endoreg-db 0.3.6__py3-none-any.whl → 0.3.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (351) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value/.init +0 -0
  14. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  15. endoreg_db/data/case_template/template/base.yaml +7 -7
  16. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  17. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  18. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  19. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  20. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  21. endoreg_db/data/center/data.yaml +59 -59
  22. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  23. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  24. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  25. endoreg_db/data/disease/hepatology.yaml +4 -4
  26. endoreg_db/data/disease/misc.yaml +5 -5
  27. endoreg_db/data/disease/renal.yaml +4 -4
  28. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  30. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  31. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  32. endoreg_db/data/distribution/date/patient.yaml +6 -6
  33. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  34. endoreg_db/data/distribution/numeric/.init +0 -0
  35. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  36. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  37. endoreg_db/data/endoscope_type/data.yaml +10 -10
  38. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  39. endoreg_db/data/event/cardiology.yaml +27 -27
  40. endoreg_db/data/event/neurology.yaml +13 -13
  41. endoreg_db/data/event/surgery.yaml +12 -12
  42. endoreg_db/data/event/thrombembolism.yaml +19 -19
  43. endoreg_db/data/examination/examinations/data.yaml +65 -65
  44. endoreg_db/data/examination/time/data.yaml +47 -47
  45. endoreg_db/data/examination/time-type/data.yaml +7 -7
  46. endoreg_db/data/examination/type/data.yaml +5 -5
  47. endoreg_db/data/gender/data.yaml +18 -18
  48. endoreg_db/data/information_source/data.yaml +30 -30
  49. endoreg_db/data/information_source/medication.yaml +5 -5
  50. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  51. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  52. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  53. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  54. endoreg_db/data/lab_value/hematology.yaml +169 -169
  55. endoreg_db/data/lab_value/hormones.yaml +53 -53
  56. endoreg_db/data/lab_value/lipids.yaml +44 -44
  57. endoreg_db/data/lab_value/misc.yaml +30 -30
  58. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  59. endoreg_db/data/label/label/data.yaml +62 -62
  60. endoreg_db/data/label/label-set/data.yaml +17 -17
  61. endoreg_db/data/label/label-type/data.yaml +6 -6
  62. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  63. endoreg_db/data/medication/tah.yaml +69 -69
  64. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  65. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  66. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  67. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  68. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  69. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  70. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  71. endoreg_db/data/model_type/data.yaml +6 -6
  72. endoreg_db/data/network_device/data.yaml +17 -0
  73. endoreg_db/data/network_device_type/data.yaml +8 -0
  74. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  75. endoreg_db/data/pdf_type/data.yaml +28 -28
  76. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  77. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  78. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  79. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  80. endoreg_db/data/profession/data.yaml +70 -70
  81. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  82. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  83. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  84. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  85. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  86. endoreg_db/data/unit/concentration.yaml +92 -92
  87. endoreg_db/data/unit/data.yaml +17 -17
  88. endoreg_db/data/unit/length.yaml +30 -30
  89. endoreg_db/data/unit/misc.yaml +19 -19
  90. endoreg_db/data/unit/rate.yaml +5 -5
  91. endoreg_db/data/unit/time.yaml +12 -12
  92. endoreg_db/data/unit/volume.yaml +35 -35
  93. endoreg_db/data/unit/weight.yaml +37 -37
  94. endoreg_db/data/waste/data.yaml +11 -11
  95. endoreg_db/forms/__init__.py +2 -2
  96. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  97. endoreg_db/forms/settings/__init__.py +8 -8
  98. endoreg_db/forms/unit.py +5 -5
  99. endoreg_db/management/commands/_load_model_template.py +40 -40
  100. endoreg_db/management/commands/delete_all.py +18 -18
  101. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  102. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  103. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  104. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  105. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  106. endoreg_db/management/commands/import_legacy_images.py +94 -94
  107. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  108. endoreg_db/management/commands/load_active_model_data.py +44 -44
  109. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  110. endoreg_db/management/commands/load_base_db_data.py +132 -128
  111. endoreg_db/management/commands/load_center_data.py +42 -42
  112. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  113. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  114. endoreg_db/management/commands/load_disease_data.py +39 -39
  115. endoreg_db/management/commands/load_distribution_data.py +65 -65
  116. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  117. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  118. endoreg_db/management/commands/load_event_data.py +40 -40
  119. endoreg_db/management/commands/load_examination_data.py +74 -74
  120. endoreg_db/management/commands/load_g_play_data.py +112 -112
  121. endoreg_db/management/commands/load_gender_data.py +43 -43
  122. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  123. endoreg_db/management/commands/load_information_source.py +44 -44
  124. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  125. endoreg_db/management/commands/load_label_data.py +66 -66
  126. endoreg_db/management/commands/load_medication_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  128. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  129. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  130. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  131. endoreg_db/management/commands/load_network_data.py +49 -0
  132. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  133. endoreg_db/management/commands/load_profession_data.py +43 -43
  134. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  135. endoreg_db/management/commands/load_unit_data.py +45 -45
  136. endoreg_db/management/commands/load_user_groups.py +28 -28
  137. endoreg_db/management/commands/register_ai_model.py +65 -65
  138. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  139. endoreg_db/migrations/0001_initial.py +582 -582
  140. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  141. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  142. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  143. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  144. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  145. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  146. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  147. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  148. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  149. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  150. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  151. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  152. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  153. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  154. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  155. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  156. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  157. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  158. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  159. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  160. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  161. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  162. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  163. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  164. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  165. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  166. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  167. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  168. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  169. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  170. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  171. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  172. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  173. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  174. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  175. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  176. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  177. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  178. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  179. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  180. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  181. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  182. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  183. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  184. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  185. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  186. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  187. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  188. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  189. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  190. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  191. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  192. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  193. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  194. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  195. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  196. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  197. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  198. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  199. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  200. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  201. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  202. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  203. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  204. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  205. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  206. endoreg_db/migrations/0068_networkdevicetype_networkdevicetypemanager_and_more.py +57 -0
  207. endoreg_db/models/__init__.py +75 -74
  208. endoreg_db/models/ai_model/__init__.py +3 -3
  209. endoreg_db/models/ai_model/active_model.py +9 -9
  210. endoreg_db/models/ai_model/model_meta.py +24 -24
  211. endoreg_db/models/ai_model/model_type.py +25 -25
  212. endoreg_db/models/ai_model/utils.py +8 -8
  213. endoreg_db/models/annotation/__init__.py +1 -1
  214. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  215. endoreg_db/models/annotation/image_classification.py +26 -26
  216. endoreg_db/models/case_template/__init__.py +5 -5
  217. endoreg_db/models/case_template/case_template.py +81 -81
  218. endoreg_db/models/case_template/case_template_rule.py +276 -276
  219. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  220. endoreg_db/models/case_template/case_template_type.py +27 -27
  221. endoreg_db/models/center/__init__.py +4 -4
  222. endoreg_db/models/center/center.py +24 -24
  223. endoreg_db/models/center/center_product.py +33 -33
  224. endoreg_db/models/center/center_resource.py +18 -18
  225. endoreg_db/models/center/center_waste.py +10 -10
  226. endoreg_db/models/data_file/__init__.py +5 -5
  227. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  228. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  229. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  230. endoreg_db/models/data_file/frame.py +45 -45
  231. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  232. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  233. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  234. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  235. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  236. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  237. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  238. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  239. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  240. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  241. endoreg_db/models/data_file/report_file.py +89 -89
  242. endoreg_db/models/data_file/video/__init__.py +6 -6
  243. endoreg_db/models/data_file/video/import_meta.py +25 -25
  244. endoreg_db/models/data_file/video/video.py +25 -25
  245. endoreg_db/models/data_file/video_segment.py +107 -107
  246. endoreg_db/models/disease.py +55 -55
  247. endoreg_db/models/emission/emission_factor.py +19 -19
  248. endoreg_db/models/event.py +21 -21
  249. endoreg_db/models/examination/__init__.py +3 -3
  250. endoreg_db/models/examination/examination.py +26 -26
  251. endoreg_db/models/examination/examination_time.py +27 -27
  252. endoreg_db/models/examination/examination_time_type.py +24 -24
  253. endoreg_db/models/examination/examination_type.py +18 -18
  254. endoreg_db/models/hardware/__init__.py +1 -1
  255. endoreg_db/models/hardware/endoscope.py +44 -44
  256. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  257. endoreg_db/models/information_source.py +29 -29
  258. endoreg_db/models/label/label.py +84 -84
  259. endoreg_db/models/laboratory/lab_value.py +102 -102
  260. endoreg_db/models/legacy_data/__init__.py +3 -3
  261. endoreg_db/models/legacy_data/image.py +34 -34
  262. endoreg_db/models/medication/medication.py +148 -148
  263. endoreg_db/models/network/__init__.py +2 -0
  264. endoreg_db/models/network/network_device.py +27 -0
  265. endoreg_db/models/network/network_device_type.py +23 -0
  266. endoreg_db/models/other/__init__.py +4 -4
  267. endoreg_db/models/other/distribution.py +215 -215
  268. endoreg_db/models/other/material.py +16 -16
  269. endoreg_db/models/other/resource.py +17 -17
  270. endoreg_db/models/other/transport_route.py +20 -20
  271. endoreg_db/models/other/waste.py +20 -20
  272. endoreg_db/models/patient_examination/__init__.py +35 -35
  273. endoreg_db/models/permissions/__init__.py +44 -44
  274. endoreg_db/models/persons/__init__.py +6 -6
  275. endoreg_db/models/persons/examiner/__init__.py +1 -1
  276. endoreg_db/models/persons/examiner/examiner.py +15 -15
  277. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  278. endoreg_db/models/persons/first_name.py +17 -17
  279. endoreg_db/models/persons/gender.py +22 -22
  280. endoreg_db/models/persons/last_name.py +19 -19
  281. endoreg_db/models/persons/patient/__init__.py +7 -7
  282. endoreg_db/models/persons/patient/case/case.py +30 -30
  283. endoreg_db/models/persons/patient/patient.py +216 -216
  284. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  285. endoreg_db/models/persons/patient/patient_event.py +22 -22
  286. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  287. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  288. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  289. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  290. endoreg_db/models/persons/person.py +31 -31
  291. endoreg_db/models/persons/portal_user_information.py +27 -27
  292. endoreg_db/models/prediction/__init__.py +1 -1
  293. endoreg_db/models/prediction/image_classification.py +37 -37
  294. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  295. endoreg_db/models/product/__init__.py +4 -4
  296. endoreg_db/models/product/product.py +97 -97
  297. endoreg_db/models/product/product_group.py +19 -19
  298. endoreg_db/models/product/product_material.py +24 -24
  299. endoreg_db/models/product/product_weight.py +26 -26
  300. endoreg_db/models/product/reference_product.py +99 -99
  301. endoreg_db/models/questionnaires/__init__.py +114 -114
  302. endoreg_db/models/quiz/__init__.py +1 -1
  303. endoreg_db/models/quiz/quiz_answer.py +41 -41
  304. endoreg_db/models/quiz/quiz_question.py +54 -54
  305. endoreg_db/models/report_reader/__init__.py +1 -1
  306. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  307. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  308. endoreg_db/models/rules/__init__.py +4 -4
  309. endoreg_db/models/rules/rule.py +23 -23
  310. endoreg_db/models/rules/rule_applicator.py +224 -224
  311. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  312. endoreg_db/models/rules/rule_type.py +21 -21
  313. endoreg_db/models/rules/ruleset.py +19 -19
  314. endoreg_db/models/unit.py +21 -21
  315. endoreg_db/queries/__init__.py +4 -4
  316. endoreg_db/queries/annotations/__init__.py +2 -2
  317. endoreg_db/queries/annotations/legacy.py +159 -159
  318. endoreg_db/queries/get/__init__.py +5 -5
  319. endoreg_db/queries/get/center.py +42 -42
  320. endoreg_db/queries/get/model.py +13 -13
  321. endoreg_db/queries/get/patient.py +14 -14
  322. endoreg_db/queries/get/patient_examination.py +20 -20
  323. endoreg_db/queries/get/report_file.py +33 -33
  324. endoreg_db/queries/get/video.py +31 -31
  325. endoreg_db/serializers/__init__.py +9 -9
  326. endoreg_db/serializers/ai_model.py +18 -18
  327. endoreg_db/serializers/annotation.py +17 -17
  328. endoreg_db/serializers/center.py +11 -11
  329. endoreg_db/serializers/examination.py +32 -32
  330. endoreg_db/serializers/frame.py +13 -13
  331. endoreg_db/serializers/hardware.py +20 -20
  332. endoreg_db/serializers/label.py +22 -22
  333. endoreg_db/serializers/patient.py +10 -10
  334. endoreg_db/serializers/prediction.py +15 -15
  335. endoreg_db/serializers/report_file.py +7 -7
  336. endoreg_db/serializers/video.py +27 -27
  337. endoreg_db/tests.py +3 -3
  338. endoreg_db/utils/cropping.py +28 -28
  339. endoreg_db/utils/dataloader.py +92 -92
  340. endoreg_db/utils/file_operations.py +30 -30
  341. endoreg_db/utils/hashs.py +33 -33
  342. endoreg_db/utils/legacy_ocr.py +201 -201
  343. endoreg_db/utils/ocr.py +197 -197
  344. endoreg_db/utils/uuid.py +4 -4
  345. endoreg_db/utils/video_metadata.py +87 -87
  346. endoreg_db/views.py +3 -3
  347. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/LICENSE +674 -674
  348. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/METADATA +3 -1
  349. endoreg_db-0.3.8.dist-info/RECORD +367 -0
  350. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/WHEEL +1 -1
  351. endoreg_db-0.3.6.dist-info/RECORD +0 -357
endoreg_db/admin.py CHANGED
@@ -1,3 +1,3 @@
1
- from django.contrib import admin
2
-
3
- # Register your models here.
1
+ from django.contrib import admin
2
+
3
+ # Register your models here.
endoreg_db/apps.py CHANGED
@@ -1,6 +1,6 @@
1
- from django.apps import AppConfig
2
-
3
-
4
- class EndoregDbConfig(AppConfig):
5
- default_auto_field = 'django.db.models.BigAutoField'
6
- name = 'endoreg_db'
1
+ from django.apps import AppConfig
2
+
3
+
4
+ class EndoregDbConfig(AppConfig):
5
+ default_auto_field = 'django.db.models.BigAutoField'
6
+ name = 'endoreg_db'
@@ -1,65 +1,68 @@
1
- from pathlib import Path
2
-
3
- DATA_DIR = Path(__file__).parent
4
-
5
- INFORMATION_DATA_DIR = DATA_DIR / "information_source"
6
- UNIT_DATA_DIR = DATA_DIR / "unit"
7
- CENTER_DATA_DIR = DATA_DIR / "center"
8
- EXAMINATION_DATA_DIR = DATA_DIR / "examination"
9
- LABEL_DATA_DIR = DATA_DIR / "label"
10
- MODEL_TYPE_DATA_DIR = DATA_DIR / "model_type"
11
- ENDOSCOPY_PROCESSOR_DATA_DIR = DATA_DIR / "endoscopy_processor"
12
- ENDOSCOPE_TYPE_DATA_DIR = DATA_DIR / "endoscope_type"
13
- ACTIVE_MODEL_DATA_DIR = DATA_DIR / "active_model"
14
- PROFESSION_DATA_DIR = DATA_DIR / "profession"
15
- PDF_TYPE_DATA_DIR = DATA_DIR / "pdf_type"
16
- REPORT_READER_FLAG_DATA_DIR = DATA_DIR / "report_reader_flag"
17
- EVENT_DATA_DIR = DATA_DIR / "event"
18
- GENDER_DATA_DIR = DATA_DIR / "gender"
19
-
20
- # Green Endoscopy Dashboard Stuffs
21
- CENTER_RESOURCE_DATA_DIR = DATA_DIR / "center_resource"
22
- CENTER_WASTE_DATA_DIR = DATA_DIR / "center_waste"
23
- EMISSION_FACTOR_DATA_DIR = DATA_DIR / "emission_factor"
24
- MATERIAL_DATA_DIR = DATA_DIR / "material"
25
- PRODUCT_DATA_DIR = DATA_DIR / "product"
26
- PRODUCT_GROUP_DATA_DIR = DATA_DIR / "product_group"
27
- PRODUCT_MATERIAL_DATA_DIR = DATA_DIR / "product_material"
28
- PRODUCT_WEIGHT_DATA_DIR = DATA_DIR / "product_weight"
29
- REFERENCE_PRODUCT_DATA_DIR = DATA_DIR / "reference_product"
30
- RESOURCE_DATA_DIR = DATA_DIR / "resource"
31
- WASTE_DATA_DIR = DATA_DIR / "waste"
32
- TRANSPORT_ROUTE_DATA_DIR = DATA_DIR / "transport_route"
33
- DISEASE_CLASSIFICATION_DATA_DIR = DATA_DIR / "disease_classification"
34
- DISEASE_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "disease_classification_choice"
35
- DISEASE_DATA_DIR = DATA_DIR / "disease"
36
- MEDICATION_DATA_DIR = DATA_DIR / "medication"
37
- MEDICATION_INDICATION_DATA_DIR = DATA_DIR / "medication_indication"
38
- MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
39
-
40
- DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
41
- DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
42
- DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
43
- DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
44
- DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
45
-
46
- # G-Play Stuffs
47
- CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
48
- CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
49
- CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
50
- CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
51
- CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
52
- CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
53
- CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
54
-
55
-
56
- # To Do
57
- LAB_VALUE_DATA_DIR = DATA_DIR / "lab_value"
58
- PATIENT_LAB_SAMPLE_TYPE_DATA_DIR = DATA_DIR / "patient_lab_sample_type"
59
- MEDICATION_SCHEDULE_DATA_DIR = DATA_DIR / "medication_schedule"
60
- MEDICATION_INTAKE_TIME_DATA_DIR = DATA_DIR / "medication_intake_time"
61
-
62
-
63
- RULE_TYPE_DATA_DIR = DATA_DIR / "rule_type"
64
- RULE_ATTRIBUTE_DTYPE_DATA_DIR = DATA_DIR / "rule_attribute_dtype"
1
+ from pathlib import Path
2
+
3
+ DATA_DIR = Path(__file__).parent
4
+
5
+ INFORMATION_DATA_DIR = DATA_DIR / "information_source"
6
+ UNIT_DATA_DIR = DATA_DIR / "unit"
7
+ CENTER_DATA_DIR = DATA_DIR / "center"
8
+ EXAMINATION_DATA_DIR = DATA_DIR / "examination"
9
+ LABEL_DATA_DIR = DATA_DIR / "label"
10
+ MODEL_TYPE_DATA_DIR = DATA_DIR / "model_type"
11
+ ENDOSCOPY_PROCESSOR_DATA_DIR = DATA_DIR / "endoscopy_processor"
12
+ ENDOSCOPE_TYPE_DATA_DIR = DATA_DIR / "endoscope_type"
13
+ ACTIVE_MODEL_DATA_DIR = DATA_DIR / "active_model"
14
+ PROFESSION_DATA_DIR = DATA_DIR / "profession"
15
+ PDF_TYPE_DATA_DIR = DATA_DIR / "pdf_type"
16
+ REPORT_READER_FLAG_DATA_DIR = DATA_DIR / "report_reader_flag"
17
+ EVENT_DATA_DIR = DATA_DIR / "event"
18
+ GENDER_DATA_DIR = DATA_DIR / "gender"
19
+
20
+ # Green Endoscopy Dashboard Stuffs
21
+ CENTER_RESOURCE_DATA_DIR = DATA_DIR / "center_resource"
22
+ CENTER_WASTE_DATA_DIR = DATA_DIR / "center_waste"
23
+ EMISSION_FACTOR_DATA_DIR = DATA_DIR / "emission_factor"
24
+ MATERIAL_DATA_DIR = DATA_DIR / "material"
25
+ PRODUCT_DATA_DIR = DATA_DIR / "product"
26
+ PRODUCT_GROUP_DATA_DIR = DATA_DIR / "product_group"
27
+ PRODUCT_MATERIAL_DATA_DIR = DATA_DIR / "product_material"
28
+ PRODUCT_WEIGHT_DATA_DIR = DATA_DIR / "product_weight"
29
+ REFERENCE_PRODUCT_DATA_DIR = DATA_DIR / "reference_product"
30
+ RESOURCE_DATA_DIR = DATA_DIR / "resource"
31
+ WASTE_DATA_DIR = DATA_DIR / "waste"
32
+ TRANSPORT_ROUTE_DATA_DIR = DATA_DIR / "transport_route"
33
+ DISEASE_CLASSIFICATION_DATA_DIR = DATA_DIR / "disease_classification"
34
+ DISEASE_CLASSIFICATION_CHOICE_DATA_DIR = DATA_DIR / "disease_classification_choice"
35
+ DISEASE_DATA_DIR = DATA_DIR / "disease"
36
+ MEDICATION_DATA_DIR = DATA_DIR / "medication"
37
+ MEDICATION_INDICATION_DATA_DIR = DATA_DIR / "medication_indication"
38
+ MEDICATION_INDICATION_TYPE_DATA_DIR = DATA_DIR / "medication_indication_type"
39
+
40
+ DISTRIBUTION_BASE_DIR = DATA_DIR / "distribution"
41
+ DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "single_categorical"
42
+ DISTRIBUTION_NUMERIC_DATA_DIR = DISTRIBUTION_BASE_DIR / "numeric"
43
+ DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR = DISTRIBUTION_BASE_DIR / "multiple_categorical"
44
+ DISTRIBUTION_DATE_DATA_DIR = DISTRIBUTION_BASE_DIR / "date"
45
+
46
+ # G-Play Stuffs
47
+ CASE_TEMPLATE_BASE_DIR = DATA_DIR / "case_template"
48
+ CASE_TEMPLATE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template"
49
+ CASE_TEMPLATE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "template_type"
50
+ CASE_TEMPLATE_RULE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule"
51
+ CASE_TEMPLATE_RULE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_type"
52
+ CASE_TEMPLATE_RULE_VALUE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value"
53
+ CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR = CASE_TEMPLATE_BASE_DIR / "rule_value_type"
54
+
55
+ # NETWORK
56
+ NETWORK_DEVICE_DATA_DIR = DATA_DIR / "network_device"
57
+ NETWORK_DEVICE_TYPE_DATA_DIR = DATA_DIR / "network_device_type"
58
+
59
+ # To Do
60
+ LAB_VALUE_DATA_DIR = DATA_DIR / "lab_value"
61
+ PATIENT_LAB_SAMPLE_TYPE_DATA_DIR = DATA_DIR / "patient_lab_sample_type"
62
+ MEDICATION_SCHEDULE_DATA_DIR = DATA_DIR / "medication_schedule"
63
+ MEDICATION_INTAKE_TIME_DATA_DIR = DATA_DIR / "medication_intake_time"
64
+
65
+
66
+ RULE_TYPE_DATA_DIR = DATA_DIR / "rule_type"
67
+ RULE_ATTRIBUTE_DTYPE_DATA_DIR = DATA_DIR / "rule_attribute_dtype"
65
68
  RULESET_DATA_DIR = DATA_DIR / "ruleset"
@@ -1,3 +1,3 @@
1
- - model: endoreg_db.active_model
2
- data:
1
+ - model: endoreg_db.active_model
2
+ data:
3
3
  - name: "multilabel_image_classification"
@@ -1,167 +1,167 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "patient_lab_sample-add_value-sodium-default"
4
- rule_type: "create-object"
5
- parent_model: "PatientLabSample"
6
- parent_field: "sample"
7
- target_model: "PatientLabValue"
8
- extra_parameters: {
9
- "create_method": {
10
- "name": "create_lab_value_by_sample",
11
- "kwargs": {
12
- "lab_value_name": "sodium",
13
- }
14
- },
15
- "actions": [
16
- {
17
- "name": "set_value_by_distribution",
18
- "kwargs": {}
19
- }
20
- ]
21
-
22
- }
23
-
24
- # potassium
25
- - model: endoreg_db.case_template_rule
26
- fields:
27
- name: "patient_lab_sample-add_value-potassium-default"
28
- rule_type: "create-object"
29
- parent_model: "PatientLabSample"
30
- parent_field: "sample"
31
- target_model: "PatientLabValue"
32
- extra_parameters: {
33
- "create_method": {
34
- "name": "create_lab_value_by_sample",
35
- "kwargs": {
36
- "lab_value_name": "potassium",
37
- }
38
- },
39
- "actions": [
40
- {
41
- "name": "set_value_by_distribution",
42
- "kwargs": {}
43
- }
44
- ]
45
-
46
- }
47
-
48
- - model: endoreg_db.case_template_rule
49
- fields:
50
- name: "patient_lab_sample-add_value-hemoglobin-default"
51
- rule_type: "create-object"
52
- parent_model: "PatientLabSample"
53
- parent_field: "sample"
54
- target_model: "PatientLabValue"
55
- extra_parameters: {
56
- "create_method": {
57
- "name": "create_lab_value_by_sample",
58
- "kwargs": {
59
- "lab_value_name": "hemoglobin",
60
- }
61
- },
62
- "actions": [
63
- {
64
- "name": "set_value_by_distribution",
65
- "kwargs": {}
66
- }
67
- ]
68
-
69
- }
70
-
71
- # hematocrit
72
- - model: endoreg_db.case_template_rule
73
- fields:
74
- name: "patient_lab_sample-add_value-hematocrit-default"
75
- rule_type: "create-object"
76
- parent_model: "PatientLabSample"
77
- parent_field: "sample"
78
- target_model: "PatientLabValue"
79
- extra_parameters: {
80
- "create_method": {
81
- "name": "create_lab_value_by_sample",
82
- "kwargs": {
83
- "lab_value_name": "hematocrit",
84
- }
85
- },
86
- "actions": [
87
- {
88
- "name": "set_value_by_distribution",
89
- "kwargs": {}
90
- }
91
- ]
92
-
93
- }
94
-
95
- # platelet count
96
- - model: endoreg_db.case_template_rule
97
- fields:
98
- name: "patient_lab_sample-add_value-platelets-default"
99
- rule_type: "create-object"
100
- parent_model: "PatientLabSample"
101
- parent_field: "sample"
102
- target_model: "PatientLabValue"
103
- extra_parameters: {
104
- "create_method": {
105
- "name": "create_lab_value_by_sample",
106
- "kwargs": {
107
- "lab_value_name": "platelets",
108
- }
109
- },
110
- "actions": [
111
- {
112
- "name": "set_value_by_distribution",
113
- "kwargs": {}
114
- }
115
- ]
116
-
117
- }
118
-
119
- # white cell count
120
- - model: endoreg_db.case_template_rule
121
- fields:
122
- name: "patient_lab_sample-add_value-white_blood_cells-default"
123
- rule_type: "create-object"
124
- parent_model: "PatientLabSample"
125
- parent_field: "sample"
126
- target_model: "PatientLabValue"
127
- extra_parameters: {
128
- "create_method": {
129
- "name": "create_lab_value_by_sample",
130
- "kwargs": {
131
- "lab_value_name": "white_blood_cells",
132
- }
133
- },
134
- "actions": [
135
- {
136
- "name": "set_value_by_distribution",
137
- "kwargs": {}
138
- }
139
- ]
140
-
141
- }
142
-
143
- # estimated glomerular filtration rate
144
- - model: endoreg_db.case_template_rule
145
- fields:
146
- name: "patient_lab_sample-add_value-egfr-default"
147
- rule_type: "create-object"
148
- parent_model: "PatientLabSample"
149
- parent_field: "sample"
150
- target_model: "PatientLabValue"
151
- extra_parameters: {
152
- "create_method": {
153
- "name": "create_lab_value_by_sample",
154
- "kwargs": {
155
- "lab_value_name": "estimated_glomerular_filtration_rate",
156
- }
157
- },
158
- "actions": [
159
- {
160
- "name": "set_value_by_distribution",
161
- "kwargs": {}
162
- }
163
- ]
164
-
165
- }
166
-
167
-
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient_lab_sample-add_value-sodium-default"
4
+ rule_type: "create-object"
5
+ parent_model: "PatientLabSample"
6
+ parent_field: "sample"
7
+ target_model: "PatientLabValue"
8
+ extra_parameters: {
9
+ "create_method": {
10
+ "name": "create_lab_value_by_sample",
11
+ "kwargs": {
12
+ "lab_value_name": "sodium",
13
+ }
14
+ },
15
+ "actions": [
16
+ {
17
+ "name": "set_value_by_distribution",
18
+ "kwargs": {}
19
+ }
20
+ ]
21
+
22
+ }
23
+
24
+ # potassium
25
+ - model: endoreg_db.case_template_rule
26
+ fields:
27
+ name: "patient_lab_sample-add_value-potassium-default"
28
+ rule_type: "create-object"
29
+ parent_model: "PatientLabSample"
30
+ parent_field: "sample"
31
+ target_model: "PatientLabValue"
32
+ extra_parameters: {
33
+ "create_method": {
34
+ "name": "create_lab_value_by_sample",
35
+ "kwargs": {
36
+ "lab_value_name": "potassium",
37
+ }
38
+ },
39
+ "actions": [
40
+ {
41
+ "name": "set_value_by_distribution",
42
+ "kwargs": {}
43
+ }
44
+ ]
45
+
46
+ }
47
+
48
+ - model: endoreg_db.case_template_rule
49
+ fields:
50
+ name: "patient_lab_sample-add_value-hemoglobin-default"
51
+ rule_type: "create-object"
52
+ parent_model: "PatientLabSample"
53
+ parent_field: "sample"
54
+ target_model: "PatientLabValue"
55
+ extra_parameters: {
56
+ "create_method": {
57
+ "name": "create_lab_value_by_sample",
58
+ "kwargs": {
59
+ "lab_value_name": "hemoglobin",
60
+ }
61
+ },
62
+ "actions": [
63
+ {
64
+ "name": "set_value_by_distribution",
65
+ "kwargs": {}
66
+ }
67
+ ]
68
+
69
+ }
70
+
71
+ # hematocrit
72
+ - model: endoreg_db.case_template_rule
73
+ fields:
74
+ name: "patient_lab_sample-add_value-hematocrit-default"
75
+ rule_type: "create-object"
76
+ parent_model: "PatientLabSample"
77
+ parent_field: "sample"
78
+ target_model: "PatientLabValue"
79
+ extra_parameters: {
80
+ "create_method": {
81
+ "name": "create_lab_value_by_sample",
82
+ "kwargs": {
83
+ "lab_value_name": "hematocrit",
84
+ }
85
+ },
86
+ "actions": [
87
+ {
88
+ "name": "set_value_by_distribution",
89
+ "kwargs": {}
90
+ }
91
+ ]
92
+
93
+ }
94
+
95
+ # platelet count
96
+ - model: endoreg_db.case_template_rule
97
+ fields:
98
+ name: "patient_lab_sample-add_value-platelets-default"
99
+ rule_type: "create-object"
100
+ parent_model: "PatientLabSample"
101
+ parent_field: "sample"
102
+ target_model: "PatientLabValue"
103
+ extra_parameters: {
104
+ "create_method": {
105
+ "name": "create_lab_value_by_sample",
106
+ "kwargs": {
107
+ "lab_value_name": "platelets",
108
+ }
109
+ },
110
+ "actions": [
111
+ {
112
+ "name": "set_value_by_distribution",
113
+ "kwargs": {}
114
+ }
115
+ ]
116
+
117
+ }
118
+
119
+ # white cell count
120
+ - model: endoreg_db.case_template_rule
121
+ fields:
122
+ name: "patient_lab_sample-add_value-white_blood_cells-default"
123
+ rule_type: "create-object"
124
+ parent_model: "PatientLabSample"
125
+ parent_field: "sample"
126
+ target_model: "PatientLabValue"
127
+ extra_parameters: {
128
+ "create_method": {
129
+ "name": "create_lab_value_by_sample",
130
+ "kwargs": {
131
+ "lab_value_name": "white_blood_cells",
132
+ }
133
+ },
134
+ "actions": [
135
+ {
136
+ "name": "set_value_by_distribution",
137
+ "kwargs": {}
138
+ }
139
+ ]
140
+
141
+ }
142
+
143
+ # estimated glomerular filtration rate
144
+ - model: endoreg_db.case_template_rule
145
+ fields:
146
+ name: "patient_lab_sample-add_value-egfr-default"
147
+ rule_type: "create-object"
148
+ parent_model: "PatientLabSample"
149
+ parent_field: "sample"
150
+ target_model: "PatientLabValue"
151
+ extra_parameters: {
152
+ "create_method": {
153
+ "name": "create_lab_value_by_sample",
154
+ "kwargs": {
155
+ "lab_value_name": "estimated_glomerular_filtration_rate",
156
+ }
157
+ },
158
+ "actions": [
159
+ {
160
+ "name": "set_value_by_distribution",
161
+ "kwargs": {}
162
+ }
163
+ ]
164
+
165
+ }
166
+
167
+
@@ -1,8 +1,8 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "patient-set-age-screening_colo_population"
4
- rule_type: "set-field-by_distribution"
5
- parent_model: "Patient"
6
- target_field: "dob"
7
- value_type: "date"
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient-set-age-screening_colo_population"
4
+ rule_type: "set-field-by_distribution"
5
+ parent_model: "Patient"
6
+ target_field: "dob"
7
+ value_type: "date"
8
8
  date_value_distribution: "age-screening_colo_population"
@@ -1,9 +1,9 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "patient-set-gender-random"
4
- rule_type: "set-field-by_distribution"
5
- parent_model: "Patient"
6
- target_field: "gender"
7
- target_model: "Gender"
8
- value_type: "foreign_key"
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "patient-set-gender-random"
4
+ rule_type: "set-field-by_distribution"
5
+ parent_model: "Patient"
6
+ target_field: "gender"
7
+ target_model: "Gender"
8
+ value_type: "foreign_key"
9
9
  single_categorical_value_distribution: "gender-random"
@@ -1,23 +1,23 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "create-patient_lab_sample-default"
4
- rule_type: "create-object"
5
- target_model: "PatientLabSample"
6
- parent_field: "patient"
7
- chained_rules: [
8
- "patient_lab_sample-add_value-sodium-default",
9
- "patient_lab_sample-add_value-potassium-default",
10
- "patient_lab_sample-add_value-egfr-default",
11
- "patient_lab_sample-add_value-hemoglobin-default",
12
- "patient_lab_sample-add_value-hematocrit-default",
13
- "patient_lab_sample-add_value-platelets-default",
14
- "patient_lab_sample-add_value-white_blood_cells-default"
15
- ]
16
- extra_parameters: {
17
- "create_method": {
18
- "name": "create_by_patient",
19
- "kwargs": {
20
- "sample_type": "generic"
21
- }
22
- }
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_lab_sample-default"
4
+ rule_type: "create-object"
5
+ target_model: "PatientLabSample"
6
+ parent_field: "patient"
7
+ chained_rules: [
8
+ "patient_lab_sample-add_value-sodium-default",
9
+ "patient_lab_sample-add_value-potassium-default",
10
+ "patient_lab_sample-add_value-egfr-default",
11
+ "patient_lab_sample-add_value-hemoglobin-default",
12
+ "patient_lab_sample-add_value-hematocrit-default",
13
+ "patient_lab_sample-add_value-platelets-default",
14
+ "patient_lab_sample-add_value-white_blood_cells-default"
15
+ ]
16
+ extra_parameters: {
17
+ "create_method": {
18
+ "name": "create_by_patient",
19
+ "kwargs": {
20
+ "sample_type": "generic"
21
+ }
22
+ }
23
23
  }
@@ -1,19 +1,19 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
- rule_type: "create-object"
5
- target_model: "PatientMedication"
6
- parent_field: "patient"
7
-
8
- chained_rules: [
9
-
10
- ]
11
-
12
- extra_parameters: {
13
- "create_method": {
14
- "name": "create_by_patient_and_indication_type",
15
- "kwargs": {
16
- "indication_type": "thromboembolism-prevention-non_valvular_af"
17
- }
18
- }
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
+ rule_type: "create-object"
5
+ target_model: "PatientMedication"
6
+ parent_field: "patient"
7
+
8
+ chained_rules: [
9
+
10
+ ]
11
+
12
+ extra_parameters: {
13
+ "create_method": {
14
+ "name": "create_by_patient_and_indication_type",
15
+ "kwargs": {
16
+ "indication_type": "thromboembolism-prevention-non_valvular_af"
17
+ }
18
+ }
19
19
  }
@@ -1,19 +1,19 @@
1
- - model: endoreg_db.case_template_rule
2
- fields:
3
- name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
- rule_type: "create-object"
5
- target_model: "PatientMedicationSchedule"
6
- parent_field: "patient"
7
-
8
- chained_rules: [
9
-
10
- ]
11
-
12
- extra_parameters: {
13
- "create_method": {
14
- "name": "create_by_patient_and_indication_type",
15
- "kwargs": {
16
- "indication_type": "thromboembolism-prevention-non_valvular_af"
17
- }
18
- }
1
+ - model: endoreg_db.case_template_rule
2
+ fields:
3
+ name: "create-patient_medication_schedule-anticoagulation-non_valvular_af"
4
+ rule_type: "create-object"
5
+ target_model: "PatientMedicationSchedule"
6
+ parent_field: "patient"
7
+
8
+ chained_rules: [
9
+
10
+ ]
11
+
12
+ extra_parameters: {
13
+ "create_method": {
14
+ "name": "create_by_patient_and_indication_type",
15
+ "kwargs": {
16
+ "indication_type": "thromboembolism-prevention-non_valvular_af"
17
+ }
18
+ }
19
19
  }