meta-edc 0.3.15__py3-none-any.whl → 0.3.50__py3-none-any.whl
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- meta_ae/action_items.py +2 -2
- meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
- meta_ae/tests/holidays.csv +1 -1
- meta_analytics/README.rst +17 -0
- meta_analytics/dataframes/__init__.py +19 -0
- meta_analytics/dataframes/constants.py +33 -0
- meta_analytics/dataframes/enrolled/__init__.py +1 -0
- meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
- meta_analytics/dataframes/get_eos_df.py +26 -0
- meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
- meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
- meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
- meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
- meta_analytics/dataframes/screening/__init__.py +2 -0
- meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
- meta_analytics/dataframes/screening/get_screening_df.py +163 -0
- meta_analytics/dataframes/utils.py +65 -0
- meta_analytics/get_tables.py +81 -0
- meta_analytics/tables/__init__.py +2 -0
- meta_analytics/tables/eligible.py +106 -0
- meta_analytics/tables/enrolled/__init__.py +0 -0
- meta_analytics/tables/enrolled/glucose.py +28 -0
- meta_analytics/tables/has_dm.py +61 -0
- meta_analytics/tests/__init__.py +0 -0
- meta_analytics/tests/test_endpoints_by_date.py +94 -0
- meta_auth/auth_objects.py +22 -0
- meta_auth/auths.py +18 -3
- meta_consent/action_items.py +18 -1
- meta_consent/admin/__init__.py +1 -0
- meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
- meta_consent/baker_recipes.py +1 -0
- meta_consent/consents.py +20 -1
- meta_consent/constants.py +1 -0
- meta_consent/forms/__init__.py +1 -0
- meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
- meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
- meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
- meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
- meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
- meta_consent/models/__init__.py +1 -0
- meta_consent/models/signals.py +18 -0
- meta_consent/models/subject_consent_v1_ext.py +29 -0
- meta_consent/tests/holidays.csv +1 -1
- meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
- meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
- meta_dashboard/navbars.py +3 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
- meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
- meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
- meta_dashboard/tests/holidays.csv +1 -1
- meta_dashboard/tests/urls.py +0 -1
- meta_dashboard/view_utils/__init__.py +6 -0
- meta_dashboard/view_utils/subject_screening_button.py +2 -2
- meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
- meta_edc/__init__.py +7 -0
- meta_edc/celery.py +4 -13
- meta_edc/celery_live.py +18 -0
- meta_edc/celery_uat.py +24 -0
- meta_edc/management/commands/update_forms_reference.py +6 -2
- meta_edc/migrations/__init__.py +0 -0
- meta_edc/navbars.py +2 -1
- meta_edc/settings/debug.py +10 -2
- meta_edc/settings/defaults.py +58 -43
- meta_edc/templates/meta_edc/bootstrap3/home.html +5 -2
- meta_edc/tests/tests/test_endpoints.py +2 -0
- meta_edc/urls.py +4 -1
- meta_edc/wsgi.py +1 -1
- meta_edc/wsgi_live.py +1 -1
- meta_edc/wsgi_uat.py +1 -1
- meta_edc-0.3.50.dist-info/AUTHORS +0 -0
- meta_edc-0.3.50.dist-info/METADATA +766 -0
- {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/RECORD +316 -127
- {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
- {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
- meta_pharmacy/admin/__init__.py +2 -0
- meta_pharmacy/admin/rx_admin.py +75 -0
- meta_pharmacy/admin/substitutions_admin.py +67 -0
- meta_pharmacy/admin_site.py +9 -0
- meta_pharmacy/apps.py +5 -0
- meta_pharmacy/constants.py +10 -0
- meta_pharmacy/forms/__init__.py +2 -0
- meta_pharmacy/forms/rx_form.py +16 -0
- meta_pharmacy/forms/substitutions_form.py +54 -0
- meta_pharmacy/label_configs.py +30 -0
- meta_pharmacy/labels/__init__.py +5 -0
- meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
- meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
- meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
- meta_pharmacy/labels/label_data.py +14 -0
- meta_pharmacy/labels/print_sheets.py +97 -0
- meta_pharmacy/list_data.py +8 -0
- meta_pharmacy/management/__init__.py +0 -0
- meta_pharmacy/management/commands/__init__.py +0 -0
- meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
- meta_pharmacy/migrations/0002_initial.py +695 -0
- meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
- meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
- meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
- meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
- meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
- meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
- meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
- meta_pharmacy/models/__init__.py +3 -0
- meta_pharmacy/models/label_data.py +38 -0
- meta_pharmacy/models/rx.py +18 -0
- meta_pharmacy/models/rx_label.py +39 -0
- meta_pharmacy/models/substitutions.py +88 -0
- meta_pharmacy/urls.py +8 -0
- meta_pharmacy/utils/__init__.py +1 -0
- meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
- meta_prn/action_items.py +9 -1
- meta_prn/admin/pregnancy_notification_admin.py +6 -2
- meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
- meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
- meta_prn/tests/tests/test_dm_referral.py +3 -6
- meta_reports/__init__.py +1 -0
- meta_reports/admin/__init__.py +15 -0
- meta_reports/admin/dbviews/__init__.py +14 -0
- meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
- meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
- meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
- meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
- meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
- meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
- meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
- meta_reports/admin/endpoints_admin.py +14 -0
- meta_reports/admin/endpoints_all_admin.py +13 -0
- meta_reports/admin/last_imp_refill_admin.py +181 -0
- meta_reports/admin/list_filters.py +30 -0
- meta_reports/admin/modeladmin_mixins.py +112 -0
- meta_reports/admin_site.py +5 -0
- meta_reports/apps.py +1 -16
- meta_reports/forms/__init__.py +1 -0
- meta_reports/forms/missing_ogtt_note_form.py +33 -0
- meta_reports/management/__init__.py +0 -0
- meta_reports/management/commands/__init__.py +0 -0
- meta_reports/management/commands/generate_endpoints.py +13 -0
- meta_reports/migrations/0001_initial.py +87 -0
- meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
- meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
- meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
- meta_reports/migrations/0005_endpoints.py +47 -0
- meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
- meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
- meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
- meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
- meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
- meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
- meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
- meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
- meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
- meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
- meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
- meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
- meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
- meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
- meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
- meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
- meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
- meta_reports/migrations/0024_glucosesummary.py +38 -0
- meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
- meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
- meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
- meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
- meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
- meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
- meta_reports/migrations/0031_endpointsproxy.py +25 -0
- meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
- meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
- meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
- meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
- meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
- meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
- meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
- meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
- meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
- meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
- meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
- meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
- meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
- meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
- meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
- meta_reports/migrations/0047_impsubstitutions.py +56 -0
- meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
- meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
- meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
- meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
- meta_reports/migrations/0052_lastimpvisit.py +57 -0
- meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
- meta_reports/models/__init__.py +16 -0
- meta_reports/models/dbviews/README +14 -0
- meta_reports/models/dbviews/__init__.py +9 -0
- meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
- meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
- meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
- meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
- meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
- meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
- meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
- meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
- meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
- meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
- meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
- meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
- meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
- meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
- meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
- meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
- meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
- meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
- meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
- meta_reports/models/endpoints.py +31 -0
- meta_reports/models/endpoints_proxy.py +11 -0
- meta_reports/models/last_imp_refill.py +34 -0
- meta_reports/tasks.py +12 -0
- meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
- meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
- meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
- meta_reports/tests/test_sql_gen.py +5 -0
- meta_reports/urls.py +8 -0
- meta_reports/utils.py +0 -0
- meta_screening/admin/subject_screening_admin.py +1 -0
- meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
- meta_screening/tests/holidays.csv +1 -1
- meta_screening/tests/meta_test_case_mixin.py +15 -0
- meta_sites/tests/test_sites.py +1 -1
- meta_subject/action_items.py +2 -2
- meta_subject/admin/__init__.py +2 -1
- meta_subject/admin/birth_outcome_admin.py +2 -0
- meta_subject/admin/blood_results/__init__.py +1 -1
- meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
- meta_subject/admin/diabetes/__init__.py +1 -1
- meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
- meta_subject/admin/glucose_fbg_admin.py +4 -0
- meta_subject/admin/other_arv_regimens_admin.py +2 -0
- meta_subject/admin/study_medication_admin.py +10 -0
- meta_subject/form_validators/__init__.py +1 -1
- meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
- meta_subject/forms/__init__.py +2 -2
- meta_subject/forms/blood_results/__init__.py +1 -1
- meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
- meta_subject/forms/diabetes/__init__.py +1 -2
- meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
- meta_subject/forms/study_medication_form.py +35 -0
- meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
- meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
- meta_subject/metadata_rules/metadata_rules.py +7 -0
- meta_subject/metadata_rules/predicates.py +45 -8
- meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
- meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
- meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
- meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
- meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
- meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
- meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
- meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
- meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
- meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
- meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
- meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
- meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
- meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
- meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
- meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
- meta_subject/models/__init__.py +3 -2
- meta_subject/models/birth_outcomes.py +6 -1
- meta_subject/models/blood_results/__init__.py +1 -1
- meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +3 -3
- meta_subject/models/diabetes/__init__.py +1 -2
- meta_subject/models/diabetes/dm_endpoint.py +61 -0
- meta_subject/models/glucose.py +4 -1
- meta_subject/models/physical_exam.py +1 -0
- meta_subject/models/signals.py +19 -0
- meta_subject/models/todo.txt +1 -1
- meta_subject/static/meta_subject/slider.css +1 -1
- meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
- meta_subject/templates/meta_subject/widgets/slider.html +0 -1
- meta_subject/tests/holidays.csv +1 -1
- meta_subject/tests/tests/test_medication_adherence.py +5 -1
- meta_subject/tests/tests/test_metadata_rules.py +2 -2
- meta_subject/tests/tests/test_mnsi.py +212 -121
- meta_subject/tests/tests/test_sf12.py +0 -12
- meta_visit_schedule/constants.py +4 -0
- meta_visit_schedule/tests/tests/test_schedule.py +4 -0
- meta_visit_schedule/visit_schedules/phase_three/crfs.py +75 -13
- meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
- meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -1
- tests/etc/randomization_list.csv +1 -1
- {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
- tests/holidays.csv +1 -1
- {meta_edc/tests → tests}/test_settings.py +16 -6
- meta_edc/tests/etc/user-aes-local.key +0 -1
- meta_edc/tests/etc/user-aes-restricted.key +0 -0
- meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
- meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
- meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
- meta_edc/tests/etc/user-salt-local.key +0 -0
- meta_edc/tests/etc/user-salt-restricted.key +0 -0
- meta_edc-0.3.15.dist-info/METADATA +0 -88
- meta_reports/tests/holidays.csv +0 -15
- meta_subject/admin/diabetes/dm_diagnosis_admin.py +0 -89
- meta_subject/form_validators/dm_diagnosis_form_validator.py +0 -38
- meta_subject/form_validators/dm_dx_result_form_validator.py +0 -7
- meta_subject/forms/diabetes/dm_diagnosis_form.py +0 -13
- meta_subject/forms/diabetes/dm_dx_result_form.py +0 -11
- meta_subject/models/diabetes/dm_diagnosis.py +0 -50
- meta_subject/models/diabetes/dm_dx_result.py +0 -70
- /meta_edc-0.3.15.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
- /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
- /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
- {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -8,7 +8,7 @@ msgid ""
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8
8
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msgstr ""
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9
9
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"Project-Id-Version: PACKAGE VERSION\n"
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10
10
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"Report-Msgid-Bugs-To: \n"
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11
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-
"POT-Creation-Date:
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11
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+
"POT-Creation-Date: 2024-11-19 23:35+0300\n"
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12
12
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"PO-Revision-Date: YEAR-MO-DA HO:MI+ZONE\n"
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"Last-Translator: FULL NAME <EMAIL@ADDRESS>\n"
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14
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"Language-Team: LANGUAGE <LL@li.org>\n"
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@@ -17,6 +17,15 @@ msgstr ""
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17
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"Content-Type: text/plain; charset=UTF-8\n"
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18
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"Content-Transfer-Encoding: 8bit\n"
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19
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"Plural-Forms: nplurals=2; plural=(n != 1);\n"
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20
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-
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20
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+
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21
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+
#: meta_dashboard/view_utils/subject_screening_button.py:42
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22
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+
msgid "View"
|
23
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+
msgstr ""
|
24
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+
|
25
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+
#: meta_dashboard/view_utils/subject_screening_button.py:44
|
26
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+
msgid "Edit"
|
27
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+
msgstr ""
|
28
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+
|
29
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+
#: meta_dashboard/views/subject/dashboard/dashboard_view.py:17
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msgid "Audit"
|
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31
|
msgstr ""
|
meta_dashboard/navbars.py
CHANGED
@@ -1,6 +1,7 @@
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|
1
1
|
from edc_adverse_event.navbars import ae_navbar_item, tmg_navbar_item
|
2
2
|
from edc_data_manager.navbar_item import dm_navbar_item
|
3
3
|
from edc_navbar import Navbar, NavbarItem, site_navbars
|
4
|
+
from edc_pharmacy.navbars import pharmacy_navbar_item
|
4
5
|
from edc_review_dashboard.navbars import navbar_item as review_navbar_item
|
5
6
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|
6
7
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no_url_namespace = False # True if settings.APP_NAME == "meta_dashboard" else False
|
@@ -32,9 +33,10 @@ navbar.register(
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32
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)
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)
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34
35
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36
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+
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37
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+
navbar.register(pharmacy_navbar_item)
|
35
38
|
navbar.register(review_navbar_item)
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36
39
|
navbar.register(tmg_navbar_item)
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37
40
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navbar.register(ae_navbar_item)
|
38
41
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navbar.register(dm_navbar_item)
|
39
|
-
|
40
42
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site_navbars.register(navbar)
|
@@ -12,4 +12,4 @@
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12
12
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class="btn btn-sm btn-{% if p3 == YES %}success{% elif p1 == YES and p2 == YES and p3 == TBD %}warning{% else %}default{% endif %}"
|
13
13
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{% if p3_enabled %}href="{{ href_p3 }}"{% else %} disabled {% endif %}>
|
14
14
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<i class="fas fa-pencil-alt fa-sm"></i> P3
|
15
|
-
</a>
|
15
|
+
</a>
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@@ -0,0 +1,24 @@
|
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1
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+
{% extends 'edc_subject_dashboard/bootstrap3/dashboard/sidebar.html' %}
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2
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+
{% load edc_subject_dashboard_extras %}
|
3
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+
|
4
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+
{% block consents %}
|
5
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+
{{ block.super }}
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6
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+
{% if subject_consent_v1_ext %}
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7
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+
<table class="table table-condensed">
|
8
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+
<thead></thead>
|
9
|
+
<tbody>
|
10
|
+
<tr>
|
11
|
+
<td class="{% if subject_consent_v1_ext %}default{% else %}warning{% endif %}">
|
12
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+
{% render_subject_consent_dashboard_button subject_consent_v1_ext appointment %}
|
13
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+
</td>
|
14
|
+
<td class="{% if subject_consent_v1_ext %}default{% else %}warning{% endif %}">
|
15
|
+
<span class="h6">{{ subject_consent_v1_ext.verbose_name|title }} <span class="text {% if subject_consent_v1_ext.agrees_to_extension == YES %}text-success{% else %}text-danger{% endif %}">{{ subject_consent_v1_ext.agrees_to_extension }}</span>
|
16
|
+
<span class="text text-muted">{{ subject_consent_v1_ext.report_datetime|date:"SHORT_DATE_FORMAT"}}</span>
|
17
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+
</span>
|
18
|
+
</td>
|
19
|
+
</tr>
|
20
|
+
</tbody>
|
21
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+
</table>
|
22
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+
{% endif %}
|
23
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+
|
24
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+
{% endblock consents %}
|
@@ -9,7 +9,7 @@ from edc_dashboard.url_names import url_names
|
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9
9
|
from edc_dashboard.utils import get_bootstrap_version
|
10
10
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|
11
11
|
from meta_consent.models import SubjectConsent
|
12
|
-
from meta_dashboard.view_utils
|
12
|
+
from meta_dashboard.view_utils import (
|
13
13
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SubjectScreeningPartOneButton,
|
14
14
|
SubjectScreeningPartThreeButton,
|
15
15
|
SubjectScreeningPartTwoButton,
|
meta_dashboard/tests/urls.py
CHANGED
@@ -47,7 +47,6 @@ urlpatterns = [
|
|
47
47
|
path("edc_export/", include("edc_export.urls")),
|
48
48
|
path("edc_lab_dashboard/", include("edc_lab_dashboard.urls")),
|
49
49
|
path("edc_locator/", include("edc_locator.urls")),
|
50
|
-
path("edc_pharmacy_dashboard/", include("edc_pharmacy_dashboard.urls")),
|
51
50
|
path("edc_protocol/", include("edc_protocol.urls")),
|
52
51
|
path("edc_subject_dashboard/", include("edc_subject_dashboard.urls")),
|
53
52
|
path("edc_visit_schedule/", include("edc_visit_schedule.urls")),
|
@@ -5,10 +5,10 @@ from typing import Type
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5
5
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|
6
6
|
from django.utils.translation import gettext as _
|
7
7
|
from edc_constants.constants import TBD, YES
|
8
|
-
from edc_subject_dashboard.view_utils import
|
9
|
-
from edc_subject_dashboard.view_utils.subject_screening_button import (
|
8
|
+
from edc_subject_dashboard.view_utils import (
|
10
9
|
SubjectScreeningButton as BaseSubjectScreeningButton,
|
11
10
|
)
|
11
|
+
from edc_view_utils import ADD, CHANGE, VIEW
|
12
12
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|
13
13
|
from meta_screening.models import ScreeningPartOne, ScreeningPartThree, ScreeningPartTwo
|
14
14
|
|
@@ -1,9 +1,47 @@
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|
1
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+
from typing import Any
|
2
|
+
|
3
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+
from django.apps import apps as django_apps
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4
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+
from django.core.checks import messages
|
5
|
+
from django.core.exceptions import ObjectDoesNotExist
|
6
|
+
from django.urls import reverse
|
7
|
+
from django.utils.html import format_html
|
1
8
|
from django.utils.translation import gettext_lazy as _
|
2
9
|
from edc_subject_dashboard.views import SubjectDashboardView
|
3
10
|
|
11
|
+
from meta_reports.models import Endpoints, GlucoseSummary
|
12
|
+
|
4
13
|
|
5
14
|
class DashboardView(SubjectDashboardView):
|
6
15
|
consent_model = "meta_consent.subjectconsentv1"
|
7
16
|
navbar_selected_item = "consented_subject"
|
8
17
|
visit_model = "meta_subject.subjectvisit"
|
9
18
|
history_button_label = _("Audit")
|
19
|
+
|
20
|
+
def get_context_data(self, **kwargs) -> dict[str, Any]:
|
21
|
+
"""Add message if subject reaches DM Endpoint."""
|
22
|
+
context = super().get_context_data(**kwargs)
|
23
|
+
context.update(subject_consent_v1_ext=self.subject_consent_v1_ext)
|
24
|
+
try:
|
25
|
+
Endpoints.objects.get(subject_identifier=self.subject_identifier)
|
26
|
+
except ObjectDoesNotExist:
|
27
|
+
pass
|
28
|
+
else:
|
29
|
+
url = reverse("meta_reports_admin:meta_reports_glucosesummary_changelist")
|
30
|
+
url = f"{url}?q={self.subject_identifier}"
|
31
|
+
message = _(
|
32
|
+
format_html(
|
33
|
+
f"Subject has reached the protocol endpoint. "
|
34
|
+
f'See <A href="{url}">{GlucoseSummary._meta.verbose_name}</A>'
|
35
|
+
)
|
36
|
+
)
|
37
|
+
self.message_user(message, level=messages.WARNING)
|
38
|
+
return context
|
39
|
+
|
40
|
+
@property
|
41
|
+
def subject_consent_v1_ext(self):
|
42
|
+
model_cls = django_apps.get_model("meta_consent.subjectconsentv1ext")
|
43
|
+
try:
|
44
|
+
obj = model_cls.objects.get(subject_identifier=self.subject_identifier)
|
45
|
+
except ObjectDoesNotExist:
|
46
|
+
obj = None
|
47
|
+
return obj
|
meta_edc/__init__.py
CHANGED
@@ -1,7 +1,14 @@
|
|
1
1
|
import os
|
2
2
|
from importlib.metadata import PackageNotFoundError, version
|
3
3
|
|
4
|
+
from .celery import app as celery_app
|
5
|
+
|
4
6
|
try:
|
5
7
|
__version__ = version(os.getcwd().split(os.sep)[-1])
|
6
8
|
except PackageNotFoundError:
|
7
9
|
__version__ = None
|
10
|
+
|
11
|
+
|
12
|
+
__all__ = ["celery_app", "__version__"]
|
13
|
+
|
14
|
+
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
|
meta_edc/celery.py
CHANGED
@@ -1,23 +1,14 @@
|
|
1
|
-
from __future__ import absolute_import, unicode_literals
|
2
|
-
|
3
1
|
import os
|
4
2
|
|
5
3
|
from celery import Celery
|
6
|
-
from django.conf import settings
|
7
4
|
|
8
|
-
#
|
9
|
-
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings")
|
5
|
+
# load settings
|
6
|
+
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
|
10
7
|
|
8
|
+
# config celery
|
11
9
|
app = Celery("meta_edc")
|
12
|
-
|
13
|
-
# Using a string here means the worker doesn't have to serialize
|
14
|
-
# the configuration object to child processes.
|
15
|
-
# - namespace='CELERY' means all celery-related configuration keys
|
16
|
-
# should have a `CELERY_` prefix.
|
17
10
|
app.config_from_object("django.conf:settings", namespace="CELERY")
|
18
|
-
|
19
|
-
# Load task modules from all registered Django app configs.
|
20
|
-
app.autodiscover_tasks(lambda: settings.INSTALLED_APPS)
|
11
|
+
app.autodiscover_tasks()
|
21
12
|
|
22
13
|
|
23
14
|
@app.task(bind=True)
|
meta_edc/celery_live.py
ADDED
@@ -0,0 +1,18 @@
|
|
1
|
+
import os
|
2
|
+
|
3
|
+
from celery import Celery
|
4
|
+
|
5
|
+
# load settings
|
6
|
+
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
|
7
|
+
|
8
|
+
# config celery
|
9
|
+
app = Celery("meta_edc")
|
10
|
+
app.config_from_object("django.conf:settings", namespace="CELERY")
|
11
|
+
app.autodiscover_tasks()
|
12
|
+
|
13
|
+
# app.conf.task_routes = {"*": {"queue": "live_queue"}}
|
14
|
+
|
15
|
+
|
16
|
+
@app.task(bind=True)
|
17
|
+
def debug_task(self):
|
18
|
+
print("Request: {0!r}".format(self.request))
|
meta_edc/celery_uat.py
ADDED
@@ -0,0 +1,24 @@
|
|
1
|
+
import os
|
2
|
+
|
3
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+
from celery import Celery
|
4
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+
|
5
|
+
# from kombu import Queue
|
6
|
+
|
7
|
+
# load settings
|
8
|
+
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "meta_edc.settings.debug")
|
9
|
+
|
10
|
+
# config celery
|
11
|
+
app = Celery("meta_edc")
|
12
|
+
app.config_from_object("django.conf:settings", namespace="CELERY")
|
13
|
+
app.autodiscover_tasks()
|
14
|
+
|
15
|
+
# app.conf.task_default_queue = "workuatq1"
|
16
|
+
# app.conf.task_queues = (Queue("workuatq1", routing_key="task.#"),)
|
17
|
+
# app.conf.task_default_exchange = "workuatq1"
|
18
|
+
# app.conf.task_default_exchange_type = "topic"
|
19
|
+
# app.conf.task_default_routing_key = "task.workuatq1"
|
20
|
+
|
21
|
+
|
22
|
+
@app.task(bind=True)
|
23
|
+
def debug_task(self):
|
24
|
+
print("Request: {0!r}".format(self.request))
|
@@ -20,9 +20,13 @@ def update_forms_reference(sender=None, **kwargs):
|
|
20
20
|
doc_folder = os.path.join(settings.BASE_DIR, "docs")
|
21
21
|
if not os.path.exists(doc_folder):
|
22
22
|
os.mkdir(doc_folder)
|
23
|
-
forms = FormsReference(
|
23
|
+
forms = FormsReference(
|
24
|
+
visit_schedules=[visit_schedule],
|
25
|
+
admin_site=meta_subject_admin,
|
26
|
+
add_per_form_timestamp=False,
|
27
|
+
)
|
24
28
|
path = os.path.join(doc_folder, "forms_reference.md")
|
25
|
-
forms.to_file(path=path, overwrite=True)
|
29
|
+
forms.to_file(path=path, overwrite=True, pad=0)
|
26
30
|
|
27
31
|
|
28
32
|
class Command(BaseCommand):
|
File without changes
|
meta_edc/navbars.py
CHANGED
@@ -5,6 +5,7 @@ from edc_adverse_event.navbars import ae_navbar_item, tmg_navbar_item
|
|
5
5
|
from edc_data_manager.navbar_item import dm_navbar_item
|
6
6
|
from edc_lab_dashboard.navbars import navbar as lab_navbar
|
7
7
|
from edc_navbar import Navbar, site_navbars
|
8
|
+
from edc_pharmacy.navbars import pharmacy_navbar_item
|
8
9
|
from edc_review_dashboard.navbars import navbar as review_navbar
|
9
10
|
|
10
11
|
from meta_dashboard.navbars import navbar as meta_dashboard_navbar
|
@@ -29,9 +30,9 @@ navbar.register(
|
|
29
30
|
for navbar_item in review_navbar.navbar_items:
|
30
31
|
navbar.register(navbar_item)
|
31
32
|
|
33
|
+
navbar.register(pharmacy_navbar_item)
|
32
34
|
navbar.register(tmg_navbar_item)
|
33
35
|
navbar.register(ae_navbar_item)
|
34
36
|
navbar.register(dm_navbar_item)
|
35
37
|
|
36
|
-
|
37
38
|
site_navbars.register(navbar)
|
meta_edc/settings/debug.py
CHANGED
@@ -8,8 +8,8 @@ print(f"Settings file {__file__}")
|
|
8
8
|
|
9
9
|
# TZ Sites:
|
10
10
|
# SITE_ID = SiteID(default=20) # Amana
|
11
|
-
SITE_ID = SiteID(default=10) # Hindu Mandal
|
12
|
-
|
11
|
+
# SITE_ID = SiteID(default=10) # Hindu Mandal
|
12
|
+
SITE_ID = SiteID(default=40) # Mwananyamala
|
13
13
|
# SITE_ID = SiteID(default=50) # Mbagala
|
14
14
|
# SITE_ID = SiteID(default=60) # Mnazi-Moja
|
15
15
|
# SITE_ID = SiteID(default=30) # Temeke
|
@@ -32,3 +32,11 @@ EDC_MODEL_ADMIN_CSS_THEME = "edc_purple"
|
|
32
32
|
if os.path.exists(BASE_DIR) and not os.path.exists(KEY_PATH): # noqa
|
33
33
|
os.makedirs(KEY_PATH) # noqa
|
34
34
|
AUTO_CREATE_KEYS = True
|
35
|
+
|
36
|
+
# if debugging, run `export DJANGO_DEBUG=True` before running runserver
|
37
|
+
# CELERY_TASK_ALWAYS_EAGER = os.getenv("DJANGO_DEBUG", "False") == "True"
|
38
|
+
# CELERY_TASK_EAGER_PROPAGATES = CELERY_TASK_ALWAYS_EAGER
|
39
|
+
|
40
|
+
EDC_PDF_REPORTS_WATERMARK_WORD = "SAMPLE"
|
41
|
+
EDC_PDF_REPORTS_WATERMARK_FONT = ("Helvetica", 100)
|
42
|
+
EDC_PHARMACY_LABEL_WATERMARK_WORD = "DO NOT USE"
|
meta_edc/settings/defaults.py
CHANGED
@@ -2,6 +2,7 @@ import os
|
|
2
2
|
import sys
|
3
3
|
from importlib.metadata import version
|
4
4
|
from pathlib import Path
|
5
|
+
from urllib.parse import quote
|
5
6
|
|
6
7
|
import django
|
7
8
|
import environ
|
@@ -33,19 +34,17 @@ env = environ.Env(
|
|
33
34
|
EDC_SITES_DOMAIN_SUFFIX="meta4.clinicedc.org",
|
34
35
|
)
|
35
36
|
|
36
|
-
BASE_DIR =
|
37
|
-
ENV_DIR =
|
37
|
+
BASE_DIR = Path(__file__).resolve().parent.parent.parent
|
38
|
+
ENV_DIR = Path(__file__).resolve().parent.parent.parent
|
38
39
|
|
39
40
|
# copy your .env file from .envs/ to BASE_DIR
|
40
41
|
if "test" in sys.argv:
|
41
|
-
env.read_env(
|
42
|
-
print(f"Reading env from {
|
42
|
+
env.read_env(ENV_DIR / ".env-tests")
|
43
|
+
print(f"Reading env from {(BASE_DIR /'.env-tests')}") # noqa
|
43
44
|
else:
|
44
|
-
if not
|
45
|
-
raise FileExistsError(
|
46
|
-
|
47
|
-
)
|
48
|
-
env.read_env(os.path.join(ENV_DIR, ".env"))
|
45
|
+
if not (ENV_DIR / ".env").exists():
|
46
|
+
raise FileExistsError(f"Environment file does not exist. Got `{(ENV_DIR / '.env')}`")
|
47
|
+
env.read_env(ENV_DIR / ".env")
|
49
48
|
|
50
49
|
|
51
50
|
LOGGING_ENABLED = env("DJANGO_LOGGING_ENABLED")
|
@@ -66,7 +65,7 @@ LIVE_SYSTEM = env.str("DJANGO_LIVE_SYSTEM")
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ETC_DIR = env.str("DJANGO_ETC_FOLDER")
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-
TEST_DIR =
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+
TEST_DIR = BASE_DIR / APP_NAME / "tests"
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ALLOWED_HOSTS = env.list("DJANGO_ALLOWED_HOSTS")
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@@ -91,6 +90,10 @@ INSTALLED_APPS = [
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"django.contrib.sites",
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"multisite.apps.AppConfig",
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"defender",
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+
"sequences.apps.SequencesConfig",
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+
# "django_celery_beat",
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# "django_celery_results",
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+
"django_db_views",
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"fontawesomefree",
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"django_crypto_fields.apps.AppConfig",
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"django_revision.apps.AppConfig",
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@@ -98,6 +101,8 @@ INSTALLED_APPS = [
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"logentry_admin",
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"simple_history",
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"storages",
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+
"django_pylabels.apps.AppConfig",
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"edc_pylabels.apps.AppConfig",
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"edc_sites.apps.AppConfig",
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"edc_action_item.apps.AppConfig",
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"edc_appointment.apps.AppConfig",
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@@ -139,6 +144,7 @@ INSTALLED_APPS = [
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"edc_protocol.apps.AppConfig",
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"edc_protocol_incident.apps.AppConfig",
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"edc_prn.apps.AppConfig",
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+
"edc_qareports.apps.AppConfig",
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"edc_qol.apps.AppConfig",
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"edc_randomization.apps.AppConfig",
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"edc_refusal.apps.AppConfig",
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@@ -157,6 +163,7 @@ INSTALLED_APPS = [
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"meta_dashboard.apps.AppConfig",
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"meta_labs.apps.AppConfig",
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"meta_subject.apps.AppConfig",
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+
"meta_reports.apps.AppConfig",
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"meta_visit_schedule.apps.AppConfig",
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"meta_ae.apps.AppConfig",
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"meta_auth.apps.AppConfig",
|
@@ -182,6 +189,7 @@ MIDDLEWARE = [
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"django.contrib.sites.middleware.CurrentSiteMiddleware",
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"django.middleware.csrf.CsrfViewMiddleware",
|
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"django.contrib.auth.middleware.AuthenticationMiddleware",
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+
"django.contrib.auth.middleware.LoginRequiredMiddleware",
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"defender.middleware.FailedLoginMiddleware",
|
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"django.contrib.messages.middleware.MessageMiddleware",
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"django.middleware.clickjacking.XFrameOptionsMiddleware",
|
@@ -228,7 +236,7 @@ if env("DATABASE_SQLITE_ENABLED"):
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DATABASES = {
|
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"default": {
|
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"ENGINE": "django.db.backends.sqlite3",
|
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|
-
"NAME":
|
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+
"NAME": BASE_DIR / "db.sqlite3",
|
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|
}
|
233
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}
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|
@@ -300,6 +308,11 @@ LANGUAGE_CODE = "en-gb"
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300
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|
LANGUAGE_LIST = ["sw", "en-gb", "en", "mas"]
|
301
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|
LANGUAGES = [(code, LANG_INFO[code]["name"]) for code in LANGUAGE_LIST]
|
302
310
|
|
311
|
+
# LOCALE_PATHS = [
|
312
|
+
# base_dir / "locale",
|
313
|
+
# base_dir.parent / "edc-pharmacy" / "edc_pharmacy" / "locale",
|
314
|
+
# ]
|
315
|
+
|
303
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|
TIME_ZONE = env.str("DJANGO_TIME_ZONE")
|
304
317
|
DATE_INPUT_FORMATS = ["%Y-%m-%d", "%d/%m/%Y"]
|
305
318
|
DATETIME_INPUT_FORMATS = [
|
@@ -342,8 +355,8 @@ if not DEBUG:
|
|
342
355
|
SECURE_BROWSER_XSS_FILTER = True
|
343
356
|
|
344
357
|
# edc_lab and label
|
345
|
-
LABEL_TEMPLATE_FOLDER = env.str("DJANGO_LABEL_TEMPLATE_FOLDER") or
|
346
|
-
BASE_DIR
|
358
|
+
LABEL_TEMPLATE_FOLDER = env.str("DJANGO_LABEL_TEMPLATE_FOLDER") or (
|
359
|
+
BASE_DIR / "label_templates" / "2.25x1.25in"
|
347
360
|
)
|
348
361
|
CUPS_SERVERS = env.dict("DJANGO_CUPS_SERVERS")
|
349
362
|
|
@@ -390,6 +403,18 @@ EDC_MNSI_MODEL = "meta_subject.mnsi"
|
|
390
403
|
|
391
404
|
EDC_OFFSTUDY_OFFSTUDY_MODEL = "meta_prn.endofstudy"
|
392
405
|
|
406
|
+
# edc-pharmacy
|
407
|
+
EDC_PDF_REPORTS_WATERMARK_WORD = env.str("EDC_PDF_REPORTS_WATERMARK_WORD")
|
408
|
+
EDC_PDF_REPORTS_WATERMARK_FONT = env.str("EDC_PDF_REPORTS_WATERMARK_FONT")
|
409
|
+
EDC_PDF_REPORTS_WATERMARK_FONTSIZE = env.int("EDC_PDF_REPORTS_WATERMARK_FONTSIZE")
|
410
|
+
EDC_PHARMACY_LABEL_WATERMARK_WORD = env.str("EDC_PHARMACY_LABEL_WATERMARK_WORD")
|
411
|
+
if EDC_PDF_REPORTS_WATERMARK_FONT:
|
412
|
+
EDC_PDF_REPORTS_WATERMARK_FONT = (
|
413
|
+
EDC_PDF_REPORTS_WATERMARK_FONT,
|
414
|
+
EDC_PDF_REPORTS_WATERMARK_FONTSIZE,
|
415
|
+
)
|
416
|
+
else:
|
417
|
+
EDC_PDF_REPORTS_WATERMARK_FONT = ()
|
393
418
|
# edc-protocol-incident
|
394
419
|
EDC_PROTOCOL_VIOLATION_TYPE = PROTOCOL_INCIDENT
|
395
420
|
|
@@ -407,6 +432,9 @@ EDC_RANDOMIZATION_SKIP_VERIFY_CHECKS = True
|
|
407
432
|
# edc-sites
|
408
433
|
EDC_SITES_MODULE_NAME = env.str("EDC_SITES_MODULE_NAME")
|
409
434
|
|
435
|
+
# meta_pharmacy
|
436
|
+
META_PHARMACY_RX_SUBSTITUTION_FILE = env.str("META_PHARMACY_RX_SUBSTITUTION_FILE")
|
437
|
+
|
410
438
|
# django-multisite
|
411
439
|
CACHE_MULTISITE_KEY_PREFIX = "meta4"
|
412
440
|
SILENCED_SYSTEM_CHECKS = ["sites.E101"]
|
@@ -448,7 +476,7 @@ GIT_DIR = BASE_DIR
|
|
448
476
|
KEY_PATH = env.str("DJANGO_KEY_FOLDER")
|
449
477
|
AUTO_CREATE_KEYS = env("DJANGO_AUTO_CREATE_KEYS")
|
450
478
|
|
451
|
-
EXPORT_FOLDER = env.str("DJANGO_EXPORT_FOLDER") or
|
479
|
+
EXPORT_FOLDER = env.str("DJANGO_EXPORT_FOLDER") or Path("~/").expanduser()
|
452
480
|
|
453
481
|
# django_simple_history
|
454
482
|
SIMPLE_HISTORY_ENFORCE_HISTORY_MODEL_PERMISSIONS = True
|
@@ -505,49 +533,36 @@ if env("AWS_ENABLED"):
|
|
505
533
|
AWS_S3_OBJECT_PARAMETERS = {"CacheControl": "max-age=86400"}
|
506
534
|
AWS_LOCATION = env.str("AWS_LOCATION")
|
507
535
|
AWS_IS_GZIPPED = True
|
508
|
-
|
536
|
+
STORAGES = {"staticfiles": {"BACKEND": "storages.backends.s3boto3.S3Boto3Storage"}}
|
509
537
|
STATIC_URL = f"{os.path.join(AWS_S3_CUSTOM_DOMAIN, AWS_LOCATION)}/"
|
510
538
|
STATIC_ROOT = ""
|
511
539
|
elif DEBUG:
|
512
540
|
STATIC_URL = env.str("DJANGO_STATIC_URL")
|
513
|
-
STATIC_ROOT =
|
541
|
+
STATIC_ROOT = Path("~/source/edc_source/meta-edc/static/").expanduser()
|
514
542
|
else:
|
515
543
|
# run collectstatic, check nginx LOCATION
|
516
544
|
STATIC_URL = env.str("DJANGO_STATIC_URL")
|
517
545
|
STATIC_ROOT = env.str("DJANGO_STATIC_ROOT")
|
518
546
|
|
519
547
|
# CELERY
|
520
|
-
# see docs on setting up the broker
|
521
548
|
CELERY_ENABLED = env("CELERY_ENABLED")
|
522
549
|
if CELERY_ENABLED:
|
523
|
-
|
524
|
-
|
525
|
-
CELERY_BROKER_HOST = env.str("CELERY_BROKER_HOST")
|
526
|
-
CELERY_BROKER_PORT = env.str("CELERY_BROKER_PORT")
|
527
|
-
if DEBUG:
|
528
|
-
CELERY_BROKER_VHOST = f"{APP_NAME}_debug"
|
529
|
-
elif LIVE_SYSTEM:
|
530
|
-
CELERY_BROKER_VHOST = f"{APP_NAME}_production"
|
531
|
-
else:
|
532
|
-
CELERY_BROKER_VHOST = f"{APP_NAME}_uat"
|
550
|
+
CELERY_CACHE_BACKEND = "default"
|
551
|
+
if env.str("DJANGO_REDIS_PASSWORD"):
|
533
552
|
CELERY_BROKER_URL = (
|
534
|
-
f"
|
535
|
-
f"{CELERY_BROKER_HOST}:{CELERY_BROKER_PORT}/{CELERY_BROKER_VHOST}"
|
553
|
+
f"redis://:{quote(env.str('DJANGO_REDIS_PASSWORD'), safe='')}@127.0.0.1:6379/0"
|
536
554
|
)
|
537
|
-
|
538
|
-
|
539
|
-
|
540
|
-
|
541
|
-
|
542
|
-
|
543
|
-
|
544
|
-
|
545
|
-
|
546
|
-
|
547
|
-
|
548
|
-
# 'edc_data_manager.tasks.*': {'queue': 'normal'},
|
549
|
-
# }
|
550
|
-
|
555
|
+
CELERY_RESULT_BACKEND = (
|
556
|
+
f"redis://:{quote(env.str('DJANGO_REDIS_PASSWORD'), safe='')}@127.0.0.1:6379/0"
|
557
|
+
)
|
558
|
+
else:
|
559
|
+
CELERY_BROKER_URL = "redis://127.0.0.1:6379/0"
|
560
|
+
CELERY_RESULT_BACKEND = "redis://localhost:6379/0"
|
561
|
+
# CELERY_BEAT_SCHEDULER = "django_celery_beat.schedulers.DatabaseScheduler"
|
562
|
+
CELERY_ACCEPT_CONTENT = ["json"]
|
563
|
+
CELERY_TASK_SERIALIZER = "json"
|
564
|
+
CELERY_RESULT_SERIALIZER = "json"
|
565
|
+
CELERY_TIMEZONE = "UTC"
|
551
566
|
|
552
567
|
if "test" in sys.argv:
|
553
568
|
|
@@ -56,8 +56,11 @@ a { cursor: pointer; }
|
|
56
56
|
{% if perms.edc_data_manager.nav_data_manager_section %}
|
57
57
|
<a href="{% url 'edc_data_manager:home_url' %}" class="list-group-item"><i class="fas fa-database fa-lg fa-fw"></i> Data Management</a>
|
58
58
|
{% endif %}
|
59
|
-
{% if perms.
|
60
|
-
<a href="{% url
|
59
|
+
{% if perms.meta_reports %}
|
60
|
+
<a href="{% url 'meta_reports:home_url' %}" class="list-group-item"><i class="fa-solid fa-stroopwafel fa-lg fa-fw"></i></i> QA Reports</a>
|
61
|
+
{% endif %}
|
62
|
+
{% if perms.edc_pharmacy.nav_pharmacy_section %}
|
63
|
+
<a href="{% url 'edc_pharmacy:home_url' %}" class="list-group-item"><i class="fas fa-prescription fa-lg fa-fw"></i> Pharmacy</a>
|
61
64
|
{% endif %}
|
62
65
|
{% if perms.edc_export %}
|
63
66
|
<a href="{% url 'edc_export:home_url' %}" class="list-group-item"><i class="fas fa-file-export fa-lg fa-fw"></i> Export data</a>
|
@@ -85,8 +85,10 @@ class AdminSiteTest(MetaTestCaseMixin, WebTest):
|
|
85
85
|
import_module("edc_adverse_event.auths")
|
86
86
|
import_module("edc_appointment.auths")
|
87
87
|
import_module("edc_consent.auths")
|
88
|
+
import_module("edc_pylabels.auths")
|
88
89
|
import_module("edc_dashboard.auths")
|
89
90
|
import_module("edc_data_manager.auths")
|
91
|
+
import_module("edc_qareports.auths")
|
90
92
|
import_module("edc_export.auths")
|
91
93
|
import_module("edc_lab.auths")
|
92
94
|
import_module("edc_lab_dashboard.auths")
|
meta_edc/urls.py
CHANGED
@@ -22,6 +22,7 @@ urlpatterns = [
|
|
22
22
|
path("accounts/", include("edc_auth.urls_for_accounts", namespace="auth")),
|
23
23
|
path("administration/", AdministrationView.as_view(), name="administration_url"),
|
24
24
|
path("subject/", include("meta_dashboard.urls")),
|
25
|
+
*paths_for_urlpatterns("edc_pylabels"),
|
25
26
|
*paths_for_urlpatterns("edc_auth"),
|
26
27
|
*paths_for_urlpatterns("edc_action_item"),
|
27
28
|
*paths_for_urlpatterns("edc_adverse_event"),
|
@@ -56,15 +57,17 @@ urlpatterns = [
|
|
56
57
|
*paths_for_urlpatterns("edc_sites"),
|
57
58
|
*paths_for_urlpatterns("edc_subject_dashboard"),
|
58
59
|
*paths_for_urlpatterns("edc_unblinding"),
|
60
|
+
*paths_for_urlpatterns("edc_qareports"),
|
59
61
|
*paths_for_urlpatterns("edc_visit_schedule"),
|
60
|
-
# *paths_for_urlpatterns("canned_views"),
|
61
62
|
*paths_for_urlpatterns("meta_ae"),
|
62
63
|
*paths_for_urlpatterns("meta_consent"),
|
63
64
|
*paths_for_urlpatterns("meta_export"),
|
64
65
|
*paths_for_urlpatterns("meta_lists"),
|
66
|
+
*paths_for_urlpatterns("meta_pharmacy"),
|
65
67
|
*paths_for_urlpatterns("meta_prn"),
|
66
68
|
*paths_for_urlpatterns("meta_screening"),
|
67
69
|
*paths_for_urlpatterns("meta_subject"),
|
70
|
+
*paths_for_urlpatterns("meta_reports"),
|
68
71
|
]
|
69
72
|
|
70
73
|
if settings.DEFENDER_ENABLED:
|
meta_edc/wsgi.py
CHANGED
meta_edc/wsgi_live.py
CHANGED
meta_edc/wsgi_uat.py
CHANGED
File without changes
|