meta-edc 0.3.39__py3-none-any.whl → 1.4.0__py3-none-any.whl

meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py

@@ -0,0 +1,825 @@
+# Generated by Django 6.0 on 2025-02-27 06:56
+
+import _socket
+import django.core.validators
+import django.db.models.deletion
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django.utils.timezone
+import django_revision.revision_field
+import edc_crf.model_mixins.crf_status_model_mixin
+import edc_model.validators.date
+import edc_protocol.validators
+import edc_utils.date
+import edc_visit_tracking.managers
+import simple_history.models
+import uuid
+from django.conf import settings
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+    dependencies = [
+        ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
+        (
+            "meta_subject",
+            "0219_remove_historicalnextappointment_allow_create_interim_and_more",
+        ),
+        ("sites", "0002_alter_domain_unique"),
+        migrations.swappable_dependency(settings.AUTH_USER_MODEL),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="HistoricalBloodResultsGluDummy",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        db_index=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                    ),
+                ),
+                (
+                    "action_identifier",
+                    models.CharField(blank=True, db_index=True, max_length=50, null=True),
+                ),
+                (
+                    "parent_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to parent reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                (
+                    "related_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to related reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                ("action_item_reason", models.TextField(editable=False, null=True)),
+                ("consent_model", models.CharField(blank=True, max_length=50, null=True)),
+                ("consent_version", models.CharField(blank=True, max_length=10, null=True)),
+                (
+                    "report_datetime",
+                    models.DateTimeField(
+                        default=edc_utils.date.get_utcnow,
+                        help_text="If reporting today, use today's date/time, otherwise use the date/time this information was reported.",
+                        validators=[
+                            edc_protocol.validators.datetime_not_before_study_start,
+                            edc_model.validators.date.datetime_not_future,
+                        ],
+                        verbose_name="Report Date",
+                    ),
+                ),
+                (
+                    "assay_datetime",
+                    models.DateTimeField(
+                        blank=True,
+                        null=True,
+                        validators=[edc_model.validators.date.datetime_not_future],
+                        verbose_name="Result assay date and time",
+                    ),
+                ),
+                (
+                    "crf_status",
+                    models.CharField(
+                        choices=[
+                            ("INCOMPLETE", "Incomplete (some data pending)"),
+                            ("COMPLETE", "Complete"),
+                        ],
+                        default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                        help_text="If some data is still pending, flag this CRF as incomplete",
+                        max_length=25,
+                        verbose_name="CRF status",
+                    ),
+                ),
+                (
+                    "crf_status_comments",
+                    models.TextField(
+                        blank=True,
+                        help_text="for example, why some data is still pending",
+                        null=True,
+                        verbose_name="Any comments related to status of this CRF",
+                    ),
+                ),
+                (
+                    "results_abnormal",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        help_text="Abnormal results present at baseline or continuing from baseline not included.",
+                        max_length=25,
+                        verbose_name="Are any of the above results abnormal?",
+                    ),
+                ),
+                (
+                    "results_reportable",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No"), ("N/A", "Not applicable")],
+                        help_text="If YES, this value will open Adverse Event Form. Grade 3 and 4 results present at baseline or continuing from baseline not included",
+                        max_length=25,
+                        verbose_name="If any results are abnormal, are results within grade 3 or above?",
+                    ),
+                ),
+                ("summary", models.TextField(blank=True, null=True)),
+                (
+                    "missing_count",
+                    models.IntegerField(
+                        default=0, editable=False, help_text="A count of fields left blank"
+                    ),
+                ),
+                (
+                    "missing",
+                    models.TextField(
+                        editable=False,
+                        help_text="calculated string of field names that have been left blank",
+                        null=True,
+                    ),
+                ),
+                (
+                    "glucose_value",
+                    models.DecimalField(
+                        blank=True,
+                        decimal_places=2,
+                        max_digits=8,
+                        null=True,
+                        validators=[
+                            django.core.validators.MinValueValidator(1.0),
+                            django.core.validators.MaxValueValidator(9999.99),
+                        ],
+                        verbose_name="Blood Glucose",
+                    ),
+                ),
+                (
+                    "glucose_units",
+                    models.CharField(
+                        blank=True,
+                        choices=[("mg/dL", "mg/dL"), ("mmol/L", "mmol/L (millimoles/L)")],
+                        max_length=15,
+                        null=True,
+                        verbose_name="units",
+                    ),
+                ),
+                (
+                    "glucose_abnormal",
+                    models.CharField(
+                        blank=True,
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=25,
+                        null=True,
+                        verbose_name="abnormal",
+                    ),
+                ),
+                (
+                    "glucose_reportable",
+                    models.CharField(
+                        blank=True,
+                        choices=[
+                            ("N/A", "Not applicable"),
+                            ("3", "Yes, grade 3"),
+                            ("4", "Yes, grade 4"),
+                            ("No", "Not reportable"),
+                            ("Already reported", "Already reported"),
+                            ("present_at_baseline", "Present at baseline"),
+                        ],
+                        max_length=25,
+                        null=True,
+                        verbose_name="reportable",
+                    ),
+                ),
+                (
+                    "glucose_grade",
+                    models.IntegerField(
+                        blank=True,
+                        choices=[
+                            (0, "Not graded"),
+                            (1, "Grade 1"),
+                            (2, "Grade 2"),
+                            (3, "Grade 3"),
+                            (4, "Grade 4"),
+                            (5, "Grade 5"),
+                        ],
+                        null=True,
+                        verbose_name="Grade",
+                    ),
+                ),
+                (
+                    "glucose_grade_description",
+                    models.CharField(
+                        blank=True, max_length=250, null=True, verbose_name="Grade description"
+                    ),
+                ),
+                (
+                    "is_poc",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=15,
+                        null=True,
+                        verbose_name="Was a point-of-care test used?",
+                    ),
+                ),
+                (
+                    "fasting",
+                    models.CharField(
+                        choices=[("fasting", "Fasting"), ("non_fasting", "Non-fasting")],
+                        max_length=25,
+                        null=True,
+                        verbose_name="Was this fasting or non-fasting?",
+                    ),
+                ),
+                (
+                    "glucose_quantifier",
+                    models.CharField(
+                        choices=[
+                            ("=", "="),
+                            (">", ">"),
+                            (">=", ">="),
+                            ("<", "<"),
+                            ("<=", "<="),
+                        ],
+                        default="=",
+                        max_length=10,
+                    ),
+                ),
+                (
+                    "history_id",
+                    models.UUIDField(
+                        default=uuid.uuid4, editable=False, primary_key=True, serialize=False
+                    ),
+                ),
+                ("history_date", models.DateTimeField(db_index=True)),
+                ("history_change_reason", models.CharField(max_length=100, null=True)),
+                (
+                    "history_type",
+                    models.CharField(
+                        choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
+                        max_length=1,
+                    ),
+                ),
+                (
+                    "action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "history_user",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.SET_NULL,
+                        related_name="+",
+                        to=settings.AUTH_USER_MODEL,
+                    ),
+                ),
+                (
+                    "parent_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "related_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "requisition",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        help_text="Start typing the requisition identifier or select one from this visit",
+                        limit_choices_to={"panel__name": "blood_glucose"},
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="meta_subject.subjectrequisition",
+                        verbose_name="Requisition",
+                    ),
+                ),
+                (
+                    "site",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_visit",
+                    models.ForeignKey(
+                        blank=True,
+                        db_constraint=False,
+                        null=True,
+                        on_delete=django.db.models.deletion.DO_NOTHING,
+                        related_name="+",
+                        to="meta_subject.subjectvisit",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "historical Blood Result: Glucose (DUMMY)",
+                "verbose_name_plural": "historical Blood Results: Glucose (DUMMY)",
+                "ordering": ("-history_date", "-history_id"),
+                "get_latest_by": ("history_date", "history_id"),
+            },
+            bases=(simple_history.models.HistoricalChanges, models.Model),
+        ),
+        migrations.CreateModel(
+            name="BloodResultsGluDummy",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        editable=False,
+                        help_text="System field. Git repository tag:branch:commit.",
+                        max_length=75,
+                        null=True,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(blank=True, max_length=10, verbose_name="Device created"),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True, max_length=10, verbose_name="Device modified"
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        null=True,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                        primary_key=True,
+                        serialize=False,
+                    ),
+                ),
+                (
+                    "action_identifier",
+                    models.CharField(blank=True, max_length=50, null=True, unique=True),
+                ),
+                (
+                    "parent_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to parent reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                (
+                    "related_action_identifier",
+                    models.CharField(
+                        blank=True,
+                        help_text="action identifier that links to related reference model instance.",
+                        max_length=30,
+                        null=True,
+                    ),
+                ),
+                ("action_item_reason", models.TextField(editable=False, null=True)),
+                ("consent_model", models.CharField(blank=True, max_length=50, null=True)),
+                ("consent_version", models.CharField(blank=True, max_length=10, null=True)),
+                (
+                    "report_datetime",
+                    models.DateTimeField(
+                        default=edc_utils.date.get_utcnow,
+                        help_text="If reporting today, use today's date/time, otherwise use the date/time this information was reported.",
+                        validators=[
+                            edc_protocol.validators.datetime_not_before_study_start,
+                            edc_model.validators.date.datetime_not_future,
+                        ],
+                        verbose_name="Report Date",
+                    ),
+                ),
+                (
+                    "assay_datetime",
+                    models.DateTimeField(
+                        blank=True,
+                        null=True,
+                        validators=[edc_model.validators.date.datetime_not_future],
+                        verbose_name="Result assay date and time",
+                    ),
+                ),
+                (
+                    "crf_status",
+                    models.CharField(
+                        choices=[
+                            ("INCOMPLETE", "Incomplete (some data pending)"),
+                            ("COMPLETE", "Complete"),
+                        ],
+                        default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
+                        help_text="If some data is still pending, flag this CRF as incomplete",
+                        max_length=25,
+                        verbose_name="CRF status",
+                    ),
+                ),
+                (
+                    "crf_status_comments",
+                    models.TextField(
+                        blank=True,
+                        help_text="for example, why some data is still pending",
+                        null=True,
+                        verbose_name="Any comments related to status of this CRF",
+                    ),
+                ),
+                (
+                    "results_abnormal",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        help_text="Abnormal results present at baseline or continuing from baseline not included.",
+                        max_length=25,
+                        verbose_name="Are any of the above results abnormal?",
+                    ),
+                ),
+                (
+                    "results_reportable",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No"), ("N/A", "Not applicable")],
+                        help_text="If YES, this value will open Adverse Event Form. Grade 3 and 4 results present at baseline or continuing from baseline not included",
+                        max_length=25,
+                        verbose_name="If any results are abnormal, are results within grade 3 or above?",
+                    ),
+                ),
+                ("summary", models.TextField(blank=True, null=True)),
+                (
+                    "missing_count",
+                    models.IntegerField(
+                        default=0, editable=False, help_text="A count of fields left blank"
+                    ),
+                ),
+                (
+                    "missing",
+                    models.TextField(
+                        editable=False,
+                        help_text="calculated string of field names that have been left blank",
+                        null=True,
+                    ),
+                ),
+                (
+                    "glucose_value",
+                    models.DecimalField(
+                        blank=True,
+                        decimal_places=2,
+                        max_digits=8,
+                        null=True,
+                        validators=[
+                            django.core.validators.MinValueValidator(1.0),
+                            django.core.validators.MaxValueValidator(9999.99),
+                        ],
+                        verbose_name="Blood Glucose",
+                    ),
+                ),
+                (
+                    "glucose_units",
+                    models.CharField(
+                        blank=True,
+                        choices=[("mg/dL", "mg/dL"), ("mmol/L", "mmol/L (millimoles/L)")],
+                        max_length=15,
+                        null=True,
+                        verbose_name="units",
+                    ),
+                ),
+                (
+                    "glucose_abnormal",
+                    models.CharField(
+                        blank=True,
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=25,
+                        null=True,
+                        verbose_name="abnormal",
+                    ),
+                ),
+                (
+                    "glucose_reportable",
+                    models.CharField(
+                        blank=True,
+                        choices=[
+                            ("N/A", "Not applicable"),
+                            ("3", "Yes, grade 3"),
+                            ("4", "Yes, grade 4"),
+                            ("No", "Not reportable"),
+                            ("Already reported", "Already reported"),
+                            ("present_at_baseline", "Present at baseline"),
+                        ],
+                        max_length=25,
+                        null=True,
+                        verbose_name="reportable",
+                    ),
+                ),
+                (
+                    "glucose_grade",
+                    models.IntegerField(
+                        blank=True,
+                        choices=[
+                            (0, "Not graded"),
+                            (1, "Grade 1"),
+                            (2, "Grade 2"),
+                            (3, "Grade 3"),
+                            (4, "Grade 4"),
+                            (5, "Grade 5"),
+                        ],
+                        null=True,
+                        verbose_name="Grade",
+                    ),
+                ),
+                (
+                    "glucose_grade_description",
+                    models.CharField(
+                        blank=True, max_length=250, null=True, verbose_name="Grade description"
+                    ),
+                ),
+                (
+                    "is_poc",
+                    models.CharField(
+                        choices=[("Yes", "Yes"), ("No", "No")],
+                        max_length=15,
+                        null=True,
+                        verbose_name="Was a point-of-care test used?",
+                    ),
+                ),
+                (
+                    "fasting",
+                    models.CharField(
+                        choices=[("fasting", "Fasting"), ("non_fasting", "Non-fasting")],
+                        max_length=25,
+                        null=True,
+                        verbose_name="Was this fasting or non-fasting?",
+                    ),
+                ),
+                (
+                    "glucose_quantifier",
+                    models.CharField(
+                        choices=[
+                            ("=", "="),
+                            (">", ">"),
+                            (">=", ">="),
+                            ("<", "<"),
+                            ("<=", "<="),
+                        ],
+                        default="=",
+                        max_length=10,
+                    ),
+                ),
+                (
+                    "action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "parent_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "related_action_item",
+                    models.ForeignKey(
+                        blank=True,
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="edc_action_item.actionitem",
+                    ),
+                ),
+                (
+                    "requisition",
+                    models.ForeignKey(
+                        blank=True,
+                        help_text="Start typing the requisition identifier or select one from this visit",
+                        limit_choices_to={"panel__name": "blood_glucose"},
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="meta_subject.subjectrequisition",
+                        verbose_name="Requisition",
+                    ),
+                ),
+                (
+                    "site",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+                (
+                    "subject_visit",
+                    models.OneToOneField(
+                        on_delete=django.db.models.deletion.PROTECT,
+                        to="meta_subject.subjectvisit",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "Blood Result: Glucose (DUMMY)",
+                "verbose_name_plural": "Blood Results: Glucose (DUMMY)",
+                "abstract": False,
+                "default_permissions": ("add", "change", "delete", "view", "export", "import"),
+                "default_manager_name": "objects",
+                "indexes": [
+                    models.Index(
+                        fields=["subject_visit", "site"], name="meta_subjec_subject_deb149_idx"
+                    ),
+                    models.Index(
+                        fields=["subject_visit", "report_datetime"],
+                        name="meta_subjec_subject_d7610d_idx",
+                    ),
+                ],
+            },
+            managers=[
+                ("objects", edc_visit_tracking.managers.CrfModelManager()),
+                ("on_site", edc_visit_tracking.managers.CrfCurrentSiteManager()),
+            ],
+        ),
+    ]