endoreg-db 0.3.6__py3-none-any.whl → 0.3.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (351) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value/.init +0 -0
  14. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  15. endoreg_db/data/case_template/template/base.yaml +7 -7
  16. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  17. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  18. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  19. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  20. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  21. endoreg_db/data/center/data.yaml +59 -59
  22. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  23. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  24. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  25. endoreg_db/data/disease/hepatology.yaml +4 -4
  26. endoreg_db/data/disease/misc.yaml +5 -5
  27. endoreg_db/data/disease/renal.yaml +4 -4
  28. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  30. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  31. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  32. endoreg_db/data/distribution/date/patient.yaml +6 -6
  33. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  34. endoreg_db/data/distribution/numeric/.init +0 -0
  35. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  36. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  37. endoreg_db/data/endoscope_type/data.yaml +10 -10
  38. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  39. endoreg_db/data/event/cardiology.yaml +27 -27
  40. endoreg_db/data/event/neurology.yaml +13 -13
  41. endoreg_db/data/event/surgery.yaml +12 -12
  42. endoreg_db/data/event/thrombembolism.yaml +19 -19
  43. endoreg_db/data/examination/examinations/data.yaml +65 -65
  44. endoreg_db/data/examination/time/data.yaml +47 -47
  45. endoreg_db/data/examination/time-type/data.yaml +7 -7
  46. endoreg_db/data/examination/type/data.yaml +5 -5
  47. endoreg_db/data/gender/data.yaml +18 -18
  48. endoreg_db/data/information_source/data.yaml +30 -30
  49. endoreg_db/data/information_source/medication.yaml +5 -5
  50. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  51. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  52. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  53. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  54. endoreg_db/data/lab_value/hematology.yaml +169 -169
  55. endoreg_db/data/lab_value/hormones.yaml +53 -53
  56. endoreg_db/data/lab_value/lipids.yaml +44 -44
  57. endoreg_db/data/lab_value/misc.yaml +30 -30
  58. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  59. endoreg_db/data/label/label/data.yaml +62 -62
  60. endoreg_db/data/label/label-set/data.yaml +17 -17
  61. endoreg_db/data/label/label-type/data.yaml +6 -6
  62. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  63. endoreg_db/data/medication/tah.yaml +69 -69
  64. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  65. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  66. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  67. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  68. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  69. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  70. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  71. endoreg_db/data/model_type/data.yaml +6 -6
  72. endoreg_db/data/network_device/data.yaml +17 -0
  73. endoreg_db/data/network_device_type/data.yaml +8 -0
  74. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  75. endoreg_db/data/pdf_type/data.yaml +28 -28
  76. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  77. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  78. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  79. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  80. endoreg_db/data/profession/data.yaml +70 -70
  81. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  82. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  83. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  84. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  85. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  86. endoreg_db/data/unit/concentration.yaml +92 -92
  87. endoreg_db/data/unit/data.yaml +17 -17
  88. endoreg_db/data/unit/length.yaml +30 -30
  89. endoreg_db/data/unit/misc.yaml +19 -19
  90. endoreg_db/data/unit/rate.yaml +5 -5
  91. endoreg_db/data/unit/time.yaml +12 -12
  92. endoreg_db/data/unit/volume.yaml +35 -35
  93. endoreg_db/data/unit/weight.yaml +37 -37
  94. endoreg_db/data/waste/data.yaml +11 -11
  95. endoreg_db/forms/__init__.py +2 -2
  96. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  97. endoreg_db/forms/settings/__init__.py +8 -8
  98. endoreg_db/forms/unit.py +5 -5
  99. endoreg_db/management/commands/_load_model_template.py +40 -40
  100. endoreg_db/management/commands/delete_all.py +18 -18
  101. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  102. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  103. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  104. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  105. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  106. endoreg_db/management/commands/import_legacy_images.py +94 -94
  107. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  108. endoreg_db/management/commands/load_active_model_data.py +44 -44
  109. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  110. endoreg_db/management/commands/load_base_db_data.py +132 -128
  111. endoreg_db/management/commands/load_center_data.py +42 -42
  112. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  113. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  114. endoreg_db/management/commands/load_disease_data.py +39 -39
  115. endoreg_db/management/commands/load_distribution_data.py +65 -65
  116. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  117. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  118. endoreg_db/management/commands/load_event_data.py +40 -40
  119. endoreg_db/management/commands/load_examination_data.py +74 -74
  120. endoreg_db/management/commands/load_g_play_data.py +112 -112
  121. endoreg_db/management/commands/load_gender_data.py +43 -43
  122. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  123. endoreg_db/management/commands/load_information_source.py +44 -44
  124. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  125. endoreg_db/management/commands/load_label_data.py +66 -66
  126. endoreg_db/management/commands/load_medication_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  128. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  129. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  130. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  131. endoreg_db/management/commands/load_network_data.py +49 -0
  132. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  133. endoreg_db/management/commands/load_profession_data.py +43 -43
  134. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  135. endoreg_db/management/commands/load_unit_data.py +45 -45
  136. endoreg_db/management/commands/load_user_groups.py +28 -28
  137. endoreg_db/management/commands/register_ai_model.py +65 -65
  138. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  139. endoreg_db/migrations/0001_initial.py +582 -582
  140. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  141. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  142. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  143. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  144. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  145. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  146. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  147. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  148. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  149. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  150. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  151. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  152. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  153. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  154. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  155. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  156. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  157. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  158. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  159. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  160. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  161. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  162. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  163. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  164. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  165. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  166. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  167. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  168. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  169. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  170. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  171. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  172. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  173. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  174. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  175. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  176. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  177. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  178. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  179. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  180. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  181. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  182. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  183. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  184. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  185. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  186. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  187. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  188. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  189. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  190. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  191. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  192. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  193. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  194. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  195. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  196. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  197. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  198. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  199. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  200. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  201. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  202. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  203. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  204. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  205. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  206. endoreg_db/migrations/0068_networkdevicetype_networkdevicetypemanager_and_more.py +57 -0
  207. endoreg_db/models/__init__.py +75 -74
  208. endoreg_db/models/ai_model/__init__.py +3 -3
  209. endoreg_db/models/ai_model/active_model.py +9 -9
  210. endoreg_db/models/ai_model/model_meta.py +24 -24
  211. endoreg_db/models/ai_model/model_type.py +25 -25
  212. endoreg_db/models/ai_model/utils.py +8 -8
  213. endoreg_db/models/annotation/__init__.py +1 -1
  214. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  215. endoreg_db/models/annotation/image_classification.py +26 -26
  216. endoreg_db/models/case_template/__init__.py +5 -5
  217. endoreg_db/models/case_template/case_template.py +81 -81
  218. endoreg_db/models/case_template/case_template_rule.py +276 -276
  219. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  220. endoreg_db/models/case_template/case_template_type.py +27 -27
  221. endoreg_db/models/center/__init__.py +4 -4
  222. endoreg_db/models/center/center.py +24 -24
  223. endoreg_db/models/center/center_product.py +33 -33
  224. endoreg_db/models/center/center_resource.py +18 -18
  225. endoreg_db/models/center/center_waste.py +10 -10
  226. endoreg_db/models/data_file/__init__.py +5 -5
  227. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  228. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  229. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  230. endoreg_db/models/data_file/frame.py +45 -45
  231. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  232. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  233. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  234. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  235. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  236. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  237. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  238. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  239. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  240. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  241. endoreg_db/models/data_file/report_file.py +89 -89
  242. endoreg_db/models/data_file/video/__init__.py +6 -6
  243. endoreg_db/models/data_file/video/import_meta.py +25 -25
  244. endoreg_db/models/data_file/video/video.py +25 -25
  245. endoreg_db/models/data_file/video_segment.py +107 -107
  246. endoreg_db/models/disease.py +55 -55
  247. endoreg_db/models/emission/emission_factor.py +19 -19
  248. endoreg_db/models/event.py +21 -21
  249. endoreg_db/models/examination/__init__.py +3 -3
  250. endoreg_db/models/examination/examination.py +26 -26
  251. endoreg_db/models/examination/examination_time.py +27 -27
  252. endoreg_db/models/examination/examination_time_type.py +24 -24
  253. endoreg_db/models/examination/examination_type.py +18 -18
  254. endoreg_db/models/hardware/__init__.py +1 -1
  255. endoreg_db/models/hardware/endoscope.py +44 -44
  256. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  257. endoreg_db/models/information_source.py +29 -29
  258. endoreg_db/models/label/label.py +84 -84
  259. endoreg_db/models/laboratory/lab_value.py +102 -102
  260. endoreg_db/models/legacy_data/__init__.py +3 -3
  261. endoreg_db/models/legacy_data/image.py +34 -34
  262. endoreg_db/models/medication/medication.py +148 -148
  263. endoreg_db/models/network/__init__.py +2 -0
  264. endoreg_db/models/network/network_device.py +27 -0
  265. endoreg_db/models/network/network_device_type.py +23 -0
  266. endoreg_db/models/other/__init__.py +4 -4
  267. endoreg_db/models/other/distribution.py +215 -215
  268. endoreg_db/models/other/material.py +16 -16
  269. endoreg_db/models/other/resource.py +17 -17
  270. endoreg_db/models/other/transport_route.py +20 -20
  271. endoreg_db/models/other/waste.py +20 -20
  272. endoreg_db/models/patient_examination/__init__.py +35 -35
  273. endoreg_db/models/permissions/__init__.py +44 -44
  274. endoreg_db/models/persons/__init__.py +6 -6
  275. endoreg_db/models/persons/examiner/__init__.py +1 -1
  276. endoreg_db/models/persons/examiner/examiner.py +15 -15
  277. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  278. endoreg_db/models/persons/first_name.py +17 -17
  279. endoreg_db/models/persons/gender.py +22 -22
  280. endoreg_db/models/persons/last_name.py +19 -19
  281. endoreg_db/models/persons/patient/__init__.py +7 -7
  282. endoreg_db/models/persons/patient/case/case.py +30 -30
  283. endoreg_db/models/persons/patient/patient.py +216 -216
  284. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  285. endoreg_db/models/persons/patient/patient_event.py +22 -22
  286. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  287. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  288. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  289. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  290. endoreg_db/models/persons/person.py +31 -31
  291. endoreg_db/models/persons/portal_user_information.py +27 -27
  292. endoreg_db/models/prediction/__init__.py +1 -1
  293. endoreg_db/models/prediction/image_classification.py +37 -37
  294. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  295. endoreg_db/models/product/__init__.py +4 -4
  296. endoreg_db/models/product/product.py +97 -97
  297. endoreg_db/models/product/product_group.py +19 -19
  298. endoreg_db/models/product/product_material.py +24 -24
  299. endoreg_db/models/product/product_weight.py +26 -26
  300. endoreg_db/models/product/reference_product.py +99 -99
  301. endoreg_db/models/questionnaires/__init__.py +114 -114
  302. endoreg_db/models/quiz/__init__.py +1 -1
  303. endoreg_db/models/quiz/quiz_answer.py +41 -41
  304. endoreg_db/models/quiz/quiz_question.py +54 -54
  305. endoreg_db/models/report_reader/__init__.py +1 -1
  306. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  307. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  308. endoreg_db/models/rules/__init__.py +4 -4
  309. endoreg_db/models/rules/rule.py +23 -23
  310. endoreg_db/models/rules/rule_applicator.py +224 -224
  311. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  312. endoreg_db/models/rules/rule_type.py +21 -21
  313. endoreg_db/models/rules/ruleset.py +19 -19
  314. endoreg_db/models/unit.py +21 -21
  315. endoreg_db/queries/__init__.py +4 -4
  316. endoreg_db/queries/annotations/__init__.py +2 -2
  317. endoreg_db/queries/annotations/legacy.py +159 -159
  318. endoreg_db/queries/get/__init__.py +5 -5
  319. endoreg_db/queries/get/center.py +42 -42
  320. endoreg_db/queries/get/model.py +13 -13
  321. endoreg_db/queries/get/patient.py +14 -14
  322. endoreg_db/queries/get/patient_examination.py +20 -20
  323. endoreg_db/queries/get/report_file.py +33 -33
  324. endoreg_db/queries/get/video.py +31 -31
  325. endoreg_db/serializers/__init__.py +9 -9
  326. endoreg_db/serializers/ai_model.py +18 -18
  327. endoreg_db/serializers/annotation.py +17 -17
  328. endoreg_db/serializers/center.py +11 -11
  329. endoreg_db/serializers/examination.py +32 -32
  330. endoreg_db/serializers/frame.py +13 -13
  331. endoreg_db/serializers/hardware.py +20 -20
  332. endoreg_db/serializers/label.py +22 -22
  333. endoreg_db/serializers/patient.py +10 -10
  334. endoreg_db/serializers/prediction.py +15 -15
  335. endoreg_db/serializers/report_file.py +7 -7
  336. endoreg_db/serializers/video.py +27 -27
  337. endoreg_db/tests.py +3 -3
  338. endoreg_db/utils/cropping.py +28 -28
  339. endoreg_db/utils/dataloader.py +92 -92
  340. endoreg_db/utils/file_operations.py +30 -30
  341. endoreg_db/utils/hashs.py +33 -33
  342. endoreg_db/utils/legacy_ocr.py +201 -201
  343. endoreg_db/utils/ocr.py +197 -197
  344. endoreg_db/utils/uuid.py +4 -4
  345. endoreg_db/utils/video_metadata.py +87 -87
  346. endoreg_db/views.py +3 -3
  347. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/LICENSE +674 -674
  348. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/METADATA +3 -1
  349. endoreg_db-0.3.8.dist-info/RECORD +367 -0
  350. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/WHEEL +1 -1
  351. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,148 +1,148 @@
1
- from django.db import models
2
-
3
- class MedicationManager(models.Manager):
4
- def get_by_natural_key(self, name):
5
- return self.get(name=name)
6
-
7
- class Medication(models.Model):
8
- name = models.CharField(max_length=255, unique=True)
9
- name_de = models.CharField(max_length=255, blank=True, null=True)
10
- name_en = models.CharField(max_length=255, blank=True, null=True)
11
- adapt_to_renal_function = models.BooleanField(default = False)
12
- adapt_to_hepatic_function = models.BooleanField(default=False)
13
- adapt_to_indication = models.BooleanField(default=False)
14
- adapt_to_age = models.BooleanField(default=False)
15
- adapt_to_weight = models.BooleanField(default=False)
16
- adapt_to_risk = models.BooleanField(default=False)
17
- default_unit = models.ForeignKey('Unit', on_delete=models.CASCADE)
18
-
19
-
20
- objects = MedicationManager()
21
-
22
- def natural_key(self):
23
- return (self.name,)
24
-
25
- def __str__(self):
26
- return self.name
27
-
28
- class MedicationScheduleManager(models.Manager):
29
- def get_by_natural_key(self, name):
30
- return self.get(name=name)
31
-
32
- class MedicationSchedule(models.Model):
33
- name = models.CharField(max_length=255)
34
- name_de = models.CharField(max_length=255, blank=True, null=True)
35
- name_en = models.CharField(max_length=255, blank=True, null=True)
36
- description = models.TextField(blank=True, null=True)
37
- medication = models.ForeignKey("Medication", on_delete=models.CASCADE)
38
- unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
39
- therapy_duration_d = models.FloatField(blank=True, null=True)
40
- dose = models.FloatField()
41
- intake_times = models.ManyToManyField(
42
- "MedicationIntakeTime",
43
- )
44
-
45
- objects = MedicationScheduleManager()
46
-
47
- def natural_key(self):
48
- return (self.name,)
49
-
50
- def __str__(self):
51
- return self.name
52
-
53
-
54
- class MedicationIntakeTimeManager(models.Manager):
55
- def get_by_natural_key(self, name):
56
- return self.get(name=name)
57
-
58
- class MedicationIntakeTime(models.Model):
59
- name = models.CharField(max_length=255)
60
- name_de = models.CharField(max_length=255, blank=True, null=True)
61
- name_en = models.CharField(max_length=255, blank=True, null=True)
62
- repeats = models.CharField(max_length=20, default = "daily")
63
- time = models.TimeField()
64
-
65
- objects = MedicationIntakeTimeManager()
66
-
67
- def natural_key(self):
68
- return (self.name,)
69
-
70
- def __str__(self):
71
- return self.name
72
-
73
- # IMPLEMENT MEDICATION INDICATION TYPE
74
- class MedicationIndicationTypeManager(models.Manager):
75
- def get_by_natural_key(self, name):
76
- return self.get(name=name)
77
-
78
- class MedicationIndicationType(models.Model):
79
- name = models.CharField(max_length=255, unique=True)
80
- name_de = models.CharField(max_length=255, blank=True, null=True)
81
- name_en = models.CharField(max_length=255, blank=True, null=True)
82
-
83
- objects = MedicationIndicationTypeManager()
84
-
85
- def natural_key(self):
86
- return (self.name,)
87
-
88
- def __str__(self):
89
- return self.name
90
-
91
- @classmethod
92
- def get_random_indication_by_type(cls, name) -> "MedicationIndication":
93
- return cls.objects.get(name=name).medication_indications.order_by('?').first()
94
-
95
-
96
- def get_random_medication_indication(self):
97
- from endoreg_db.models import MedicationIndication
98
- return MedicationIndication.objects.filter(indication_type=self).order_by('?').first()
99
-
100
-
101
- class MedicationIndicationManager(models.Manager):
102
- def get_by_natural_key(self, name):
103
- return self.get(name=name)
104
-
105
- class MedicationIndication(models.Model):
106
- name = models.CharField(max_length=255, unique=True)
107
- indication_type = models.ForeignKey(
108
- "MedicationIndicationType", on_delete=models.CASCADE, related_name="medication_indications"
109
- )
110
- medication_schedules = models.ManyToManyField(
111
- "MedicationSchedule"
112
- )
113
- diseases = models.ManyToManyField(
114
- "Disease"
115
- )
116
- events = models.ManyToManyField(
117
- "Event"
118
- )
119
- classification_choices = models.ManyToManyField(
120
- "DiseaseClassificationChoice"
121
- )
122
- sources = models.ManyToManyField(
123
- "InformationSource"
124
- )
125
-
126
- def get_indication_links(self):
127
- links = {
128
- "medication_schedules": self.medication_schedules,
129
- "diseases": self.diseases,
130
- "events": self.events,
131
- "classification_choices": self.classification_choices
132
- }
133
-
134
- objects = MedicationIndicationManager()
135
-
136
- def natural_key(self):
137
- return (self.name,)
138
-
139
- def __str__(self):
140
- return self.name
141
-
142
- def create_patient_medication_schedules(self, patient):
143
- from endoreg_db.models import PatientMedicationSchedule
144
- for medication_schedule in self.medication_schedules.all():
145
- PatientMedicationSchedule.objects.create(
146
- patient=patient,
147
- medication_schedule=medication_schedule
148
- )
1
+ from django.db import models
2
+
3
+ class MedicationManager(models.Manager):
4
+ def get_by_natural_key(self, name):
5
+ return self.get(name=name)
6
+
7
+ class Medication(models.Model):
8
+ name = models.CharField(max_length=255, unique=True)
9
+ name_de = models.CharField(max_length=255, blank=True, null=True)
10
+ name_en = models.CharField(max_length=255, blank=True, null=True)
11
+ adapt_to_renal_function = models.BooleanField(default = False)
12
+ adapt_to_hepatic_function = models.BooleanField(default=False)
13
+ adapt_to_indication = models.BooleanField(default=False)
14
+ adapt_to_age = models.BooleanField(default=False)
15
+ adapt_to_weight = models.BooleanField(default=False)
16
+ adapt_to_risk = models.BooleanField(default=False)
17
+ default_unit = models.ForeignKey('Unit', on_delete=models.CASCADE)
18
+
19
+
20
+ objects = MedicationManager()
21
+
22
+ def natural_key(self):
23
+ return (self.name,)
24
+
25
+ def __str__(self):
26
+ return self.name
27
+
28
+ class MedicationScheduleManager(models.Manager):
29
+ def get_by_natural_key(self, name):
30
+ return self.get(name=name)
31
+
32
+ class MedicationSchedule(models.Model):
33
+ name = models.CharField(max_length=255)
34
+ name_de = models.CharField(max_length=255, blank=True, null=True)
35
+ name_en = models.CharField(max_length=255, blank=True, null=True)
36
+ description = models.TextField(blank=True, null=True)
37
+ medication = models.ForeignKey("Medication", on_delete=models.CASCADE)
38
+ unit = models.ForeignKey("Unit", on_delete=models.CASCADE)
39
+ therapy_duration_d = models.FloatField(blank=True, null=True)
40
+ dose = models.FloatField()
41
+ intake_times = models.ManyToManyField(
42
+ "MedicationIntakeTime",
43
+ )
44
+
45
+ objects = MedicationScheduleManager()
46
+
47
+ def natural_key(self):
48
+ return (self.name,)
49
+
50
+ def __str__(self):
51
+ return self.name
52
+
53
+
54
+ class MedicationIntakeTimeManager(models.Manager):
55
+ def get_by_natural_key(self, name):
56
+ return self.get(name=name)
57
+
58
+ class MedicationIntakeTime(models.Model):
59
+ name = models.CharField(max_length=255)
60
+ name_de = models.CharField(max_length=255, blank=True, null=True)
61
+ name_en = models.CharField(max_length=255, blank=True, null=True)
62
+ repeats = models.CharField(max_length=20, default = "daily")
63
+ time = models.TimeField()
64
+
65
+ objects = MedicationIntakeTimeManager()
66
+
67
+ def natural_key(self):
68
+ return (self.name,)
69
+
70
+ def __str__(self):
71
+ return self.name
72
+
73
+ # IMPLEMENT MEDICATION INDICATION TYPE
74
+ class MedicationIndicationTypeManager(models.Manager):
75
+ def get_by_natural_key(self, name):
76
+ return self.get(name=name)
77
+
78
+ class MedicationIndicationType(models.Model):
79
+ name = models.CharField(max_length=255, unique=True)
80
+ name_de = models.CharField(max_length=255, blank=True, null=True)
81
+ name_en = models.CharField(max_length=255, blank=True, null=True)
82
+
83
+ objects = MedicationIndicationTypeManager()
84
+
85
+ def natural_key(self):
86
+ return (self.name,)
87
+
88
+ def __str__(self):
89
+ return self.name
90
+
91
+ @classmethod
92
+ def get_random_indication_by_type(cls, name) -> "MedicationIndication":
93
+ return cls.objects.get(name=name).medication_indications.order_by('?').first()
94
+
95
+
96
+ def get_random_medication_indication(self):
97
+ from endoreg_db.models import MedicationIndication
98
+ return MedicationIndication.objects.filter(indication_type=self).order_by('?').first()
99
+
100
+
101
+ class MedicationIndicationManager(models.Manager):
102
+ def get_by_natural_key(self, name):
103
+ return self.get(name=name)
104
+
105
+ class MedicationIndication(models.Model):
106
+ name = models.CharField(max_length=255, unique=True)
107
+ indication_type = models.ForeignKey(
108
+ "MedicationIndicationType", on_delete=models.CASCADE, related_name="medication_indications"
109
+ )
110
+ medication_schedules = models.ManyToManyField(
111
+ "MedicationSchedule"
112
+ )
113
+ diseases = models.ManyToManyField(
114
+ "Disease"
115
+ )
116
+ events = models.ManyToManyField(
117
+ "Event"
118
+ )
119
+ classification_choices = models.ManyToManyField(
120
+ "DiseaseClassificationChoice"
121
+ )
122
+ sources = models.ManyToManyField(
123
+ "InformationSource"
124
+ )
125
+
126
+ def get_indication_links(self):
127
+ links = {
128
+ "medication_schedules": self.medication_schedules,
129
+ "diseases": self.diseases,
130
+ "events": self.events,
131
+ "classification_choices": self.classification_choices
132
+ }
133
+
134
+ objects = MedicationIndicationManager()
135
+
136
+ def natural_key(self):
137
+ return (self.name,)
138
+
139
+ def __str__(self):
140
+ return self.name
141
+
142
+ def create_patient_medication_schedules(self, patient):
143
+ from endoreg_db.models import PatientMedicationSchedule
144
+ for medication_schedule in self.medication_schedules.all():
145
+ PatientMedicationSchedule.objects.create(
146
+ patient=patient,
147
+ medication_schedule=medication_schedule
148
+ )
@@ -0,0 +1,2 @@
1
+ from .network_device import NetworkDevice
2
+ from .network_device_type import NetworkDeviceType
@@ -0,0 +1,27 @@
1
+ # Django db class to store network devices (e.g., servers, clients, switches, etc.)
2
+
3
+ from django.db import models
4
+
5
+ class NetworkDeviceManager(models.Manager):
6
+ # Custom manager for NetworkDevice; defines name as natural key
7
+ def get_by_natural_key(self, name):
8
+ return self.get(name=name)
9
+
10
+ class NetworkDevice(models.Model):
11
+ name = models.CharField(max_length=255)
12
+ ip = models.GenericIPAddressField(blank=True, null=True)
13
+ description = models.CharField(max_length=255)
14
+ device_type = models.ForeignKey("NetworkDeviceType", on_delete=models.CASCADE)
15
+ created = models.DateTimeField(auto_now_add=True)
16
+ updated = models.DateTimeField(auto_now=True)
17
+ objects = NetworkDeviceManager()
18
+
19
+ def __str__(self):
20
+ return self.name
21
+
22
+ class Meta:
23
+ db_table = 'network_devices'
24
+ ordering = ['name']
25
+
26
+ def natural_key(self):
27
+ return (self.name,)
@@ -0,0 +1,23 @@
1
+ # Django db class to store network device types (e.g., server, client, switch, etc.)
2
+
3
+ from django.db import models
4
+
5
+ class NetworkDeviceTypeManager(models.Manager):
6
+ # Custom manager for NetworkDeviceType; defines name as natural key
7
+ def get_by_natural_key(self, name):
8
+ return self.get(name=name)
9
+
10
+ class NetworkDeviceType(models.Model):
11
+ name = models.CharField(max_length=255)
12
+ description = models.CharField(max_length=255)
13
+ created = models.DateTimeField(auto_now_add=True)
14
+ updated = models.DateTimeField(auto_now=True)
15
+ objects = NetworkDeviceTypeManager()
16
+
17
+ def __str__(self):
18
+ return self.name
19
+
20
+ class Meta:
21
+ db_table = 'network_device_types'
22
+ ordering = ['name']
23
+
@@ -1,5 +1,5 @@
1
- from .material import Material
2
- from .resource import Resource
3
- from .transport_route import TransportRoute
4
- from .waste import Waste
1
+ from .material import Material
2
+ from .resource import Resource
3
+ from .transport_route import TransportRoute
4
+ from .waste import Waste
5
5
  from .distribution import *