meta-edc 0.3.15__py3-none-any.whl → 0.3.50__py3-none-any.whl

Sign up to get free protection for your applications and to get access to all the features.
Files changed (333) hide show
  1. meta_ae/action_items.py +2 -2
  2. meta_ae/migrations/0017_auto_20221130_2257.py +12 -7
  3. meta_ae/tests/holidays.csv +1 -1
  4. meta_analytics/README.rst +17 -0
  5. meta_analytics/dataframes/__init__.py +19 -0
  6. meta_analytics/dataframes/constants.py +33 -0
  7. meta_analytics/dataframes/enrolled/__init__.py +1 -0
  8. meta_analytics/dataframes/enrolled/get_glucose_df.py +122 -0
  9. meta_analytics/dataframes/get_eos_df.py +26 -0
  10. meta_analytics/dataframes/get_last_imp_visits_df.py +101 -0
  11. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  12. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +183 -0
  13. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +531 -0
  14. meta_analytics/dataframes/screening/__init__.py +2 -0
  15. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +20 -0
  16. meta_analytics/dataframes/screening/get_screening_df.py +163 -0
  17. meta_analytics/dataframes/utils.py +65 -0
  18. meta_analytics/get_tables.py +81 -0
  19. meta_analytics/tables/__init__.py +2 -0
  20. meta_analytics/tables/eligible.py +106 -0
  21. meta_analytics/tables/enrolled/__init__.py +0 -0
  22. meta_analytics/tables/enrolled/glucose.py +28 -0
  23. meta_analytics/tables/has_dm.py +61 -0
  24. meta_analytics/tests/__init__.py +0 -0
  25. meta_analytics/tests/test_endpoints_by_date.py +94 -0
  26. meta_auth/auth_objects.py +22 -0
  27. meta_auth/auths.py +18 -3
  28. meta_consent/action_items.py +18 -1
  29. meta_consent/admin/__init__.py +1 -0
  30. meta_consent/admin/subject_consent_v1_ext_admin.py +45 -0
  31. meta_consent/baker_recipes.py +1 -0
  32. meta_consent/consents.py +20 -1
  33. meta_consent/constants.py +1 -0
  34. meta_consent/forms/__init__.py +1 -0
  35. meta_consent/forms/subject_consent_v1_ext_form.py +16 -0
  36. meta_consent/locale/lg/LC_MESSAGES/django.po +69 -0
  37. meta_consent/locale/sw/LC_MESSAGES/django.po +12 -12
  38. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +544 -0
  39. meta_consent/migrations/0027_auto_20250111_0344.py +30 -0
  40. meta_consent/models/__init__.py +1 -0
  41. meta_consent/models/signals.py +18 -0
  42. meta_consent/models/subject_consent_v1_ext.py +29 -0
  43. meta_consent/tests/holidays.csv +1 -1
  44. meta_dashboard/locale/lg/LC_MESSAGES/django.po +30 -0
  45. meta_dashboard/locale/sw/LC_MESSAGES/django.po +11 -2
  46. meta_dashboard/navbars.py +3 -1
  47. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/eligibility_button.html +1 -1
  48. meta_dashboard/templates/meta_dashboard/bootstrap3/buttons/screening_button.html +1 -1
  49. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard/sidebar.html +24 -0
  50. meta_dashboard/templates/meta_dashboard/bootstrap3/subject/dashboard.html +3 -0
  51. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  52. meta_dashboard/tests/holidays.csv +1 -1
  53. meta_dashboard/tests/urls.py +0 -1
  54. meta_dashboard/view_utils/__init__.py +6 -0
  55. meta_dashboard/view_utils/subject_screening_button.py +2 -2
  56. meta_dashboard/views/subject/dashboard/dashboard_view.py +38 -0
  57. meta_edc/__init__.py +7 -0
  58. meta_edc/celery.py +4 -13
  59. meta_edc/celery_live.py +18 -0
  60. meta_edc/celery_uat.py +24 -0
  61. meta_edc/management/commands/update_forms_reference.py +6 -2
  62. meta_edc/migrations/__init__.py +0 -0
  63. meta_edc/navbars.py +2 -1
  64. meta_edc/settings/debug.py +10 -2
  65. meta_edc/settings/defaults.py +58 -43
  66. meta_edc/templates/meta_edc/bootstrap3/home.html +5 -2
  67. meta_edc/tests/tests/test_endpoints.py +2 -0
  68. meta_edc/urls.py +4 -1
  69. meta_edc/wsgi.py +1 -1
  70. meta_edc/wsgi_live.py +1 -1
  71. meta_edc/wsgi_uat.py +1 -1
  72. meta_edc-0.3.50.dist-info/AUTHORS +0 -0
  73. meta_edc-0.3.50.dist-info/METADATA +766 -0
  74. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/RECORD +316 -127
  75. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/WHEEL +1 -1
  76. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/top_level.txt +1 -0
  77. meta_pharmacy/admin/__init__.py +2 -0
  78. meta_pharmacy/admin/rx_admin.py +75 -0
  79. meta_pharmacy/admin/substitutions_admin.py +67 -0
  80. meta_pharmacy/admin_site.py +9 -0
  81. meta_pharmacy/apps.py +5 -0
  82. meta_pharmacy/constants.py +10 -0
  83. meta_pharmacy/forms/__init__.py +2 -0
  84. meta_pharmacy/forms/rx_form.py +16 -0
  85. meta_pharmacy/forms/substitutions_form.py +54 -0
  86. meta_pharmacy/label_configs.py +30 -0
  87. meta_pharmacy/labels/__init__.py +5 -0
  88. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +62 -0
  89. meta_pharmacy/labels/draw_label_for_subject_with_code128.py +14 -0
  90. meta_pharmacy/labels/draw_label_with_test_data.py +26 -0
  91. meta_pharmacy/labels/label_data.py +14 -0
  92. meta_pharmacy/labels/print_sheets.py +97 -0
  93. meta_pharmacy/list_data.py +8 -0
  94. meta_pharmacy/management/__init__.py +0 -0
  95. meta_pharmacy/management/commands/__init__.py +0 -0
  96. meta_pharmacy/management/commands/update_initial_pharmacy_data.py +10 -0
  97. meta_pharmacy/migrations/0002_initial.py +695 -0
  98. meta_pharmacy/migrations/0003_auto_20240909_2335.py +64 -0
  99. meta_pharmacy/migrations/0004_alter_historicalsubstitutions_report_datetime_and_more.py +23 -0
  100. meta_pharmacy/migrations/0005_auto_20240911_0352.py +17 -0
  101. meta_pharmacy/migrations/0006_lotnumber_label.py +289 -0
  102. meta_pharmacy/migrations/0007_lotnumber_medication.py +24 -0
  103. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +390 -0
  104. meta_pharmacy/migrations/0009_remove_historicalrx_slug.py +17 -0
  105. meta_pharmacy/models/__init__.py +3 -0
  106. meta_pharmacy/models/label_data.py +38 -0
  107. meta_pharmacy/models/rx.py +18 -0
  108. meta_pharmacy/models/rx_label.py +39 -0
  109. meta_pharmacy/models/substitutions.py +88 -0
  110. meta_pharmacy/urls.py +8 -0
  111. meta_pharmacy/utils/__init__.py +1 -0
  112. meta_pharmacy/utils/update_initial_pharmacy_data.py +146 -0
  113. meta_prn/action_items.py +9 -1
  114. meta_prn/admin/pregnancy_notification_admin.py +6 -2
  115. meta_prn/migrations/0034_auto_20220630_1110.py +3 -3
  116. meta_prn/migrations/0035_auto_20220630_1140.py +59 -56
  117. meta_prn/tests/tests/test_dm_referral.py +3 -6
  118. meta_reports/__init__.py +1 -0
  119. meta_reports/admin/__init__.py +15 -0
  120. meta_reports/admin/dbviews/__init__.py +14 -0
  121. meta_reports/admin/dbviews/glucose_summary_admin.py +116 -0
  122. meta_reports/admin/dbviews/imp_substitutions_admin.py +101 -0
  123. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +2 -0
  124. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +53 -0
  125. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +84 -0
  126. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +1 -0
  127. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +13 -0
  128. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +1 -0
  129. meta_reports/admin/dbviews/on_study_missing_values_admin/unmanaged_model_admin.py +13 -0
  130. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +58 -0
  131. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +47 -0
  132. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +35 -0
  133. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +34 -0
  134. meta_reports/admin/endpoints_admin.py +14 -0
  135. meta_reports/admin/endpoints_all_admin.py +13 -0
  136. meta_reports/admin/last_imp_refill_admin.py +181 -0
  137. meta_reports/admin/list_filters.py +30 -0
  138. meta_reports/admin/modeladmin_mixins.py +112 -0
  139. meta_reports/admin_site.py +5 -0
  140. meta_reports/apps.py +1 -16
  141. meta_reports/forms/__init__.py +1 -0
  142. meta_reports/forms/missing_ogtt_note_form.py +33 -0
  143. meta_reports/management/__init__.py +0 -0
  144. meta_reports/management/commands/__init__.py +0 -0
  145. meta_reports/management/commands/generate_endpoints.py +13 -0
  146. meta_reports/migrations/0001_initial.py +87 -0
  147. meta_reports/migrations/0002_patienthistorymissingbaselinecd4_and_more.py +64 -0
  148. meta_reports/migrations/0003_auto_20240618_0505.py +12 -0
  149. meta_reports/migrations/0004_alter_patienthistorymissingbaselinecd4_table.py +17 -0
  150. meta_reports/migrations/0005_endpoints.py +47 -0
  151. meta_reports/migrations/0006_endpoints_baseline_datetime.py +18 -0
  152. meta_reports/migrations/0007_alter_endpoints_endpoint_label_and_more.py +43 -0
  153. meta_reports/migrations/0008_alter_endpoints_endpoint_label.py +18 -0
  154. meta_reports/migrations/0009_alter_endpoints_options.py +21 -0
  155. meta_reports/migrations/0010_alter_patienthistorymissingbaselinecd4_options_and_more.py +49 -0
  156. meta_reports/migrations/0011_auto_20240813_0156.py +54 -0
  157. meta_reports/migrations/0012_auto_20240813_1516.py +48 -0
  158. meta_reports/migrations/0013_auto_20240813_1516.py +48 -0
  159. meta_reports/migrations/0014_auto_20240813_1517.py +48 -0
  160. meta_reports/migrations/0015_alter_endpoints_site.py +22 -0
  161. meta_reports/migrations/0016_missingscreeningogtt.py +47 -0
  162. meta_reports/migrations/0017_auto_20240819_1711.py +166 -0
  163. meta_reports/migrations/0018_auto_20240819_1713.py +54 -0
  164. meta_reports/migrations/0019_auto_20240819_1721.py +54 -0
  165. meta_reports/migrations/0020_auto_20240819_1811.py +54 -0
  166. meta_reports/migrations/0021_auto_20240819_1817.py +54 -0
  167. meta_reports/migrations/0022_auto_20240819_1832.py +54 -0
  168. meta_reports/migrations/0023_endpoints_meta_report_subject_a56b22_idx.py +20 -0
  169. meta_reports/migrations/0024_glucosesummary.py +38 -0
  170. meta_reports/migrations/0025_auto_20240822_0115.py +87 -0
  171. meta_reports/migrations/0026_auto_20240822_0120.py +54 -0
  172. meta_reports/migrations/0027_auto_20240822_0140.py +54 -0
  173. meta_reports/migrations/0028_alter_glucosesummary_options.py +22 -0
  174. meta_reports/migrations/0029_auto_20240822_0149.py +54 -0
  175. meta_reports/migrations/0030_auto_20240822_1637.py +54 -0
  176. meta_reports/migrations/0031_endpointsproxy.py +25 -0
  177. meta_reports/migrations/0032_alter_endpointsproxy_options.py +21 -0
  178. meta_reports/migrations/0033_auto_20240823_0012.py +54 -0
  179. meta_reports/migrations/0034_auto_20240823_1642.py +54 -0
  180. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +457 -0
  181. meta_reports/migrations/0036_historicalmissingogttnote_fasting_and_more.py +86 -0
  182. meta_reports/migrations/0037_historicalmissingogttnote_result_status_and_more.py +51 -0
  183. meta_reports/migrations/0038_alter_historicalmissingogttnote_fasting_and_more.py +33 -0
  184. meta_reports/migrations/0039_onstudymissingvalues.py +44 -0
  185. meta_reports/migrations/0040_auto_20240824_0412.py +282 -0
  186. meta_reports/migrations/0041_auto_20240828_2229.py +14 -0
  187. meta_reports/migrations/0042_onstudymissinglabvalues.py +43 -0
  188. meta_reports/migrations/0043_auto_20240828_2309.py +88 -0
  189. meta_reports/migrations/0044_auto_20240828_2323.py +93 -0
  190. meta_reports/migrations/0045_auto_20240829_0248.py +54 -0
  191. meta_reports/migrations/0046_auto_20240829_0250.py +54 -0
  192. meta_reports/migrations/0047_impsubstitutions.py +56 -0
  193. meta_reports/migrations/0048_auto_20240909_2338.py +48 -0
  194. meta_reports/migrations/0049_auto_20240911_0327.py +54 -0
  195. meta_reports/migrations/0050_alter_endpoints_created.py +19 -0
  196. meta_reports/migrations/0051_remove_endpoints_baseline_datetime_and_more.py +40 -0
  197. meta_reports/migrations/0052_lastimpvisit.py +57 -0
  198. meta_reports/migrations/0053_rename_lastimpvisit_lastimprefill_and_more.py +31 -0
  199. meta_reports/models/__init__.py +16 -0
  200. meta_reports/models/dbviews/README +14 -0
  201. meta_reports/models/dbviews/__init__.py +9 -0
  202. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  203. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +35 -0
  204. meta_reports/models/dbviews/glucose_summary/view_definition.py +28 -0
  205. meta_reports/models/dbviews/imp_substitutions/__init__.py +1 -0
  206. meta_reports/models/dbviews/imp_substitutions/unmanaged_model.py +41 -0
  207. meta_reports/models/dbviews/imp_substitutions/view_definition.py +21 -0
  208. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  209. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +57 -0
  210. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +41 -0
  211. meta_reports/models/dbviews/missing_screening_ogtt/view_definition.py +20 -0
  212. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +1 -0
  213. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +53 -0
  214. meta_reports/models/dbviews/on_study_missing_lab_values/unmanged_model.py +20 -0
  215. meta_reports/models/dbviews/on_study_missing_lab_values/view_definition.py +17 -0
  216. meta_reports/models/dbviews/on_study_missing_values/__init__.py +1 -0
  217. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +54 -0
  218. meta_reports/models/dbviews/on_study_missing_values/unmanged_model.py +20 -0
  219. meta_reports/models/dbviews/on_study_missing_values/view_definition.py +17 -0
  220. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +1 -0
  221. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/unmanaged_model.py +31 -0
  222. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/view_definition.py +21 -0
  223. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +1 -0
  224. meta_reports/models/dbviews/unattended_three_in_row/unmanaged_model.py +29 -0
  225. meta_reports/models/dbviews/unattended_three_in_row/view_definition.py +31 -0
  226. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +1 -0
  227. meta_reports/models/dbviews/unattended_three_in_row2/unmanaged_model.py +29 -0
  228. meta_reports/models/dbviews/unattended_three_in_row2/view_definition.py +50 -0
  229. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +1 -0
  230. meta_reports/models/dbviews/unattended_two_in_row/unmanaged_model.py +27 -0
  231. meta_reports/models/dbviews/unattended_two_in_row/view_definition.py +30 -0
  232. meta_reports/models/endpoints.py +31 -0
  233. meta_reports/models/endpoints_proxy.py +11 -0
  234. meta_reports/models/last_imp_refill.py +34 -0
  235. meta_reports/tasks.py +12 -0
  236. meta_reports/templates/meta_reports/columns/subject_identifier_column.html +1 -0
  237. meta_reports/templates/meta_reports/endpoints_all_change_list_note.html +12 -0
  238. meta_reports/templates/meta_reports/endpoints_change_list_note.html +12 -0
  239. meta_reports/tests/test_sql_gen.py +5 -0
  240. meta_reports/urls.py +8 -0
  241. meta_reports/utils.py +0 -0
  242. meta_screening/admin/subject_screening_admin.py +1 -0
  243. meta_screening/migrations/0067_alter_historicalscreeningpartone_report_datetime_and_more.py +84 -0
  244. meta_screening/tests/holidays.csv +1 -1
  245. meta_screening/tests/meta_test_case_mixin.py +15 -0
  246. meta_sites/tests/test_sites.py +1 -1
  247. meta_subject/action_items.py +2 -2
  248. meta_subject/admin/__init__.py +2 -1
  249. meta_subject/admin/birth_outcome_admin.py +2 -0
  250. meta_subject/admin/blood_results/__init__.py +1 -1
  251. meta_subject/admin/blood_results/{blood_results_lipid_admin.py → blood_results_lipids_admin.py} +7 -7
  252. meta_subject/admin/diabetes/__init__.py +1 -1
  253. meta_subject/admin/diabetes/dm_endpoint_admin.py +35 -0
  254. meta_subject/admin/glucose_fbg_admin.py +4 -0
  255. meta_subject/admin/other_arv_regimens_admin.py +2 -0
  256. meta_subject/admin/study_medication_admin.py +10 -0
  257. meta_subject/form_validators/__init__.py +1 -1
  258. meta_subject/form_validators/dm_endpoint_form_validator.py +35 -0
  259. meta_subject/forms/__init__.py +2 -2
  260. meta_subject/forms/blood_results/__init__.py +1 -1
  261. meta_subject/forms/blood_results/{blood_results_lipid_form.py → blood_results_lipids_form.py} +5 -5
  262. meta_subject/forms/diabetes/__init__.py +1 -2
  263. meta_subject/forms/diabetes/dm_endpoint_form.py +13 -0
  264. meta_subject/forms/study_medication_form.py +35 -0
  265. meta_subject/locale/lg/LC_MESSAGES/django.po +470 -0
  266. meta_subject/locale/sw/LC_MESSAGES/django.po +191 -89
  267. meta_subject/metadata_rules/metadata_rules.py +7 -0
  268. meta_subject/metadata_rules/predicates.py +45 -8
  269. meta_subject/migrations/0107_auto_20220415_0043.py +28 -22
  270. meta_subject/migrations/0126_auto_20220719_2142.py +4 -4
  271. meta_subject/migrations/0131_auto_20220722_0411.py +28 -23
  272. meta_subject/migrations/0132_auto_20220722_1825.py +10 -6
  273. meta_subject/migrations/0135_auto_20220722_2212.py +39 -35
  274. meta_subject/migrations/0150_auto_20220914_0039.py +15 -11
  275. meta_subject/migrations/0207_alter_historicalphysicalexam_waist_circumference_and_more.py +46 -0
  276. meta_subject/migrations/0208_birthoutcomes_crf_status_and_more.py +62 -0
  277. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +37 -0
  278. meta_subject/migrations/0210_remove_dmdxresult_dm_diagnosis_and_more.py +123 -0
  279. meta_subject/migrations/0211_dmendpoint_endpoint_reached_and_more.py +45 -0
  280. meta_subject/migrations/0212_auto_20240827_2222.py +23 -0
  281. meta_subject/migrations/0213_rename_bloodresultslipid_bloodresultslipids_and_more.py +35 -0
  282. meta_subject/migrations/0214_historicalstudymedication_stock_codes_and_more.py +44 -0
  283. meta_subject/migrations/0215_alter_historicalstudymedication_stock_codes_and_more.py +46 -0
  284. meta_subject/model_mixins/arv_history_model_mixin.py +3 -3
  285. meta_subject/models/__init__.py +3 -2
  286. meta_subject/models/birth_outcomes.py +6 -1
  287. meta_subject/models/blood_results/__init__.py +1 -1
  288. meta_subject/models/blood_results/{blood_results_lipid.py → blood_results_lipids.py} +3 -3
  289. meta_subject/models/diabetes/__init__.py +1 -2
  290. meta_subject/models/diabetes/dm_endpoint.py +61 -0
  291. meta_subject/models/glucose.py +4 -1
  292. meta_subject/models/physical_exam.py +1 -0
  293. meta_subject/models/signals.py +19 -0
  294. meta_subject/models/todo.txt +1 -1
  295. meta_subject/static/meta_subject/slider.css +1 -1
  296. meta_subject/templates/meta_subject/endpoint_review_instructions.html +1 -1
  297. meta_subject/templates/meta_subject/widgets/slider.html +0 -1
  298. meta_subject/tests/holidays.csv +1 -1
  299. meta_subject/tests/tests/test_medication_adherence.py +5 -1
  300. meta_subject/tests/tests/test_metadata_rules.py +2 -2
  301. meta_subject/tests/tests/test_mnsi.py +212 -121
  302. meta_subject/tests/tests/test_sf12.py +0 -12
  303. meta_visit_schedule/constants.py +4 -0
  304. meta_visit_schedule/tests/tests/test_schedule.py +4 -0
  305. meta_visit_schedule/visit_schedules/phase_three/crfs.py +75 -13
  306. meta_visit_schedule/visit_schedules/phase_three/requisitions.py +12 -0
  307. meta_visit_schedule/visit_schedules/phase_three/schedule.py +65 -2
  308. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -1
  309. tests/etc/randomization_list.csv +1 -1
  310. {meta_edc/tests → tests}/etc/randomization_list_phase_three.csv +4 -4
  311. tests/holidays.csv +1 -1
  312. {meta_edc/tests → tests}/test_settings.py +16 -6
  313. meta_edc/tests/etc/user-aes-local.key +0 -1
  314. meta_edc/tests/etc/user-aes-restricted.key +0 -0
  315. meta_edc/tests/etc/user-rsa-local-private.pem +0 -27
  316. meta_edc/tests/etc/user-rsa-local-public.pem +0 -9
  317. meta_edc/tests/etc/user-rsa-restricted-private.pem +0 -27
  318. meta_edc/tests/etc/user-rsa-restricted-public.pem +0 -9
  319. meta_edc/tests/etc/user-salt-local.key +0 -0
  320. meta_edc/tests/etc/user-salt-restricted.key +0 -0
  321. meta_edc-0.3.15.dist-info/METADATA +0 -88
  322. meta_reports/tests/holidays.csv +0 -15
  323. meta_subject/admin/diabetes/dm_diagnosis_admin.py +0 -89
  324. meta_subject/form_validators/dm_diagnosis_form_validator.py +0 -38
  325. meta_subject/form_validators/dm_dx_result_form_validator.py +0 -7
  326. meta_subject/forms/diabetes/dm_diagnosis_form.py +0 -13
  327. meta_subject/forms/diabetes/dm_dx_result_form.py +0 -11
  328. meta_subject/models/diabetes/dm_diagnosis.py +0 -50
  329. meta_subject/models/diabetes/dm_dx_result.py +0 -70
  330. /meta_edc-0.3.15.dist-info/AUTHORS → /meta_analytics/__init__.py +0 -0
  331. /meta_pharmacy/models.py → /meta_analytics/constants.py +0 -0
  332. /meta_reports/models.py → /meta_analytics/notebooks/cleaning/__init__.py +0 -0
  333. {meta_edc-0.3.15.dist-info → meta_edc-0.3.50.dist-info}/LICENSE +0 -0
@@ -0,0 +1,695 @@
1
+ # Generated by Django 5.1 on 2024-09-09 20:35
2
+
3
+ import uuid
4
+
5
+ import _socket
6
+ import django.db.models.deletion
7
+ import django_audit_fields.fields.hostname_modification_field
8
+ import django_audit_fields.fields.userfield
9
+ import django_audit_fields.fields.uuid_auto_field
10
+ import django_audit_fields.models.audit_model_mixin
11
+ import django_revision.revision_field
12
+ import edc_pharmacy.models.prescription.rx
13
+ import edc_sites.managers
14
+ import edc_utils.date
15
+ import simple_history.models
16
+ from django.conf import settings
17
+ from django.db import migrations, models
18
+
19
+ import meta_pharmacy.models
20
+
21
+
22
+ class Migration(migrations.Migration):
23
+
24
+ initial = True
25
+
26
+ dependencies = [
27
+ ("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
28
+ ("edc_pharmacy", "0023_remove_rx_edc_pharmac_modifie_986021_idx_and_more"),
29
+ ("meta_pharmacy", "0001_initial"),
30
+ ("sites", "0002_alter_domain_unique"),
31
+ migrations.swappable_dependency(settings.AUTH_USER_MODEL),
32
+ ]
33
+
34
+ operations = [
35
+ migrations.CreateModel(
36
+ name="Rx",
37
+ fields=[],
38
+ options={
39
+ "proxy": True,
40
+ "indexes": [],
41
+ "constraints": [],
42
+ },
43
+ bases=("edc_pharmacy.rx",),
44
+ managers=[
45
+ ("objects", edc_pharmacy.models.prescription.rx.Manager()),
46
+ ("on_site", edc_sites.managers.CurrentSiteManager()),
47
+ ],
48
+ ),
49
+ migrations.CreateModel(
50
+ name="HistoricalRx",
51
+ fields=[
52
+ (
53
+ "revision",
54
+ django_revision.revision_field.RevisionField(
55
+ blank=True,
56
+ editable=False,
57
+ help_text="System field. Git repository tag:branch:commit.",
58
+ max_length=75,
59
+ null=True,
60
+ verbose_name="Revision",
61
+ ),
62
+ ),
63
+ (
64
+ "created",
65
+ models.DateTimeField(
66
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
67
+ ),
68
+ ),
69
+ (
70
+ "modified",
71
+ models.DateTimeField(
72
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
73
+ ),
74
+ ),
75
+ (
76
+ "user_created",
77
+ django_audit_fields.fields.userfield.UserField(
78
+ blank=True,
79
+ help_text="Updated by admin.save_model",
80
+ max_length=50,
81
+ verbose_name="user created",
82
+ ),
83
+ ),
84
+ (
85
+ "user_modified",
86
+ django_audit_fields.fields.userfield.UserField(
87
+ blank=True,
88
+ help_text="Updated by admin.save_model",
89
+ max_length=50,
90
+ verbose_name="user modified",
91
+ ),
92
+ ),
93
+ (
94
+ "hostname_created",
95
+ models.CharField(
96
+ blank=True,
97
+ default=_socket.gethostname,
98
+ help_text="System field. (modified on create only)",
99
+ max_length=60,
100
+ verbose_name="Hostname created",
101
+ ),
102
+ ),
103
+ (
104
+ "hostname_modified",
105
+ django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
106
+ blank=True,
107
+ help_text="System field. (modified on every save)",
108
+ max_length=50,
109
+ verbose_name="Hostname modified",
110
+ ),
111
+ ),
112
+ (
113
+ "device_created",
114
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
115
+ ),
116
+ (
117
+ "device_modified",
118
+ models.CharField(
119
+ blank=True, max_length=10, verbose_name="Device modified"
120
+ ),
121
+ ),
122
+ (
123
+ "locale_created",
124
+ models.CharField(
125
+ blank=True,
126
+ help_text="Auto-updated by Modeladmin",
127
+ max_length=10,
128
+ null=True,
129
+ verbose_name="Locale created",
130
+ ),
131
+ ),
132
+ (
133
+ "locale_modified",
134
+ models.CharField(
135
+ blank=True,
136
+ help_text="Auto-updated by Modeladmin",
137
+ max_length=10,
138
+ null=True,
139
+ verbose_name="Locale modified",
140
+ ),
141
+ ),
142
+ (
143
+ "id",
144
+ django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
145
+ blank=True,
146
+ db_index=True,
147
+ editable=False,
148
+ help_text="System auto field. UUID primary key.",
149
+ ),
150
+ ),
151
+ ("subject_identifier", models.CharField(max_length=50)),
152
+ (
153
+ "action_identifier",
154
+ models.CharField(blank=True, db_index=True, max_length=50, null=True),
155
+ ),
156
+ (
157
+ "parent_action_identifier",
158
+ models.CharField(
159
+ blank=True,
160
+ help_text="action identifier that links to parent reference model instance.",
161
+ max_length=30,
162
+ null=True,
163
+ ),
164
+ ),
165
+ (
166
+ "related_action_identifier",
167
+ models.CharField(
168
+ blank=True,
169
+ help_text="action identifier that links to related reference model instance.",
170
+ max_length=30,
171
+ null=True,
172
+ ),
173
+ ),
174
+ ("action_item_reason", models.TextField(editable=False, null=True)),
175
+ (
176
+ "slug",
177
+ models.CharField(
178
+ db_index=True,
179
+ default="",
180
+ editable=False,
181
+ help_text="a field used for quick search",
182
+ max_length=250,
183
+ null=True,
184
+ ),
185
+ ),
186
+ (
187
+ "rx_identifier",
188
+ models.CharField(db_index=True, default=uuid.uuid4, max_length=36),
189
+ ),
190
+ ("rx_name", models.CharField(default="study prescription", max_length=36)),
191
+ ("report_datetime", models.DateTimeField(default=edc_utils.date.get_utcnow)),
192
+ (
193
+ "rx_date",
194
+ models.DateField(
195
+ default=edc_utils.date.get_utcnow, verbose_name="Date RX written"
196
+ ),
197
+ ),
198
+ (
199
+ "rx_expiration_date",
200
+ models.DateField(
201
+ blank=True,
202
+ help_text="Leave blank. Will be filled when end of study report is submitted",
203
+ null=True,
204
+ verbose_name="Date RX expires",
205
+ ),
206
+ ),
207
+ (
208
+ "status",
209
+ models.CharField(
210
+ choices=[
211
+ ("New", "New"),
212
+ ("partial", "Partially filled"),
213
+ ("filled", "Filled"),
214
+ ("cancelled", "Cancelled"),
215
+ ],
216
+ default="New",
217
+ max_length=25,
218
+ ),
219
+ ),
220
+ (
221
+ "refill",
222
+ models.IntegerField(
223
+ blank=True,
224
+ help_text="Number of times this prescription may be refilled",
225
+ null=True,
226
+ ),
227
+ ),
228
+ ("rando_sid", models.CharField(blank=True, max_length=25, null=True)),
229
+ ("randomizer_name", models.CharField(blank=True, max_length=25, null=True)),
230
+ (
231
+ "weight_in_kgs",
232
+ models.DecimalField(blank=True, decimal_places=1, max_digits=6, null=True),
233
+ ),
234
+ ("clinician_initials", models.CharField(max_length=3, null=True)),
235
+ (
236
+ "notes",
237
+ models.TextField(
238
+ blank=True,
239
+ help_text="Private notes for pharmacist only",
240
+ max_length=250,
241
+ null=True,
242
+ ),
243
+ ),
244
+ (
245
+ "history_id",
246
+ models.UUIDField(
247
+ default=uuid.uuid4, editable=False, primary_key=True, serialize=False
248
+ ),
249
+ ),
250
+ ("history_date", models.DateTimeField(db_index=True)),
251
+ ("history_change_reason", models.CharField(max_length=100, null=True)),
252
+ (
253
+ "history_type",
254
+ models.CharField(
255
+ choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
256
+ max_length=1,
257
+ ),
258
+ ),
259
+ (
260
+ "action_item",
261
+ models.ForeignKey(
262
+ blank=True,
263
+ db_constraint=False,
264
+ null=True,
265
+ on_delete=django.db.models.deletion.DO_NOTHING,
266
+ related_name="+",
267
+ to="edc_action_item.actionitem",
268
+ ),
269
+ ),
270
+ (
271
+ "history_user",
272
+ models.ForeignKey(
273
+ null=True,
274
+ on_delete=django.db.models.deletion.SET_NULL,
275
+ related_name="+",
276
+ to=settings.AUTH_USER_MODEL,
277
+ ),
278
+ ),
279
+ (
280
+ "parent_action_item",
281
+ models.ForeignKey(
282
+ blank=True,
283
+ db_constraint=False,
284
+ null=True,
285
+ on_delete=django.db.models.deletion.DO_NOTHING,
286
+ related_name="+",
287
+ to="edc_action_item.actionitem",
288
+ ),
289
+ ),
290
+ (
291
+ "registered_subject",
292
+ models.ForeignKey(
293
+ blank=True,
294
+ db_constraint=False,
295
+ null=True,
296
+ on_delete=django.db.models.deletion.DO_NOTHING,
297
+ related_name="+",
298
+ to="edc_registration.registeredsubject",
299
+ verbose_name="Subject Identifier",
300
+ ),
301
+ ),
302
+ (
303
+ "related_action_item",
304
+ models.ForeignKey(
305
+ blank=True,
306
+ db_constraint=False,
307
+ null=True,
308
+ on_delete=django.db.models.deletion.DO_NOTHING,
309
+ related_name="+",
310
+ to="edc_action_item.actionitem",
311
+ ),
312
+ ),
313
+ (
314
+ "site",
315
+ models.ForeignKey(
316
+ blank=True,
317
+ db_constraint=False,
318
+ null=True,
319
+ on_delete=django.db.models.deletion.DO_NOTHING,
320
+ related_name="+",
321
+ to="sites.site",
322
+ ),
323
+ ),
324
+ ],
325
+ options={
326
+ "verbose_name": "historical rx",
327
+ "verbose_name_plural": "historical rxs",
328
+ "ordering": ("-history_date", "-history_id"),
329
+ "get_latest_by": ("history_date", "history_id"),
330
+ },
331
+ bases=(simple_history.models.HistoricalChanges, models.Model),
332
+ ),
333
+ migrations.CreateModel(
334
+ name="HistoricalSubstitutions",
335
+ fields=[
336
+ (
337
+ "revision",
338
+ django_revision.revision_field.RevisionField(
339
+ blank=True,
340
+ editable=False,
341
+ help_text="System field. Git repository tag:branch:commit.",
342
+ max_length=75,
343
+ null=True,
344
+ verbose_name="Revision",
345
+ ),
346
+ ),
347
+ (
348
+ "created",
349
+ models.DateTimeField(
350
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
351
+ ),
352
+ ),
353
+ (
354
+ "modified",
355
+ models.DateTimeField(
356
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
357
+ ),
358
+ ),
359
+ (
360
+ "user_created",
361
+ django_audit_fields.fields.userfield.UserField(
362
+ blank=True,
363
+ help_text="Updated by admin.save_model",
364
+ max_length=50,
365
+ verbose_name="user created",
366
+ ),
367
+ ),
368
+ (
369
+ "user_modified",
370
+ django_audit_fields.fields.userfield.UserField(
371
+ blank=True,
372
+ help_text="Updated by admin.save_model",
373
+ max_length=50,
374
+ verbose_name="user modified",
375
+ ),
376
+ ),
377
+ (
378
+ "hostname_created",
379
+ models.CharField(
380
+ blank=True,
381
+ default=_socket.gethostname,
382
+ help_text="System field. (modified on create only)",
383
+ max_length=60,
384
+ verbose_name="Hostname created",
385
+ ),
386
+ ),
387
+ (
388
+ "hostname_modified",
389
+ django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
390
+ blank=True,
391
+ help_text="System field. (modified on every save)",
392
+ max_length=50,
393
+ verbose_name="Hostname modified",
394
+ ),
395
+ ),
396
+ (
397
+ "device_created",
398
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
399
+ ),
400
+ (
401
+ "device_modified",
402
+ models.CharField(
403
+ blank=True, max_length=10, verbose_name="Device modified"
404
+ ),
405
+ ),
406
+ (
407
+ "locale_created",
408
+ models.CharField(
409
+ blank=True,
410
+ help_text="Auto-updated by Modeladmin",
411
+ max_length=10,
412
+ null=True,
413
+ verbose_name="Locale created",
414
+ ),
415
+ ),
416
+ (
417
+ "locale_modified",
418
+ models.CharField(
419
+ blank=True,
420
+ help_text="Auto-updated by Modeladmin",
421
+ max_length=10,
422
+ null=True,
423
+ verbose_name="Locale modified",
424
+ ),
425
+ ),
426
+ (
427
+ "id",
428
+ django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
429
+ blank=True,
430
+ db_index=True,
431
+ editable=False,
432
+ help_text="System auto field. UUID primary key.",
433
+ ),
434
+ ),
435
+ ("subject_identifier", models.CharField(max_length=50)),
436
+ ("report_datetime", models.DateTimeField()),
437
+ ("row_index", models.IntegerField(null=True)),
438
+ ("sid", models.IntegerField(verbose_name="SID")),
439
+ (
440
+ "visit_no",
441
+ models.IntegerField(blank=True, null=True, verbose_name="Visit Number"),
442
+ ),
443
+ ("dispensed_sid", models.IntegerField(verbose_name="Dispensed SID")),
444
+ (
445
+ "updated_visit_no",
446
+ models.IntegerField(blank=True, null=True, verbose_name="Visit Number"),
447
+ ),
448
+ (
449
+ "updated_subject_identifier",
450
+ models.CharField(
451
+ blank=True, max_length=50, null=True, verbose_name="Taken from subject"
452
+ ),
453
+ ),
454
+ (
455
+ "arm_match",
456
+ models.CharField(
457
+ choices=[
458
+ ("Yes", "Yes"),
459
+ ("No", "No"),
460
+ ("not_evaluated", "Not evaluated"),
461
+ ],
462
+ default="not_evaluated",
463
+ max_length=15,
464
+ ),
465
+ ),
466
+ ("notes", models.TextField(verbose_name="Notes")),
467
+ (
468
+ "history_id",
469
+ models.UUIDField(
470
+ default=uuid.uuid4, editable=False, primary_key=True, serialize=False
471
+ ),
472
+ ),
473
+ ("history_date", models.DateTimeField(db_index=True)),
474
+ ("history_change_reason", models.CharField(max_length=100, null=True)),
475
+ (
476
+ "history_type",
477
+ models.CharField(
478
+ choices=[("+", "Created"), ("~", "Changed"), ("-", "Deleted")],
479
+ max_length=1,
480
+ ),
481
+ ),
482
+ (
483
+ "history_user",
484
+ models.ForeignKey(
485
+ null=True,
486
+ on_delete=django.db.models.deletion.SET_NULL,
487
+ related_name="+",
488
+ to=settings.AUTH_USER_MODEL,
489
+ ),
490
+ ),
491
+ (
492
+ "site",
493
+ models.ForeignKey(
494
+ blank=True,
495
+ db_constraint=False,
496
+ null=True,
497
+ on_delete=django.db.models.deletion.DO_NOTHING,
498
+ related_name="+",
499
+ to="sites.site",
500
+ ),
501
+ ),
502
+ (
503
+ "rx",
504
+ models.ForeignKey(
505
+ blank=True,
506
+ db_constraint=False,
507
+ null=True,
508
+ on_delete=django.db.models.deletion.DO_NOTHING,
509
+ related_name="+",
510
+ to="meta_pharmacy.rx",
511
+ ),
512
+ ),
513
+ ],
514
+ options={
515
+ "verbose_name": "historical IMP Substitution",
516
+ "verbose_name_plural": "historical IMP Substitutions",
517
+ "ordering": ("-history_date", "-history_id"),
518
+ "get_latest_by": ("history_date", "history_id"),
519
+ },
520
+ bases=(simple_history.models.HistoricalChanges, models.Model),
521
+ ),
522
+ migrations.CreateModel(
523
+ name="Substitutions",
524
+ fields=[
525
+ (
526
+ "revision",
527
+ django_revision.revision_field.RevisionField(
528
+ blank=True,
529
+ editable=False,
530
+ help_text="System field. Git repository tag:branch:commit.",
531
+ max_length=75,
532
+ null=True,
533
+ verbose_name="Revision",
534
+ ),
535
+ ),
536
+ (
537
+ "created",
538
+ models.DateTimeField(
539
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
540
+ ),
541
+ ),
542
+ (
543
+ "modified",
544
+ models.DateTimeField(
545
+ blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
546
+ ),
547
+ ),
548
+ (
549
+ "user_created",
550
+ django_audit_fields.fields.userfield.UserField(
551
+ blank=True,
552
+ help_text="Updated by admin.save_model",
553
+ max_length=50,
554
+ verbose_name="user created",
555
+ ),
556
+ ),
557
+ (
558
+ "user_modified",
559
+ django_audit_fields.fields.userfield.UserField(
560
+ blank=True,
561
+ help_text="Updated by admin.save_model",
562
+ max_length=50,
563
+ verbose_name="user modified",
564
+ ),
565
+ ),
566
+ (
567
+ "hostname_created",
568
+ models.CharField(
569
+ blank=True,
570
+ default=_socket.gethostname,
571
+ help_text="System field. (modified on create only)",
572
+ max_length=60,
573
+ verbose_name="Hostname created",
574
+ ),
575
+ ),
576
+ (
577
+ "hostname_modified",
578
+ django_audit_fields.fields.hostname_modification_field.HostnameModificationField(
579
+ blank=True,
580
+ help_text="System field. (modified on every save)",
581
+ max_length=50,
582
+ verbose_name="Hostname modified",
583
+ ),
584
+ ),
585
+ (
586
+ "device_created",
587
+ models.CharField(blank=True, max_length=10, verbose_name="Device created"),
588
+ ),
589
+ (
590
+ "device_modified",
591
+ models.CharField(
592
+ blank=True, max_length=10, verbose_name="Device modified"
593
+ ),
594
+ ),
595
+ (
596
+ "locale_created",
597
+ models.CharField(
598
+ blank=True,
599
+ help_text="Auto-updated by Modeladmin",
600
+ max_length=10,
601
+ null=True,
602
+ verbose_name="Locale created",
603
+ ),
604
+ ),
605
+ (
606
+ "locale_modified",
607
+ models.CharField(
608
+ blank=True,
609
+ help_text="Auto-updated by Modeladmin",
610
+ max_length=10,
611
+ null=True,
612
+ verbose_name="Locale modified",
613
+ ),
614
+ ),
615
+ (
616
+ "id",
617
+ django_audit_fields.fields.uuid_auto_field.UUIDAutoField(
618
+ blank=True,
619
+ editable=False,
620
+ help_text="System auto field. UUID primary key.",
621
+ primary_key=True,
622
+ serialize=False,
623
+ ),
624
+ ),
625
+ ("subject_identifier", models.CharField(max_length=50)),
626
+ ("report_datetime", models.DateTimeField()),
627
+ ("row_index", models.IntegerField(null=True)),
628
+ ("sid", models.IntegerField(verbose_name="SID")),
629
+ (
630
+ "visit_no",
631
+ models.IntegerField(blank=True, null=True, verbose_name="Visit Number"),
632
+ ),
633
+ ("dispensed_sid", models.IntegerField(verbose_name="Dispensed SID")),
634
+ (
635
+ "updated_visit_no",
636
+ models.IntegerField(blank=True, null=True, verbose_name="Visit Number"),
637
+ ),
638
+ (
639
+ "updated_subject_identifier",
640
+ models.CharField(
641
+ blank=True, max_length=50, null=True, verbose_name="Taken from subject"
642
+ ),
643
+ ),
644
+ (
645
+ "arm_match",
646
+ models.CharField(
647
+ choices=[
648
+ ("Yes", "Yes"),
649
+ ("No", "No"),
650
+ ("not_evaluated", "Not evaluated"),
651
+ ],
652
+ default="not_evaluated",
653
+ max_length=15,
654
+ ),
655
+ ),
656
+ ("notes", models.TextField(verbose_name="Notes")),
657
+ (
658
+ "site",
659
+ models.ForeignKey(
660
+ null=True,
661
+ on_delete=django.db.models.deletion.PROTECT,
662
+ related_name="+",
663
+ to="sites.site",
664
+ ),
665
+ ),
666
+ (
667
+ "rx",
668
+ models.ForeignKey(
669
+ blank=True,
670
+ null=True,
671
+ on_delete=django.db.models.deletion.PROTECT,
672
+ to="meta_pharmacy.rx",
673
+ ),
674
+ ),
675
+ ],
676
+ options={
677
+ "verbose_name": "IMP Substitution",
678
+ "verbose_name_plural": "IMP Substitutions",
679
+ "abstract": False,
680
+ "default_permissions": ("add", "change", "delete", "view", "export", "import"),
681
+ "default_manager_name": "objects",
682
+ "indexes": [
683
+ models.Index(
684
+ fields=["sid", "dispensed_sid", "subject_identifier"],
685
+ name="meta_pharma_sid_8172c4_idx",
686
+ ),
687
+ models.Index(fields=["row_index"], name="meta_pharma_row_ind_d06d33_idx"),
688
+ ],
689
+ },
690
+ managers=[
691
+ ("objects", meta_pharmacy.models.MyManager()),
692
+ ("on_site", edc_sites.managers.CurrentSiteManager()),
693
+ ],
694
+ ),
695
+ ]