megadetector 10.0.15__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- megadetector/__init__.py +0 -0
- megadetector/api/__init__.py +0 -0
- megadetector/api/batch_processing/integration/digiKam/setup.py +6 -0
- megadetector/api/batch_processing/integration/digiKam/xmp_integration.py +465 -0
- megadetector/api/batch_processing/integration/eMammal/test_scripts/config_template.py +5 -0
- megadetector/api/batch_processing/integration/eMammal/test_scripts/push_annotations_to_emammal.py +125 -0
- megadetector/api/batch_processing/integration/eMammal/test_scripts/select_images_for_testing.py +55 -0
- megadetector/classification/__init__.py +0 -0
- megadetector/classification/aggregate_classifier_probs.py +108 -0
- megadetector/classification/analyze_failed_images.py +227 -0
- megadetector/classification/cache_batchapi_outputs.py +198 -0
- megadetector/classification/create_classification_dataset.py +626 -0
- megadetector/classification/crop_detections.py +516 -0
- megadetector/classification/csv_to_json.py +226 -0
- megadetector/classification/detect_and_crop.py +853 -0
- megadetector/classification/efficientnet/__init__.py +9 -0
- megadetector/classification/efficientnet/model.py +415 -0
- megadetector/classification/efficientnet/utils.py +608 -0
- megadetector/classification/evaluate_model.py +520 -0
- megadetector/classification/identify_mislabeled_candidates.py +152 -0
- megadetector/classification/json_to_azcopy_list.py +63 -0
- megadetector/classification/json_validator.py +696 -0
- megadetector/classification/map_classification_categories.py +276 -0
- megadetector/classification/merge_classification_detection_output.py +509 -0
- megadetector/classification/prepare_classification_script.py +194 -0
- megadetector/classification/prepare_classification_script_mc.py +228 -0
- megadetector/classification/run_classifier.py +287 -0
- megadetector/classification/save_mislabeled.py +110 -0
- megadetector/classification/train_classifier.py +827 -0
- megadetector/classification/train_classifier_tf.py +725 -0
- megadetector/classification/train_utils.py +323 -0
- megadetector/data_management/__init__.py +0 -0
- megadetector/data_management/animl_to_md.py +161 -0
- megadetector/data_management/annotations/__init__.py +0 -0
- megadetector/data_management/annotations/annotation_constants.py +33 -0
- megadetector/data_management/camtrap_dp_to_coco.py +270 -0
- megadetector/data_management/cct_json_utils.py +566 -0
- megadetector/data_management/cct_to_md.py +184 -0
- megadetector/data_management/cct_to_wi.py +293 -0
- megadetector/data_management/coco_to_labelme.py +284 -0
- megadetector/data_management/coco_to_yolo.py +701 -0
- megadetector/data_management/databases/__init__.py +0 -0
- megadetector/data_management/databases/add_width_and_height_to_db.py +107 -0
- megadetector/data_management/databases/combine_coco_camera_traps_files.py +210 -0
- megadetector/data_management/databases/integrity_check_json_db.py +563 -0
- megadetector/data_management/databases/subset_json_db.py +195 -0
- megadetector/data_management/generate_crops_from_cct.py +200 -0
- megadetector/data_management/get_image_sizes.py +164 -0
- megadetector/data_management/labelme_to_coco.py +559 -0
- megadetector/data_management/labelme_to_yolo.py +349 -0
- megadetector/data_management/lila/__init__.py +0 -0
- megadetector/data_management/lila/create_lila_blank_set.py +556 -0
- megadetector/data_management/lila/create_lila_test_set.py +192 -0
- megadetector/data_management/lila/create_links_to_md_results_files.py +106 -0
- megadetector/data_management/lila/download_lila_subset.py +182 -0
- megadetector/data_management/lila/generate_lila_per_image_labels.py +777 -0
- megadetector/data_management/lila/get_lila_annotation_counts.py +174 -0
- megadetector/data_management/lila/get_lila_image_counts.py +112 -0
- megadetector/data_management/lila/lila_common.py +319 -0
- megadetector/data_management/lila/test_lila_metadata_urls.py +164 -0
- megadetector/data_management/mewc_to_md.py +344 -0
- megadetector/data_management/ocr_tools.py +873 -0
- megadetector/data_management/read_exif.py +964 -0
- megadetector/data_management/remap_coco_categories.py +195 -0
- megadetector/data_management/remove_exif.py +156 -0
- megadetector/data_management/rename_images.py +194 -0
- megadetector/data_management/resize_coco_dataset.py +665 -0
- megadetector/data_management/speciesnet_to_md.py +41 -0
- megadetector/data_management/wi_download_csv_to_coco.py +247 -0
- megadetector/data_management/yolo_output_to_md_output.py +594 -0
- megadetector/data_management/yolo_to_coco.py +984 -0
- megadetector/data_management/zamba_to_md.py +188 -0
- megadetector/detection/__init__.py +0 -0
- megadetector/detection/change_detection.py +840 -0
- megadetector/detection/process_video.py +479 -0
- megadetector/detection/pytorch_detector.py +1451 -0
- megadetector/detection/run_detector.py +1267 -0
- megadetector/detection/run_detector_batch.py +2172 -0
- megadetector/detection/run_inference_with_yolov5_val.py +1314 -0
- megadetector/detection/run_md_and_speciesnet.py +1604 -0
- megadetector/detection/run_tiled_inference.py +1044 -0
- megadetector/detection/tf_detector.py +209 -0
- megadetector/detection/video_utils.py +1379 -0
- megadetector/postprocessing/__init__.py +0 -0
- megadetector/postprocessing/add_max_conf.py +72 -0
- megadetector/postprocessing/categorize_detections_by_size.py +166 -0
- megadetector/postprocessing/classification_postprocessing.py +1943 -0
- megadetector/postprocessing/combine_batch_outputs.py +249 -0
- megadetector/postprocessing/compare_batch_results.py +2110 -0
- megadetector/postprocessing/convert_output_format.py +403 -0
- megadetector/postprocessing/create_crop_folder.py +629 -0
- megadetector/postprocessing/detector_calibration.py +570 -0
- megadetector/postprocessing/generate_csv_report.py +522 -0
- megadetector/postprocessing/load_api_results.py +223 -0
- megadetector/postprocessing/md_to_coco.py +428 -0
- megadetector/postprocessing/md_to_labelme.py +351 -0
- megadetector/postprocessing/md_to_wi.py +41 -0
- megadetector/postprocessing/merge_detections.py +392 -0
- megadetector/postprocessing/postprocess_batch_results.py +2140 -0
- megadetector/postprocessing/remap_detection_categories.py +226 -0
- megadetector/postprocessing/render_detection_confusion_matrix.py +677 -0
- megadetector/postprocessing/repeat_detection_elimination/find_repeat_detections.py +206 -0
- megadetector/postprocessing/repeat_detection_elimination/remove_repeat_detections.py +82 -0
- megadetector/postprocessing/repeat_detection_elimination/repeat_detections_core.py +1665 -0
- megadetector/postprocessing/separate_detections_into_folders.py +795 -0
- megadetector/postprocessing/subset_json_detector_output.py +964 -0
- megadetector/postprocessing/top_folders_to_bottom.py +238 -0
- megadetector/postprocessing/validate_batch_results.py +332 -0
- megadetector/taxonomy_mapping/__init__.py +0 -0
- megadetector/taxonomy_mapping/map_lila_taxonomy_to_wi_taxonomy.py +491 -0
- megadetector/taxonomy_mapping/map_new_lila_datasets.py +211 -0
- megadetector/taxonomy_mapping/prepare_lila_taxonomy_release.py +165 -0
- megadetector/taxonomy_mapping/preview_lila_taxonomy.py +543 -0
- megadetector/taxonomy_mapping/retrieve_sample_image.py +71 -0
- megadetector/taxonomy_mapping/simple_image_download.py +231 -0
- megadetector/taxonomy_mapping/species_lookup.py +1008 -0
- megadetector/taxonomy_mapping/taxonomy_csv_checker.py +159 -0
- megadetector/taxonomy_mapping/taxonomy_graph.py +346 -0
- megadetector/taxonomy_mapping/validate_lila_category_mappings.py +83 -0
- megadetector/tests/__init__.py +0 -0
- megadetector/tests/test_nms_synthetic.py +335 -0
- megadetector/utils/__init__.py +0 -0
- megadetector/utils/ct_utils.py +1857 -0
- megadetector/utils/directory_listing.py +199 -0
- megadetector/utils/extract_frames_from_video.py +307 -0
- megadetector/utils/gpu_test.py +125 -0
- megadetector/utils/md_tests.py +2072 -0
- megadetector/utils/path_utils.py +2872 -0
- megadetector/utils/process_utils.py +172 -0
- megadetector/utils/split_locations_into_train_val.py +237 -0
- megadetector/utils/string_utils.py +234 -0
- megadetector/utils/url_utils.py +825 -0
- megadetector/utils/wi_platform_utils.py +968 -0
- megadetector/utils/wi_taxonomy_utils.py +1766 -0
- megadetector/utils/write_html_image_list.py +239 -0
- megadetector/visualization/__init__.py +0 -0
- megadetector/visualization/plot_utils.py +309 -0
- megadetector/visualization/render_images_with_thumbnails.py +243 -0
- megadetector/visualization/visualization_utils.py +1973 -0
- megadetector/visualization/visualize_db.py +630 -0
- megadetector/visualization/visualize_detector_output.py +498 -0
- megadetector/visualization/visualize_video_output.py +705 -0
- megadetector-10.0.15.dist-info/METADATA +115 -0
- megadetector-10.0.15.dist-info/RECORD +147 -0
- megadetector-10.0.15.dist-info/WHEEL +5 -0
- megadetector-10.0.15.dist-info/licenses/LICENSE +19 -0
- megadetector-10.0.15.dist-info/top_level.txt +1 -0
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"""
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json_to_azcopy_list.py
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Given a queried_images.json file output from json_validator.py, generates
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one text file <dataset>_images.txt for every dataset included.
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See: https://github.com/Azure/azure-storage-azcopy/wiki/Listing-specific-files-to-transfer
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"""
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#%% Imports and constants
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import json
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import os
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from tqdm import tqdm
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from megadetector.data_management.megadb import megadb_utils
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from megadetector.utils import sas_blob_utils
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images_dir = ''
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queried_images_json_path = 'run_idfg2/queried_images.json'
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output_dir = 'run_idfg2/'
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#%% Prepare AzCopy list
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with open(queried_images_json_path, 'r') as f:
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js = json.load(f)
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datasets_table = megadb_utils.MegadbUtils().get_datasets_table()
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output_files = {}
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pbar = tqdm(js.items())
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for img_path, img_info in pbar:
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save_path = os.path.join(images_dir, img_path)
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if os.path.exists(save_path):
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continue
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ds, img_file = img_path.split('/', maxsplit=1)
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if ds not in output_files:
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output_path = os.path.join(output_dir, f'{ds}_images.txt')
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output_files[ds] = open(output_path, 'w')
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dataset_info = datasets_table[ds]
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account = dataset_info['storage_account']
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container = dataset_info['container']
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if 'public' in datasets_table[ds]['access']:
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url = sas_blob_utils.build_azure_storage_uri(
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account, container)
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else:
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url = sas_blob_utils.build_azure_storage_uri(
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account, container,
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sas_token=dataset_info['container_sas_key'][1:])
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pbar.write(f'"{url}"')
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output_files[ds].write(img_file + '\n')
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for f in output_files.values():
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f.close()
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