meta-edc 0.3.7__py3-none-any.whl → 0.3.50__py3-none-any.whl

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Files changed (411) hide show
  1. meta_ae/action_items.py +2 -2
  2. meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
  3. meta_ae/tests/holidays.csv +1 -1
  4. meta_analytics/README.rst +17 -0
  5. meta_analytics/dataframes/__init__.py +19 -0
  6. meta_analytics/dataframes/constants.py +33 -0
  7. meta_analytics/dataframes/enrolled/__init__.py +1 -0
  8. meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
  9. meta_analytics/dataframes/get_eos_df.py +26 -0
  10. meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
  11. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  12. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
  13. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
  14. meta_analytics/dataframes/screening/__init__.py +2 -0
  15. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
  16. meta_analytics/dataframes/screening/get_screening_df.py +163 -0
  17. meta_analytics/dataframes/utils.py +65 -0
  18. meta_analytics/get_tables.py +81 -0
  19. meta_analytics/tables/__init__.py +2 -0
  20. meta_analytics/tables/eligible.py +106 -0
  21. meta_analytics/tables/enrolled/__init__.py +0 -0
  22. meta_analytics/tables/enrolled/glucose.py +28 -0
  23. meta_analytics/tables/has_dm.py +61 -0
  24. meta_analytics/tests/__init__.py +0 -0
  25. meta_analytics/tests/test_endpoints_by_date.py +94 -0
  26. meta_auth/auth_objects.py +32 -3
  27. meta_auth/auths.py +18 -3
  28. meta_consent/action_items.py +18 -1
  29. meta_consent/admin/__init__.py +1 -0
  30. meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
  31. meta_consent/baker_recipes.py +5 -4
  32. meta_consent/consents.py +21 -2
  33. meta_consent/constants.py +1 -0
  34. meta_consent/forms/__init__.py +1 -0
  35. meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
  36. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  37. meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
  38. meta_consent/migrations/0025_alter_historicalsubjectconsent_first_name_and_more.py +151 -0
  39. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
  40. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  41. meta_consent/models/__init__.py +1 -0
  42. meta_consent/models/signals.py +34 -13
  43. meta_consent/models/subject_consent_v1.py +1 -3
  44. meta_consent/models/subject_consent_v1_ext.py +29 -0
  45. meta_consent/tests/holidays.csv +1 -1
  46. meta_consent/tests/tests/test_form_validators.py +1 -1
  47. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  48. meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
  49. meta_dashboard/navbars.py +3 -1
  50. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
  51. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
  52. meta_dashboard/templates/meta_dashboard/bootstrap3/screening/listboard.html +4 -4
  53. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
  54. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
  55. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/listboard.html +1 -2
  56. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  57. meta_dashboard/tests/holidays.csv +1 -1
  58. meta_dashboard/tests/urls.py +0 -1
  59. meta_dashboard/view_utils/__init__.py +6 -0
  60. meta_dashboard/view_utils/subject_screening_button.py +2 -2
  61. meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
  62. meta_edc/__init__.py +7 -0
  63. meta_edc/celery.py +4 -13
  64. meta_edc/celery_live.py +18 -0
  65. meta_edc/celery_uat.py +24 -0
  66. meta_edc/management/commands/update_forms_reference.py +6 -2
  67. meta_edc/migrations/__init__.py +0 -0
  68. meta_edc/navbars.py +2 -1
  69. meta_edc/settings/debug.py +17 -9
  70. meta_edc/settings/defaults.py +82 -60
  71. meta_edc/settings/live.py +1 -9
  72. meta_edc/settings/uat.py +1 -14
  73. meta_edc/templates/meta_edc/bootstrap3/home.html +13 -7
  74. meta_edc/tests/tests/test_endpoints.py +22 -19
  75. meta_edc/urls.py +5 -2
  76. meta_edc/wsgi.py +1 -1
  77. meta_edc/wsgi_live.py +1 -1
  78. meta_edc/wsgi_uat.py +1 -1
  79. meta_edc-0.3.50.dist-info/AUTHORS +0 -0
  80. meta_edc-0.3.50.dist-info/METADATA +766 -0
  81. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/RECORD +400 -157
  82. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
  83. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
  84. meta_pharmacy/admin/__init__.py +2 -0
  85. meta_pharmacy/admin/rx_admin.py +75 -0
  86. meta_pharmacy/admin/substitutions_admin.py +67 -0
  87. meta_pharmacy/admin_site.py +9 -0
  88. meta_pharmacy/apps.py +5 -0
  89. meta_pharmacy/constants.py +10 -0
  90. meta_pharmacy/forms/__init__.py +2 -0
  91. meta_pharmacy/forms/rx_form.py +16 -0
  92. meta_pharmacy/forms/substitutions_form.py +54 -0
  93. meta_pharmacy/label_configs.py +30 -0
  94. meta_pharmacy/labels/__init__.py +5 -0
  95. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
  96. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  97. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  98. meta_pharmacy/labels/label_data.py +14 -0
  99. meta_pharmacy/labels/print_sheets.py +97 -0
  100. meta_pharmacy/list_data.py +8 -0
  101. meta_pharmacy/management/__init__.py +0 -0
  102. meta_pharmacy/management/commands/__init__.py +0 -0
  103. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
  104. meta_pharmacy/migrations/0002_initial.py +695 -0
  105. meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
  106. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  107. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  108. meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
  109. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  110. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
  111. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  112. meta_pharmacy/models/__init__.py +3 -0
  113. meta_pharmacy/models/label_data.py +38 -0
  114. meta_pharmacy/models/rx.py +18 -0
  115. meta_pharmacy/models/rx_label.py +39 -0
  116. meta_pharmacy/models/substitutions.py +88 -0
  117. meta_pharmacy/urls.py +8 -0
  118. meta_pharmacy/utils/__init__.py +1 -0
  119. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  120. meta_prn/action_items.py +52 -2
  121. meta_prn/admin/__init__.py +3 -0
  122. meta_prn/admin/dm_referral_admin.py +49 -0
  123. meta_prn/admin/offschedule_dm_referral_admin.py +47 -0
  124. meta_prn/admin/onschedule_dm_referral_admin.py +39 -0
  125. meta_prn/admin/pregnancy_notification_admin.py +6 -2
  126. meta_prn/baker_recipes.py +8 -1
  127. meta_prn/choices.py +2 -1
  128. meta_prn/constants.py +4 -1
  129. meta_prn/forms/__init__.py +2 -0
  130. meta_prn/forms/dm_referral_form.py +40 -0
  131. meta_prn/forms/offschedule_dm_referral_form.py +35 -0
  132. meta_prn/forms/offschedule_form.py +6 -0
  133. meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
  134. meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
  135. meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +1156 -0
  136. meta_prn/migrations/0058_dmreferral_referral_note_and_more.py +29 -0
  137. meta_prn/migrations/0059_alter_historicaloffstudymedication_reason_and_more.py +53 -0
  138. meta_prn/models/__init__.py +13 -2
  139. meta_prn/models/dm_referral.py +39 -0
  140. meta_prn/models/offschedule.py +15 -1
  141. meta_prn/models/onschedule.py +6 -0
  142. meta_prn/models/signals.py +41 -1
  143. meta_prn/tests/tests/test_dm_referral.py +203 -0
  144. meta_reports/__init__.py +1 -0
  145. meta_reports/admin/__init__.py +15 -0
  146. meta_reports/admin/dbviews/__init__.py +14 -0
  147. meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
  148. meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
  149. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
  150. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
  151. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
  152. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
  153. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
  154. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
  155. meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
  156. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
  157. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
  158. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
  159. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
  160. meta_reports/admin/endpoints_admin.py +14 -0
  161. meta_reports/admin/endpoints_all_admin.py +13 -0
  162. meta_reports/admin/last_imp_refill_admin.py +181 -0
  163. meta_reports/admin/list_filters.py +30 -0
  164. meta_reports/admin/modeladmin_mixins.py +112 -0
  165. meta_reports/admin_site.py +5 -0
  166. meta_reports/apps.py +1 -16
  167. meta_reports/forms/__init__.py +1 -0
  168. meta_reports/forms/missing_ogtt_note_form.py +33 -0
  169. meta_reports/management/__init__.py +0 -0
  170. meta_reports/management/commands/__init__.py +0 -0
  171. meta_reports/management/commands/generate_endpoints.py +13 -0
  172. meta_reports/migrations/0001_initial.py +87 -0
  173. meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
  174. meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
  175. meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
  176. meta_reports/migrations/0005_endpoints.py +47 -0
  177. meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
  178. meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
  179. meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
  180. meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
  181. meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
  182. meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
  183. meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
  184. meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
  185. meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
  186. meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
  187. meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
  188. meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
  189. meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
  190. meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
  191. meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
  192. meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
  193. meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
  194. meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
  195. meta_reports/migrations/0024_glucosesummary.py +38 -0
  196. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  197. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  198. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  199. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  200. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  201. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  202. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  203. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  204. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  205. meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
  206. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
  207. meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
  208. meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
  209. meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
  210. meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
  211. meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
  212. meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
  213. meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
  214. meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
  215. meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
  216. meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
  217. meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
  218. meta_reports/migrations/0047_impsubstitutions.py +56 -0
  219. meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
  220. meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
  221. meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
  222. meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
  223. meta_reports/migrations/0052_lastimpvisit.py +57 -0
  224. meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
  225. meta_reports/models/__init__.py +16 -0
  226. meta_reports/models/dbviews/README +14 -0
  227. meta_reports/models/dbviews/__init__.py +9 -0
  228. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  229. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  230. meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
  231. meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
  232. meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
  233. meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
  234. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  235. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
  236. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
  237. meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
  238. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
  239. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
  240. meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
  241. meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
  242. meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
  243. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
  244. meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
  245. meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
  246. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
  247. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
  248. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
  249. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
  250. meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
  251. meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
  252. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
  253. meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
  254. meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
  255. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
  256. meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
  257. meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
  258. meta_reports/models/endpoints.py +31 -0
  259. meta_reports/models/endpoints_proxy.py +11 -0
  260. meta_reports/models/last_imp_refill.py +34 -0
  261. meta_reports/tasks.py +12 -0
  262. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  263. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  264. meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
  265. meta_reports/tests/test_sql_gen.py +5 -0
  266. meta_reports/urls.py +8 -0
  267. meta_reports/utils.py +0 -0
  268. meta_screening/admin/subject_screening_admin.py +1 -0
  269. meta_screening/form_validators/screening_part_two.py +1 -1
  270. meta_screening/migrations/0062_remove_icpreferral_site_and_more.py +27 -0
  271. meta_screening/migrations/0063_alter_historicalscreeningpartone_fasting_duration_str_and_more.py +184 -0
  272. meta_screening/migrations/0064_remove_historicalscreeningpartone_fasting_duration_minutes_and_more.py +126 -0
  273. meta_screening/migrations/0065_auto_20240516_0352.py +31 -0
  274. meta_screening/migrations/0066_alter_historicalscreeningpartone_fasting_duration_delta_and_more.py +103 -0
  275. meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
  276. meta_screening/models/__init__.py +1 -1
  277. meta_screening/tests/holidays.csv +1 -1
  278. meta_screening/tests/meta_test_case_mixin.py +17 -2
  279. meta_screening/tests/options.py +3 -3
  280. meta_sites/__init__.py +0 -1
  281. meta_sites/sites.py +8 -7
  282. meta_sites/tests/test_sites.py +1 -1
  283. meta_subject/action_items.py +25 -2
  284. meta_subject/admin/__init__.py +2 -1
  285. meta_subject/admin/birth_outcome_admin.py +4 -3
  286. meta_subject/admin/blood_results/__init__.py +1 -1
  287. meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
  288. meta_subject/admin/delivery_admin.py +0 -1
  289. meta_subject/admin/diabetes/__init__.py +2 -0
  290. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  291. meta_subject/admin/{dm_referral_followup_admin.py → diabetes/dm_followup_admin.py} +15 -8
  292. meta_subject/admin/glucose_admin.py +1 -1
  293. meta_subject/admin/glucose_fbg_admin.py +38 -8
  294. meta_subject/admin/other_arv_regimens_admin.py +2 -0
  295. meta_subject/admin/study_medication_admin.py +10 -0
  296. meta_subject/admin/subject_visit_admin.py +4 -1
  297. meta_subject/baker_recipes.py +6 -0
  298. meta_subject/choices.py +8 -0
  299. meta_subject/constants.py +2 -1
  300. meta_subject/form_validators/__init__.py +2 -1
  301. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  302. meta_subject/form_validators/{dm_referral_followup_form_validator.py → dm_followup_form_validator.py} +41 -2
  303. meta_subject/forms/__init__.py +2 -1
  304. meta_subject/forms/blood_results/__init__.py +1 -1
  305. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
  306. meta_subject/forms/diabetes/__init__.py +2 -0
  307. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  308. meta_subject/forms/diabetes/dm_followup_form.py +25 -0
  309. meta_subject/forms/glucose_fbg_form.py +38 -16
  310. meta_subject/forms/study_medication_form.py +35 -0
  311. meta_subject/forms/subject_visit_form.py +16 -0
  312. meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
  313. meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
  314. meta_subject/metadata_rules/metadata_rules.py +21 -0
  315. meta_subject/metadata_rules/predicates.py +67 -8
  316. meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
  317. meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
  318. meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
  319. meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
  320. meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
  321. meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
  322. meta_subject/migrations/0181_dmreferralfollowup_action_identifier_and_more.py +143 -0
  323. meta_subject/migrations/0182_rename_dmreferralfollowup_dmfollowup_and_more.py +54 -0
  324. meta_subject/migrations/0183_alter_dmfollowup_on_dm_medications_and_more.py +31 -0
  325. meta_subject/migrations/0184_alter_glucose_options_and_more.py +31 -0
  326. meta_subject/migrations/0185_alter_bloodresultsins_fasting_duration_str_and_more.py +82 -0
  327. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +55 -0
  328. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +451 -0
  329. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +403 -0
  330. meta_subject/migrations/0189_alter_dmdxresult_options_and_more.py +116 -0
  331. meta_subject/migrations/0190_dmdiagnosis_dx_no_tmg_reason_and_more.py +65 -0
  332. meta_subject/migrations/0191_alter_dmdiagnosis_dx_no_tmg_reason_and_more.py +70 -0
  333. meta_subject/migrations/0192_rename_glucose_quantifier_glucosefbg_fbg_quantifier_and_more.py +44 -0
  334. meta_subject/migrations/0193_alter_glucosefbg_fbg_value_and_more.py +44 -0
  335. meta_subject/migrations/0194_remove_glucosefbg_assay_datetime_and_more.py +166 -0
  336. meta_subject/migrations/0195_alter_glucosefbg_fbg_datetime_and_more.py +27 -0
  337. meta_subject/migrations/0196_glucosefbg_fbg_not_performed_reason_and_more.py +49 -0
  338. meta_subject/migrations/0197_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  339. meta_subject/migrations/0198_alter_glucosefbg_fasting_duration_estimated_and_more.py +33 -0
  340. meta_subject/migrations/0199_auto_20240516_0247.py +18 -0
  341. meta_subject/migrations/0200_rename_fasting_duration_minutes_bloodresultsins_fasting_duration_delta_and_more.py +43 -0
  342. meta_subject/migrations/0201_alter_bloodresultsins_fasting_duration_delta_and_more.py +58 -0
  343. meta_subject/migrations/0202_auto_20240516_0315.py +32 -0
  344. meta_subject/migrations/0203_alter_bloodresultsins_fasting_duration_delta_and_more.py +67 -0
  345. meta_subject/migrations/0204_glucosefbg_repeat_fbg_date_and_more.py +27 -0
  346. meta_subject/migrations/0205_historicalsubjectrequisition_crf_status_and_more.py +80 -0
  347. meta_subject/migrations/0206_bloodresultsfbc_crf_status_and_more.py +62 -0
  348. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  349. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  350. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  351. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  352. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  353. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  354. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  355. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  356. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  357. meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
  358. meta_subject/models/__init__.py +3 -2
  359. meta_subject/models/birth_outcomes.py +6 -1
  360. meta_subject/models/blood_results/__init__.py +1 -1
  361. meta_subject/models/blood_results/blood_results_fbc.py +3 -2
  362. meta_subject/models/blood_results/blood_results_hba1c.py +2 -0
  363. meta_subject/models/blood_results/blood_results_ins.py +2 -0
  364. meta_subject/models/blood_results/blood_results_lft.py +2 -0
  365. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +5 -3
  366. meta_subject/models/blood_results/blood_results_rft.py +2 -0
  367. meta_subject/models/diabetes/__init__.py +2 -0
  368. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  369. meta_subject/models/{dm_referral_followup.py → diabetes/dm_followup.py} +18 -6
  370. meta_subject/models/glucose.py +7 -14
  371. meta_subject/models/glucose_fbg.py +40 -51
  372. meta_subject/models/health_economics/health_economics_update.py +2 -0
  373. meta_subject/models/physical_exam.py +1 -0
  374. meta_subject/models/signals.py +19 -0
  375. meta_subject/models/subject_requisition.py +3 -4
  376. meta_subject/models/todo.txt +1 -1
  377. meta_subject/static/meta_subject/slider.css +1 -1
  378. meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
  379. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  380. meta_subject/tests/holidays.csv +1 -1
  381. meta_subject/tests/tests/test_egfr.py +6 -5
  382. meta_subject/tests/tests/test_medication_adherence.py +5 -1
  383. meta_subject/tests/tests/test_metadata_rules.py +34 -4
  384. meta_subject/tests/tests/test_mnsi.py +212 -121
  385. meta_subject/tests/tests/test_sf12.py +0 -12
  386. meta_visit_schedule/constants.py +7 -1
  387. meta_visit_schedule/tests/tests/test_schedule.py +4 -0
  388. meta_visit_schedule/visit_schedules/phase_three/crfs.py +87 -14
  389. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
  390. meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
  391. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +60 -0
  392. meta_visit_schedule/visit_schedules/phase_three/visit_schedule.py +2 -0
  393. tests/etc/randomization_list.csv +1 -1
  394. {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
  395. tests/holidays.csv +1 -1
  396. tests/test_settings.py +186 -0
  397. meta_edc/tests/etc/user-aes-local.key +0 -1
  398. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  399. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  400. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  401. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  402. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  403. meta_edc/tests/etc/user-salt-local.key +0 -0
  404. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  405. meta_edc-0.3.7.dist-info/METADATA +0 -87
  406. meta_reports/tests/holidays.csv +0 -15
  407. meta_subject/forms/dm_referral_followup.py +0 -18
  408. /meta_edc-0.3.7.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
  409. /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
  410. /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
  411. {meta_edc-0.3.7.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -0,0 +1,25 @@
1
+ # Generated by Django 5.0.8 on 2024-08-22 19:34
2
+
3
+ from django.db import migrations
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ("meta_reports", "0030_auto_20240822_1637"),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.CreateModel(
14
+ name="EndpointsProxy",
15
+ fields=[],
16
+ options={
17
+ "verbose_name": "Endpoints (DM): All",
18
+ "verbose_name_plural": "Endpoints (DM): All",
19
+ "proxy": True,
20
+ "indexes": [],
21
+ "constraints": [],
22
+ },
23
+ bases=("meta_reports.endpoints",),
24
+ ),
25
+ ]
@@ -0,0 +1,21 @@
1
+ # Generated by Django 5.0.8 on 2024-08-22 19:36
2
+
3
+ from django.db import migrations
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ("meta_reports", "0031_endpointsproxy"),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.AlterModelOptions(
14
+ name="endpointsproxy",
15
+ options={
16
+ "default_permissions": ("view", "export", "viewallsites"),
17
+ "verbose_name": "Endpoints (DM): All",
18
+ "verbose_name_plural": "Endpoints (DM): All",
19
+ },
20
+ ),
21
+ ]
@@ -0,0 +1,54 @@
1
+ # Generated by Django 5.0.8 on 2024-08-22 21:12
2
+
3
+ import django_db_views.migration_functions
4
+ import django_db_views.operations
5
+ from django.db import migrations
6
+
7
+
8
+ class Migration(migrations.Migration):
9
+
10
+ dependencies = [
11
+ ("meta_reports", "0032_alter_endpointsproxy_options"),
12
+ ]
13
+
14
+ operations = [
15
+ django_db_views.operations.ViewRunPython(
16
+ code=django_db_views.migration_functions.ForwardViewMigration(
17
+ '# noqa\nselect *, uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as \'ogtt_value\', null as \'ogtt_datetime\',\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n) as A\norder by subject_identifier, fbg_datetime',
18
+ "glucose_summary_view",
19
+ engine="django.db.backends.mysql",
20
+ ),
21
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
22
+ '# noqa\nselect *, uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as \'ogtt_value\', null as \'ogtt_datetime\',\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as \'fasted\',\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
23
+ "glucose_summary_view",
24
+ engine="django.db.backends.mysql",
25
+ ),
26
+ atomic=False,
27
+ ),
28
+ django_db_views.operations.ViewRunPython(
29
+ code=django_db_views.migration_functions.ForwardViewMigration(
30
+ '# noqa\nselect *, get_random_uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n) as A\norder by subject_identifier, fbg_datetime',
31
+ "glucose_summary_view",
32
+ engine="django.db.backends.postgresql",
33
+ ),
34
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
35
+ '# noqa\nselect *, get_random_uuid() as id, now() as created, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
36
+ "glucose_summary_view",
37
+ engine="django.db.backends.postgresql",
38
+ ),
39
+ atomic=False,
40
+ ),
41
+ django_db_views.operations.ViewRunPython(
42
+ code=django_db_views.migration_functions.ForwardViewMigration(
43
+ '# noqa\nSELECT *, lower(\n hex(randomblob(4)) || \'-\' || hex(randomblob(2)) || \'-\' || \'4\' ||\n substr(hex( randomblob(2)), 2) || \'-\' ||\n substr(\'AB89\', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || \'-\' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select v.subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier\n UNION\n select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier \n ) as A\norder by subject_identifier, fbg_datetime',
44
+ "glucose_summary_view",
45
+ engine="django.db.backends.sqlite3",
46
+ ),
47
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
48
+ '# noqa\nSELECT *, lower(\n hex(randomblob(4)) || \'-\' || hex(randomblob(2)) || \'-\' || \'4\' ||\n substr(hex( randomblob(2)), 2) || \'-\' ||\n substr(\'AB89\', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || \'-\' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`, \'meta_reports.glucose_summary_view\' as report_model\nfrom (\n select subject_identifier, fbg_value, fbg_datetime, null as ogtt_value, null as ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucosefbg as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id\n UNION\n select subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,\n case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as fasted,\n fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id\n from meta_subject_glucose as fbg\n left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id) as A\norder by subject_identifier, fbg_datetime',
49
+ "glucose_summary_view",
50
+ engine="django.db.backends.sqlite3",
51
+ ),
52
+ atomic=False,
53
+ ),
54
+ ]
@@ -0,0 +1,54 @@
1
+ # Generated by Django 5.0.8 on 2024-08-23 13:42
2
+
3
+ import django_db_views.migration_functions
4
+ import django_db_views.operations
5
+ from django.db import migrations
6
+
7
+
8
+ class Migration(migrations.Migration):
9
+
10
+ dependencies = [
11
+ ("meta_reports", "0033_auto_20240823_0012"),
12
+ ]
13
+
14
+ operations = [
15
+ django_db_views.operations.ViewRunPython(
16
+ code=django_db_views.migration_functions.ForwardViewMigration(
17
+ "# noqa\n select *, uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
18
+ "missing_screening_ogtt_view",
19
+ engine="django.db.backends.mysql",
20
+ ),
21
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
22
+ "# noqa\n select *, uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
23
+ "missing_screening_ogtt_view",
24
+ engine="django.db.backends.mysql",
25
+ ),
26
+ atomic=False,
27
+ ),
28
+ django_db_views.operations.ViewRunPython(
29
+ code=django_db_views.migration_functions.ForwardViewMigration(
30
+ "# noqa\n select *, get_random_uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
31
+ "missing_screening_ogtt_view",
32
+ engine="django.db.backends.postgresql",
33
+ ),
34
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
35
+ "# noqa\n select *, get_random_uuid() as id, now() as created,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, repeat_glucose_performed as repeated,\n p3_ltfu, fbg2_value, ogtt2_value, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
36
+ "missing_screening_ogtt_view",
37
+ engine="django.db.backends.postgresql",
38
+ ),
39
+ atomic=False,
40
+ ),
41
+ django_db_views.operations.ViewRunPython(
42
+ code=django_db_views.migration_functions.ForwardViewMigration(
43
+ "# noqa\nSELECT *, lower(\n hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||\n substr(hex( randomblob(2)), 2) || '-' ||\n substr('AB89', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || '-' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, fbg2_value, ogtt2_value,\n repeat_glucose_performed as repeated, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented,\n screening_identifier as subject_identifier, id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
44
+ "missing_screening_ogtt_view",
45
+ engine="django.db.backends.sqlite3",
46
+ ),
47
+ reverse_code=django_db_views.migration_functions.BackwardViewMigration(
48
+ "# noqa\nSELECT *, lower(\n hex(randomblob(4)) || '-' || hex(randomblob(2)) || '-' || '4' ||\n substr(hex( randomblob(2)), 2) || '-' ||\n substr('AB89', 1 + (abs(random()) % 4) , 1) ||\n substr(hex(randomblob(2)), 2) || '-' ||\n hex(randomblob(6))\n ) as id, datetime() as `created`,\n 'meta_reports.missing_screening_ogtt_view' as report_model\n from (\n select screening_identifier, site_id, report_datetime as 'screening_datetime', fbg_datetime,\n converted_fbg_value as fbg_value, converted_ogtt_value as ogtt_value, fbg2_value, ogtt2_value,\n repeat_glucose_performed as repeated, p3_ltfu, fbg2_datetime, ogtt2_datetime, consented, \"\" as subject_identifier,\n id as original_id\n from meta_screening_subjectscreening\n where converted_fbg_value is not null and converted_ogtt_value is null and unsuitable_agreed != \"Yes\"\n ) as A\n order by screening_identifier",
49
+ "missing_screening_ogtt_view",
50
+ engine="django.db.backends.sqlite3",
51
+ ),
52
+ atomic=False,
53
+ ),
54
+ ]
@@ -0,0 +1,457 @@
1
+ # Generated by Django 5.0.8 on 2024-08-23 13:59
2
+
3
+ import _socket
4
+ import django.db.models.deletion
5
+ import django.db.models.manager
6
+ import django_audit_fields.fields.hostname_modification_field
7
+ import django_audit_fields.fields.userfield
8
+ import django_audit_fields.fields.uuid_auto_field
9
+ import django_audit_fields.models.audit_model_mixin
10
+ import django_revision.revision_field
11
+ import edc_model.validators.date
12
+ import edc_sites.managers
13
+ import edc_utils.date
14
+ import simple_history.models
15
+ import uuid
16
+ from django.conf import settings
17
+ from django.db import migrations, models
18
+
19
+
20
+ class Migration(migrations.Migration):
21
+
22
+ dependencies = [
23
+ ("meta_reports", "0034_auto_20240823_1642"),
24
+ ("sites", "0002_alter_domain_unique"),
25
+ migrations.swappable_dependency(settings.AUTH_USER_MODEL),
26
+ ]
27
+
28
+ operations = [
29
+ migrations.CreateModel(
30
+ name="HistoricalMissingOgttNote",
31
+ fields=[
32
+ (
33
+ "revision",
34
+ django_revision.revision_field.RevisionField(
35
+ blank=True,
36
+ editable=False,
37
+ help_text="System field. Git repository tag:branch:commit.",
38
+ max_length=75,
39
+ null=True,
40
+ verbose_name="Revision",
41
+ ),
42
+ ),
43
+ (
44
+ "created",
45
+ models.DateTimeField(
46
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
47
+ ),
48
+ ),
49
+ (
50
+ "modified",
51
+ models.DateTimeField(
52
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
53
+ ),
54
+ ),
55
+ (
56
+ "user_created",
57
+ django_audit_fields.fields.userfield.UserField(
58
+ blank=True,
59
+ help_text="Updated by admin.save_model",
60
+ max_length=50,
61
+ verbose_name="user created",
62
+ ),
63
+ ),
64
+ (
65
+ "user_modified",
66
+ django_audit_fields.fields.userfield.UserField(
67
+ blank=True,
68
+ help_text="Updated by admin.save_model",
69
+ max_length=50,
70
+ verbose_name="user modified",
71
+ ),
72
+ ),
73
+ (
74
+ "hostname_created",
75
+ models.CharField(
76
+ blank=True,
77
+ default=_socket.gethostname,
78
+ help_text="System field. (modified on create only)",
79
+ max_length=60,
80
+ verbose_name="Hostname created",
81
+ ),
82
+ ),
83
+ (
84
+ "hostname_modified",
85
+ django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
86
+ blank=True,
87
+ help_text="System field. (modified on every save)",
88
+ max_length=50,
89
+ verbose_name="Hostname modified",
90
+ ),
91
+ ),
92
+ (
93
+ "device_created",
94
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
95
+ ),
96
+ (
97
+ "device_modified",
98
+ models.CharField(
99
+ blank=True, max_length=10, verbose_name="Device modified"
100
+ ),
101
+ ),
102
+ (
103
+ "locale_created",
104
+ models.CharField(
105
+ blank=True,
106
+ help_text="Auto-updated by Modeladmin",
107
+ max_length=10,
108
+ null=True,
109
+ verbose_name="Locale created",
110
+ ),
111
+ ),
112
+ (
113
+ "locale_modified",
114
+ models.CharField(
115
+ blank=True,
116
+ help_text="Auto-updated by Modeladmin",
117
+ max_length=10,
118
+ null=True,
119
+ verbose_name="Locale modified",
120
+ ),
121
+ ),
122
+ (
123
+ "id",
124
+ django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
125
+ blank=True,
126
+ db_index=True,
127
+ editable=False,
128
+ help_text="System auto field. UUID primary key.",
129
+ ),
130
+ ),
131
+ ("subject_identifier", models.CharField(db_index=True, max_length=50)),
132
+ ("report_model", models.CharField(max_length=150)),
133
+ ("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
134
+ ("note", models.TextField(blank=True, null=True)),
135
+ (
136
+ "ogtt_base_datetime",
137
+ models.DateTimeField(
138
+ blank=True,
139
+ help_text="(glucose solution given)",
140
+ null=True,
141
+ validators=[edc_model.validators.date.datetime_not_future],
142
+ verbose_name="Date/time oral glucose solution given",
143
+ ),
144
+ ),
145
+ (
146
+ "ogtt_value",
147
+ models.DecimalField(
148
+ blank=True,
149
+ decimal_places=2,
150
+ help_text="A `HIGH` reading may be entered as 9999.99",
151
+ max_digits=8,
152
+ null=True,
153
+ verbose_name="Blood glucose measure 2hrs <u>after</u> oral glucose solution given",
154
+ ),
155
+ ),
156
+ (
157
+ "ogtt_quantifier",
158
+ models.CharField(
159
+ choices=[
160
+ ("=", "="),
161
+ (">", ">"),
162
+ (">=", ">="),
163
+ ("<", "<"),
164
+ ("<=", "<="),
165
+ ],
166
+ default="=",
167
+ max_length=10,
168
+ ),
169
+ ),
170
+ (
171
+ "ogtt_units",
172
+ models.CharField(
173
+ choices=[
174
+ ("mg/dL", "mg/dL"),
175
+ ("mmol/L", "mmol/L (millimoles/L)"),
176
+ ("N/A", "Not applicable"),
177
+ ],
178
+ default="N/A",
179
+ max_length=15,
180
+ verbose_name="Units (Blood glucose 2hrs after...)",
181
+ ),
182
+ ),
183
+ (
184
+ "ogtt_datetime",
185
+ models.DateTimeField(
186
+ blank=True,
187
+ help_text="(2 hours after glucose solution given)",
188
+ null=True,
189
+ validators=[edc_model.validators.date.datetime_not_future],
190
+ verbose_name="Date/time blood glucose measured 2hrs <u>after</u> oral glucose solution given",
191
+ ),
192
+ ),
193
+ (
194
+ "status",
195
+ models.CharField(
196
+ choices=[
197
+ ("done", "Done"),
198
+ ("PENDING", "Data is pending"),
199
+ ("not_available", "Data not available"),
200
+ ],
201
+ default="done",
202
+ max_length=25,
203
+ ),
204
+ ),
205
+ (
206
+ "history_id",
207
+ models.UUIDField(
208
+ default=uuid.uuid4, editable=False, primary_key=True, serialize=False
209
+ ),
210
+ ),
211
+ ("history_date", models.DateTimeField(db_index=True)),
212
+ ("history_change_reason", models.CharField(max_length=100, null=True)),
213
+ (
214
+ "history_type",
215
+ models.CharField(
216
+ choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
217
+ max_length=1,
218
+ ),
219
+ ),
220
+ (
221
+ "history_user",
222
+ models.ForeignKey(
223
+ null=True,
224
+ on_delete=django.db.models.deletion.SET_NULL,
225
+ related_name="+",
226
+ to=settings.AUTH_USER_MODEL,
227
+ ),
228
+ ),
229
+ (
230
+ "site",
231
+ models.ForeignKey(
232
+ blank=True,
233
+ db_constraint=False,
234
+ null=True,
235
+ on_delete=django.db.models.deletion.DO_NOTHING,
236
+ related_name="+",
237
+ to="sites.site",
238
+ ),
239
+ ),
240
+ ],
241
+ options={
242
+ "verbose_name": "historical Screening: Missing OGTT Note",
243
+ "verbose_name_plural": "historical Screening: Missing OGTT Notes",
244
+ "ordering": ("-history_date", "-history_id"),
245
+ "get_latest_by": ("history_date", "history_id"),
246
+ },
247
+ bases=(simple_history.models.HistoricalChanges, models.Model),
248
+ ),
249
+ migrations.CreateModel(
250
+ name="MissingOgttNote",
251
+ fields=[
252
+ (
253
+ "revision",
254
+ django_revision.revision_field.RevisionField(
255
+ blank=True,
256
+ editable=False,
257
+ help_text="System field. Git repository tag:branch:commit.",
258
+ max_length=75,
259
+ null=True,
260
+ verbose_name="Revision",
261
+ ),
262
+ ),
263
+ (
264
+ "created",
265
+ models.DateTimeField(
266
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
267
+ ),
268
+ ),
269
+ (
270
+ "modified",
271
+ models.DateTimeField(
272
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
273
+ ),
274
+ ),
275
+ (
276
+ "user_created",
277
+ django_audit_fields.fields.userfield.UserField(
278
+ blank=True,
279
+ help_text="Updated by admin.save_model",
280
+ max_length=50,
281
+ verbose_name="user created",
282
+ ),
283
+ ),
284
+ (
285
+ "user_modified",
286
+ django_audit_fields.fields.userfield.UserField(
287
+ blank=True,
288
+ help_text="Updated by admin.save_model",
289
+ max_length=50,
290
+ verbose_name="user modified",
291
+ ),
292
+ ),
293
+ (
294
+ "hostname_created",
295
+ models.CharField(
296
+ blank=True,
297
+ default=_socket.gethostname,
298
+ help_text="System field. (modified on create only)",
299
+ max_length=60,
300
+ verbose_name="Hostname created",
301
+ ),
302
+ ),
303
+ (
304
+ "hostname_modified",
305
+ django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
306
+ blank=True,
307
+ help_text="System field. (modified on every save)",
308
+ max_length=50,
309
+ verbose_name="Hostname modified",
310
+ ),
311
+ ),
312
+ (
313
+ "device_created",
314
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
315
+ ),
316
+ (
317
+ "device_modified",
318
+ models.CharField(
319
+ blank=True, max_length=10, verbose_name="Device modified"
320
+ ),
321
+ ),
322
+ (
323
+ "locale_created",
324
+ models.CharField(
325
+ blank=True,
326
+ help_text="Auto-updated by Modeladmin",
327
+ max_length=10,
328
+ null=True,
329
+ verbose_name="Locale created",
330
+ ),
331
+ ),
332
+ (
333
+ "locale_modified",
334
+ models.CharField(
335
+ blank=True,
336
+ help_text="Auto-updated by Modeladmin",
337
+ max_length=10,
338
+ null=True,
339
+ verbose_name="Locale modified",
340
+ ),
341
+ ),
342
+ (
343
+ "id",
344
+ django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
345
+ blank=True,
346
+ editable=False,
347
+ help_text="System auto field. UUID primary key.",
348
+ primary_key=True,
349
+ serialize=False,
350
+ ),
351
+ ),
352
+ ("subject_identifier", models.CharField(max_length=50, unique=True)),
353
+ ("report_model", models.CharField(max_length=150)),
354
+ ("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
355
+ ("note", models.TextField(blank=True, null=True)),
356
+ (
357
+ "ogtt_base_datetime",
358
+ models.DateTimeField(
359
+ blank=True,
360
+ help_text="(glucose solution given)",
361
+ null=True,
362
+ validators=[edc_model.validators.date.datetime_not_future],
363
+ verbose_name="Date/time oral glucose solution given",
364
+ ),
365
+ ),
366
+ (
367
+ "ogtt_value",
368
+ models.DecimalField(
369
+ blank=True,
370
+ decimal_places=2,
371
+ help_text="A `HIGH` reading may be entered as 9999.99",
372
+ max_digits=8,
373
+ null=True,
374
+ verbose_name="Blood glucose measure 2hrs <u>after</u> oral glucose solution given",
375
+ ),
376
+ ),
377
+ (
378
+ "ogtt_quantifier",
379
+ models.CharField(
380
+ choices=[
381
+ ("=", "="),
382
+ (">", ">"),
383
+ (">=", ">="),
384
+ ("<", "<"),
385
+ ("<=", "<="),
386
+ ],
387
+ default="=",
388
+ max_length=10,
389
+ ),
390
+ ),
391
+ (
392
+ "ogtt_units",
393
+ models.CharField(
394
+ choices=[
395
+ ("mg/dL", "mg/dL"),
396
+ ("mmol/L", "mmol/L (millimoles/L)"),
397
+ ("N/A", "Not applicable"),
398
+ ],
399
+ default="N/A",
400
+ max_length=15,
401
+ verbose_name="Units (Blood glucose 2hrs after...)",
402
+ ),
403
+ ),
404
+ (
405
+ "ogtt_datetime",
406
+ models.DateTimeField(
407
+ blank=True,
408
+ help_text="(2 hours after glucose solution given)",
409
+ null=True,
410
+ validators=[edc_model.validators.date.datetime_not_future],
411
+ verbose_name="Date/time blood glucose measured 2hrs <u>after</u> oral glucose solution given",
412
+ ),
413
+ ),
414
+ (
415
+ "status",
416
+ models.CharField(
417
+ choices=[
418
+ ("done", "Done"),
419
+ ("PENDING", "Data is pending"),
420
+ ("not_available", "Data not available"),
421
+ ],
422
+ default="done",
423
+ max_length=25,
424
+ ),
425
+ ),
426
+ (
427
+ "site",
428
+ models.ForeignKey(
429
+ null=True,
430
+ on_delete=django.db.models.deletion.PROTECT,
431
+ related_name="+",
432
+ to="sites.site",
433
+ ),
434
+ ),
435
+ ],
436
+ options={
437
+ "verbose_name": "Screening: Missing OGTT Note",
438
+ "verbose_name_plural": "Screening: Missing OGTT Notes",
439
+ "abstract": False,
440
+ "default_permissions": ("add", "change", "delete", "view", "export", "import"),
441
+ "default_manager_name": "objects",
442
+ "indexes": [
443
+ models.Index(
444
+ fields=["modified", "created"], name="meta_report_modifie_4a4894_idx"
445
+ ),
446
+ models.Index(
447
+ fields=["user_modified", "user_created"],
448
+ name="meta_report_user_mo_5b8129_idx",
449
+ ),
450
+ ],
451
+ },
452
+ managers=[
453
+ ("on_site", edc_sites.managers.CurrentSiteManager()),
454
+ ("objects", django.db.models.manager.Manager()),
455
+ ],
456
+ ),
457
+ ]