meta-edc 0.3.15__py3-none-any.whl → 0.3.50__py3-none-any.whl

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Files changed (333) hide show
  1. meta_ae/action_items.py +2 -2
  2. meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
  3. meta_ae/tests/holidays.csv +1 -1
  4. meta_analytics/README.rst +17 -0
  5. meta_analytics/dataframes/__init__.py +19 -0
  6. meta_analytics/dataframes/constants.py +33 -0
  7. meta_analytics/dataframes/enrolled/__init__.py +1 -0
  8. meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
  9. meta_analytics/dataframes/get_eos_df.py +26 -0
  10. meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
  11. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  12. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
  13. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
  14. meta_analytics/dataframes/screening/__init__.py +2 -0
  15. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
  16. meta_analytics/dataframes/screening/get_screening_df.py +163 -0
  17. meta_analytics/dataframes/utils.py +65 -0
  18. meta_analytics/get_tables.py +81 -0
  19. meta_analytics/tables/__init__.py +2 -0
  20. meta_analytics/tables/eligible.py +106 -0
  21. meta_analytics/tables/enrolled/__init__.py +0 -0
  22. meta_analytics/tables/enrolled/glucose.py +28 -0
  23. meta_analytics/tables/has_dm.py +61 -0
  24. meta_analytics/tests/__init__.py +0 -0
  25. meta_analytics/tests/test_endpoints_by_date.py +94 -0
  26. meta_auth/auth_objects.py +22 -0
  27. meta_auth/auths.py +18 -3
  28. meta_consent/action_items.py +18 -1
  29. meta_consent/admin/__init__.py +1 -0
  30. meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
  31. meta_consent/baker_recipes.py +1 -0
  32. meta_consent/consents.py +20 -1
  33. meta_consent/constants.py +1 -0
  34. meta_consent/forms/__init__.py +1 -0
  35. meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
  36. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  37. meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
  38. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
  39. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  40. meta_consent/models/__init__.py +1 -0
  41. meta_consent/models/signals.py +18 -0
  42. meta_consent/models/subject_consent_v1_ext.py +29 -0
  43. meta_consent/tests/holidays.csv +1 -1
  44. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  45. meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
  46. meta_dashboard/navbars.py +3 -1
  47. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
  48. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
  49. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
  50. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
  51. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  52. meta_dashboard/tests/holidays.csv +1 -1
  53. meta_dashboard/tests/urls.py +0 -1
  54. meta_dashboard/view_utils/__init__.py +6 -0
  55. meta_dashboard/view_utils/subject_screening_button.py +2 -2
  56. meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
  57. meta_edc/__init__.py +7 -0
  58. meta_edc/celery.py +4 -13
  59. meta_edc/celery_live.py +18 -0
  60. meta_edc/celery_uat.py +24 -0
  61. meta_edc/management/commands/update_forms_reference.py +6 -2
  62. meta_edc/migrations/__init__.py +0 -0
  63. meta_edc/navbars.py +2 -1
  64. meta_edc/settings/debug.py +10 -2
  65. meta_edc/settings/defaults.py +58 -43
  66. meta_edc/templates/meta_edc/bootstrap3/home.html +5 -2
  67. meta_edc/tests/tests/test_endpoints.py +2 -0
  68. meta_edc/urls.py +4 -1
  69. meta_edc/wsgi.py +1 -1
  70. meta_edc/wsgi_live.py +1 -1
  71. meta_edc/wsgi_uat.py +1 -1
  72. meta_edc-0.3.50.dist-info/AUTHORS +0 -0
  73. meta_edc-0.3.50.dist-info/METADATA +766 -0
  74. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/RECORD +316 -127
  75. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
  76. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
  77. meta_pharmacy/admin/__init__.py +2 -0
  78. meta_pharmacy/admin/rx_admin.py +75 -0
  79. meta_pharmacy/admin/substitutions_admin.py +67 -0
  80. meta_pharmacy/admin_site.py +9 -0
  81. meta_pharmacy/apps.py +5 -0
  82. meta_pharmacy/constants.py +10 -0
  83. meta_pharmacy/forms/__init__.py +2 -0
  84. meta_pharmacy/forms/rx_form.py +16 -0
  85. meta_pharmacy/forms/substitutions_form.py +54 -0
  86. meta_pharmacy/label_configs.py +30 -0
  87. meta_pharmacy/labels/__init__.py +5 -0
  88. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
  89. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  90. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  91. meta_pharmacy/labels/label_data.py +14 -0
  92. meta_pharmacy/labels/print_sheets.py +97 -0
  93. meta_pharmacy/list_data.py +8 -0
  94. meta_pharmacy/management/__init__.py +0 -0
  95. meta_pharmacy/management/commands/__init__.py +0 -0
  96. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
  97. meta_pharmacy/migrations/0002_initial.py +695 -0
  98. meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
  99. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  100. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  101. meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
  102. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  103. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
  104. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  105. meta_pharmacy/models/__init__.py +3 -0
  106. meta_pharmacy/models/label_data.py +38 -0
  107. meta_pharmacy/models/rx.py +18 -0
  108. meta_pharmacy/models/rx_label.py +39 -0
  109. meta_pharmacy/models/substitutions.py +88 -0
  110. meta_pharmacy/urls.py +8 -0
  111. meta_pharmacy/utils/__init__.py +1 -0
  112. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  113. meta_prn/action_items.py +9 -1
  114. meta_prn/admin/pregnancy_notification_admin.py +6 -2
  115. meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
  116. meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
  117. meta_prn/tests/tests/test_dm_referral.py +3 -6
  118. meta_reports/__init__.py +1 -0
  119. meta_reports/admin/__init__.py +15 -0
  120. meta_reports/admin/dbviews/__init__.py +14 -0
  121. meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
  122. meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
  123. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
  124. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
  125. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
  126. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
  127. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
  128. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
  129. meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
  130. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
  131. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
  132. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
  133. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
  134. meta_reports/admin/endpoints_admin.py +14 -0
  135. meta_reports/admin/endpoints_all_admin.py +13 -0
  136. meta_reports/admin/last_imp_refill_admin.py +181 -0
  137. meta_reports/admin/list_filters.py +30 -0
  138. meta_reports/admin/modeladmin_mixins.py +112 -0
  139. meta_reports/admin_site.py +5 -0
  140. meta_reports/apps.py +1 -16
  141. meta_reports/forms/__init__.py +1 -0
  142. meta_reports/forms/missing_ogtt_note_form.py +33 -0
  143. meta_reports/management/__init__.py +0 -0
  144. meta_reports/management/commands/__init__.py +0 -0
  145. meta_reports/management/commands/generate_endpoints.py +13 -0
  146. meta_reports/migrations/0001_initial.py +87 -0
  147. meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
  148. meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
  149. meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
  150. meta_reports/migrations/0005_endpoints.py +47 -0
  151. meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
  152. meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
  153. meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
  154. meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
  155. meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
  156. meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
  157. meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
  158. meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
  159. meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
  160. meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
  161. meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
  162. meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
  163. meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
  164. meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
  165. meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
  166. meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
  167. meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
  168. meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
  169. meta_reports/migrations/0024_glucosesummary.py +38 -0
  170. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  171. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  172. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  173. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  174. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  175. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  176. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  177. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  178. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  179. meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
  180. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
  181. meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
  182. meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
  183. meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
  184. meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
  185. meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
  186. meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
  187. meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
  188. meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
  189. meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
  190. meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
  191. meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
  192. meta_reports/migrations/0047_impsubstitutions.py +56 -0
  193. meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
  194. meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
  195. meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
  196. meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
  197. meta_reports/migrations/0052_lastimpvisit.py +57 -0
  198. meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
  199. meta_reports/models/__init__.py +16 -0
  200. meta_reports/models/dbviews/README +14 -0
  201. meta_reports/models/dbviews/__init__.py +9 -0
  202. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  203. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  204. meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
  205. meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
  206. meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
  207. meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
  208. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  209. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
  210. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
  211. meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
  212. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
  213. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
  214. meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
  215. meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
  216. meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
  217. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
  218. meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
  219. meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
  220. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
  221. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
  222. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
  223. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
  224. meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
  225. meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
  226. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
  227. meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
  228. meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
  229. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
  230. meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
  231. meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
  232. meta_reports/models/endpoints.py +31 -0
  233. meta_reports/models/endpoints_proxy.py +11 -0
  234. meta_reports/models/last_imp_refill.py +34 -0
  235. meta_reports/tasks.py +12 -0
  236. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  237. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  238. meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
  239. meta_reports/tests/test_sql_gen.py +5 -0
  240. meta_reports/urls.py +8 -0
  241. meta_reports/utils.py +0 -0
  242. meta_screening/admin/subject_screening_admin.py +1 -0
  243. meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
  244. meta_screening/tests/holidays.csv +1 -1
  245. meta_screening/tests/meta_test_case_mixin.py +15 -0
  246. meta_sites/tests/test_sites.py +1 -1
  247. meta_subject/action_items.py +2 -2
  248. meta_subject/admin/__init__.py +2 -1
  249. meta_subject/admin/birth_outcome_admin.py +2 -0
  250. meta_subject/admin/blood_results/__init__.py +1 -1
  251. meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
  252. meta_subject/admin/diabetes/__init__.py +1 -1
  253. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  254. meta_subject/admin/glucose_fbg_admin.py +4 -0
  255. meta_subject/admin/other_arv_regimens_admin.py +2 -0
  256. meta_subject/admin/study_medication_admin.py +10 -0
  257. meta_subject/form_validators/__init__.py +1 -1
  258. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  259. meta_subject/forms/__init__.py +2 -2
  260. meta_subject/forms/blood_results/__init__.py +1 -1
  261. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
  262. meta_subject/forms/diabetes/__init__.py +1 -2
  263. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  264. meta_subject/forms/study_medication_form.py +35 -0
  265. meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
  266. meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
  267. meta_subject/metadata_rules/metadata_rules.py +7 -0
  268. meta_subject/metadata_rules/predicates.py +45 -8
  269. meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
  270. meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
  271. meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
  272. meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
  273. meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
  274. meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
  275. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  276. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  277. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  278. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  279. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  280. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  281. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  282. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  283. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  284. meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
  285. meta_subject/models/__init__.py +3 -2
  286. meta_subject/models/birth_outcomes.py +6 -1
  287. meta_subject/models/blood_results/__init__.py +1 -1
  288. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +3 -3
  289. meta_subject/models/diabetes/__init__.py +1 -2
  290. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  291. meta_subject/models/glucose.py +4 -1
  292. meta_subject/models/physical_exam.py +1 -0
  293. meta_subject/models/signals.py +19 -0
  294. meta_subject/models/todo.txt +1 -1
  295. meta_subject/static/meta_subject/slider.css +1 -1
  296. meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
  297. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  298. meta_subject/tests/holidays.csv +1 -1
  299. meta_subject/tests/tests/test_medication_adherence.py +5 -1
  300. meta_subject/tests/tests/test_metadata_rules.py +2 -2
  301. meta_subject/tests/tests/test_mnsi.py +212 -121
  302. meta_subject/tests/tests/test_sf12.py +0 -12
  303. meta_visit_schedule/constants.py +4 -0
  304. meta_visit_schedule/tests/tests/test_schedule.py +4 -0
  305. meta_visit_schedule/visit_schedules/phase_three/crfs.py +75 -13
  306. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
  307. meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
  308. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -1
  309. tests/etc/randomization_list.csv +1 -1
  310. {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
  311. tests/holidays.csv +1 -1
  312. {meta_edc/tests → tests}/test_settings.py +16 -6
  313. meta_edc/tests/etc/user-aes-local.key +0 -1
  314. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  315. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  316. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  317. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  318. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  319. meta_edc/tests/etc/user-salt-local.key +0 -0
  320. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  321. meta_edc-0.3.15.dist-info/METADATA +0 -88
  322. meta_reports/tests/holidays.csv +0 -15
  323. meta_subject/admin/diabetes/dm_diagnosis_admin.py +0 -89
  324. meta_subject/form_validators/dm_diagnosis_form_validator.py +0 -38
  325. meta_subject/form_validators/dm_dx_result_form_validator.py +0 -7
  326. meta_subject/forms/diabetes/dm_diagnosis_form.py +0 -13
  327. meta_subject/forms/diabetes/dm_dx_result_form.py +0 -11
  328. meta_subject/models/diabetes/dm_diagnosis.py +0 -50
  329. meta_subject/models/diabetes/dm_dx_result.py +0 -70
  330. /meta_edc-0.3.15.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
  331. /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
  332. /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
  333. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -1,5 +1,5 @@
1
1
  # Generated by Django 3.2.11 on 2022-04-14 21:43
2
-
2
+ from django.core.exceptions import ObjectDoesNotExist
3
3
  from django.db import migrations
4
4
  from django.db.migrations import RunPython
5
5
  from edc_consent.utils import get_consent_model_name
@@ -10,28 +10,34 @@ from meta_pharmacy.constants import METFORMIN
10
10
 
11
11
 
12
12
  def func(apps, schema_editor):
13
- medication = apps.get_model("edc_pharmacy.medication")._default_manager.get(name=METFORMIN)
14
- site_model_cls = apps.get_model("sites.site")
15
- subject_identifiers = [
16
- tpl[0]
17
- for tpl in apps.get_model("edc_pharmacy.rx")._default_manager.values_list(
18
- "subject_identifier"
19
- )
20
- ]
21
- for subject_consent in apps.get_model(get_consent_model_name())._default_manager.exclude(
22
- subject_identifier__in=subject_identifiers
23
- ):
24
- site = site_model_cls.objects.get(id=subject_consent.site.id)
25
- create_prescription(
26
- subject_identifier=subject_consent.subject_identifier,
27
- report_datetime=subject_consent.consent_datetime,
28
- randomizer_name=get_meta_version(),
29
- medications=[METFORMIN],
30
- site_id=site.id,
13
+ try:
14
+ medication = apps.get_model("edc_pharmacy.medication")._default_manager.get(
15
+ name=METFORMIN
31
16
  )
32
- for obj in apps.get_model("edc_pharmacy.rx")._default_manager.all():
33
- obj.medications.clear()
34
- obj.medications.add(medication)
17
+ except ObjectDoesNotExist:
18
+ pass
19
+ else:
20
+ site_model_cls = apps.get_model("sites.site")
21
+ subject_identifiers = [
22
+ tpl[0]
23
+ for tpl in apps.get_model("edc_pharmacy.rx")._default_manager.values_list(
24
+ "subject_identifier"
25
+ )
26
+ ]
27
+ for subject_consent in apps.get_model(
28
+ get_consent_model_name()
29
+ )._default_manager.exclude(subject_identifier__in=subject_identifiers):
30
+ site = site_model_cls.objects.get(id=subject_consent.site.id)
31
+ create_prescription(
32
+ subject_identifier=subject_consent.subject_identifier,
33
+ report_datetime=subject_consent.consent_datetime,
34
+ randomizer_name=get_meta_version(),
35
+ medications=[METFORMIN],
36
+ site_id=site.id,
37
+ )
38
+ for obj in apps.get_model("edc_pharmacy.rx")._default_manager.all():
39
+ obj.medications.clear()
40
+ obj.medications.add(medication)
35
41
 
36
42
 
37
43
  class Migration(migrations.Migration):
@@ -4,11 +4,11 @@ from django.db import migrations
4
4
 
5
5
 
6
6
  def update_egfr_drop_action(apps, schema_editor):
7
- action_item_model_cls = apps.get_model("edc_action_item.actionitem")
7
+ # action_item_model_cls = apps.get_model("edc_action_item.actionitem")
8
8
  crf_metadata_model_cls = apps.get_model("edc_metadata.crfmetadata")
9
- action_item_model_cls.objects.filter(
10
- reference_model="meta_subject.egfrnotification"
11
- ).update(reference_model="meta_subject.egfrdropnotification")
9
+ # action_item_model_cls.objects.filter(
10
+ # reference_model="meta_subject.egfrnotification"
11
+ # ).update(reference_model="meta_subject.egfrdropnotification")
12
12
  crf_metadata_model_cls.objects.filter(model="meta_subject.egfrnotification").update(
13
13
  model="meta_subject.egfrdropnotification"
14
14
  )
@@ -1,5 +1,5 @@
1
1
  # Generated by Django 3.2.11 on 2022-07-22 01:11
2
-
2
+ from django.core.exceptions import ObjectDoesNotExist
3
3
  from django.db import migrations
4
4
  from edc_action_item.identifiers import ActionIdentifier
5
5
  from edc_constants.constants import CLOSED, HIGH_PRIORITY
@@ -13,28 +13,33 @@ def update_missing_action_items_for_missed_visits(apps, schema_editor):
13
13
  actionitem_model_cls = apps.get_model("edc_action_item.actionitem")
14
14
  subjectvisitmissed_model_cls = apps.get_model("meta_subject.subjectvisitmissed")
15
15
  subjectvisit_model_cls = apps.get_model("meta_subject.subjectvisit")
16
- action_type = actiontype_model_cls.objects.get(name=MISSED_VISIT_ACTION)
17
-
18
- total = subjectvisitmissed_model_cls.objects.filter(action_identifier__isnull=True).count()
19
- for obj in tqdm(
20
- subjectvisitmissed_model_cls.objects.filter(action_identifier__isnull=True),
21
- total=total,
22
- ):
23
- subject_visit = subjectvisit_model_cls.objects.get(id=obj.subject_visit_id)
24
- action_item = actionitem_model_cls.objects.create(
25
- subject_identifier=subject_visit.subject_identifier,
26
- action_identifier=ActionIdentifier(site_id=subject_visit.site_id).identifier,
27
- report_datetime=subject_visit.report_datetime,
28
- action_type=action_type,
29
- reference_model="meta_subject.subjectvisitmissed",
30
- linked_to_reference=True,
31
- priority=HIGH_PRIORITY,
32
- status=CLOSED,
33
- auto_created=True,
34
- site_id=subject_visit.site_id,
35
- )
36
- obj.action_identifier = action_item.action_identifier
37
- obj.save_base(update_fields=["action_identifier"])
16
+ try:
17
+ action_type = actiontype_model_cls.objects.get(name=MISSED_VISIT_ACTION)
18
+ except ObjectDoesNotExist:
19
+ pass
20
+ else:
21
+ total = subjectvisitmissed_model_cls.objects.filter(
22
+ action_identifier__isnull=True
23
+ ).count()
24
+ for obj in tqdm(
25
+ subjectvisitmissed_model_cls.objects.filter(action_identifier__isnull=True),
26
+ total=total,
27
+ ):
28
+ subject_visit = subjectvisit_model_cls.objects.get(id=obj.subject_visit_id)
29
+ action_item = actionitem_model_cls.objects.create(
30
+ subject_identifier=subject_visit.subject_identifier,
31
+ action_identifier=ActionIdentifier(site_id=subject_visit.site_id).identifier,
32
+ report_datetime=subject_visit.report_datetime,
33
+ action_type=action_type,
34
+ reference_model="meta_subject.subjectvisitmissed",
35
+ linked_to_reference=True,
36
+ priority=HIGH_PRIORITY,
37
+ status=CLOSED,
38
+ auto_created=True,
39
+ site_id=subject_visit.site_id,
40
+ )
41
+ obj.action_identifier = action_item.action_identifier
42
+ obj.save_base(update_fields=["action_identifier"])
38
43
 
39
44
 
40
45
  class Migration(migrations.Migration):
@@ -1,5 +1,5 @@
1
1
  # Generated by Django 3.2.11 on 2022-07-22 15:25
2
-
2
+ from django.core.exceptions import ObjectDoesNotExist
3
3
  from django.db import migrations
4
4
  from tqdm import tqdm
5
5
 
@@ -9,11 +9,15 @@ from meta_pharmacy.constants import METFORMIN
9
9
  def update_rx_missing_medication(apps, schema_editor):
10
10
  medication_model_cls = apps.get_model("edc_pharmacy.medication")
11
11
  rx_model_cls = apps.get_model("edc_pharmacy.rx")
12
- medication = medication_model_cls.objects.get(name=METFORMIN)
13
- total = rx_model_cls.objects.filter(medications__isnull=True).count()
14
- for obj in tqdm(rx_model_cls.objects.filter(medications__isnull=True), total=total):
15
- if not obj.medications.all().exists():
16
- obj.medications.add(medication)
12
+ try:
13
+ medication = medication_model_cls.objects.get(name=METFORMIN)
14
+ except ObjectDoesNotExist:
15
+ pass
16
+ else:
17
+ total = rx_model_cls.objects.filter(medications__isnull=True).count()
18
+ for obj in tqdm(rx_model_cls.objects.filter(medications__isnull=True), total=total):
19
+ if not obj.medications.all().exists():
20
+ obj.medications.add(medication)
17
21
 
18
22
 
19
23
  class Migration(migrations.Migration):
@@ -9,42 +9,46 @@ from tqdm import tqdm
9
9
  def update_revised_egrf(apps, schema_editor):
10
10
  bloodresultrft_model_cls = apps.get_model("meta_subject.bloodresultsrft")
11
11
  subjectvisit_model_cls = apps.get_model("meta_subject.subjectvisit")
12
- subjectscreening_model_cls = apps.get_model("meta_screening.subjectscreening")
13
- total = bloodresultrft_model_cls.objects.all().count()
14
- for obj in tqdm(bloodresultrft_model_cls.objects.all(), total=total):
15
- subject_visit = subjectvisit_model_cls.objects.get(id=obj.subject_visit_id)
16
- subject_screening = subjectscreening_model_cls.objects.get(
17
- subject_identifier=subject_visit.subject_identifier
18
- )
19
- try:
20
- baseline_obj = bloodresultrft_model_cls.objects.get(
21
- subject_visit__subject_identifier=subject_visit.subject_identifier,
22
- subject_visit__visit_code=DAY1,
23
- subject_visit__visit_code_sequence=0,
24
- )
25
- except ObjectDoesNotExist:
26
- pass
27
- else:
28
- obj.old_egfr_value = obj.egfr_value
29
- obj.old_egfr_drop_value = obj.egfr_drop_value
30
- obj.egfr_value = EgfrCkdEpi(
31
- gender=subject_screening.gender,
32
- ethnicity=subject_screening.ethnicity,
33
- age_in_years=subject_screening.age_in_years,
34
- creatinine_value=obj.creatinine_value,
35
- creatinine_units=obj.creatinine_units,
36
- ).value
37
- obj.egfr_drop_value = egfr_percent_change(
38
- float(obj.egfr_value), float(baseline_obj.egfr_value)
39
- )
40
- obj.save_base(
41
- update_fields=[
42
- "egfr_value",
43
- "egfr_drop_value",
44
- "old_egfr_value",
45
- "old_egfr_drop_value",
46
- ]
12
+ try:
13
+ subjectscreening_model_cls = apps.get_model("meta_screening.subjectscreening")
14
+ except LookupError:
15
+ pass
16
+ else:
17
+ total = bloodresultrft_model_cls.objects.all().count()
18
+ for obj in tqdm(bloodresultrft_model_cls.objects.all(), total=total):
19
+ subject_visit = subjectvisit_model_cls.objects.get(id=obj.subject_visit_id)
20
+ subject_screening = subjectscreening_model_cls.objects.get(
21
+ subject_identifier=subject_visit.subject_identifier
47
22
  )
23
+ try:
24
+ baseline_obj = bloodresultrft_model_cls.objects.get(
25
+ subject_visit__subject_identifier=subject_visit.subject_identifier,
26
+ subject_visit__visit_code=DAY1,
27
+ subject_visit__visit_code_sequence=0,
28
+ )
29
+ except ObjectDoesNotExist:
30
+ pass
31
+ else:
32
+ obj.old_egfr_value = obj.egfr_value
33
+ obj.old_egfr_drop_value = obj.egfr_drop_value
34
+ obj.egfr_value = EgfrCkdEpi(
35
+ gender=subject_screening.gender,
36
+ ethnicity=subject_screening.ethnicity,
37
+ age_in_years=subject_screening.age_in_years,
38
+ creatinine_value=obj.creatinine_value,
39
+ creatinine_units=obj.creatinine_units,
40
+ ).value
41
+ obj.egfr_drop_value = egfr_percent_change(
42
+ float(obj.egfr_value), float(baseline_obj.egfr_value)
43
+ )
44
+ obj.save_base(
45
+ update_fields=[
46
+ "egfr_value",
47
+ "egfr_drop_value",
48
+ "old_egfr_value",
49
+ "old_egfr_drop_value",
50
+ ]
51
+ )
48
52
 
49
53
 
50
54
  class Migration(migrations.Migration):
@@ -5,18 +5,22 @@ from tqdm import tqdm
5
5
 
6
6
  def update_rs_missing_ethnicity(apps, schema_editor):
7
7
  register_subject_model_cls = apps.get_model("edc_registration.registeredsubject")
8
- subject_screening_model_cls = apps.get_model("meta_screening.subjectscreening")
9
8
  subject_consent_model_cls = apps.get_model("meta_consent.subjectconsent")
10
- total = subject_consent_model_cls.objects.all().count()
11
- for subject_consent in tqdm(subject_consent_model_cls.objects.all(), total=total):
12
- subject_screening = subject_screening_model_cls.objects.get(
13
- subject_identifier=subject_consent.subject_identifier
14
- )
15
- register_subject = register_subject_model_cls.objects.get(
16
- subject_identifier=subject_consent.subject_identifier
17
- )
18
- register_subject.ethnicity = subject_screening.ethnicity
19
- register_subject.save(update_fields=["ethnicity"])
9
+ try:
10
+ subject_screening_model_cls = apps.get_model("meta_screening.subjectscreening")
11
+ except LookupError:
12
+ pass
13
+ else:
14
+ total = subject_consent_model_cls.objects.all().count()
15
+ for subject_consent in tqdm(subject_consent_model_cls.objects.all(), total=total):
16
+ subject_screening = subject_screening_model_cls.objects.get(
17
+ subject_identifier=subject_consent.subject_identifier
18
+ )
19
+ register_subject = register_subject_model_cls.objects.get(
20
+ subject_identifier=subject_consent.subject_identifier
21
+ )
22
+ register_subject.ethnicity = subject_screening.ethnicity
23
+ register_subject.save(update_fields=["ethnicity"])
20
24
 
21
25
 
22
26
  class Migration(migrations.Migration):
@@ -0,0 +1,46 @@
1
+ # Generated by Django 4.2.11 on 2024-06-10 19:09
2
+
3
+ import django.core.validators
4
+ from django.db import migrations, models
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("meta_subject", "0206_bloodresultsfbc_crf_status_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AlterField(
15
+ model_name="historicalphysicalexam",
16
+ name="waist_circumference",
17
+ field=models.DecimalField(
18
+ blank=True,
19
+ decimal_places=1,
20
+ help_text="in centimeters",
21
+ max_digits=5,
22
+ null=True,
23
+ validators=[
24
+ django.core.validators.MinValueValidator(50.0),
25
+ django.core.validators.MaxValueValidator(175.0),
26
+ ],
27
+ verbose_name="Waist circumference",
28
+ ),
29
+ ),
30
+ migrations.AlterField(
31
+ model_name="physicalexam",
32
+ name="waist_circumference",
33
+ field=models.DecimalField(
34
+ blank=True,
35
+ decimal_places=1,
36
+ help_text="in centimeters",
37
+ max_digits=5,
38
+ null=True,
39
+ validators=[
40
+ django.core.validators.MinValueValidator(50.0),
41
+ django.core.validators.MaxValueValidator(175.0),
42
+ ],
43
+ verbose_name="Waist circumference",
44
+ ),
45
+ ),
46
+ ]
@@ -0,0 +1,62 @@
1
+ # Generated by Django 4.2.11 on 2024-08-01 16:48
2
+
3
+ from django.db import migrations, models
4
+ import edc_crf.model_mixins.crf_status_model_mixin
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("meta_subject", "0207_alter_historicalphysicalexam_waist_circumference_and_more"),
11
+ ]
12
+
13
+ operations = [
14
+ migrations.AddField(
15
+ model_name="birthoutcomes",
16
+ name="crf_status",
17
+ field=models.CharField(
18
+ choices=[
19
+ ("INCOMPLETE", "Incomplete (some data pending)"),
20
+ ("COMPLETE", "Complete"),
21
+ ],
22
+ default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
23
+ help_text="If some data is still pending, flag this CRF as incomplete",
24
+ max_length=25,
25
+ verbose_name="CRF status",
26
+ ),
27
+ ),
28
+ migrations.AddField(
29
+ model_name="birthoutcomes",
30
+ name="crf_status_comments",
31
+ field=models.TextField(
32
+ blank=True,
33
+ help_text="for example, why some data is still pending",
34
+ null=True,
35
+ verbose_name="Any comments related to status of this CRF",
36
+ ),
37
+ ),
38
+ migrations.AddField(
39
+ model_name="historicalbirthoutcomes",
40
+ name="crf_status",
41
+ field=models.CharField(
42
+ choices=[
43
+ ("INCOMPLETE", "Incomplete (some data pending)"),
44
+ ("COMPLETE", "Complete"),
45
+ ],
46
+ default=edc_crf.model_mixins.crf_status_model_mixin.get_crf_status_default,
47
+ help_text="If some data is still pending, flag this CRF as incomplete",
48
+ max_length=25,
49
+ verbose_name="CRF status",
50
+ ),
51
+ ),
52
+ migrations.AddField(
53
+ model_name="historicalbirthoutcomes",
54
+ name="crf_status_comments",
55
+ field=models.TextField(
56
+ blank=True,
57
+ help_text="for example, why some data is still pending",
58
+ null=True,
59
+ verbose_name="Any comments related to status of this CRF",
60
+ ),
61
+ ),
62
+ ]
@@ -0,0 +1,37 @@
1
+ # Generated by Django 5.0.8 on 2024-08-21 13:45
2
+
3
+ import uuid
4
+
5
+ import _socket
6
+ import django.db.models.deletion
7
+ import django_audit_fields.fields.hostname_modification_field
8
+ import django_audit_fields.fields.userfield
9
+ import django_audit_fields.fields.uuid_auto_field
10
+ import django_audit_fields.models.audit_model_mixin
11
+ import django_revision.revision_field
12
+ import edc_crf.model_mixins.crf_status_model_mixin
13
+ import edc_model.validators.date
14
+ import edc_model_fields.fields.other_charfield
15
+ import edc_protocol.validators
16
+ import edc_utils.date
17
+ import edc_visit_tracking.managers
18
+ import simple_history.models
19
+ from django.conf import settings
20
+ from django.db import migrations, models
21
+
22
+
23
+ class Migration(migrations.Migration):
24
+
25
+ dependencies = [
26
+ ("meta_subject", "0208_birthoutcomes_crf_status_and_more"),
27
+ ("sites", "0002_alter_domain_unique"),
28
+ migrations.swappable_dependency(settings.AUTH_USER_MODEL),
29
+ ]
30
+
31
+ operations = [
32
+ migrations.RenameModel(
33
+ old_name="historicaldmdiagnosis",
34
+ new_name="historicaldmendpoint",
35
+ ),
36
+ migrations.RenameModel(old_name="dmdiagnosis", new_name="dmendpoint"),
37
+ ]
@@ -0,0 +1,123 @@
1
+ # Generated by Django 5.0.8 on 2024-08-21 13:48
2
+
3
+ from django.db import migrations, models
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ("meta_subject", "0209_remove_historicaldmdxresult_dm_diagnosis_and_more"),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.RemoveField(
14
+ model_name="dmdxresult",
15
+ name="dm_diagnosis",
16
+ ),
17
+ migrations.RemoveField(
18
+ model_name="dmdxresult",
19
+ name="site",
20
+ ),
21
+ migrations.RemoveField(
22
+ model_name="historicaldmdxresult",
23
+ name="dm_diagnosis",
24
+ ),
25
+ migrations.RemoveField(
26
+ model_name="historicaldmdxresult",
27
+ name="history_user",
28
+ ),
29
+ migrations.RemoveField(
30
+ model_name="historicaldmdxresult",
31
+ name="site",
32
+ ),
33
+ migrations.AlterModelOptions(
34
+ name="dmendpoint",
35
+ options={
36
+ "default_manager_name": "objects",
37
+ "default_permissions": ("add", "change", "delete", "view", "export", "import"),
38
+ "verbose_name": "Diabetes endpoint",
39
+ "verbose_name_plural": "Diabetes endpoint",
40
+ },
41
+ ),
42
+ migrations.AlterModelOptions(
43
+ name="historicaldmendpoint",
44
+ options={
45
+ "get_latest_by": ("history_date", "history_id"),
46
+ "ordering": ("-history_date", "-history_id"),
47
+ "verbose_name": "historical Diabetes endpoint",
48
+ "verbose_name_plural": "historical Diabetes endpoint",
49
+ },
50
+ ),
51
+ migrations.RenameIndex(
52
+ model_name="dmendpoint",
53
+ new_name="meta_subjec_subject_03eaba_idx",
54
+ old_name="meta_subjec_subject_40b1c1_idx",
55
+ ),
56
+ migrations.RenameIndex(
57
+ model_name="dmendpoint",
58
+ new_name="meta_subjec_subject_605359_idx",
59
+ old_name="meta_subjec_subject_2059c2_idx",
60
+ ),
61
+ migrations.AlterField(
62
+ model_name="dmendpoint",
63
+ name="dx_date",
64
+ field=models.DateField(verbose_name="Date endpoint reached"),
65
+ ),
66
+ migrations.AlterField(
67
+ model_name="dmendpoint",
68
+ name="dx_initiated_by",
69
+ field=models.CharField(
70
+ default="QUESTION_RETIRED",
71
+ max_length=25,
72
+ verbose_name="What initiated the diagnosis",
73
+ ),
74
+ ),
75
+ migrations.AlterField(
76
+ model_name="dmendpoint",
77
+ name="dx_tmg",
78
+ field=models.CharField(
79
+ choices=[
80
+ ("Yes", "Yes"),
81
+ ("No", "No"),
82
+ ("QUESTION_RETIRED", "Question retired"),
83
+ ],
84
+ default="QUESTION_RETIRED",
85
+ max_length=25,
86
+ verbose_name="Was this case discussed with the TMG?",
87
+ ),
88
+ ),
89
+ migrations.AlterField(
90
+ model_name="historicaldmendpoint",
91
+ name="dx_date",
92
+ field=models.DateField(verbose_name="Date endpoint reached"),
93
+ ),
94
+ migrations.AlterField(
95
+ model_name="historicaldmendpoint",
96
+ name="dx_initiated_by",
97
+ field=models.CharField(
98
+ default="QUESTION_RETIRED",
99
+ max_length=25,
100
+ verbose_name="What initiated the diagnosis",
101
+ ),
102
+ ),
103
+ migrations.AlterField(
104
+ model_name="historicaldmendpoint",
105
+ name="dx_tmg",
106
+ field=models.CharField(
107
+ choices=[
108
+ ("Yes", "Yes"),
109
+ ("No", "No"),
110
+ ("QUESTION_RETIRED", "Question retired"),
111
+ ],
112
+ default="QUESTION_RETIRED",
113
+ max_length=25,
114
+ verbose_name="Was this case discussed with the TMG?",
115
+ ),
116
+ ),
117
+ migrations.DeleteModel(
118
+ name="DmDxResult",
119
+ ),
120
+ migrations.DeleteModel(
121
+ name="HistoricalDmDxResult",
122
+ ),
123
+ ]
@@ -0,0 +1,45 @@
1
+ # Generated by Django 5.0.8 on 2024-08-21 23:56
2
+
3
+ from django.db import migrations, models
4
+
5
+
6
+ class Migration(migrations.Migration):
7
+
8
+ dependencies = [
9
+ ("meta_subject", "0210_remove_dmdxresult_dm_diagnosis_and_more"),
10
+ ]
11
+
12
+ operations = [
13
+ migrations.AddField(
14
+ model_name="dmendpoint",
15
+ name="endpoint_reached",
16
+ field=models.CharField(
17
+ choices=[("Yes", "Yes"), ("No", "No")],
18
+ help_text="If YES, the EDC will check for the patient on the Endpoints report.",
19
+ max_length=15,
20
+ null=True,
21
+ verbose_name="Was the patient referred because the diabetes endpoint was reached?",
22
+ ),
23
+ ),
24
+ migrations.AddField(
25
+ model_name="historicaldmendpoint",
26
+ name="endpoint_reached",
27
+ field=models.CharField(
28
+ choices=[("Yes", "Yes"), ("No", "No")],
29
+ help_text="If YES, the EDC will check for the patient on the Endpoints report.",
30
+ max_length=15,
31
+ null=True,
32
+ verbose_name="Was the patient referred because the diabetes endpoint was reached?",
33
+ ),
34
+ ),
35
+ migrations.AlterField(
36
+ model_name="dmendpoint",
37
+ name="dx_date",
38
+ field=models.DateField(null=True, verbose_name="Date endpoint reached"),
39
+ ),
40
+ migrations.AlterField(
41
+ model_name="historicaldmendpoint",
42
+ name="dx_date",
43
+ field=models.DateField(null=True, verbose_name="Date endpoint reached"),
44
+ ),
45
+ ]
@@ -0,0 +1,23 @@
1
+ # Generated by Django 5.0.8 on 2024-08-27 19:22
2
+
3
+ from django.db import migrations
4
+ from django.db.migrations import RunPython
5
+ from edc_constants.constants import NO, YES
6
+
7
+
8
+ def update_old_fasting_choices(apps, schema_editor):
9
+ result = {"fasting": 0, "non_fasting": 0}
10
+ model_cls = apps.get_model("meta_subject.glucosefbg")
11
+ result["fasting"] = model_cls.objects.filter(fasting="fasting").update(fasting=YES)
12
+ result["non_fasting"] = model_cls.objects.filter(fasting="non_fasting").update(fasting=NO)
13
+ print(f"Updated: results are {result}")
14
+ print("Done.")
15
+
16
+
17
+ class Migration(migrations.Migration):
18
+
19
+ dependencies = [
20
+ ("meta_subject", "0211_dmendpoint_endpoint_reached_and_more"),
21
+ ]
22
+
23
+ operations = [RunPython(update_old_fasting_choices)]
@@ -0,0 +1,35 @@
1
+ # Generated by Django 5.0.8 on 2024-08-28 19:54
2
+
3
+ from django.conf import settings
4
+ from django.db import migrations
5
+
6
+
7
+ class Migration(migrations.Migration):
8
+
9
+ dependencies = [
10
+ ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
11
+ ("meta_subject", "0212_auto_20240827_2222"),
12
+ ("sites", "0002_alter_domain_unique"),
13
+ migrations.swappable_dependency(settings.AUTH_USER_MODEL),
14
+ ]
15
+
16
+ operations = [
17
+ migrations.RenameModel(
18
+ old_name="BloodResultsLipid",
19
+ new_name="BloodResultsLipids",
20
+ ),
21
+ migrations.RenameModel(
22
+ old_name="HistoricalBloodResultsLipid",
23
+ new_name="HistoricalBloodResultsLipids",
24
+ ),
25
+ migrations.RenameIndex(
26
+ model_name="bloodresultslipids",
27
+ new_name="meta_subjec_subject_eff3e6_idx",
28
+ old_name="meta_subjec_subject_296de9_idx",
29
+ ),
30
+ migrations.RenameIndex(
31
+ model_name="bloodresultslipids",
32
+ new_name="meta_subjec_subject_49b971_idx",
33
+ old_name="meta_subjec_subject_9692a2_idx",
34
+ ),
35
+ ]