meta-edc 0.3.39__py3-none-any.whl → 1.4.0__py3-none-any.whl

meta_prn/models/signals.py

@@ -1,7 +1,7 @@
+from clinicedc_constants import YES
 from django.core.exceptions import ObjectDoesNotExist
 from django.db.models.signals import post_save
 from django.dispatch import receiver
-from edc_constants.constants import YES
 from edc_visit_schedule.site_visit_schedules import site_visit_schedules
 
 from meta_subject.models import SubjectVisit, UrinePregnancy
@@ -24,7 +24,7 @@ from .pregnancy_notification import PregnancyNotification
     sender=PregnancyNotification,
     dispatch_uid="update_schedule_on_pregnancy_notification_post_save",
 )
-def update_schedule_on_pregnancy_notification_post_save(sender, instance, raw, **kwargs):
+def update_schedule_on_pregnancy_notification_post_save(sender, instance, raw, **kwargs):  # noqa: ARG001
     if not raw:
         try:
             OffSchedule.objects.get(subject_identifier=instance.subject_identifier)
@@ -58,18 +58,20 @@ def update_schedule_on_pregnancy_notification_post_save(sender, instance, raw, *
     dispatch_uid="update_urine_pregnancy_on_pregnancy_notification_on_post_save",
 )
 def update_urine_pregnancy_on_pregnancy_notification_on_post_save(
-    sender, instance, raw, **kwargs
+    sender,  # noqa: ARG001
+    instance,
+    raw,
+    **kwargs,  # noqa: ARG001
 ):
-    if not raw:
-        if instance.bhcg_confirmed == YES:
-            UrinePregnancy.objects.filter(
-                subject_visit__subject_identifier=instance.subject_identifier,
-                notified=False,
-                assay_date__lte=instance.report_datetime.date(),
-            ).update(
-                notified_datetime=instance.report_datetime,
-                notified=True,
-            )
+    if not raw and instance.bhcg_confirmed == YES:
+        UrinePregnancy.objects.filter(
+            subject_visit__subject_identifier=instance.subject_identifier,
+            notified=False,
+            assay_date__lte=instance.report_datetime.date(),
+        ).update(
+            notified_datetime=instance.report_datetime,
+            notified=True,
+        )
 
 
 @receiver(
@@ -78,7 +80,7 @@ def update_urine_pregnancy_on_pregnancy_notification_on_post_save(
     sender=DmReferral,
     dispatch_uid="update_schedule_on_dm_referral_post_save",
 )
-def update_schedule_on_dm_referral_post_save(sender, instance, raw, **kwargs):
+def update_schedule_on_dm_referral_post_save(sender, instance, raw, **kwargs):  # noqa: ARG001
     if not raw:
         try:
             OffScheduleDmReferral.objects.get(subject_identifier=instance.subject_identifier)

meta_prn/models/subject_transfer.py

@@ -1,3 +1,5 @@
+from django.conf import settings
+from django.db import models
 from edc_model.models import BaseUuidModel
 from edc_transfer.model_mixins import SubjectTransferModelMixin
 
@@ -6,5 +8,10 @@ class SubjectTransfer(
     SubjectTransferModelMixin,
     BaseUuidModel,
 ):
+    transfer_reason = models.ManyToManyField(
+        f"{settings.LIST_MODEL_APP_LABEL}.transferreasons",
+        verbose_name="Reason for transfer",
+    )
+
     class Meta(SubjectTransferModelMixin.Meta, BaseUuidModel.Meta):
         pass

meta_prn/templates/meta_prn/eos/additional_instructions.html

@@ -0,0 +1,3 @@
+{% load i18n %}
+
+{%  translate "Note: If the patient is" %} <i>{%  translate "deceased" %}</i>, {%  translate "complete form" %} `{{ death_report }}` {%  translate "before completing this form" %}. <BR>{%  translate "If the patient is <i>lost to follow up</i>, complete form" %} `{{ ltfu }}` {%  translate "before completing this form." %}

meta_prn/templates/meta_prn/offschedule/additional_instructions.html

@@ -0,0 +1,2 @@
+{% load i18n %}
+<span style="color:orange;font-weight:bold">Note: </span> {% trans "Detailed information about study termination will be asked for on the" %} <b>{{ verbose_name }}</b> {% trans "form" %}

meta_rando/migrations/0001_initial.py

@@ -8,7 +8,7 @@ import django.db.models.manager
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
-import django_audit_fields.models.audit_model_mixin
+import django.utils.timezone
 import django_crypto_fields.fields.encrypted_char_field
 import django_revision.revision_field
 import edc_sites.models
@@ -44,14 +44,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
@@ -202,14 +202,14 @@ class Migration(migrations.Migration):
                     "created",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (
                     "modified",
                     models.DateTimeField(
                         blank=True,
-                        default=django_audit_fields.models.audit_model_mixin.utcnow,
+                        default=django.utils.timezone.now,
                     ),
                 ),
                 (

meta_rando/migrations/0006_alter_historicalrandomizationlist_allocated_user_and_more.py

@@ -0,0 +1,130 @@
+# Generated by Django 5.2.6 on 2025-09-24 05:45
+
+import django_revision.revision_field
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_rando", "0005_alter_randomizationlist_options_and_more"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="allocated_user",
+            field=models.CharField(default="", max_length=50),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrandomizationlist",
+            name="verified_user",
+            field=models.CharField(default="", max_length=50),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="allocated_user",
+            field=models.CharField(default="", max_length=50),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="randomizationlist",
+            name="verified_user",
+            field=models.CharField(default="", max_length=50),
+        ),
+    ]

meta_rando/migrations/0007_spfqlist.py

@@ -0,0 +1,197 @@
+# Generated by Django 5.2.6 on 2025-09-30 05:07
+
+import _socket
+import django.db.models.deletion
+import django.db.models.manager
+import django.utils.timezone
+import django_audit_fields.fields.hostname_modification_field
+import django_audit_fields.fields.userfield
+import django_audit_fields.fields.uuid_auto_field
+import django_revision.revision_field
+import edc_sites.managers
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        (
+            "meta_rando",
+            "0006_alter_historicalrandomizationlist_allocated_user_and_more",
+        ),
+        ("sites", "0002_alter_domain_unique"),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="SpfqList",
+            fields=[
+                (
+                    "revision",
+                    django_revision.revision_field.RevisionField(
+                        blank=True,
+                        default="",
+                        editable=False,
+                        help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                        max_length=75,
+                        verbose_name="Revision",
+                    ),
+                ),
+                (
+                    "created",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "modified",
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
+                ),
+                (
+                    "user_created",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        default="",
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user created",
+                    ),
+                ),
+                (
+                    "user_modified",
+                    django_audit_fields.fields.userfield.UserField(
+                        blank=True,
+                        default="",
+                        help_text="Updated by admin.save_model",
+                        max_length=50,
+                        verbose_name="user modified",
+                    ),
+                ),
+                (
+                    "hostname_created",
+                    models.CharField(
+                        blank=True,
+                        default=_socket.gethostname,
+                        help_text="System field. (modified on create only)",
+                        max_length=60,
+                        verbose_name="Hostname created",
+                    ),
+                ),
+                (
+                    "hostname_modified",
+                    django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
+                        blank=True,
+                        default="",
+                        help_text="System field. (modified on every save)",
+                        max_length=50,
+                        verbose_name="Hostname modified",
+                    ),
+                ),
+                (
+                    "device_created",
+                    models.CharField(
+                        blank=True,
+                        default="",
+                        max_length=10,
+                        verbose_name="Device created",
+                    ),
+                ),
+                (
+                    "device_modified",
+                    models.CharField(
+                        blank=True,
+                        default="",
+                        max_length=10,
+                        verbose_name="Device modified",
+                    ),
+                ),
+                (
+                    "locale_created",
+                    models.CharField(
+                        blank=True,
+                        default="",
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        verbose_name="Locale created",
+                    ),
+                ),
+                (
+                    "locale_modified",
+                    models.CharField(
+                        blank=True,
+                        default="",
+                        help_text="Auto-updated by Modeladmin",
+                        max_length=10,
+                        verbose_name="Locale modified",
+                    ),
+                ),
+                (
+                    "id",
+                    django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
+                        blank=True,
+                        editable=False,
+                        help_text="System auto field. UUID primary key.",
+                        primary_key=True,
+                        serialize=False,
+                    ),
+                ),
+                ("subject_identifier", models.CharField(max_length=50, unique=True)),
+                ("sid", models.IntegerField(unique=True)),
+                ("last_visit_code", models.CharField(max_length=25)),
+                ("last_appt_datetime", models.DateTimeField()),
+                (
+                    "gender",
+                    models.CharField(
+                        choices=[("M", "Male"), ("F", "Female")], max_length=10
+                    ),
+                ),
+                (
+                    "weight_bin",
+                    models.CharField(
+                        choices=[
+                            ("lt_35", "<35"),
+                            ("gte_35__lte_49", "35-49"),
+                            ("gte_50", ">=50"),
+                        ],
+                        max_length=25,
+                    ),
+                ),
+                ("date_generated", models.DateTimeField()),
+                (
+                    "site",
+                    models.ForeignKey(
+                        null=True,
+                        on_delete=django.db.models.deletion.PROTECT,
+                        related_name="+",
+                        to="sites.site",
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "SPFQ List",
+                "verbose_name_plural": "SPFQ List",
+                "abstract": False,
+                "default_permissions": (
+                    "add",
+                    "change",
+                    "delete",
+                    "view",
+                    "export",
+                    "import",
+                ),
+                "default_manager_name": "objects",
+                "indexes": [
+                    models.Index(
+                        fields=["modified", "created"],
+                        name="meta_rando__modifie_f4fcd8_idx",
+                    ),
+                    models.Index(
+                        fields=["user_modified", "user_created"],
+                        name="meta_rando__user_mo_79b855_idx",
+                    ),
+                ],
+            },
+            managers=[
+                ("on_site", edc_sites.managers.CurrentSiteManager()),
+                ("objects", django.db.models.manager.Manager()),
+            ],
+        ),
+    ]

meta_rando/migrations/0008_delete_spfqlist.py

@@ -0,0 +1,16 @@
+# Generated by Django 5.2.6 on 2025-09-30 22:50
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_rando", "0007_spfqlist"),
+    ]
+
+    operations = [
+        migrations.DeleteModel(
+            name="SpfqList",
+        ),
+    ]

meta_rando/models/__init__.py

@@ -0,0 +1 @@
+from .randomization_list import RandomizationList

meta_rando/{models.py → models/randomization_list.py}

@@ -1,12 +1,12 @@
 from django.db import models
 from edc_constants.choices import GENDER
-from edc_model import models as edc_models
+from edc_model.models import BaseUuidModel
 from edc_randomization.model_mixins import RandomizationListModelMixin
 
 
-class RandomizationList(RandomizationListModelMixin, edc_models.BaseUuidModel):
+class RandomizationList(RandomizationListModelMixin, BaseUuidModel):
     gender = models.CharField(max_length=25, choices=GENDER)
 
-    class Meta(RandomizationListModelMixin.Meta, edc_models.BaseUuidModel.Meta):
+    class Meta(RandomizationListModelMixin.Meta, BaseUuidModel.Meta):
         verbose_name = "Randomization List (Phase Three)"
         verbose_name_plural = "Randomization List (Phase Three)"

meta_rando/randomizers.py

@@ -1,4 +1,4 @@
-from edc_constants.constants import FEMALE, MALE
+from clinicedc_constants import FEMALE, MALE
 from edc_randomization.randomization_list_importer import (
     RandomizationListImporter,
     RandomizationListImportError,
@@ -30,7 +30,7 @@ class RandomizerPhaseThree(Randomizer):
     model = "meta_rando.randomizationlist"
     filename = "randomization_list_phase_three.csv"
     importer_cls = RandomizationListImporterPhaseThree
-    extra_csv_fieldnames = ["gender"]
+    extra_csv_fieldnames = ("gender",)
 
     def __init__(self, gender=None, **kwargs):
         self.gender = gender

meta_reports/__init__.py

@@ -1 +1,3 @@
 from .tasks import update_endpoints_table
+
+__all__ = ["update_endpoints_table"]

meta_reports/admin/__init__.py

@@ -13,3 +13,19 @@ from .dbviews import (
 from .endpoints_admin import EndpointsAdmin
 from .endpoints_all_admin import EndpointsAllAdmin
 from .last_imp_refill_admin import LastImpRefillAdmin
+
+__all__ = [
+    "EndpointsAdmin",
+    "EndpointsAllAdmin",
+    "GlucoseSummaryAdmin",
+    "ImpSubstitutionsAdmin",
+    "LastImpRefillAdmin",
+    "MissingOgttNoteModelAdmin",
+    "MissingScreeningOgttAdmin",
+    "OnStudyMissingLabValuesAdmin",
+    "OnStudyMissingValuesAdmin",
+    "PatientHistoryMissingBaselineCd4Admin",
+    "UnattendedThreeInRow2Admin",
+    "UnattendedThreeInRowAdmin",
+    "UnattendedTwoInRowAdmin",
+]

meta_reports/admin/dbviews/__init__.py

@@ -12,3 +12,16 @@ from .patient_history_missing_baseline_cd4_admin import (
 from .unattended_three_in_row2_admin import UnattendedThreeInRow2Admin
 from .unattended_three_in_row_admin import UnattendedThreeInRowAdmin
 from .unattended_two_in_row_admin import UnattendedTwoInRowAdmin
+
+__all__ = [
+    "GlucoseSummaryAdmin",
+    "ImpSubstitutionsAdmin",
+    "MissingOgttNoteModelAdmin",
+    "MissingScreeningOgttAdmin",
+    "OnStudyMissingLabValuesAdmin",
+    "OnStudyMissingValuesAdmin",
+    "PatientHistoryMissingBaselineCd4Admin",
+    "UnattendedThreeInRow2Admin",
+    "UnattendedThreeInRowAdmin",
+    "UnattendedTwoInRowAdmin",
+]

meta_reports/admin/dbviews/glucose_summary_admin.py

@@ -1,8 +1,8 @@
+from clinicedc_constants import YES
 from django.contrib import admin
 from django.core.exceptions import ObjectDoesNotExist
 from django.template.loader import render_to_string
 from django.urls import reverse
-from edc_constants.constants import YES
 from edc_glucose.list_filters import FbgListFilter, OgttListFilter
 from edc_model_admin.dashboard import ModelAdminDashboardMixin
 from edc_model_admin.mixins import TemplatesModelAdminMixin
@@ -23,9 +23,9 @@ class GlucoseSummaryAdmin(
     TemplatesModelAdminMixin,
     admin.ModelAdmin,
 ):
-    ordering = ["site", "subject_identifier", "fbg_datetime"]
+    ordering = ("site", "subject_identifier", "fbg_datetime")
     include_note_column = False
-    list_display = [
+    list_display = (
         "dashboard",
         "subject_identifier_link",
         "site",
@@ -37,9 +37,9 @@ class GlucoseSummaryAdmin(
         "ogtt_date",
         "endpoint",
         "offstudy_date",
-    ]
+    )
 
-    list_filter = [
+    list_filter = (
         ScheduleStatusListFilter,
         "fasted",
         FbgListFilter,
@@ -47,9 +47,9 @@ class GlucoseSummaryAdmin(
         "fbg_datetime",
         "ogtt_datetime",
         EndpointListFilter,
-    ]
+    )
 
-    search_fields = ["subject_identifier"]
+    search_fields = ("subject_identifier",)
 
     @admin.display(description="visit", ordering="visit_code")
     def visit(self, obj=None):

meta_reports/admin/dbviews/imp_substitutions_admin.py

@@ -1,3 +1,5 @@
+import contextlib
+
 from django.apps import apps as django_apps
 from django.contrib import admin
 from django.core.exceptions import ObjectDoesNotExist
@@ -25,8 +27,8 @@ class ImpSubstitutionsAdmin(
     TemplatesModelAdminMixin,
     admin.ModelAdmin,
 ):
-    ordering = ["site", "subject_identifier"]
-    list_display = [
+    ordering = ("site", "subject_identifier")
+    list_display = (
         "dashboard",
         "render_button",
         "subject",
@@ -38,20 +40,20 @@ class ImpSubstitutionsAdmin(
         "user_created",
         "user_modified",
         "modified",
-    ]
+    )
 
-    list_filter = [
+    list_filter = (
         "arm_match",
         ScheduleStatusListFilter,
         ReportDateListFilter,
         "allocated_datetime",
-    ]
+    )
 
-    search_fields = ["subject_identifier", "sid", "dispensed_sid"]
+    search_fields = ("subject_identifier", "sid", "dispensed_sid")
 
     def dashboard(self, obj=None, label=None) -> str:
         kwargs = self.get_subject_dashboard_url_kwargs(obj)
-        try:
+        with contextlib.suppress(ObjectDoesNotExist):
             kwargs.update(
                 appointment=str(
                     Appointment.objects.get(
@@ -61,11 +63,9 @@ class ImpSubstitutionsAdmin(
                     ).id
                 )
             )
-        except ObjectDoesNotExist:
-            pass
         url = reverse(self.get_subject_dashboard_url_name(obj=obj), kwargs=kwargs)
         context = dict(title=_("Go to subject's dashboard@1000"), url=url, label=label)
-        return render_to_string("dashboard_button.html", context=context)
+        return render_to_string("edc_subject_dashboard/dashboard_button.html", context=context)
 
     @admin.display(description="Subject", ordering="subject_identifier")
     def subject(self, obj):
@@ -86,13 +86,14 @@ class ImpSubstitutionsAdmin(
             f"{url}?next={self.admin_site.name}:"
             f"{self.model._meta.label_lower.replace('.', '_')}_changelist"
         )
-        title = _(f"View {crf_model_cls._meta.verbose_name}")
+        title = _("View %(verbose_name)s").format(
+            verbose_name=crf_model_cls._meta.verbose_name
+        )
         label = _("View")
-        crf_button = render_to_string(
+        return render_to_string(
             "edc_qareports/columns/change_button.html",
             context=dict(title=title, url=url, label=label),
         )
-        return crf_button
 
     @admin.display(description="Report date", ordering="report_datetime")
     def report_date(self, obj) -> str | None: