name="endpointsproxy",
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options={
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"default_permissions": ("view", "export", "viewallsites"),
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"verbose_name": "Endpoints (DM): All",
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"verbose_name_plural": "Endpoints (DM): All",
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},
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),
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]
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# Generated by Django 5.0.8 on 2024-08-22 21:12
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import django_db_views.migration_functions
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import django_db_views.operations
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from django.db import migrations
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class Migration(migrations.Migration):
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dependencies = [
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("meta_reports", "0032_alter_endpointsproxy_options"),
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]
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operations = [
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django_db_views.operations.ViewRunPython(
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code=django_db_views.migration_functions.ForwardViewMigration(
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'# noqa\nselect *, uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as \'ogtt_value\', null as \'ogtt_datetime\',\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.mysql",
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),
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reverse_code=django_db_views.migration_functions.BackwardViewMigration(
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'# noqa\nselect *, uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as \'ogtt_value\', null as \'ogtt_datetime\',\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.mysql",
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),
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atomic=False,
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),
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django_db_views.operations.ViewRunPython(
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code=django_db_views.migration_functions.ForwardViewMigration(
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'# noqa\nselect *, get_random_uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.postgresql",
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),
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reverse_code=django_db_views.migration_functions.BackwardViewMigration(
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'# noqa\nselect *, get_random_uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.postgresql",
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),
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atomic=False,
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django_db_views.operations.ViewRunPython(
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code=django_db_views.migration_functions.ForwardViewMigration(
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'# noqa\nSELECT *, lower(\n hex(randomblob(4)) || \'-\' || hex(randomblob(2)) || \'-\' || \'4\' ||\n substr(hex( randomblob(2)), 2) || \'-\' ||\n substr(\'AB89\', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || \'-\' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier \n ) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.sqlite3",
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),
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reverse_code=django_db_views.migration_functions.BackwardViewMigration(
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'# noqa\nSELECT *, lower(\n hex(randomblob(4)) || \'-\' || hex(randomblob(2)) || \'-\' || \'4\' ||\n substr(hex( randomblob(2)), 2) || \'-\' ||\n substr(\'AB89\', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || \'-\' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
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"glucose_summary_view",
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engine="django.db.backends.sqlite3",
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atomic=False,
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),
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]
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# Generated by Django 5.0.8 on 2024-08-23 13:42
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import django_db_views.migration_functions
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import django_db_views.operations
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from django.db import migrations
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class Migration(migrations.Migration):
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dependencies = [
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("meta_reports", "0033_auto_20240823_0012"),
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]
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operations = [
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django_db_views.operations.ViewRunPython(
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code=django_db_views.migration_functions.ForwardViewMigration(
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"# noqa\n select *, uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
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"missing_screening_ogtt_view",
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engine="django.db.backends.mysql",
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),
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reverse_code=django_db_views.migration_functions.BackwardViewMigration(
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"# noqa\n select *, uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
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"missing_screening_ogtt_view",
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engine="django.db.backends.mysql",
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atomic=False,
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),
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django_db_views.operations.ViewRunPython(
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code=django_db_views.migration_functions.ForwardViewMigration(
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"# noqa\n select *, get_random_uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
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"missing_screening_ogtt_view",
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engine="django.db.backends.postgresql",
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),
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reverse_code=django_db_views.migration_functions.BackwardViewMigration(
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"# noqa\n select *, get_random_uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
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"missing_screening_ogtt_view",
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engine="django.db.backends.postgresql",
|
38
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+
),
|
39
|
+
atomic=False,
|
40
|
+
),
|
41
|
+
django_db_views.operations.ViewRunPython(
|
42
|
+
code=django_db_views.migration_functions.ForwardViewMigration(
|
43
|
+
"# noqa\nSELECT *, lower(\n hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||\n substr(hex( randomblob(2)), 2) || '-' ||\n substr('AB89', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || '-' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, fbg2_value, ogtt2_value,\n repeat_glucose_performed as repeated, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
|
44
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+
"missing_screening_ogtt_view",
|
45
|
+
engine="django.db.backends.sqlite3",
|
46
|
+
),
|
47
|
+
reverse_code=django_db_views.migration_functions.BackwardViewMigration(
|
48
|
+
"# noqa\nSELECT *, lower(\n hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||\n substr(hex( randomblob(2)), 2) || '-' ||\n substr('AB89', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || '-' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, fbg2_value, ogtt2_value,\n repeat_glucose_performed as repeated, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
|
49
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+
"missing_screening_ogtt_view",
|
50
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+
engine="django.db.backends.sqlite3",
|
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+
),
|
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+
atomic=False,
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+
),
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+
]
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@@ -0,0 +1,457 @@
|
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1
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+
# Generated by Django 5.0.8 on 2024-08-23 13:59
|
2
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+
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3
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+
import _socket
|
4
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+
import django.db.models.deletion
|
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+
import django.db.models.manager
|
6
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+
import django_audit_fields.fields.hostname_modification_field
|
7
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+
import django_audit_fields.fields.userfield
|
8
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+
import django_audit_fields.fields.uuid_auto_field
|
9
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+
import django_audit_fields.models.audit_model_mixin
|
10
|
+
import django_revision.revision_field
|
11
|
+
import edc_model.validators.date
|
12
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+
import edc_sites.managers
|
13
|
+
import edc_utils.date
|
14
|
+
import simple_history.models
|
15
|
+
import uuid
|
16
|
+
from django.conf import settings
|
17
|
+
from django.db import migrations, models
|
18
|
+
|
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+
|
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+
class Migration(migrations.Migration):
|
21
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+
|
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|
+
dependencies = [
|
23
|
+
("meta_reports", "0034_auto_20240823_1642"),
|
24
|
+
("sites", "0002_alter_domain_unique"),
|
25
|
+
migrations.swappable_dependency(settings.AUTH_USER_MODEL),
|
26
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+
]
|
27
|
+
|
28
|
+
operations = [
|
29
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+
migrations.CreateModel(
|
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+
name="HistoricalMissingOgttNote",
|
31
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+
fields=[
|
32
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+
(
|
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+
"revision",
|
34
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+
django_revision.revision_field.RevisionField(
|
35
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+
blank=True,
|
36
|
+
editable=False,
|
37
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+
help_text="System field. Git repository tag:branch:commit.",
|
38
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+
max_length=75,
|
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+
null=True,
|
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+
verbose_name="Revision",
|
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+
),
|
42
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+
),
|
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+
(
|
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+
"created",
|
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+
models.DateTimeField(
|
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+
blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
|
47
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+
),
|
48
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+
),
|
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+
(
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+
"modified",
|
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+
models.DateTimeField(
|
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+
blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
|
53
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+
),
|
54
|
+
),
|
55
|
+
(
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+
"user_created",
|
57
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+
django_audit_fields.fields.userfield.UserField(
|
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+
blank=True,
|
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+
help_text="Updated by admin.save_model",
|
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+
max_length=50,
|
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verbose_name="user created",
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+
),
|
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+
),
|
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+
(
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"user_modified",
|
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+
django_audit_fields.fields.userfield.UserField(
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blank=True,
|
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+
help_text="Updated by admin.save_model",
|
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+
max_length=50,
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verbose_name="user modified",
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+
),
|
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+
),
|
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+
(
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+
"hostname_created",
|
75
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+
models.CharField(
|
76
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+
blank=True,
|
77
|
+
default=_socket.gethostname,
|
78
|
+
help_text="System field. (modified on create only)",
|
79
|
+
max_length=60,
|
80
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+
verbose_name="Hostname created",
|
81
|
+
),
|
82
|
+
),
|
83
|
+
(
|
84
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+
"hostname_modified",
|
85
|
+
django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
|
86
|
+
blank=True,
|
87
|
+
help_text="System field. (modified on every save)",
|
88
|
+
max_length=50,
|
89
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+
verbose_name="Hostname modified",
|
90
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+
),
|
91
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+
),
|
92
|
+
(
|
93
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+
"device_created",
|
94
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
95
|
+
),
|
96
|
+
(
|
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+
"device_modified",
|
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+
models.CharField(
|
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+
blank=True, max_length=10, verbose_name="Device modified"
|
100
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+
),
|
101
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+
),
|
102
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+
(
|
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+
"locale_created",
|
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+
models.CharField(
|
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|
+
blank=True,
|
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|
+
help_text="Auto-updated by Modeladmin",
|
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+
max_length=10,
|
108
|
+
null=True,
|
109
|
+
verbose_name="Locale created",
|
110
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+
),
|
111
|
+
),
|
112
|
+
(
|
113
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+
"locale_modified",
|
114
|
+
models.CharField(
|
115
|
+
blank=True,
|
116
|
+
help_text="Auto-updated by Modeladmin",
|
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+
max_length=10,
|
118
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+
null=True,
|
119
|
+
verbose_name="Locale modified",
|
120
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+
),
|
121
|
+
),
|
122
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+
(
|
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+
"id",
|
124
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+
django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
|
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|
+
blank=True,
|
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|
+
db_index=True,
|
127
|
+
editable=False,
|
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|
+
help_text="System auto field. UUID primary key.",
|
129
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+
),
|
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|
+
),
|
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|
+
("subject_identifier", models.CharField(db_index=True, max_length=50)),
|
132
|
+
("report_model", models.CharField(max_length=150)),
|
133
|
+
("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
|
134
|
+
("note", models.TextField(blank=True, null=True)),
|
135
|
+
(
|
136
|
+
"ogtt_base_datetime",
|
137
|
+
models.DateTimeField(
|
138
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+
blank=True,
|
139
|
+
help_text="(glucose solution given)",
|
140
|
+
null=True,
|
141
|
+
validators=[edc_model.validators.date.datetime_not_future],
|
142
|
+
verbose_name="Date/time oral glucose solution given",
|
143
|
+
),
|
144
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+
),
|
145
|
+
(
|
146
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+
"ogtt_value",
|
147
|
+
models.DecimalField(
|
148
|
+
blank=True,
|
149
|
+
decimal_places=2,
|
150
|
+
help_text="A `HIGH` reading may be entered as 9999.99",
|
151
|
+
max_digits=8,
|
152
|
+
null=True,
|
153
|
+
verbose_name="Blood glucose measure 2hrs <u>after</u> oral glucose solution given",
|
154
|
+
),
|
155
|
+
),
|
156
|
+
(
|
157
|
+
"ogtt_quantifier",
|
158
|
+
models.CharField(
|
159
|
+
choices=[
|
160
|
+
("=", "="),
|
161
|
+
(">", ">"),
|
162
|
+
(">=", ">="),
|
163
|
+
("<", "<"),
|
164
|
+
("<=", "<="),
|
165
|
+
],
|
166
|
+
default="=",
|
167
|
+
max_length=10,
|
168
|
+
),
|
169
|
+
),
|
170
|
+
(
|
171
|
+
"ogtt_units",
|
172
|
+
models.CharField(
|
173
|
+
choices=[
|
174
|
+
("mg/dL", "mg/dL"),
|
175
|
+
("mmol/L", "mmol/L (millimoles/L)"),
|
176
|
+
("N/A", "Not applicable"),
|
177
|
+
],
|
178
|
+
default="N/A",
|
179
|
+
max_length=15,
|
180
|
+
verbose_name="Units (Blood glucose 2hrs after...)",
|
181
|
+
),
|
182
|
+
),
|
183
|
+
(
|
184
|
+
"ogtt_datetime",
|
185
|
+
models.DateTimeField(
|
186
|
+
blank=True,
|
187
|
+
help_text="(2 hours after glucose solution given)",
|
188
|
+
null=True,
|
189
|
+
validators=[edc_model.validators.date.datetime_not_future],
|
190
|
+
verbose_name="Date/time blood glucose measured 2hrs <u>after</u> oral glucose solution given",
|
191
|
+
),
|
192
|
+
),
|
193
|
+
(
|
194
|
+
"status",
|
195
|
+
models.CharField(
|
196
|
+
choices=[
|
197
|
+
("done", "Done"),
|
198
|
+
("PENDING", "Data is pending"),
|
199
|
+
("not_available", "Data not available"),
|
200
|
+
],
|
201
|
+
default="done",
|
202
|
+
max_length=25,
|
203
|
+
),
|
204
|
+
),
|
205
|
+
(
|
206
|
+
"history_id",
|
207
|
+
models.UUIDField(
|
208
|
+
default=uuid.uuid4, editable=False, primary_key=True, serialize=False
|
209
|
+
),
|
210
|
+
),
|
211
|
+
("history_date", models.DateTimeField(db_index=True)),
|
212
|
+
("history_change_reason", models.CharField(max_length=100, null=True)),
|
213
|
+
(
|
214
|
+
"history_type",
|
215
|
+
models.CharField(
|
216
|
+
choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
|
217
|
+
max_length=1,
|
218
|
+
),
|
219
|
+
),
|
220
|
+
(
|
221
|
+
"history_user",
|
222
|
+
models.ForeignKey(
|
223
|
+
null=True,
|
224
|
+
on_delete=django.db.models.deletion.SET_NULL,
|
225
|
+
related_name="+",
|
226
|
+
to=settings.AUTH_USER_MODEL,
|
227
|
+
),
|
228
|
+
),
|
229
|
+
(
|
230
|
+
"site",
|
231
|
+
models.ForeignKey(
|
232
|
+
blank=True,
|
233
|
+
db_constraint=False,
|
234
|
+
null=True,
|
235
|
+
on_delete=django.db.models.deletion.DO_NOTHING,
|
236
|
+
related_name="+",
|
237
|
+
to="sites.site",
|
238
|
+
),
|
239
|
+
),
|
240
|
+
],
|
241
|
+
options={
|
242
|
+
"verbose_name": "historical Screening: Missing OGTT Note",
|
243
|
+
"verbose_name_plural": "historical Screening: Missing OGTT Notes",
|
244
|
+
"ordering": ("-history_date", "-history_id"),
|
245
|
+
"get_latest_by": ("history_date", "history_id"),
|
246
|
+
},
|
247
|
+
bases=(simple_history.models.HistoricalChanges, models.Model),
|
248
|
+
),
|
249
|
+
migrations.CreateModel(
|
250
|
+
name="MissingOgttNote",
|
251
|
+
fields=[
|
252
|
+
(
|
253
|
+
"revision",
|
254
|
+
django_revision.revision_field.RevisionField(
|
255
|
+
blank=True,
|
256
|
+
editable=False,
|
257
|
+
help_text="System field. Git repository tag:branch:commit.",
|
258
|
+
max_length=75,
|
259
|
+
null=True,
|
260
|
+
verbose_name="Revision",
|
261
|
+
),
|
262
|
+
),
|
263
|
+
(
|
264
|
+
"created",
|
265
|
+
models.DateTimeField(
|
266
|
+
blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
|
267
|
+
),
|
268
|
+
),
|
269
|
+
(
|
270
|
+
"modified",
|
271
|
+
models.DateTimeField(
|
272
|
+
blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
|
273
|
+
),
|
274
|
+
),
|
275
|
+
(
|
276
|
+
"user_created",
|
277
|
+
django_audit_fields.fields.userfield.UserField(
|
278
|
+
blank=True,
|
279
|
+
help_text="Updated by admin.save_model",
|
280
|
+
max_length=50,
|
281
|
+
verbose_name="user created",
|
282
|
+
),
|
283
|
+
),
|
284
|
+
(
|
285
|
+
"user_modified",
|
286
|
+
django_audit_fields.fields.userfield.UserField(
|
287
|
+
blank=True,
|
288
|
+
help_text="Updated by admin.save_model",
|
289
|
+
max_length=50,
|
290
|
+
verbose_name="user modified",
|
291
|
+
),
|
292
|
+
),
|
293
|
+
(
|
294
|
+
"hostname_created",
|
295
|
+
models.CharField(
|
296
|
+
blank=True,
|
297
|
+
default=_socket.gethostname,
|
298
|
+
help_text="System field. (modified on create only)",
|
299
|
+
max_length=60,
|
300
|
+
verbose_name="Hostname created",
|
301
|
+
),
|
302
|
+
),
|
303
|
+
(
|
304
|
+
"hostname_modified",
|
305
|
+
django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
|
306
|
+
blank=True,
|
307
|
+
help_text="System field. (modified on every save)",
|
308
|
+
max_length=50,
|
309
|
+
verbose_name="Hostname modified",
|
310
|
+
),
|
311
|
+
),
|
312
|
+
(
|
313
|
+
"device_created",
|
314
|
+
models.CharField(blank=True, max_length=10, verbose_name="Device created"),
|
315
|
+
),
|
316
|
+
(
|
317
|
+
"device_modified",
|
318
|
+
models.CharField(
|
319
|
+
blank=True, max_length=10, verbose_name="Device modified"
|
320
|
+
),
|
321
|
+
),
|
322
|
+
(
|
323
|
+
"locale_created",
|
324
|
+
models.CharField(
|
325
|
+
blank=True,
|
326
|
+
help_text="Auto-updated by Modeladmin",
|
327
|
+
max_length=10,
|
328
|
+
null=True,
|
329
|
+
verbose_name="Locale created",
|
330
|
+
),
|
331
|
+
),
|
332
|
+
(
|
333
|
+
"locale_modified",
|
334
|
+
models.CharField(
|
335
|
+
blank=True,
|
336
|
+
help_text="Auto-updated by Modeladmin",
|
337
|
+
max_length=10,
|
338
|
+
null=True,
|
339
|
+
verbose_name="Locale modified",
|
340
|
+
),
|
341
|
+
),
|
342
|
+
(
|
343
|
+
"id",
|
344
|
+
django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
|
345
|
+
blank=True,
|
346
|
+
editable=False,
|
347
|
+
help_text="System auto field. UUID primary key.",
|
348
|
+
primary_key=True,
|
349
|
+
serialize=False,
|
350
|
+
),
|
351
|
+
),
|
352
|
+
("subject_identifier", models.CharField(max_length=50, unique=True)),
|
353
|
+
("report_model", models.CharField(max_length=150)),
|
354
|
+
("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
|
355
|
+
("note", models.TextField(blank=True, null=True)),
|
356
|
+
(
|
357
|
+
"ogtt_base_datetime",
|
358
|
+
models.DateTimeField(
|
359
|
+
blank=True,
|
360
|
+
help_text="(glucose solution given)",
|
361
|
+
null=True,
|
362
|
+
validators=[edc_model.validators.date.datetime_not_future],
|
363
|
+
verbose_name="Date/time oral glucose solution given",
|
364
|
+
),
|
365
|
+
),
|
366
|
+
(
|
367
|
+
"ogtt_value",
|
368
|
+
models.DecimalField(
|
369
|
+
blank=True,
|
370
|
+
decimal_places=2,
|
371
|
+
help_text="A `HIGH` reading may be entered as 9999.99",
|
372
|
+
max_digits=8,
|
373
|
+
null=True,
|
374
|
+
verbose_name="Blood glucose measure 2hrs <u>after</u> oral glucose solution given",
|
375
|
+
),
|
376
|
+
),
|
377
|
+
(
|
378
|
+
"ogtt_quantifier",
|
379
|
+
models.CharField(
|
380
|
+
choices=[
|
381
|
+
("=", "="),
|
382
|
+
(">", ">"),
|
383
|
+
(">=", ">="),
|
384
|
+
("<", "<"),
|
385
|
+
("<=", "<="),
|
386
|
+
],
|
387
|
+
default="=",
|
388
|
+
max_length=10,
|
389
|
+
),
|
390
|
+
),
|
391
|
+
(
|
392
|
+
"ogtt_units",
|
393
|
+
models.CharField(
|
394
|
+
choices=[
|
395
|
+
("mg/dL", "mg/dL"),
|
396
|
+
("mmol/L", "mmol/L (millimoles/L)"),
|
397
|
+
("N/A", "Not applicable"),
|
398
|
+
],
|
399
|
+
default="N/A",
|
400
|
+
max_length=15,
|
401
|
+
verbose_name="Units (Blood glucose 2hrs after...)",
|
402
|
+
),
|
403
|
+
),
|
404
|
+
(
|
405
|
+
"ogtt_datetime",
|
406
|
+
models.DateTimeField(
|
407
|
+
blank=True,
|
408
|
+
help_text="(2 hours after glucose solution given)",
|
409
|
+
null=True,
|
410
|
+
validators=[edc_model.validators.date.datetime_not_future],
|
411
|
+
verbose_name="Date/time blood glucose measured 2hrs <u>after</u> oral glucose solution given",
|
412
|
+
),
|
413
|
+
),
|
414
|
+
(
|
415
|
+
"status",
|
416
|
+
models.CharField(
|
417
|
+
choices=[
|
418
|
+
("done", "Done"),
|
419
|
+
("PENDING", "Data is pending"),
|
420
|
+
("not_available", "Data not available"),
|
421
|
+
],
|
422
|
+
default="done",
|
423
|
+
max_length=25,
|
424
|
+
),
|
425
|
+
),
|
426
|
+
(
|
427
|
+
"site",
|
428
|
+
models.ForeignKey(
|
429
|
+
null=True,
|
430
|
+
on_delete=django.db.models.deletion.PROTECT,
|
431
|
+
related_name="+",
|
432
|
+
to="sites.site",
|
433
|
+
),
|
434
|
+
),
|
435
|
+
],
|
436
|
+
options={
|
437
|
+
"verbose_name": "Screening: Missing OGTT Note",
|
438
|
+
"verbose_name_plural": "Screening: Missing OGTT Notes",
|
439
|
+
"abstract": False,
|
440
|
+
"default_permissions": ("add", "change", "delete", "view", "export", "import"),
|
441
|
+
"default_manager_name": "objects",
|
442
|
+
"indexes": [
|
443
|
+
models.Index(
|
444
|
+
fields=["modified", "created"], name="meta_report_modifie_4a4894_idx"
|
445
|
+
),
|
446
|
+
models.Index(
|
447
|
+
fields=["user_modified", "user_created"],
|
448
|
+
name="meta_report_user_mo_5b8129_idx",
|
449
|
+
),
|
450
|
+
],
|
451
|
+
},
|
452
|
+
managers=[
|
453
|
+
("on_site", edc_sites.managers.CurrentSiteManager()),
|
454
|
+
("objects", django.db.models.manager.Manager()),
|
455
|
+
],
|
456
|
+
),
|
457
|
+
]
|