meta-edc 0.3.39__py3-none-any.whl → 1.4.0__py3-none-any.whl

meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py

@@ -0,0 +1,535 @@
+# Generated by Django 5.1.2 on 2025-01-11 00:43
+
+import _socket
+import django.db.models.deletion
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django.utils.timezone
+import django_crypto_fields.fields.encrypted_text_field
+import django_revision.revision_field
+import edc_action_item.managers
+import edc_sites.managers
+import edc_utils.date
+import simple_history.models
+import uuid
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
+        ("meta_consent", "0025_alter_historicalsubjectconsent_first_name_and_more"),
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="HistoricalSubjectConsentV1Ext",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        db_index=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                    ),
+                ),
+                ("subject_identifier", models.CharField(db_index=True, max_length=50)),
+                (
+                    "subject_identifier_as_pk",
+                    models.UUIDField(default=uuid.uuid4, editable=False),
+                ),
+                (
+                    "subject_identifier_aka",
+                    models.CharField(
+                        editable=False,
+                        help_text="track a previously allocated identifier.",
+                        max_length=50,
+                        null=True,
+                        verbose_name="Subject Identifier a.k.a",
+                    ),
+                ),
+                (
+                    "action_identifier",
+                    models.CharField(blank=True, db_index=True, max_length=50, null=True),
+                ),
+                (
+                    "parent_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to parent reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                (
+                    "related_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to related reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                ("action_item_reason", models.TextField(editable=False, null=True)),
+                ("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
+                (
+                    "agrees_to_extension",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        help_text="See above for the definition of extended followup.",
+                        max_length=15,
+                        verbose_name="Does the participant agree to extend followup as per the protocol amendment?",
+                    ),
+                ),
+                (
+                    "comment",
+                    django_crypto_fields.fields.encrypted_text_field.EncryptedTextField(
+                        blank=True,
+                        help_text=" (Encryption: AES local)",
+                        max_length=250,
+                        null=True,
+                        verbose_name="Comment",
+                    ),
+                ),
+                (
+                    "consent_extension_version",
+                    models.CharField(
+                        editable=False,
+                        max_length=10,
+                        null=True,
+                        verbose_name="Consent extension version",
+                    ),
+                ),
+                (
+                    "consent_extension_definition_name",
+                    models.CharField(
+                        editable=False,
+                        max_length=50,
+                        null=True,
+                        verbose_name="Consent extension definition",
+                    ),
+                ),
+                (
+                    "history_id",
+                    models.UUIDField(
+                        default=uuid.uuid4, editable=False, primary_key=True, serialize=False
+                    ),
+                ),
+                ("history_date", models.DateTimeField(db_index=True)),
+                ("history_change_reason", models.CharField(max_length=100, null=True)),
+                (
+                    "history_type",
+                    models.CharField(
+                        choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
+                        max_length=1,
+                    ),
+                ),
+                (
+                    "action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "history_user",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.SET_NULL,
+                        related_name="+",
+                        to=settings.AUTH_USER_MODEL,
+                    ),
+                ),
+                (
+                    "parent_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "related_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "site",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_consent",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="meta_consent.subjectconsentv1",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "historical Consent V1 Extension",
+                "verbose_name_plural": "historical Consent V1 Extension",
+                "ordering": ("-history_date", "-history_id"),
+                "get_latest_by": ("history_date", "history_id"),
+            },
+            bases=(simple_history.models.HistoricalChanges, models.Model),
+        ),
+        migrations.CreateModel(
+            name="SubjectConsentV1Ext",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                        primary_key=True,
+                        serialize=False,
+                    ),
+                ),
+                ("subject_identifier", models.CharField(max_length=50, unique=True)),
+                (
+                    "subject_identifier_as_pk",
+                    models.UUIDField(default=uuid.uuid4, editable=False),
+                ),
+                (
+                    "subject_identifier_aka",
+                    models.CharField(
+                        editable=False,
+                        help_text="track a previously allocated identifier.",
+                        max_length=50,
+                        null=True,
+                        verbose_name="Subject Identifier a.k.a",
+                    ),
+                ),
+                (
+                    "action_identifier",
+                    models.CharField(blank=True, max_length=50, null=True, unique=True),
+                ),
+                (
+                    "parent_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to parent reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                (
+                    "related_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to related reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                ("action_item_reason", models.TextField(editable=False, null=True)),
+                ("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
+                (
+                    "agrees_to_extension",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        help_text="See above for the definition of extended followup.",
+                        max_length=15,
+                        verbose_name="Does the participant agree to extend followup as per the protocol amendment?",
+                    ),
+                ),
+                (
+                    "comment",
+                    django_crypto_fields.fields.encrypted_text_field.EncryptedTextField(
+                        blank=True,
+                        help_text=" (Encryption: AES local)",
+                        max_length=250,
+                        null=True,
+                        verbose_name="Comment",
+                    ),
+                ),
+                (
+                    "consent_extension_version",
+                    models.CharField(
+                        editable=False,
+                        max_length=10,
+                        null=True,
+                        verbose_name="Consent extension version",
+                    ),
+                ),
+                (
+                    "consent_extension_definition_name",
+                    models.CharField(
+                        editable=False,
+                        max_length=50,
+                        null=True,
+                        verbose_name="Consent extension definition",
+                    ),
+                ),
+                (
+                    "action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "parent_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "related_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "site",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_consent",
+                    models.ForeignKey(
+                        on_delete=django.db.models.deletion.PROTECT,
+                        to="meta_consent.subjectconsentv1",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "Consent V1 Extension",
+                "verbose_name_plural": "Consent V1 Extension",
+                "abstract": False,
+                "default_permissions": ("add", "change", "delete", "view", "export", "import"),
+                "default_manager_name": "objects",
+                "indexes": [
+                    models.Index(
+                        fields=[
+                            "action_identifier",
+                            "action_item",
+                            "related_action_item",
+                            "parent_action_item",
+                        ],
+                        name="meta_consen_action__e05e9c_idx",
+                    )
+                ],
+            },
+            managers=[
+                ("on_site", edc_sites.managers.CurrentSiteManager()),
+                ("objects", edc_action_item.managers.ActionIdentifierModelManager()),
+            ],
+        ),
+    ]

meta_consent/migrations/0027_auto_20250111_0344.py

@@ -0,0 +1,30 @@
+# Generated by Django 5.1.2 on 2025-01-11 00:44
+
+from django.db import IntegrityError, migrations, transaction
+from edc_registration.models import RegisteredSubject
+from tqdm import tqdm
+
+from meta_consent.action_items import ConsentV1ExtensionAction
+
+
+def update_action_item(apps, schema_editor):
+    total = RegisteredSubject.objects.all().count()
+    for obj in tqdm(RegisteredSubject.objects.all(), total=total):
+        try:
+            with transaction.atomic():
+                ConsentV1ExtensionAction(
+                    subject_identifier=obj.subject_identifier,
+                    skip_get_current_site=True,
+                    site_id=obj.site_id,
+                )
+        except IntegrityError:
+            pass
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_consent", "0026_historicalsubjectconsentv1ext_subjectconsentv1ext"),
+    ]
+
+    operations = [migrations.RunPython(update_action_item)]