meta-edc 0.3.39__py3-none-any.whl → 1.4.0__py3-none-any.whl

meta_prn/form_validators/end_of_study.py

@@ -1,29 +1,32 @@
 from urllib import parse
 
+from clinicedc_constants import DEAD, DELIVERY, LTFU, PREGNANCY, TOXICITY
 from django import forms
 from django.apps import apps as django_apps
 from django.core.exceptions import ObjectDoesNotExist
 from django.urls import reverse
 from django.utils.html import format_html
+from django.utils.translation import gettext as _
 from edc_action_item.models import ActionType
 from edc_adverse_event.form_validator_mixins import (
     RequiresDeathReportFormValidatorMixin,
 )
 from edc_consent.constants import CONSENT_WITHDRAWAL
-from edc_constants.constants import DEAD, DELIVERY, PREGNANCY, TOXICITY
 from edc_form_validators import INVALID_ERROR, FormValidator
-from edc_ltfu.constants import LTFU
 from edc_ltfu.modelform_mixins import RequiresLtfuFormValidatorMixin
 from edc_offstudy.constants import COMPLETED_FOLLOWUP
 from edc_offstudy.utils import OffstudyError
 from edc_prn.modelform_mixins import PrnFormValidatorMixin
 from edc_transfer.constants import TRANSFERRED
 from edc_utils import formatted_date
-from edc_visit_schedule.constants import MONTH36
+from edc_visit_schedule.constants import MONTH36, MONTH48
+from edc_visit_schedule.exceptions import OffScheduleError
+from edc_visit_schedule.site_visit_schedules import site_visit_schedules
 from edc_visit_schedule.utils import off_all_schedules_or_raise
 
 from ..constants import (
     CLINICAL_WITHDRAWAL,
+    COMPLETED_FOLLOWUP_48,
     INVESTIGATOR_DECISION,
     OFFSTUDY_MEDICATION_ACTION,
 )
@@ -44,6 +47,7 @@ class EndOfStudyFormValidator(
         self.validate_offstudy_datetime_against_last_seen_date()
 
         self.validate_completed_36m()
+        self.validate_completed_48m()
 
         self.required_if(DEAD, field="offstudy_reason", field_required="death_date")
         self.validate_death_report_if_deceased()
@@ -108,6 +112,41 @@ class EndOfStudyFormValidator(
                     {"offstudy_reason": "Invalid. 36 month visit has not been submitted."},
                     INVALID_ERROR,
                 )
+            schedule = site_visit_schedules.get_visit_schedule(
+                visit_schedule_name="visit_schedule"
+            ).schedules.get("schedule")
+            if subject_visit_model_cls.objects.filter(
+                subject_identifier=self.subject_identifier,
+                visit_code_sequence=0,
+                appointment__timepoint__gt=schedule.visits.get(MONTH36).timepoint,
+                appointment__schedule_name=schedule.name,
+            ):
+                self.raise_validation_error(
+                    {
+                        "offstudy_reason": (
+                            "Invalid. Participant has attended visits past 36 months."
+                        )
+                    },
+                    INVALID_ERROR,
+                )
+
+    def validate_completed_48m(self):
+        if (
+            self.cleaned_data.get("offstudy_reason")
+            and self.cleaned_data.get("offstudy_reason").name == COMPLETED_FOLLOWUP_48
+        ):
+            subject_visit_model_cls = django_apps.get_model("meta_subject.subjectvisit")
+            try:
+                subject_visit_model_cls.objects.get(
+                    subject_identifier=self.subject_identifier,
+                    visit_code=MONTH48,
+                    visit_code_sequence=0,
+                )
+            except ObjectDoesNotExist:
+                self.raise_validation_error(
+                    {"offstudy_reason": "Invalid. 48 month visit has not been submitted."},
+                    INVALID_ERROR,
+                )
 
     def validate_pregnancy(self):
         if (
@@ -152,7 +191,7 @@ class EndOfStudyFormValidator(
                 if (obj.bhcg_date or obj.report_datetime.date()) != self.cleaned_data.get(
                     "pregnancy_date"
                 ):
-                    dt = formatted_date((obj.bhcg_date or obj.report_datetime.date()))
+                    dt = formatted_date(obj.bhcg_date or obj.report_datetime.date())
                     self.raise_validation_error(
                         {
                             "pregnancy_date": (
@@ -189,7 +228,7 @@ class EndOfStudyFormValidator(
                     obj.delivery_datetime.date() or obj.report_datetime.date()
                 ) != self.cleaned_data.get("delivery_date"):
                     dt = formatted_date(
-                        (obj.delivery_datetime.date() or obj.report_datetime.date())
+                        obj.delivery_datetime.date() or obj.report_datetime.date()
                     )
                     self.raise_validation_error(
                         {
@@ -224,10 +263,15 @@ class EndOfStudyFormValidator(
 
             self.raise_validation_error(
                 format_html(
-                    "Participant is reported to be on study medication. Complete "
-                    f'<a href="{url}?{query_string}" title="Add new form">'
-                    f"{off_study_medication_model_cls._meta.verbose_name}</A> "
-                    "PRN action and try again."
+                    _(
+                        "Participant is reported to be on study medication. Complete "
+                        '<a href="{url}?{query_string}" title="Add new form">'
+                        "{verbose_name}</A> "
+                        "PRN action and try again."
+                    ),
+                    url=url,
+                    query_string=query_string,
+                    verbose_name=off_study_medication_model_cls._meta.verbose_name,
                 ),
                 INVALID_ERROR,
             )
@@ -237,20 +281,21 @@ class EndOfStudyFormValidator(
             off_all_schedules_or_raise(
                 subject_identifier=self.cleaned_data.get("subject_identifier"),
             )
-        except OffstudyError as e:
+        except (OffstudyError, OffScheduleError) as e:
             self.raise_validation_error(str(e), INVALID_ERROR)
 
     def validate_offstudy_datetime_against_last_seen_date(self):
-        if self.cleaned_data.get("offstudy_datetime") and self.cleaned_data.get(
-            "last_seen_date"
-        ):
-            if (
+        if (
+            self.cleaned_data.get("offstudy_datetime")
+            and self.cleaned_data.get("last_seen_date")
+            and (
                 self.cleaned_data.get("last_seen_date")
                 > self.cleaned_data.get("offstudy_datetime").date()
-            ):
-                raise forms.ValidationError(
-                    {"last_seen_date": "Invalid. May not be after termination date"}
-                )
+            )
+        ):
+            raise forms.ValidationError(
+                {"last_seen_date": "Invalid. May not be after termination date"}
+            )
 
     def validate_transfer(self):
         if (
@@ -260,7 +305,7 @@ class EndOfStudyFormValidator(
             transfer_model_cls = django_apps.get_model("meta_prn.subjecttransfer")
             try:
                 obj = transfer_model_cls.objects.get(
-                    subject_visit__subject_identifier=self.subject_identifier,
+                    subject_identifier=self.subject_identifier,
                 )
             except ObjectDoesNotExist:
                 self.raise_validation_error(
@@ -273,7 +318,7 @@ class EndOfStudyFormValidator(
                     INVALID_ERROR,
                 )
             else:
-                if obj.transfer_date.date() != self.cleaned_data.get("transfer_date"):
+                if obj.transfer_date != self.cleaned_data.get("transfer_date"):
                     dt = formatted_date(obj.transfer_date)
                     self.raise_validation_error(
                         {

meta_prn/form_validators/protocol_incident.py

@@ -1,4 +1,4 @@
-from edc_constants.constants import CLOSED, OTHER, YES
+from clinicedc_constants import CLOSED, OTHER, YES
 from edc_form_validators import FormValidator
 from edc_prn.modelform_mixins import PrnFormValidatorMixin
 

meta_prn/forms/__init__.py

@@ -8,3 +8,16 @@ from .offschedule_pregnancy_form import OffSchedulePregnancyForm
 from .pregnancy_notification_form import PregnancyNotificationForm
 from .protocol_incident_form import ProtocolIncidentForm
 from .subject_transfer_form import SubjectTransferForm
+
+__all__ = [
+    "DmReferralForm",
+    "EndOfStudyForm",
+    "LossToFollowupForm",
+    "OffScheduleDmReferralForm",
+    "OffScheduleForm",
+    "OffSchedulePregnancyForm",
+    "OffStudyMedicationForm",
+    "PregnancyNotificationForm",
+    "ProtocolIncidentForm",
+    "SubjectTransferForm",
+]

meta_prn/forms/dm_referral_form.py

@@ -24,17 +24,11 @@ class DmReferralForm(
 ):
     form_validator_cls = DmReferralFormValidator
 
-    # subject_identifier = forms.CharField(
-    #     label="Subject Identifier",
-    #     required=False,
-    #     widget=forms.TextInput(attrs={"readonly": "readonly"}),
-    # )
-
     class Meta:
         model = DmReferral
         fields = "__all__"
-        help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"}
-        widgets = {
+        help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"}  # noqa: RUF012
+        widgets = {  # noqa: RUF012
             "subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
             "action_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
         }

meta_prn/forms/end_of_study_form.py

@@ -28,4 +28,4 @@ class EndOfStudyForm(
     class Meta:
         model = EndOfStudy
         fields = "__all__"
-        labels = {"offstudy_datetime": "Date patient terminated from study:"}
+        labels = {"offstudy_datetime": "Date patient terminated from study:"}  # noqa: RUF012

meta_prn/forms/loss_to_followup_form.py

@@ -1,6 +1,6 @@
+from clinicedc_constants import YES
 from django import forms
 from edc_action_item.forms.action_item_form_mixin import ActionItemFormMixin
-from edc_constants.constants import YES
 from edc_form_validators.form_validator import FormValidator
 from edc_form_validators.form_validator_mixins import FormValidatorMixin
 from edc_model_form.mixins import BaseModelFormMixin

meta_prn/forms/off_study_medication_form.py

@@ -52,8 +52,8 @@ class OffStudyMedicationForm(
     class Meta:
         model = OffStudyMedication
         fields = "__all__"
-        help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"}
-        widgets = {
+        help_text = {"subject_identifier": "(read-only)", "action_identifier": "(read-only)"}  # noqa: RUF012
+        widgets = {  # noqa: RUF012
             "subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
             "action_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
         }

meta_prn/forms/offschedule_form.py

@@ -1,5 +1,8 @@
 from django import forms
+from django.core.exceptions import ObjectDoesNotExist
 from edc_action_item.forms.action_item_form_mixin import ActionItemFormMixin
+from edc_appointment.constants import MISSED_APPT
+from edc_appointment.models import Appointment
 from edc_form_validators.form_validator import FormValidator
 from edc_form_validators.form_validator_mixins import FormValidatorMixin
 from edc_model_form.mixins import BaseModelFormMixin
@@ -7,6 +10,8 @@ from edc_prn.modelform_mixins import PrnFormValidatorMixin
 from edc_sites.forms import SiteModelFormMixin
 from edc_visit_schedule.modelform_mixins import OffScheduleModelFormMixin
 
+from meta_subject.models import HivExitReview
+
 from ..models import OffSchedule
 
 
@@ -31,6 +36,26 @@ class OffScheduleForm(
         widget=forms.TextInput(attrs={"readonly": "readonly"}),
     )
 
+    def clean(self):
+        try:
+            HivExitReview.objects.get(
+                subject_visit__subject_identifier=self.get_subject_identifier()
+            )
+        except ObjectDoesNotExist as e:
+            # if last visit was missed do not require
+            last_appointment = (
+                Appointment.objects.filter(
+                    subject_identifier=self.get_subject_identifier(),
+                    subjectvisit__isnull=False,
+                )
+                .order_by("appt_datetime")
+                .last()
+            )
+            if last_appointment.appt_timing != MISSED_APPT:
+                raise forms.ValidationError(
+                    "Hiv Exit Review CRF is required before taking subject off schedule."
+                ) from e
+
     class Meta:
         model = OffSchedule
         fields = "__all__"

meta_prn/forms/pregnancy_notification_form.py

@@ -1,8 +1,8 @@
+from clinicedc_constants import FEMALE, NO, YES
 from dateutil.relativedelta import relativedelta
 from django import forms
 from django.core.exceptions import ObjectDoesNotExist
 from edc_action_item.forms.action_item_form_mixin import ActionItemFormMixin
-from edc_constants.constants import FEMALE, NO, YES
 from edc_form_validators import INVALID_ERROR
 from edc_form_validators.form_validator import FormValidator
 from edc_form_validators.form_validator_mixins import FormValidatorMixin
@@ -47,23 +47,21 @@ class PregnancyNotificationFormValidator(PrnFormValidatorMixin, FormValidator):
             self.instance.id is None
             and self.cleaned_data.get("bhcg_confirmed") == YES
             and self.cleaned_data.get("bhcg_date")
+            and not UrinePregnancy.objects.filter(
+                subject_visit__subject_identifier=self.subject_identifier,
+                notified=False,
+                assay_date=self.cleaned_data.get("bhcg_date"),
+            )
+            .exclude(subject_visit__visit_code=DAY1, subject_visit__visit_code_sequence=0)
+            .exists()
         ):
-            if (
-                not UrinePregnancy.objects.filter(
-                    subject_visit__subject_identifier=self.subject_identifier,
-                    notified=False,
-                    assay_date=self.cleaned_data.get("bhcg_date"),
-                )
-                .exclude(subject_visit__visit_code=DAY1, subject_visit__visit_code_sequence=0)
-                .exists()
-            ):
-                self.raise_validation_error(
-                    "Invalid. A positive Urine βhCG cannot be found. "
-                    "Ensure the UPT has been entered, the date matches, and the "
-                    "UPT is not a baseline UPT. "
-                    f"See also PRN CRF {UrinePregnancy._meta.verbose_name}",
-                    INVALID_ERROR,
-                )
+            self.raise_validation_error(
+                "Invalid. A positive Urine βhCG cannot be found. "
+                "Ensure the UPT has been entered, the date matches, and the "
+                "UPT is not a baseline UPT. "
+                f"See also PRN CRF {UrinePregnancy._meta.verbose_name}",
+                INVALID_ERROR,
+            )
 
     def validate_edd(self):
         if (

meta_prn/list_data.py

@@ -1,8 +1,8 @@
-from edc_constants.constants import NOT_APPLICABLE, OTHER
+from clinicedc_constants import NOT_APPLICABLE, OTHER
 
 list_data = {
     "edc_protocol_incident.protocolviolations": [
-        ("failure_to_obtain_informed_consent", "Failure to obtain informed " "consent"),
+        ("failure_to_obtain_informed_consent", "Failure to obtain informed consent"),
         ("enrollment_of_ineligible_patient", "Enrollment of ineligible patient"),
         (
             "screening_procedure_not_done",
@@ -31,7 +31,7 @@ list_data = {
         (NOT_APPLICABLE, "Not applicable"),
     ],
     "edc_protocol_incident.protocolincidents": [
-        ("failure_to_obtain_informed_consent", "Failure to obtain informed " "consent"),
+        ("failure_to_obtain_informed_consent", "Failure to obtain informed consent"),
         ("enrollment_of_ineligible_patient", "Enrollment of ineligible patient"),
         (
             "screening_procedure_not_done",

meta_prn/migrations/0001_initial.py

@@ -9,7 +9,7 @@ import django.db.models.deletion
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
-import django_audit_fields.models.audit_model_mixin
+import django.utils.timezone
 import django_revision.revision_field
 import edc_action_item.managers
 import edc_identifier.managers
@@ -80,14 +80,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -250,14 +250,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -439,14 +439,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -779,14 +779,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -885,14 +885,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -1063,14 +1063,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -1270,14 +1270,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -1496,14 +1496,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -1870,14 +1870,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -2003,14 +2003,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -2222,14 +2222,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -2448,14 +2448,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (

meta_prn/migrations/0017_auto_20220307_1929.py

@@ -8,7 +8,7 @@ import django.db.models.deletion
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
-import django_audit_fields.models.audit_model_mixin
+import django.utils.timezone
 import django_crypto_fields.fields.encrypted_text_field
 import django_revision.revision_field
 import edc_model.validators.date
@@ -64,14 +64,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -383,14 +383,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (