meta-edc 0.3.39__py3-none-any.whl → 1.4.0__py3-none-any.whl

meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py

@@ -0,0 +1,382 @@
+# Generated by Django 5.2.6 on 2025-09-24 05:45
+
+import django.utils.timezone
+import django_revision.revision_field
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_pharmacy", "0009_remove_historicalrx_slug"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="gender",
+            field=models.CharField(default="", max_length=5),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="reference",
+            field=models.CharField(
+                db_index=True, default="", help_text="Bottle reference", max_length=10
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="site_name",
+            field=models.CharField(default="", max_length=15),
+        ),
+        migrations.AlterField(
+            model_name="historicallabeldata",
+            name="subject_identifier",
+            field=models.CharField(default="", max_length=15),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="action_identifier",
+            field=models.CharField(
+                blank=True, db_index=True, default="", max_length=50
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="action_item_reason",
+            field=models.TextField(default="", editable=False),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="clinician_initials",
+            field=models.CharField(default="", max_length=3),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="notes",
+            field=models.TextField(
+                blank=True,
+                default="",
+                help_text="Private notes for pharmacist only",
+                max_length=250,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="parent_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to parent reference model instance.",
+                max_length=30,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="rando_sid",
+            field=models.CharField(blank=True, default="", max_length=25),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="randomizer_name",
+            field=models.CharField(blank=True, default="", max_length=25),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="related_action_identifier",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="action identifier that links to related reference model instance.",
+                max_length=30,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="report_datetime",
+            field=models.DateTimeField(default=django.utils.timezone.now),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalrx",
+            name="rx_date",
+            field=models.DateField(
+                default=django.utils.timezone.now, verbose_name="Date RX written"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="historicalsubstitutions",
+            name="updated_subject_identifier",
+            field=models.CharField(
+                blank=True, default="", max_length=50, verbose_name="Taken from subject"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="gender",
+            field=models.CharField(default="", max_length=5),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="reference",
+            field=models.CharField(
+                default="", help_text="Bottle reference", max_length=10, unique=True
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="site_name",
+            field=models.CharField(default="", max_length=15),
+        ),
+        migrations.AlterField(
+            model_name="labeldata",
+            name="subject_identifier",
+            field=models.CharField(default="", max_length=15),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="device_created",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device created"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="device_modified",
+            field=models.CharField(
+                blank=True, default="", max_length=10, verbose_name="Device modified"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="locale_created",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale created",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="locale_modified",
+            field=models.CharField(
+                blank=True,
+                default="",
+                help_text="Auto-updated by Modeladmin",
+                max_length=10,
+                verbose_name="Locale modified",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="revision",
+            field=django_revision.revision_field.RevisionField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="System field. From git repository (tag:branch:commit), project metadata, project toml, project VERSION, or settings.",
+                max_length=75,
+                verbose_name="Revision",
+            ),
+        ),
+        migrations.AlterField(
+            model_name="substitutions",
+            name="updated_subject_identifier",
+            field=models.CharField(
+                blank=True, default="", max_length=50, verbose_name="Taken from subject"
+            ),
+        ),
+    ]

meta_pharmacy/models/__init__.py

@@ -1,3 +1,10 @@
 from .label_data import LabelData
 from .rx import Rx
 from .substitutions import MyManager, Substitutions
+
+__all__ = [
+    "LabelData",
+    "MyManager",
+    "Rx",
+    "Substitutions",
+]

meta_pharmacy/models/label_data.py

@@ -9,14 +9,13 @@ random.seed(237548)
 
 
 class LabelData(SiteModelMixin, BaseUuidModel):
-
-    subject_identifier = models.CharField(max_length=15, null=True)
+    subject_identifier = models.CharField(max_length=15, default="")
     sid = models.IntegerField(null=True, help_text="Pharmacy reference")
     reference = models.CharField(
-        max_length=10, null=True, unique=True, help_text="Bottle reference"
+        max_length=10, default="", unique=True, help_text="Bottle reference"
     )
-    site_name = models.CharField(max_length=15, null=True)
-    gender = models.CharField(max_length=5, null=True)
+    site_name = models.CharField(max_length=15, default="")
+    gender = models.CharField(max_length=5, default="")
     pills_per_bottle = models.IntegerField(null=True, default=128)
 
     printed_datetime = models.DateTimeField(null=True)

meta_pharmacy/models/rx_label.py

@@ -13,7 +13,6 @@ class LabelIdentifier(SimpleUniqueIdentifier):
 
 
 class RxLabel(BaseUuidModel):
-
     identifier_cls = LabelIdentifier
 
     rx = models.ForeignKey(Rx, on_delete=models.PROTECT)

meta_pharmacy/models/substitutions.py

@@ -1,8 +1,8 @@
+from clinicedc_constants import NO, NOT_EVALUATED, YES
 from django.core.exceptions import ObjectDoesNotExist
 from django.db import models
 from django.db.models import Index
 from edc_constants.choices import YES_NO_NOT_EVALUATED
-from edc_constants.constants import NO, NOT_EVALUATED, YES
 from edc_identifier.model_mixins import NonUniqueSubjectIdentifierFieldMixin
 from edc_model.models import BaseUuidModel, HistoricalRecords
 from edc_sites.managers import CurrentSiteManager
@@ -42,7 +42,7 @@ class Substitutions(NonUniqueSubjectIdentifierFieldMixin, SiteModelMixin, BaseUu
     updated_visit_no = models.IntegerField("Visit Number", null=True, blank=True)
 
     updated_subject_identifier = models.CharField(
-        max_length=50, verbose_name="Taken from subject", null=True, blank=True
+        max_length=50, verbose_name="Taken from subject", default="", blank=True
     )
 
     arm_match = models.CharField(
@@ -82,7 +82,7 @@ class Substitutions(NonUniqueSubjectIdentifierFieldMixin, SiteModelMixin, BaseUu
     class Meta(SiteModelMixin.Meta, BaseUuidModel.Meta):
         verbose_name_plural = "IMP Substitutions"
         verbose_name = "IMP Substitution"
-        indexes = [
+        indexes = (
             Index(fields=["sid", "dispensed_sid", "subject_identifier"]),
             Index(fields=["row_index"]),
-        ]
+        )

meta_pharmacy/prepare_meta_pharmacy.py

@@ -9,7 +9,7 @@ style = color_style()
 
 
 def prepare_meta_pharmacy():
-    from django.apps import apps as django_apps
+    from django.apps import apps as django_apps  # noqa: PLC0415
 
     sys.stdout.write(style.MIGRATE_HEADING("Populating static pharmacy models for META3:\n"))
 

meta_pharmacy/utils/__init__.py

@@ -1 +1,3 @@
 from .update_initial_pharmacy_data import update_initial_pharmacy_data
+
+__all__ = ["update_initial_pharmacy_data"]

meta_pharmacy/utils/update_initial_pharmacy_data.py

@@ -136,7 +136,7 @@ def update_labels():
         LabelSpecification().save()
         default = LabelSpecification.objects.get(name="default")
 
-    for name, label_config in site_label_configs.registry.items():
+    for name in site_label_configs.registry:
         LabelConfiguration.objects.create(name=name, label_specification=default)
     for label_configuration in LabelConfiguration.objects.filter(name__contains="patient"):
         label_configuration.requires_allocation = True

meta_prn/action_items.py

@@ -1,9 +1,9 @@
+from clinicedc_constants import HIGH_PRIORITY, NOT_SURE, TBD, YES
 from django.apps import apps as django_apps
 from django.utils.safestring import mark_safe
 from edc_action_item.action_with_notification import ActionWithNotification
 from edc_action_item.site_action_items import site_action_items
 from edc_adverse_event.constants import DEATH_REPORT_ACTION
-from edc_constants.constants import HIGH_PRIORITY, NOT_SURE, TBD, YES
 from edc_lab_results import BLOOD_RESULTS_RFT_ACTION
 from edc_ltfu.constants import LTFU_ACTION
 from edc_offstudy.constants import END_OF_STUDY_ACTION
@@ -38,12 +38,13 @@ class OffscheduleAction(ActionWithNotification):
     name = OFFSCHEDULE_ACTION
     display_name = "Submit Off-Schedule"
     notification_display_name = "Off-Schedule"
-    parent_action_names = [
+    parent_action_names = (
         UNBLINDING_REVIEW_ACTION,
         DEATH_REPORT_ACTION,
         LTFU_ACTION,
         BLOOD_RESULTS_RFT_ACTION,
-    ]
+        SUBJECT_TRANSFER_ACTION,
+    )
     reference_model = "meta_prn.offschedule"
     show_link_to_changelist = True
     admin_site_name = "meta_prn_admin"
@@ -68,12 +69,13 @@ class OffschedulePregnancyAction(ActionWithNotification):
     name = OFFSCHEDULE_PREGNANCY_ACTION
     display_name = "Submit Off-Schedule (Pregnancy)"
     notification_display_name = "Off-Schedule (Pregnancy)"
-    parent_action_names = [
+    parent_action_names = (
         UNBLINDING_REVIEW_ACTION,
         DEATH_REPORT_ACTION,
         LTFU_ACTION,
+        SUBJECT_TRANSFER_ACTION,
         DELIVERY_ACTION,
-    ]
+    )
     reference_model = "meta_prn.offschedulepregnancy"
     show_link_to_changelist = True
     admin_site_name = "meta_prn_admin"
@@ -81,20 +83,39 @@ class OffschedulePregnancyAction(ActionWithNotification):
     singleton = True
 
     def get_next_actions(self):
-        next_actions = [END_OF_STUDY_ACTION]
-        return next_actions
+        return [END_OF_STUDY_ACTION]
+
+
+class OffscheduleDmReferralAction(ActionWithNotification):
+    name = OFFSCHEDULE_DM_REFERRAL_ACTION
+    display_name = "Submit Off-Schedule (Diabetes Referral)"
+    notification_display_name = "Off-Schedule (Diabetes Referral)"
+    parent_action_names = (
+        DM_FOLLOWUP_ACTION,
+        DEATH_REPORT_ACTION,
+        LTFU_ACTION,
+        SUBJECT_TRANSFER_ACTION,
+    )
+    reference_model = "meta_prn.offscheduledmreferral"
+    show_link_to_changelist = True
+    admin_site_name = "meta_prn_admin"
+    priority = HIGH_PRIORITY
+    singleton = True
+
+    def get_next_actions(self):
+        return [END_OF_STUDY_ACTION]
 
 
 class EndOfStudyAction(ActionWithNotification):
     name = END_OF_STUDY_ACTION
     display_name = "Submit End of Study Report"
     notification_display_name = "End of Study Report"
-    parent_action_names = [
-        # OFFSCHEDULE_ACTION,
+    parent_action_names = (
+        OFFSCHEDULE_ACTION,
         OFFSTUDY_MEDICATION_ACTION,
         OFFSCHEDULE_PREGNANCY_ACTION,
         OFFSCHEDULE_DM_REFERRAL_ACTION,
-    ]
+    )
     reference_model = "meta_prn.endofstudy"
     show_link_to_changelist = True
     admin_site_name = "meta_prn_admin"
@@ -106,7 +127,7 @@ class LossToFollowupAction(PregnancyActionItemMixin, ActionWithNotification):
     name = LTFU_ACTION
     display_name = "Submit Loss to Follow Up Report"
     notification_display_name = " Loss to Follow Up Report"
-    parent_action_names = [MISSED_VISIT_ACTION]
+    parent_action_names = (MISSED_VISIT_ACTION,)
     reference_model = "meta_prn.losstofollowup"
     show_link_to_changelist = True
     show_link_to_add = True
@@ -115,15 +136,14 @@ class LossToFollowupAction(PregnancyActionItemMixin, ActionWithNotification):
     singleton = True
 
     def get_next_actions(self):
-        next_actions = [self.get_next_offschedule_action(), OFFSTUDY_MEDICATION_ACTION]
-        return next_actions
+        return [self.get_next_offschedule_action(), OFFSTUDY_MEDICATION_ACTION]
 
 
 class PregnancyNotificationAction(ActionWithNotification):
     name = PREGNANCY_NOTIFICATION_ACTION
     display_name = "Submit Pregnancy Notification"
     notification_display_name = "Pregnancy Notification"
-    parent_action_names = [URINE_PREGNANCY_ACTION]
+    parent_action_names = (URINE_PREGNANCY_ACTION,)
     reference_model = "meta_prn.pregnancynotification"
     show_link_to_changelist = True
     show_link_to_add = True
@@ -137,7 +157,7 @@ class DmReferralAction(ActionWithNotification):
     name = DM_REFFERAL_ACTION
     display_name = "Diabetes referral"
     notification_display_name = "Diabetes referral"
-    parent_action_names = [OFFSTUDY_MEDICATION_ACTION]
+    parent_action_names = (OFFSTUDY_MEDICATION_ACTION,)
     reference_model = "meta_prn.dmreferral"
     show_link_to_changelist = True
     show_link_to_add = True
@@ -146,36 +166,19 @@ class DmReferralAction(ActionWithNotification):
     singleton = True
 
     def get_next_actions(self):
-        next_actions = [DM_FOLLOWUP_ACTION]
-        return next_actions
-
-
-class OffscheduleDmReferralAction(ActionWithNotification):
-    name = OFFSCHEDULE_DM_REFERRAL_ACTION
-    display_name = "Submit Off-Schedule (Diabetes Referral)"
-    notification_display_name = "Off-Schedule (Diabetes Referral)"
-    parent_action_names = [DM_FOLLOWUP_ACTION]
-    reference_model = "meta_prn.offscheduledmreferral"
-    show_link_to_changelist = True
-    admin_site_name = "meta_prn_admin"
-    priority = HIGH_PRIORITY
-    singleton = True
-
-    def get_next_actions(self):
-        next_actions = [END_OF_STUDY_ACTION]
-        return next_actions
+        return [DM_FOLLOWUP_ACTION]
 
 
 class OffStudyMedicationAction(ActionWithNotification):
     name = OFFSTUDY_MEDICATION_ACTION
     display_name = "Withdrawal Study Medication"
     notification_display_name = "Withdrawal Study Medication"
-    parent_action_names = [
+    parent_action_names = (
         OFFSCHEDULE_ACTION,
         LTFU_ACTION,
         SUBJECT_TRANSFER_ACTION,
         DEATH_REPORT_ACTION,
-    ]
+    )
     reference_model = "meta_prn.offstudymedication"
     show_link_to_changelist = True
     show_link_to_add = True
@@ -195,7 +198,7 @@ class UnblindingRequestAction(ActionWithNotification):
     name = UNBLINDING_REQUEST_ACTION
     display_name = "Unblinding request"
     notification_display_name = " Unblinding request"
-    parent_action_names = []
+    parent_action_names = ()
     reference_model = "edc_unblinding.unblindingrequest"
     show_link_to_changelist = True
     show_link_to_add = True
@@ -203,20 +206,18 @@ class UnblindingRequestAction(ActionWithNotification):
     priority = HIGH_PRIORITY
 
     def get_next_actions(self):
-        next_actions = []
-        next_actions = self.append_to_next_if_required(
-            next_actions=next_actions,
+        return self.append_to_next_if_required(
+            next_actions=[],
             action_name=UNBLINDING_REVIEW_ACTION,
             required=self.reference_obj.approved == TBD,
         )
-        return next_actions
 
 
 class UnblindingReviewAction(PregnancyActionItemMixin, ActionWithNotification):
     name = UNBLINDING_REVIEW_ACTION
     display_name = "Unblinding review pending"
     notification_display_name = " Unblinding review needed"
-    parent_action_names = [UNBLINDING_REQUEST_ACTION]
+    parent_action_names = (UNBLINDING_REQUEST_ACTION,)
     reference_model = "edc_unblinding.unblindingreview"
     show_link_to_changelist = True
     admin_site_name = "edc_unblinding_admin"
@@ -228,13 +229,11 @@ class UnblindingReviewAction(PregnancyActionItemMixin, ActionWithNotification):
     )
 
     def get_next_actions(self):
-        next_actions = []
-        next_actions = self.append_to_next_if_required(
-            next_actions=next_actions,
+        return self.append_to_next_if_required(
+            next_actions=[],
             action_name=self.get_next_offschedule_action(),
             required=self.reference_obj.approved == YES,
         )
-        return next_actions
 
 
 class SubjectTransferAction(PregnancyActionItemMixin, BaseSubjectTransferAction):