meta-edc 0.3.15__py3-none-any.whl → 0.3.50__py3-none-any.whl

meta_reports/migrations/0046_auto_20240829_0250.py

@@ -0,0 +1,54 @@
+# Generated by Django 5.0.8 on 2024-08-28 23:50
+
+import django_db_views.migration_functions
+import django_db_views.operations
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0045_auto_20240829_0248"),
+    ]
+
+    operations = [
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'onstudy_missing_values_view' as `report_model` from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.mysql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.postgresql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value or VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL OR crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value or CD4 date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'onstudy_missing_values_view' as report_model from (SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No HIV Diagnosis date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.hiv_diagnosis_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No VL date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.viral_load_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No CD4 value' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.cd4 IS NULL OR crf.cd4_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'No current ARV start date but previous ARV is YES' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE crf.has_previous_arv_regimen = 'Yes' AND crf.current_arv_regimen_start_date IS NULL GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.patienthistory' AS label_lower, 'Other current ARV regimen missing' AS label, COUNT(*) AS records FROM meta_subject_patienthistory AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id LEFT JOIN meta_lists_arvregimens AS arvregimen ON crf.current_arv_regimen_id = arvregimen.id WHERE crf.other_current_arv_regimen IS NULL AND arvregimen.name = 'OTHER' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified UNION SELECT v.subject_identifier, crf.id AS original_id, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified, 'meta_subject.glucose' AS label_lower, 'FBG/OGTT: missing OGTT' AS label, COUNT(*) AS records FROM meta_subject_glucose AS crf LEFT JOIN meta_subject_subjectvisit AS v ON v.id = crf.subject_visit_id WHERE (NOT crf.fbg_value IS NULL AND crf.ogtt_value IS NULL) AND ogtt_performed = 'Yes' GROUP BY v.subject_identifier, crf.subject_visit_id, crf.report_datetime, crf.site_id, v.visit_code, v.visit_code_sequence, v.schedule_name, crf.modified) as A ORDER BY subject_identifier, site_id",
+                "onstudy_missing_values_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            atomic=False,
+        ),
+    ]

meta_reports/migrations/0047_impsubstitutions.py

@@ -0,0 +1,56 @@
+# Generated by Django 5.1 on 2024-09-09 20:37
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0046_auto_20240829_0250"),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="ImpSubstitutions",
+            fields=[
+                (
+                    "id",
+                    models.BigAutoField(
+                        auto_created=True, primary_key=True, serialize=False, verbose_name="ID"
+                    ),
+                ),
+                ("report_model", models.CharField(max_length=50)),
+                ("subject_identifier", models.CharField(max_length=25)),
+                ("created", models.DateTimeField()),
+                ("original_id", models.UUIDField(null=True)),
+                ("sid", models.IntegerField(null=True, verbose_name="Original SID")),
+                (
+                    "dispensed_sid",
+                    models.IntegerField(null=True, verbose_name="Dispensed SID"),
+                ),
+                (
+                    "arm_match",
+                    models.CharField(
+                        choices=[
+                            ("Yes", "Yes"),
+                            ("No", "No"),
+                            ("not_evaluated", "Not evaluated"),
+                        ],
+                        default="not_evaluated",
+                        max_length=15,
+                    ),
+                ),
+                ("allocated_datetime", models.DateTimeField(null=True)),
+                ("user_created", models.CharField(max_length=25)),
+                ("user_modified", models.CharField(max_length=25)),
+                ("modified", models.DateTimeField(null=True)),
+            ],
+            options={
+                "verbose_name": "IMP Substitutions",
+                "verbose_name_plural": "IMP Substitutions",
+                "db_table": "imp_subjectitutions_view",
+                "managed": False,
+                "default_permissions": ("view", "export", "viewallsites"),
+            },
+        ),
+    ]

meta_reports/migrations/0048_auto_20240909_2338.py

@@ -0,0 +1,48 @@
+# Generated by Django 5.1 on 2024-09-09 20:38
+
+import django_db_views.migration_functions
+import django_db_views.operations
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0047_impsubstitutions"),
+    ]
+
+    operations = [
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'meta_reports.imp_subjectitutions_view' as `report_model` from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.mysql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "", "imp_subjectitutions_view", engine="django.db.backends.mysql"
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier NULLS FIRST) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.postgresql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "", "imp_subjectitutions_view", engine="django.db.backends.postgresql"
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "", "imp_subjectitutions_view", engine="django.db.backends.sqlite3"
+            ),
+            atomic=False,
+        ),
+    ]

meta_reports/migrations/0049_auto_20240911_0327.py

@@ -0,0 +1,54 @@
+# Generated by Django 5.1 on 2024-09-11 00:27
+
+import django_db_views.migration_functions
+import django_db_views.operations
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0048_auto_20240909_2338"),
+    ]
+
+    operations = [
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'meta_reports.imp_subjectitutions_view' as `report_model` from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, s.report_datetime, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.mysql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, now() as `created`, 'meta_reports.imp_subjectitutions_view' as `report_model` from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.mysql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, s.report_datetime, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier NULLS FIRST) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.postgresql",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, get_random_uuid() as id, now() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier NULLS FIRST) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.postgresql",
+            ),
+            atomic=False,
+        ),
+        django_db_views.operations.ViewRunPython(
+            code=django_db_views.migration_functions.ForwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, s.report_datetime, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            reverse_code=django_db_views.migration_functions.BackwardViewMigration(
+                "select *, uuid() as id, datetime() as created, 'meta_reports.imp_subjectitutions_view' as report_model from (SELECT s.subject_identifier, s.sid, s.dispensed_sid, arm_match, r.allocated_datetime, s.site_id, s.user_created, s.user_modified, s.modified, s.id AS original_id FROM meta_pharmacy_substitutions AS s LEFT JOIN meta_rando_randomizationlist AS r ON r.subject_identifier = s.subject_identifier ORDER BY s.subject_identifier) as A ORDER BY subject_identifier, site_id",
+                "imp_subjectitutions_view",
+                engine="django.db.backends.sqlite3",
+            ),
+            atomic=False,
+        ),
+    ]

meta_reports/migrations/0050_alter_endpoints_created.py

@@ -0,0 +1,19 @@
+# Generated by Django 5.1 on 2024-10-07 22:02
+
+import edc_utils.date
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0049_auto_20240911_0327"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="endpoints",
+            name="created",
+            field=models.DateTimeField(default=edc_utils.date.get_utcnow),
+        ),
+    ]

meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py

@@ -0,0 +1,40 @@
+# Generated by Django 5.1 on 2024-10-09 16:04
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0050_alter_endpoints_created"),
+    ]
+
+    operations = [
+        migrations.RemoveField(
+            model_name="endpoints",
+            name="baseline_datetime",
+        ),
+        migrations.RemoveField(
+            model_name="endpoints",
+            name="fbg_datetime",
+        ),
+        migrations.RemoveField(
+            model_name="endpoints",
+            name="offstudy_datetime",
+        ),
+        migrations.AddField(
+            model_name="endpoints",
+            name="baseline_date",
+            field=models.DateField(null=True),
+        ),
+        migrations.AddField(
+            model_name="endpoints",
+            name="fbg_date",
+            field=models.DateField(null=True),
+        ),
+        migrations.AddField(
+            model_name="endpoints",
+            name="offstudy_date",
+            field=models.DateField(null=True),
+        ),
+    ]

meta_reports/migrations/0052_lastimpvisit.py

@@ -0,0 +1,57 @@
+# Generated by Django 5.1.2 on 2024-10-16 00:53
+
+import django.db.models.deletion
+import edc_utils.date
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0051_remove_endpoints_baseline_datetime_and_more"),
+        ("sites", "0002_alter_domain_unique"),
+    ]
+
+    operations = [
+        migrations.CreateModel(
+            name="LastImpVisit",
+            fields=[
+                (
+                    "id",
+                    models.BigAutoField(
+                        auto_created=True, primary_key=True, serialize=False, verbose_name="ID"
+                    ),
+                ),
+                ("report_model", models.CharField(max_length=50)),
+                ("subject_identifier", models.CharField(max_length=25)),
+                ("created", models.DateTimeField(default=edc_utils.date.get_utcnow)),
+                ("reference_date", models.DateField(null=True)),
+                ("imp_visit_code", models.FloatField(null=True)),
+                ("imp_visit_date", models.DateField(null=True)),
+                ("next_visit_code", models.FloatField(null=True)),
+                ("next_appt_date", models.DateField(null=True)),
+                ("visit_code", models.CharField(max_length=15, null=True)),
+                ("visit_code_sequence", models.IntegerField(null=True)),
+                ("days_since", models.IntegerField(null=True)),
+                ("days_until", models.IntegerField(null=True)),
+                (
+                    "site",
+                    models.ForeignKey(
+                        on_delete=django.db.models.deletion.DO_NOTHING, to="sites.site"
+                    ),
+                ),
+            ],
+            options={
+                "verbose_name": "Last IMP Visit",
+                "verbose_name_plural": "Last IMP Visits",
+                "abstract": False,
+                "default_permissions": ("view", "export", "viewallsites"),
+                "indexes": [
+                    models.Index(
+                        fields=["subject_identifier", "site"],
+                        name="meta_report_subject_4a9e15_idx",
+                    )
+                ],
+            },
+        ),
+    ]

meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py

@@ -0,0 +1,31 @@
+# Generated by Django 5.1.2 on 2024-10-16 01:39
+
+from django.db import migrations
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_reports", "0052_lastimpvisit"),
+        ("sites", "0002_alter_domain_unique"),
+    ]
+
+    operations = [
+        migrations.RenameModel(
+            old_name="LastImpVisit",
+            new_name="LastImpRefill",
+        ),
+        migrations.AlterModelOptions(
+            name="lastimprefill",
+            options={
+                "default_permissions": ("view", "export", "viewallsites"),
+                "verbose_name": "Last IMP Refill",
+                "verbose_name_plural": "Last IMP Refills",
+            },
+        ),
+        migrations.RenameIndex(
+            model_name="lastimprefill",
+            new_name="meta_report_subject_bc8268_idx",
+            old_name="meta_report_subject_4a9e15_idx",
+        ),
+    ]

meta_reports/models/__init__.py

@@ -0,0 +1,16 @@
+from .dbviews import (
+    NOTE_STATUSES,
+    GlucoseSummary,
+    ImpSubstitutions,
+    MissingOgttNote,
+    MissingScreeningOgtt,
+    OnStudyMissingLabValues,
+    OnStudyMissingValues,
+    PatientHistoryMissingBaselineCd4,
+    UnattendedThreeInRow,
+    UnattendedThreeInRow2,
+    UnattendedTwoInRow,
+)
+from .endpoints import Endpoints
+from .endpoints_proxy import EndpointsProxy
+from .last_imp_refill import LastImpRefill

meta_reports/models/dbviews/README

@@ -0,0 +1,14 @@
+The models in this folder represent VIEWS in the DB. Since the VIEWS
+ are created separately, the model classes are "unmanaged". Unmanaged
+ models do not trigger migrations that change the schema. However,
+ a change to any of these model classes will trigger a migration, but
+ the migration does to change the schema.
+
+ Each model class has a corresponding SQL file. A migration has been
+ created to run the ``CREATE VIEW`` commands using the
+ ``migrations.RunSQL`` method.
+
+ If you change the ``CREATE VIEW`` command, you have to generate a
+ new empty migration which calls ``migrations.RunSQL`` to re-run the
+ modified ``CREATE VIEW`` SQL command.
+ (remember to ``DROP VIEW`` first.)

meta_reports/models/dbviews/__init__.py

@@ -0,0 +1,9 @@
+from .glucose_summary import GlucoseSummary
+from .imp_substitutions import ImpSubstitutions
+from .missing_screening_ogtt import NOTE_STATUSES, MissingOgttNote, MissingScreeningOgtt
+from .on_study_missing_lab_values import OnStudyMissingLabValues
+from .on_study_missing_values import OnStudyMissingValues
+from .patient_history_missing_baseline_cd4 import PatientHistoryMissingBaselineCd4
+from .unattended_three_in_row import UnattendedThreeInRow
+from .unattended_three_in_row2 import UnattendedThreeInRow2
+from .unattended_two_in_row import UnattendedTwoInRow

meta_reports/models/dbviews/glucose_summary/__init__.py

@@ -0,0 +1,2 @@
+from .unmanaged_model import GlucoseSummary
+from .view_definition import get_view_definition

meta_reports/models/dbviews/glucose_summary/unmanaged_model.py

@@ -0,0 +1,35 @@
+from django.db import models
+from django_db_views.db_view import DBView
+from edc_qareports.model_mixins import QaReportModelMixin, qa_reports_permissions
+
+from .view_definition import get_view_definition
+
+
+class GlucoseSummary(QaReportModelMixin, DBView):
+
+    fbg_value = models.DecimalField(max_digits=8, decimal_places=2, null=True)
+
+    fbg_datetime = models.DateTimeField(null=True)
+
+    ogtt_value = models.DecimalField(max_digits=8, decimal_places=2, null=True)
+
+    ogtt_datetime = models.DateTimeField(null=True)
+
+    fasted = models.CharField(max_length=15, null=True)
+
+    visit_code = models.CharField(max_length=25)
+
+    visit_code_sequence = models.IntegerField()
+
+    appointment_id = models.UUIDField(null=True)
+
+    offstudy_datetime = models.DateTimeField(null=True)
+
+    view_definition = get_view_definition()
+
+    class Meta:
+        managed = False
+        db_table = "glucose_summary_view"
+        verbose_name = "Glucose Summary"
+        verbose_name_plural = "Glucose Summary"
+        default_permissions = qa_reports_permissions

meta_reports/models/dbviews/glucose_summary/view_definition.py

@@ -0,0 +1,28 @@
+from edc_qareports.sql_generator import SqlViewGenerator
+
+
+def get_view_definition() -> dict:
+    subquery = """
+    select v.subject_identifier, fbg_value, fbg_datetime, null as `ogtt_value`, null as `ogtt_datetime`,
+    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as `fasted`,
+    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
+    from meta_subject_glucosefbg as fbg
+    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
+    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
+    UNION
+    select v.subject_identifier, fbg_value, fbg_datetime, ogtt_value, ogtt_datetime,
+    case when fasting="fasting" then "Yes" when fasting="non_fasting" then "No" else fasting end as `fasted`,
+    fbg.site_id, v.visit_code, v.visit_code_sequence, v.appointment_id, eos.offstudy_datetime
+    from meta_subject_glucose as fbg
+    left join meta_subject_subjectvisit as v on v.id=fbg.subject_visit_id
+    left join meta_prn_endofstudy as eos on v.subject_identifier=eos.subject_identifier
+    """  # noqa
+    sql_view = SqlViewGenerator(
+        report_model="meta_reports.glucose_summary_view",
+        ordering=["subject_identifier", "site_id"],
+    )
+    return {
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
+    }

meta_reports/models/dbviews/imp_substitutions/__init__.py

@@ -0,0 +1 @@
+from .unmanaged_model import ImpSubstitutions

meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py

@@ -0,0 +1,41 @@
+from django.db import models
+from django_db_views.db_view import DBView
+from edc_constants.choices import YES_NO_NOT_EVALUATED
+from edc_constants.constants import NOT_EVALUATED
+from edc_qareports.model_mixins import QaReportModelMixin, qa_reports_permissions
+
+from .view_definition import get_view_definition
+
+
+class ImpSubstitutions(QaReportModelMixin, DBView):
+
+    original_id = models.UUIDField(null=True)
+
+    sid = models.IntegerField(verbose_name="Original SID", null=True)
+
+    dispensed_sid = models.IntegerField(verbose_name="Dispensed SID", null=True)
+
+    arm_match = models.CharField(
+        max_length=15,
+        choices=YES_NO_NOT_EVALUATED,
+        default=NOT_EVALUATED,
+    )
+
+    report_datetime = models.DateTimeField(null=True)
+
+    allocated_datetime = models.DateTimeField(null=True)
+
+    user_created = models.CharField(max_length=25)
+
+    user_modified = models.CharField(max_length=25)
+
+    modified = models.DateTimeField(null=True)
+
+    view_definition = get_view_definition()
+
+    class Meta:
+        managed = False
+        db_table = "imp_subjectitutions_view"
+        verbose_name = "IMP Substitutions"
+        verbose_name_plural = "IMP Substitutions"
+        default_permissions = qa_reports_permissions

meta_reports/models/dbviews/imp_substitutions/view_definition.py

@@ -0,0 +1,21 @@
+from edc_qareports.sql_generator import SqlViewGenerator
+
+
+def get_view_definition() -> dict:
+    subquery = """
+        select s.subject_identifier, s.sid, s.dispensed_sid, arm_match,
+        s.report_datetime, r.allocated_datetime,
+        s.site_id, s.user_created, s.user_modified, s.modified, s.id as original_id
+        from meta_pharmacy_substitutions as s left join meta_rando_randomizationlist as r
+        on r.subject_identifier=s.subject_identifier
+        order by s.subject_identifier
+        """  # noqa
+    sql_view = SqlViewGenerator(
+        report_model="meta_reports.imp_subjectitutions_view",
+        ordering=["subject_identifier", "site_id"],
+    )
+    return {
+        "django.db.backends.mysql": sql_view.as_mysql(subquery),
+        "django.db.backends.postgresql": sql_view.as_postgres(subquery),
+        "django.db.backends.sqlite3": sql_view.as_sqlite(subquery),
+    }

meta_reports/models/dbviews/missing_screening_ogtt/__init__.py

@@ -0,0 +1,2 @@
+from .note_model import NOTE_STATUSES, MissingOgttNote
+from .unmanaged_model import MissingScreeningOgtt