endoreg-db 0.3.6__py3-none-any.whl → 0.3.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (351) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value/.init +0 -0
  14. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  15. endoreg_db/data/case_template/template/base.yaml +7 -7
  16. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  17. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  18. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  19. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  20. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  21. endoreg_db/data/center/data.yaml +59 -59
  22. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  23. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  24. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  25. endoreg_db/data/disease/hepatology.yaml +4 -4
  26. endoreg_db/data/disease/misc.yaml +5 -5
  27. endoreg_db/data/disease/renal.yaml +4 -4
  28. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  30. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  31. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  32. endoreg_db/data/distribution/date/patient.yaml +6 -6
  33. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  34. endoreg_db/data/distribution/numeric/.init +0 -0
  35. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  36. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  37. endoreg_db/data/endoscope_type/data.yaml +10 -10
  38. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  39. endoreg_db/data/event/cardiology.yaml +27 -27
  40. endoreg_db/data/event/neurology.yaml +13 -13
  41. endoreg_db/data/event/surgery.yaml +12 -12
  42. endoreg_db/data/event/thrombembolism.yaml +19 -19
  43. endoreg_db/data/examination/examinations/data.yaml +65 -65
  44. endoreg_db/data/examination/time/data.yaml +47 -47
  45. endoreg_db/data/examination/time-type/data.yaml +7 -7
  46. endoreg_db/data/examination/type/data.yaml +5 -5
  47. endoreg_db/data/gender/data.yaml +18 -18
  48. endoreg_db/data/information_source/data.yaml +30 -30
  49. endoreg_db/data/information_source/medication.yaml +5 -5
  50. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  51. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  52. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  53. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  54. endoreg_db/data/lab_value/hematology.yaml +169 -169
  55. endoreg_db/data/lab_value/hormones.yaml +53 -53
  56. endoreg_db/data/lab_value/lipids.yaml +44 -44
  57. endoreg_db/data/lab_value/misc.yaml +30 -30
  58. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  59. endoreg_db/data/label/label/data.yaml +62 -62
  60. endoreg_db/data/label/label-set/data.yaml +17 -17
  61. endoreg_db/data/label/label-type/data.yaml +6 -6
  62. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  63. endoreg_db/data/medication/tah.yaml +69 -69
  64. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  65. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  66. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  67. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  68. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  69. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  70. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  71. endoreg_db/data/model_type/data.yaml +6 -6
  72. endoreg_db/data/network_device/data.yaml +17 -0
  73. endoreg_db/data/network_device_type/data.yaml +8 -0
  74. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  75. endoreg_db/data/pdf_type/data.yaml +28 -28
  76. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  77. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  78. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  79. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  80. endoreg_db/data/profession/data.yaml +70 -70
  81. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  82. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  83. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  84. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  85. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  86. endoreg_db/data/unit/concentration.yaml +92 -92
  87. endoreg_db/data/unit/data.yaml +17 -17
  88. endoreg_db/data/unit/length.yaml +30 -30
  89. endoreg_db/data/unit/misc.yaml +19 -19
  90. endoreg_db/data/unit/rate.yaml +5 -5
  91. endoreg_db/data/unit/time.yaml +12 -12
  92. endoreg_db/data/unit/volume.yaml +35 -35
  93. endoreg_db/data/unit/weight.yaml +37 -37
  94. endoreg_db/data/waste/data.yaml +11 -11
  95. endoreg_db/forms/__init__.py +2 -2
  96. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  97. endoreg_db/forms/settings/__init__.py +8 -8
  98. endoreg_db/forms/unit.py +5 -5
  99. endoreg_db/management/commands/_load_model_template.py +40 -40
  100. endoreg_db/management/commands/delete_all.py +18 -18
  101. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  102. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  103. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  104. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  105. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  106. endoreg_db/management/commands/import_legacy_images.py +94 -94
  107. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  108. endoreg_db/management/commands/load_active_model_data.py +44 -44
  109. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  110. endoreg_db/management/commands/load_base_db_data.py +132 -128
  111. endoreg_db/management/commands/load_center_data.py +42 -42
  112. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  113. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  114. endoreg_db/management/commands/load_disease_data.py +39 -39
  115. endoreg_db/management/commands/load_distribution_data.py +65 -65
  116. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  117. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  118. endoreg_db/management/commands/load_event_data.py +40 -40
  119. endoreg_db/management/commands/load_examination_data.py +74 -74
  120. endoreg_db/management/commands/load_g_play_data.py +112 -112
  121. endoreg_db/management/commands/load_gender_data.py +43 -43
  122. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  123. endoreg_db/management/commands/load_information_source.py +44 -44
  124. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  125. endoreg_db/management/commands/load_label_data.py +66 -66
  126. endoreg_db/management/commands/load_medication_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  128. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  129. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  130. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  131. endoreg_db/management/commands/load_network_data.py +49 -0
  132. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  133. endoreg_db/management/commands/load_profession_data.py +43 -43
  134. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  135. endoreg_db/management/commands/load_unit_data.py +45 -45
  136. endoreg_db/management/commands/load_user_groups.py +28 -28
  137. endoreg_db/management/commands/register_ai_model.py +65 -65
  138. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  139. endoreg_db/migrations/0001_initial.py +582 -582
  140. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  141. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  142. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  143. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  144. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  145. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  146. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  147. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  148. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  149. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  150. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  151. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  152. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  153. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  154. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  155. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  156. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  157. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  158. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  159. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  160. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  161. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  162. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  163. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  164. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  165. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  166. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  167. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  168. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  169. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  170. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  171. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  172. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  173. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  174. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  175. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  176. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  177. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  178. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  179. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  180. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  181. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  182. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  183. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  184. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  185. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  186. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  187. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  188. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  189. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  190. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  191. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  192. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  193. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  194. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  195. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  196. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  197. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  198. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  199. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  200. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  201. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  202. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  203. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  204. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  205. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  206. endoreg_db/migrations/0068_networkdevicetype_networkdevicetypemanager_and_more.py +57 -0
  207. endoreg_db/models/__init__.py +75 -74
  208. endoreg_db/models/ai_model/__init__.py +3 -3
  209. endoreg_db/models/ai_model/active_model.py +9 -9
  210. endoreg_db/models/ai_model/model_meta.py +24 -24
  211. endoreg_db/models/ai_model/model_type.py +25 -25
  212. endoreg_db/models/ai_model/utils.py +8 -8
  213. endoreg_db/models/annotation/__init__.py +1 -1
  214. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  215. endoreg_db/models/annotation/image_classification.py +26 -26
  216. endoreg_db/models/case_template/__init__.py +5 -5
  217. endoreg_db/models/case_template/case_template.py +81 -81
  218. endoreg_db/models/case_template/case_template_rule.py +276 -276
  219. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  220. endoreg_db/models/case_template/case_template_type.py +27 -27
  221. endoreg_db/models/center/__init__.py +4 -4
  222. endoreg_db/models/center/center.py +24 -24
  223. endoreg_db/models/center/center_product.py +33 -33
  224. endoreg_db/models/center/center_resource.py +18 -18
  225. endoreg_db/models/center/center_waste.py +10 -10
  226. endoreg_db/models/data_file/__init__.py +5 -5
  227. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  228. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  229. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  230. endoreg_db/models/data_file/frame.py +45 -45
  231. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  232. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  233. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  234. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  235. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  236. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  237. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  238. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  239. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  240. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  241. endoreg_db/models/data_file/report_file.py +89 -89
  242. endoreg_db/models/data_file/video/__init__.py +6 -6
  243. endoreg_db/models/data_file/video/import_meta.py +25 -25
  244. endoreg_db/models/data_file/video/video.py +25 -25
  245. endoreg_db/models/data_file/video_segment.py +107 -107
  246. endoreg_db/models/disease.py +55 -55
  247. endoreg_db/models/emission/emission_factor.py +19 -19
  248. endoreg_db/models/event.py +21 -21
  249. endoreg_db/models/examination/__init__.py +3 -3
  250. endoreg_db/models/examination/examination.py +26 -26
  251. endoreg_db/models/examination/examination_time.py +27 -27
  252. endoreg_db/models/examination/examination_time_type.py +24 -24
  253. endoreg_db/models/examination/examination_type.py +18 -18
  254. endoreg_db/models/hardware/__init__.py +1 -1
  255. endoreg_db/models/hardware/endoscope.py +44 -44
  256. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  257. endoreg_db/models/information_source.py +29 -29
  258. endoreg_db/models/label/label.py +84 -84
  259. endoreg_db/models/laboratory/lab_value.py +102 -102
  260. endoreg_db/models/legacy_data/__init__.py +3 -3
  261. endoreg_db/models/legacy_data/image.py +34 -34
  262. endoreg_db/models/medication/medication.py +148 -148
  263. endoreg_db/models/network/__init__.py +2 -0
  264. endoreg_db/models/network/network_device.py +27 -0
  265. endoreg_db/models/network/network_device_type.py +23 -0
  266. endoreg_db/models/other/__init__.py +4 -4
  267. endoreg_db/models/other/distribution.py +215 -215
  268. endoreg_db/models/other/material.py +16 -16
  269. endoreg_db/models/other/resource.py +17 -17
  270. endoreg_db/models/other/transport_route.py +20 -20
  271. endoreg_db/models/other/waste.py +20 -20
  272. endoreg_db/models/patient_examination/__init__.py +35 -35
  273. endoreg_db/models/permissions/__init__.py +44 -44
  274. endoreg_db/models/persons/__init__.py +6 -6
  275. endoreg_db/models/persons/examiner/__init__.py +1 -1
  276. endoreg_db/models/persons/examiner/examiner.py +15 -15
  277. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  278. endoreg_db/models/persons/first_name.py +17 -17
  279. endoreg_db/models/persons/gender.py +22 -22
  280. endoreg_db/models/persons/last_name.py +19 -19
  281. endoreg_db/models/persons/patient/__init__.py +7 -7
  282. endoreg_db/models/persons/patient/case/case.py +30 -30
  283. endoreg_db/models/persons/patient/patient.py +216 -216
  284. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  285. endoreg_db/models/persons/patient/patient_event.py +22 -22
  286. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  287. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  288. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  289. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  290. endoreg_db/models/persons/person.py +31 -31
  291. endoreg_db/models/persons/portal_user_information.py +27 -27
  292. endoreg_db/models/prediction/__init__.py +1 -1
  293. endoreg_db/models/prediction/image_classification.py +37 -37
  294. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  295. endoreg_db/models/product/__init__.py +4 -4
  296. endoreg_db/models/product/product.py +97 -97
  297. endoreg_db/models/product/product_group.py +19 -19
  298. endoreg_db/models/product/product_material.py +24 -24
  299. endoreg_db/models/product/product_weight.py +26 -26
  300. endoreg_db/models/product/reference_product.py +99 -99
  301. endoreg_db/models/questionnaires/__init__.py +114 -114
  302. endoreg_db/models/quiz/__init__.py +1 -1
  303. endoreg_db/models/quiz/quiz_answer.py +41 -41
  304. endoreg_db/models/quiz/quiz_question.py +54 -54
  305. endoreg_db/models/report_reader/__init__.py +1 -1
  306. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  307. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  308. endoreg_db/models/rules/__init__.py +4 -4
  309. endoreg_db/models/rules/rule.py +23 -23
  310. endoreg_db/models/rules/rule_applicator.py +224 -224
  311. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  312. endoreg_db/models/rules/rule_type.py +21 -21
  313. endoreg_db/models/rules/ruleset.py +19 -19
  314. endoreg_db/models/unit.py +21 -21
  315. endoreg_db/queries/__init__.py +4 -4
  316. endoreg_db/queries/annotations/__init__.py +2 -2
  317. endoreg_db/queries/annotations/legacy.py +159 -159
  318. endoreg_db/queries/get/__init__.py +5 -5
  319. endoreg_db/queries/get/center.py +42 -42
  320. endoreg_db/queries/get/model.py +13 -13
  321. endoreg_db/queries/get/patient.py +14 -14
  322. endoreg_db/queries/get/patient_examination.py +20 -20
  323. endoreg_db/queries/get/report_file.py +33 -33
  324. endoreg_db/queries/get/video.py +31 -31
  325. endoreg_db/serializers/__init__.py +9 -9
  326. endoreg_db/serializers/ai_model.py +18 -18
  327. endoreg_db/serializers/annotation.py +17 -17
  328. endoreg_db/serializers/center.py +11 -11
  329. endoreg_db/serializers/examination.py +32 -32
  330. endoreg_db/serializers/frame.py +13 -13
  331. endoreg_db/serializers/hardware.py +20 -20
  332. endoreg_db/serializers/label.py +22 -22
  333. endoreg_db/serializers/patient.py +10 -10
  334. endoreg_db/serializers/prediction.py +15 -15
  335. endoreg_db/serializers/report_file.py +7 -7
  336. endoreg_db/serializers/video.py +27 -27
  337. endoreg_db/tests.py +3 -3
  338. endoreg_db/utils/cropping.py +28 -28
  339. endoreg_db/utils/dataloader.py +92 -92
  340. endoreg_db/utils/file_operations.py +30 -30
  341. endoreg_db/utils/hashs.py +33 -33
  342. endoreg_db/utils/legacy_ocr.py +201 -201
  343. endoreg_db/utils/ocr.py +197 -197
  344. endoreg_db/utils/uuid.py +4 -4
  345. endoreg_db/utils/video_metadata.py +87 -87
  346. endoreg_db/views.py +3 -3
  347. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/LICENSE +674 -674
  348. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/METADATA +3 -1
  349. endoreg_db-0.3.8.dist-info/RECORD +367 -0
  350. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/WHEEL +1 -1
  351. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import Event
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
-
6
- MODEL_0 = Event
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": [], # e.g. ["intervention_types"]
17
- "foreign_key_models": [] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import Event
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import EVENT_DATA_DIR as SOURCE_DIR
5
+
6
+ MODEL_0 = Event
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": [], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,75 +1,75 @@
1
- from django.conf import settings
2
- from django.core.management.base import BaseCommand
3
- from ...models import (
4
- Examination,
5
- ExaminationType, # Replace 'your_app_name' with the actual app name
6
- ExaminationTime,
7
- ExaminationTimeType,
8
- )
9
- import os
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import EXAMINATION_DATA_DIR
12
-
13
- SOURCE_DIR = EXAMINATION_DATA_DIR
14
-
15
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
- "ExaminationType",
17
- "Examination",
18
- "ExaminationTimeType",
19
- "ExaminationTime"
20
- ]
21
-
22
- IMPORT_METADATA = {
23
- # "": { # same as model name in "import models", e.g. "Intervention"
24
- # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
- # "model": None, # e.g. Intervention
26
- # "foreign_keys": [], # e.g. ["intervention_types"]
27
- # "foreign_key_models": [] # e.g. [InterventionType]
28
- # },
29
- "ExaminationType": {
30
- "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
- "model": ExaminationType, # e.g. Intervention
32
- "foreign_keys": [], # e.g. ["intervention_types"]
33
- "foreign_key_models": [] # e.g. [InterventionType]
34
- },
35
- "Examination": {
36
- "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
- "model": Examination, # e.g. Intervention
38
- "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
- "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
- },
41
- "ExaminationTimeType": {
42
- "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
- "model": ExaminationTimeType, # e.g. Intervention
44
- "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
- "foreign_key_models": [Examination] # e.g. [InterventionType]
46
- },
47
- "ExaminationTime": {
48
- "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
- "model": ExaminationTime, # e.g. Intervention
50
- "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
- "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
- },
53
- }
54
-
55
- class Command(BaseCommand):
56
- help = """Load all .yaml files in the data/intervention directory
57
- into the Intervention and InterventionType model"""
58
-
59
- def add_arguments(self, parser):
60
- parser.add_argument(
61
- '--verbose',
62
- action='store_true',
63
- help='Display verbose output',
64
- )
65
-
66
- def handle(self, *args, **options):
67
- verbose = options['verbose']
68
- for model_name in IMPORT_MODELS:
69
- _metadata = IMPORT_METADATA[model_name]
70
- load_model_data_from_yaml(
71
- self,
72
- model_name,
73
- _metadata,
74
- verbose
1
+ from django.conf import settings
2
+ from django.core.management.base import BaseCommand
3
+ from ...models import (
4
+ Examination,
5
+ ExaminationType, # Replace 'your_app_name' with the actual app name
6
+ ExaminationTime,
7
+ ExaminationTimeType,
8
+ )
9
+ import os
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import EXAMINATION_DATA_DIR
12
+
13
+ SOURCE_DIR = EXAMINATION_DATA_DIR
14
+
15
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
16
+ "ExaminationType",
17
+ "Examination",
18
+ "ExaminationTimeType",
19
+ "ExaminationTime"
20
+ ]
21
+
22
+ IMPORT_METADATA = {
23
+ # "": { # same as model name in "import models", e.g. "Intervention"
24
+ # "subdir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
25
+ # "model": None, # e.g. Intervention
26
+ # "foreign_keys": [], # e.g. ["intervention_types"]
27
+ # "foreign_key_models": [] # e.g. [InterventionType]
28
+ # },
29
+ "ExaminationType": {
30
+ "dir": os.path.join(SOURCE_DIR,"type"), # e.g. "interventions"
31
+ "model": ExaminationType, # e.g. Intervention
32
+ "foreign_keys": [], # e.g. ["intervention_types"]
33
+ "foreign_key_models": [] # e.g. [InterventionType]
34
+ },
35
+ "Examination": {
36
+ "dir": os.path.join(SOURCE_DIR,"examinations"), # e.g. "interventions"
37
+ "model": Examination, # e.g. Intervention
38
+ "foreign_keys": ["examination_types"], # e.g. ["intervention_types"]
39
+ "foreign_key_models": [ExaminationType] # e.g. [InterventionType]
40
+ },
41
+ "ExaminationTimeType": {
42
+ "dir": os.path.join(SOURCE_DIR,"time-type"), # e.g. "interventions"
43
+ "model": ExaminationTimeType, # e.g. Intervention
44
+ "foreign_keys": ["examinations"], # e.g. ["intervention_types"]
45
+ "foreign_key_models": [Examination] # e.g. [InterventionType]
46
+ },
47
+ "ExaminationTime": {
48
+ "dir": os.path.join(SOURCE_DIR,"time"), # e.g. "interventions"
49
+ "model": ExaminationTime, # e.g. Intervention
50
+ "foreign_keys": ["time_types"], # e.g. ["intervention_types"]
51
+ "foreign_key_models": [ExaminationTimeType] # e.g. [InterventionType]
52
+ },
53
+ }
54
+
55
+ class Command(BaseCommand):
56
+ help = """Load all .yaml files in the data/intervention directory
57
+ into the Intervention and InterventionType model"""
58
+
59
+ def add_arguments(self, parser):
60
+ parser.add_argument(
61
+ '--verbose',
62
+ action='store_true',
63
+ help='Display verbose output',
64
+ )
65
+
66
+ def handle(self, *args, **options):
67
+ verbose = options['verbose']
68
+ for model_name in IMPORT_MODELS:
69
+ _metadata = IMPORT_METADATA[model_name]
70
+ load_model_data_from_yaml(
71
+ self,
72
+ model_name,
73
+ _metadata,
74
+ verbose
75
75
  )
@@ -1,113 +1,113 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- CaseTemplateRuleType,
4
- CaseTemplateRuleValueType,
5
- CaseTemplateRuleValue,
6
- CaseTemplateRule,
7
- CaseTemplateType,
8
- CaseTemplate,
9
- SingleCategoricalValueDistribution,
10
- NumericValueDistribution,
11
- MultipleCategoricalValueDistribution,
12
- DateValueDistribution,
13
-
14
- QuizQuestionType,
15
- QuizAnswerType,
16
- QuizQuestion,
17
- QuizAnswer,
18
-
19
- # Other models for ForeignKeys
20
- Unit, Center
21
- )
22
- from collections import OrderedDict
23
-
24
- from ...utils import load_model_data_from_yaml
25
- from ...data import (
26
- CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
- CASE_TEMPLATE_RULE_DATA_DIR,
28
- CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
- CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
- CASE_TEMPLATE_TYPE_DATA_DIR,
31
- CASE_TEMPLATE_DATA_DIR,
32
- )
33
-
34
- IMPORT_METADATA = OrderedDict({
35
- CaseTemplateRuleType.__name__: {
36
- "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
- "model": CaseTemplateRuleType,
38
- "foreign_keys": [],
39
- "foreign_key_models": []
40
- },
41
- CaseTemplateRuleValueType.__name__: {
42
- "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
- "model": CaseTemplateRuleValueType,
44
- "foreign_keys": [],
45
- "foreign_key_models": []
46
- },
47
- CaseTemplateRuleValue.__name__: {
48
- "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
- "model": CaseTemplateRuleValue,
50
- "foreign_keys": ["value_type"],
51
- "foreign_key_models": [CaseTemplateRuleValueType]
52
- },
53
- CaseTemplateRule.__name__: {
54
- "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
- "model": CaseTemplateRule,
56
- "foreign_keys": [
57
- "rule_type",
58
- # "rule_values",
59
- "chained_rules",
60
- "value_type",
61
- "single_categorical_value_distribution",
62
- "numerical_value_distribution",
63
- "multiple_categorical_value_distribution",
64
- "date_value_distribution"
65
- ],
66
- "foreign_key_models": [
67
- CaseTemplateRuleType,
68
- # CaseTemplateRuleValue,
69
- CaseTemplateRule,
70
- CaseTemplateRuleValueType,
71
- SingleCategoricalValueDistribution,
72
- NumericValueDistribution,
73
- MultipleCategoricalValueDistribution,
74
- DateValueDistribution
75
-
76
- ]
77
- },
78
- CaseTemplateType.__name__: {
79
- "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
- "model": CaseTemplateType,
81
- "foreign_keys": [],
82
- "foreign_key_models": []
83
- },
84
- CaseTemplate.__name__: {
85
- "dir": CASE_TEMPLATE_DATA_DIR,
86
- "model": CaseTemplate,
87
- "foreign_keys": ["template_type", "rules"],
88
- "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
- },
90
-
91
- })
92
-
93
- class Command(BaseCommand):
94
- help = """Load all .yaml files in the data/intervention directory
95
- into the Intervention and InterventionType model"""
96
-
97
- def add_arguments(self, parser):
98
- parser.add_argument(
99
- '--verbose',
100
- action='store_true',
101
- help='Display verbose output',
102
- )
103
-
104
- def handle(self, *args, **options):
105
- verbose = options['verbose']
106
- for model_name in IMPORT_METADATA.keys():
107
- _metadata = IMPORT_METADATA[model_name]
108
- load_model_data_from_yaml(
109
- self,
110
- model_name,
111
- _metadata,
112
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ CaseTemplateRuleType,
4
+ CaseTemplateRuleValueType,
5
+ CaseTemplateRuleValue,
6
+ CaseTemplateRule,
7
+ CaseTemplateType,
8
+ CaseTemplate,
9
+ SingleCategoricalValueDistribution,
10
+ NumericValueDistribution,
11
+ MultipleCategoricalValueDistribution,
12
+ DateValueDistribution,
13
+
14
+ QuizQuestionType,
15
+ QuizAnswerType,
16
+ QuizQuestion,
17
+ QuizAnswer,
18
+
19
+ # Other models for ForeignKeys
20
+ Unit, Center
21
+ )
22
+ from collections import OrderedDict
23
+
24
+ from ...utils import load_model_data_from_yaml
25
+ from ...data import (
26
+ CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
27
+ CASE_TEMPLATE_RULE_DATA_DIR,
28
+ CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
29
+ CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
30
+ CASE_TEMPLATE_TYPE_DATA_DIR,
31
+ CASE_TEMPLATE_DATA_DIR,
32
+ )
33
+
34
+ IMPORT_METADATA = OrderedDict({
35
+ CaseTemplateRuleType.__name__: {
36
+ "dir": CASE_TEMPLATE_RULE_TYPE_DATA_DIR,
37
+ "model": CaseTemplateRuleType,
38
+ "foreign_keys": [],
39
+ "foreign_key_models": []
40
+ },
41
+ CaseTemplateRuleValueType.__name__: {
42
+ "dir": CASE_TEMPLATE_RULE_VALUE_TYPE_DATA_DIR,
43
+ "model": CaseTemplateRuleValueType,
44
+ "foreign_keys": [],
45
+ "foreign_key_models": []
46
+ },
47
+ CaseTemplateRuleValue.__name__: {
48
+ "dir": CASE_TEMPLATE_RULE_VALUE_DATA_DIR,
49
+ "model": CaseTemplateRuleValue,
50
+ "foreign_keys": ["value_type"],
51
+ "foreign_key_models": [CaseTemplateRuleValueType]
52
+ },
53
+ CaseTemplateRule.__name__: {
54
+ "dir": CASE_TEMPLATE_RULE_DATA_DIR,
55
+ "model": CaseTemplateRule,
56
+ "foreign_keys": [
57
+ "rule_type",
58
+ # "rule_values",
59
+ "chained_rules",
60
+ "value_type",
61
+ "single_categorical_value_distribution",
62
+ "numerical_value_distribution",
63
+ "multiple_categorical_value_distribution",
64
+ "date_value_distribution"
65
+ ],
66
+ "foreign_key_models": [
67
+ CaseTemplateRuleType,
68
+ # CaseTemplateRuleValue,
69
+ CaseTemplateRule,
70
+ CaseTemplateRuleValueType,
71
+ SingleCategoricalValueDistribution,
72
+ NumericValueDistribution,
73
+ MultipleCategoricalValueDistribution,
74
+ DateValueDistribution
75
+
76
+ ]
77
+ },
78
+ CaseTemplateType.__name__: {
79
+ "dir": CASE_TEMPLATE_TYPE_DATA_DIR,
80
+ "model": CaseTemplateType,
81
+ "foreign_keys": [],
82
+ "foreign_key_models": []
83
+ },
84
+ CaseTemplate.__name__: {
85
+ "dir": CASE_TEMPLATE_DATA_DIR,
86
+ "model": CaseTemplate,
87
+ "foreign_keys": ["template_type", "rules"],
88
+ "foreign_key_models": [CaseTemplateType, CaseTemplateRule]
89
+ },
90
+
91
+ })
92
+
93
+ class Command(BaseCommand):
94
+ help = """Load all .yaml files in the data/intervention directory
95
+ into the Intervention and InterventionType model"""
96
+
97
+ def add_arguments(self, parser):
98
+ parser.add_argument(
99
+ '--verbose',
100
+ action='store_true',
101
+ help='Display verbose output',
102
+ )
103
+
104
+ def handle(self, *args, **options):
105
+ verbose = options['verbose']
106
+ for model_name in IMPORT_METADATA.keys():
107
+ _metadata = IMPORT_METADATA[model_name]
108
+ load_model_data_from_yaml(
109
+ self,
110
+ model_name,
111
+ _metadata,
112
+ verbose
113
113
  )
@@ -1,44 +1,44 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- Gender,
4
-
5
- # Other models for ForeignKeys
6
- Unit, Center
7
- )
8
- from collections import OrderedDict
9
-
10
- from ...utils import load_model_data_from_yaml
11
- from ...data import (
12
- GENDER_DATA_DIR,
13
- )
14
-
15
- IMPORT_METADATA = OrderedDict({
16
- Gender.__name__: {
17
- "dir": GENDER_DATA_DIR,
18
- "model": Gender,
19
- "foreign_keys": [],
20
- "foreign_key_models": []
21
- },
22
- })
23
-
24
- class Command(BaseCommand):
25
- help = """Load all .yaml files in the data/intervention directory
26
- into the Intervention and InterventionType model"""
27
-
28
- def add_arguments(self, parser):
29
- parser.add_argument(
30
- '--verbose',
31
- action='store_true',
32
- help='Display verbose output',
33
- )
34
-
35
- def handle(self, *args, **options):
36
- verbose = options['verbose']
37
- for model_name in IMPORT_METADATA.keys():
38
- _metadata = IMPORT_METADATA[model_name]
39
- load_model_data_from_yaml(
40
- self,
41
- model_name,
42
- _metadata,
43
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ Gender,
4
+
5
+ # Other models for ForeignKeys
6
+ Unit, Center
7
+ )
8
+ from collections import OrderedDict
9
+
10
+ from ...utils import load_model_data_from_yaml
11
+ from ...data import (
12
+ GENDER_DATA_DIR,
13
+ )
14
+
15
+ IMPORT_METADATA = OrderedDict({
16
+ Gender.__name__: {
17
+ "dir": GENDER_DATA_DIR,
18
+ "model": Gender,
19
+ "foreign_keys": [],
20
+ "foreign_key_models": []
21
+ },
22
+ })
23
+
24
+ class Command(BaseCommand):
25
+ help = """Load all .yaml files in the data/intervention directory
26
+ into the Intervention and InterventionType model"""
27
+
28
+ def add_arguments(self, parser):
29
+ parser.add_argument(
30
+ '--verbose',
31
+ action='store_true',
32
+ help='Display verbose output',
33
+ )
34
+
35
+ def handle(self, *args, **options):
36
+ verbose = options['verbose']
37
+ for model_name in IMPORT_METADATA.keys():
38
+ _metadata = IMPORT_METADATA[model_name]
39
+ load_model_data_from_yaml(
40
+ self,
41
+ model_name,
42
+ _metadata,
43
+ verbose
44
44
  )