endoreg-db 0.3.6__py3-none-any.whl → 0.3.8__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (351) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +67 -64
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -167
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +7 -7
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +8 -8
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +22 -22
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +18 -18
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +18 -18
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +16 -16
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -35
  13. endoreg_db/data/case_template/rule_value/.init +0 -0
  14. endoreg_db/data/case_template/rule_value_type/base_types.yaml +58 -58
  15. endoreg_db/data/case_template/template/base.yaml +7 -7
  16. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +2 -2
  17. endoreg_db/data/case_template/tmp/_rule_value +13 -13
  18. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -21
  19. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +9 -9
  20. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +6 -6
  21. endoreg_db/data/center/data.yaml +59 -59
  22. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -144
  23. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -48
  24. endoreg_db/data/disease/cardiovascular.yaml +37 -37
  25. endoreg_db/data/disease/hepatology.yaml +4 -4
  26. endoreg_db/data/disease/misc.yaml +5 -5
  27. endoreg_db/data/disease/renal.yaml +4 -4
  28. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +5 -5
  29. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +5 -5
  30. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +40 -40
  31. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +19 -19
  32. endoreg_db/data/distribution/date/patient.yaml +6 -6
  33. endoreg_db/data/distribution/multiple_categorical/.init +0 -0
  34. endoreg_db/data/distribution/numeric/.init +0 -0
  35. endoreg_db/data/distribution/single_categorical/patient.yaml +6 -6
  36. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -132
  37. endoreg_db/data/endoscope_type/data.yaml +10 -10
  38. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  39. endoreg_db/data/event/cardiology.yaml +27 -27
  40. endoreg_db/data/event/neurology.yaml +13 -13
  41. endoreg_db/data/event/surgery.yaml +12 -12
  42. endoreg_db/data/event/thrombembolism.yaml +19 -19
  43. endoreg_db/data/examination/examinations/data.yaml +65 -65
  44. endoreg_db/data/examination/time/data.yaml +47 -47
  45. endoreg_db/data/examination/time-type/data.yaml +7 -7
  46. endoreg_db/data/examination/type/data.yaml +5 -5
  47. endoreg_db/data/gender/data.yaml +18 -18
  48. endoreg_db/data/information_source/data.yaml +30 -30
  49. endoreg_db/data/information_source/medication.yaml +5 -5
  50. endoreg_db/data/lab_value/cardiac_enzymes.yaml +30 -30
  51. endoreg_db/data/lab_value/coagulation.yaml +48 -48
  52. endoreg_db/data/lab_value/electrolytes.yaml +189 -189
  53. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -121
  54. endoreg_db/data/lab_value/hematology.yaml +169 -169
  55. endoreg_db/data/lab_value/hormones.yaml +53 -53
  56. endoreg_db/data/lab_value/lipids.yaml +44 -44
  57. endoreg_db/data/lab_value/misc.yaml +30 -30
  58. endoreg_db/data/lab_value/renal_function.yaml +10 -10
  59. endoreg_db/data/label/label/data.yaml +62 -62
  60. endoreg_db/data/label/label-set/data.yaml +17 -17
  61. endoreg_db/data/label/label-type/data.yaml +6 -6
  62. endoreg_db/data/medication/anticoagulation.yaml +64 -64
  63. endoreg_db/data/medication/tah.yaml +69 -69
  64. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -120
  65. endoreg_db/data/medication_indication_type/data.yaml +10 -10
  66. endoreg_db/data/medication_indication_type/thrombembolism.yaml +40 -40
  67. endoreg_db/data/medication_intake_time/base.yaml +30 -30
  68. endoreg_db/data/medication_schedule/apixaban.yaml +94 -94
  69. endoreg_db/data/medication_schedule/ass.yaml +12 -12
  70. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -26
  71. endoreg_db/data/model_type/data.yaml +6 -6
  72. endoreg_db/data/network_device/data.yaml +17 -0
  73. endoreg_db/data/network_device_type/data.yaml +8 -0
  74. endoreg_db/data/patient_lab_sample_type/generic.yaml +5 -5
  75. endoreg_db/data/pdf_type/data.yaml +28 -28
  76. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -66
  77. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -33
  78. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -308
  79. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -88
  80. endoreg_db/data/profession/data.yaml +70 -70
  81. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -55
  82. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  83. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  84. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -15
  85. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -12
  86. endoreg_db/data/unit/concentration.yaml +92 -92
  87. endoreg_db/data/unit/data.yaml +17 -17
  88. endoreg_db/data/unit/length.yaml +30 -30
  89. endoreg_db/data/unit/misc.yaml +19 -19
  90. endoreg_db/data/unit/rate.yaml +5 -5
  91. endoreg_db/data/unit/time.yaml +12 -12
  92. endoreg_db/data/unit/volume.yaml +35 -35
  93. endoreg_db/data/unit/weight.yaml +37 -37
  94. endoreg_db/data/waste/data.yaml +11 -11
  95. endoreg_db/forms/__init__.py +2 -2
  96. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  97. endoreg_db/forms/settings/__init__.py +8 -8
  98. endoreg_db/forms/unit.py +5 -5
  99. endoreg_db/management/commands/_load_model_template.py +40 -40
  100. endoreg_db/management/commands/delete_all.py +18 -18
  101. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  102. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  103. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  104. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  105. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  106. endoreg_db/management/commands/import_legacy_images.py +94 -94
  107. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  108. endoreg_db/management/commands/load_active_model_data.py +44 -44
  109. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  110. endoreg_db/management/commands/load_base_db_data.py +132 -128
  111. endoreg_db/management/commands/load_center_data.py +42 -42
  112. endoreg_db/management/commands/load_disease_classification_choices_data.py +40 -40
  113. endoreg_db/management/commands/load_disease_classification_data.py +40 -40
  114. endoreg_db/management/commands/load_disease_data.py +39 -39
  115. endoreg_db/management/commands/load_distribution_data.py +65 -65
  116. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  117. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  118. endoreg_db/management/commands/load_event_data.py +40 -40
  119. endoreg_db/management/commands/load_examination_data.py +74 -74
  120. endoreg_db/management/commands/load_g_play_data.py +112 -112
  121. endoreg_db/management/commands/load_gender_data.py +43 -43
  122. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +132 -132
  123. endoreg_db/management/commands/load_information_source.py +44 -44
  124. endoreg_db/management/commands/load_lab_value_data.py +49 -49
  125. endoreg_db/management/commands/load_label_data.py +66 -66
  126. endoreg_db/management/commands/load_medication_data.py +40 -40
  127. endoreg_db/management/commands/load_medication_indication_data.py +62 -62
  128. endoreg_db/management/commands/load_medication_indication_type_data.py +40 -40
  129. endoreg_db/management/commands/load_medication_intake_time_data.py +40 -40
  130. endoreg_db/management/commands/load_medication_schedule_data.py +54 -54
  131. endoreg_db/management/commands/load_network_data.py +49 -0
  132. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  133. endoreg_db/management/commands/load_profession_data.py +43 -43
  134. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  135. endoreg_db/management/commands/load_unit_data.py +45 -45
  136. endoreg_db/management/commands/load_user_groups.py +28 -28
  137. endoreg_db/management/commands/register_ai_model.py +65 -65
  138. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  139. endoreg_db/migrations/0001_initial.py +582 -582
  140. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  141. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  142. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  143. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  144. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  145. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  146. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  147. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  148. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  149. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  150. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  151. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  152. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  153. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  154. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  155. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  156. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  157. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  158. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  159. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  160. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  161. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  162. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  163. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -42
  164. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -166
  165. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -38
  166. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -18
  167. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -75
  168. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -101
  169. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -38
  170. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -18
  171. endoreg_db/migrations/0033_medicationindication_sources.py +18 -18
  172. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -20
  173. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -18
  174. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -20
  175. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -18
  176. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -164
  177. endoreg_db/migrations/0039_referenceproduct_name.py +19 -19
  178. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -50
  179. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -40
  180. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -74
  181. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -23
  182. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -23
  183. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -19
  184. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -18
  185. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -18
  186. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -22
  187. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -17
  188. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -18
  189. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -27
  190. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -18
  191. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -38
  192. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -69
  193. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -59
  194. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -32
  195. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -72
  196. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -28
  197. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -18
  198. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -44
  199. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -24
  200. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -18
  201. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -18
  202. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -23
  203. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -58
  204. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -29
  205. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -19
  206. endoreg_db/migrations/0068_networkdevicetype_networkdevicetypemanager_and_more.py +57 -0
  207. endoreg_db/models/__init__.py +75 -74
  208. endoreg_db/models/ai_model/__init__.py +3 -3
  209. endoreg_db/models/ai_model/active_model.py +9 -9
  210. endoreg_db/models/ai_model/model_meta.py +24 -24
  211. endoreg_db/models/ai_model/model_type.py +25 -25
  212. endoreg_db/models/ai_model/utils.py +8 -8
  213. endoreg_db/models/annotation/__init__.py +1 -1
  214. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  215. endoreg_db/models/annotation/image_classification.py +26 -26
  216. endoreg_db/models/case_template/__init__.py +5 -5
  217. endoreg_db/models/case_template/case_template.py +81 -81
  218. endoreg_db/models/case_template/case_template_rule.py +276 -276
  219. endoreg_db/models/case_template/case_template_rule_value.py +73 -73
  220. endoreg_db/models/case_template/case_template_type.py +27 -27
  221. endoreg_db/models/center/__init__.py +4 -4
  222. endoreg_db/models/center/center.py +24 -24
  223. endoreg_db/models/center/center_product.py +33 -33
  224. endoreg_db/models/center/center_resource.py +18 -18
  225. endoreg_db/models/center/center_waste.py +10 -10
  226. endoreg_db/models/data_file/__init__.py +5 -5
  227. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  228. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  229. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  230. endoreg_db/models/data_file/frame.py +45 -45
  231. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  232. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  233. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  234. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  235. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -188
  236. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  237. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  238. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  239. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  240. endoreg_db/models/data_file/metadata/video_meta.py +132 -132
  241. endoreg_db/models/data_file/report_file.py +89 -89
  242. endoreg_db/models/data_file/video/__init__.py +6 -6
  243. endoreg_db/models/data_file/video/import_meta.py +25 -25
  244. endoreg_db/models/data_file/video/video.py +25 -25
  245. endoreg_db/models/data_file/video_segment.py +107 -107
  246. endoreg_db/models/disease.py +55 -55
  247. endoreg_db/models/emission/emission_factor.py +19 -19
  248. endoreg_db/models/event.py +21 -21
  249. endoreg_db/models/examination/__init__.py +3 -3
  250. endoreg_db/models/examination/examination.py +26 -26
  251. endoreg_db/models/examination/examination_time.py +27 -27
  252. endoreg_db/models/examination/examination_time_type.py +24 -24
  253. endoreg_db/models/examination/examination_type.py +18 -18
  254. endoreg_db/models/hardware/__init__.py +1 -1
  255. endoreg_db/models/hardware/endoscope.py +44 -44
  256. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  257. endoreg_db/models/information_source.py +29 -29
  258. endoreg_db/models/label/label.py +84 -84
  259. endoreg_db/models/laboratory/lab_value.py +102 -102
  260. endoreg_db/models/legacy_data/__init__.py +3 -3
  261. endoreg_db/models/legacy_data/image.py +34 -34
  262. endoreg_db/models/medication/medication.py +148 -148
  263. endoreg_db/models/network/__init__.py +2 -0
  264. endoreg_db/models/network/network_device.py +27 -0
  265. endoreg_db/models/network/network_device_type.py +23 -0
  266. endoreg_db/models/other/__init__.py +4 -4
  267. endoreg_db/models/other/distribution.py +215 -215
  268. endoreg_db/models/other/material.py +16 -16
  269. endoreg_db/models/other/resource.py +17 -17
  270. endoreg_db/models/other/transport_route.py +20 -20
  271. endoreg_db/models/other/waste.py +20 -20
  272. endoreg_db/models/patient_examination/__init__.py +35 -35
  273. endoreg_db/models/permissions/__init__.py +44 -44
  274. endoreg_db/models/persons/__init__.py +6 -6
  275. endoreg_db/models/persons/examiner/__init__.py +1 -1
  276. endoreg_db/models/persons/examiner/examiner.py +15 -15
  277. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  278. endoreg_db/models/persons/first_name.py +17 -17
  279. endoreg_db/models/persons/gender.py +22 -22
  280. endoreg_db/models/persons/last_name.py +19 -19
  281. endoreg_db/models/persons/patient/__init__.py +7 -7
  282. endoreg_db/models/persons/patient/case/case.py +30 -30
  283. endoreg_db/models/persons/patient/patient.py +216 -216
  284. endoreg_db/models/persons/patient/patient_disease.py +16 -16
  285. endoreg_db/models/persons/patient/patient_event.py +22 -22
  286. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -106
  287. endoreg_db/models/persons/patient/patient_lab_value.py +176 -176
  288. endoreg_db/models/persons/patient/patient_medication.py +43 -43
  289. endoreg_db/models/persons/patient/patient_medication_schedule.py +27 -27
  290. endoreg_db/models/persons/person.py +31 -31
  291. endoreg_db/models/persons/portal_user_information.py +27 -27
  292. endoreg_db/models/prediction/__init__.py +1 -1
  293. endoreg_db/models/prediction/image_classification.py +37 -37
  294. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  295. endoreg_db/models/product/__init__.py +4 -4
  296. endoreg_db/models/product/product.py +97 -97
  297. endoreg_db/models/product/product_group.py +19 -19
  298. endoreg_db/models/product/product_material.py +24 -24
  299. endoreg_db/models/product/product_weight.py +26 -26
  300. endoreg_db/models/product/reference_product.py +99 -99
  301. endoreg_db/models/questionnaires/__init__.py +114 -114
  302. endoreg_db/models/quiz/__init__.py +1 -1
  303. endoreg_db/models/quiz/quiz_answer.py +41 -41
  304. endoreg_db/models/quiz/quiz_question.py +54 -54
  305. endoreg_db/models/report_reader/__init__.py +1 -1
  306. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  307. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  308. endoreg_db/models/rules/__init__.py +4 -4
  309. endoreg_db/models/rules/rule.py +23 -23
  310. endoreg_db/models/rules/rule_applicator.py +224 -224
  311. endoreg_db/models/rules/rule_attribute_dtype.py +18 -18
  312. endoreg_db/models/rules/rule_type.py +21 -21
  313. endoreg_db/models/rules/ruleset.py +19 -19
  314. endoreg_db/models/unit.py +21 -21
  315. endoreg_db/queries/__init__.py +4 -4
  316. endoreg_db/queries/annotations/__init__.py +2 -2
  317. endoreg_db/queries/annotations/legacy.py +159 -159
  318. endoreg_db/queries/get/__init__.py +5 -5
  319. endoreg_db/queries/get/center.py +42 -42
  320. endoreg_db/queries/get/model.py +13 -13
  321. endoreg_db/queries/get/patient.py +14 -14
  322. endoreg_db/queries/get/patient_examination.py +20 -20
  323. endoreg_db/queries/get/report_file.py +33 -33
  324. endoreg_db/queries/get/video.py +31 -31
  325. endoreg_db/serializers/__init__.py +9 -9
  326. endoreg_db/serializers/ai_model.py +18 -18
  327. endoreg_db/serializers/annotation.py +17 -17
  328. endoreg_db/serializers/center.py +11 -11
  329. endoreg_db/serializers/examination.py +32 -32
  330. endoreg_db/serializers/frame.py +13 -13
  331. endoreg_db/serializers/hardware.py +20 -20
  332. endoreg_db/serializers/label.py +22 -22
  333. endoreg_db/serializers/patient.py +10 -10
  334. endoreg_db/serializers/prediction.py +15 -15
  335. endoreg_db/serializers/report_file.py +7 -7
  336. endoreg_db/serializers/video.py +27 -27
  337. endoreg_db/tests.py +3 -3
  338. endoreg_db/utils/cropping.py +28 -28
  339. endoreg_db/utils/dataloader.py +92 -92
  340. endoreg_db/utils/file_operations.py +30 -30
  341. endoreg_db/utils/hashs.py +33 -33
  342. endoreg_db/utils/legacy_ocr.py +201 -201
  343. endoreg_db/utils/ocr.py +197 -197
  344. endoreg_db/utils/uuid.py +4 -4
  345. endoreg_db/utils/video_metadata.py +87 -87
  346. endoreg_db/views.py +3 -3
  347. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/LICENSE +674 -674
  348. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/METADATA +3 -1
  349. endoreg_db-0.3.8.dist-info/RECORD +367 -0
  350. {endoreg_db-0.3.6.dist-info → endoreg_db-0.3.8.dist-info}/WHEEL +1 -1
  351. endoreg_db-0.3.6.dist-info/RECORD +0 -357
@@ -1,43 +1,43 @@
1
- from django.core.management.base import BaseCommand
2
- from ...utils import load_model_data_from_yaml
3
- from ...models import Center, FirstName, LastName
4
- from ...data import CENTER_DATA_DIR
5
-
6
- SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
7
-
8
- MODEL_0 = Center
9
-
10
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
11
- MODEL_0.__name__,
12
- ]
13
-
14
- IMPORT_METADATA = {
15
- MODEL_0.__name__: {
16
- "dir": SOURCE_DIR, # e.g. "interventions"
17
- "model": MODEL_0, # e.g. Intervention
18
- "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
19
- "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
20
- }
21
- }
22
-
23
- class Command(BaseCommand):
24
- help = """Load all .yaml files in the data/intervention directory
25
- into the Intervention and InterventionType model"""
26
-
27
- def add_arguments(self, parser):
28
- parser.add_argument(
29
- '--verbose',
30
- action='store_true',
31
- help='Display verbose output',
32
- )
33
-
34
- def handle(self, *args, **options):
35
- verbose = options['verbose']
36
- for model_name in IMPORT_MODELS:
37
- _metadata = IMPORT_METADATA[model_name]
38
- load_model_data_from_yaml(
39
- self,
40
- model_name,
41
- _metadata,
42
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from ...utils import load_model_data_from_yaml
3
+ from ...models import Center, FirstName, LastName
4
+ from ...data import CENTER_DATA_DIR
5
+
6
+ SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
7
+
8
+ MODEL_0 = Center
9
+
10
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
11
+ MODEL_0.__name__,
12
+ ]
13
+
14
+ IMPORT_METADATA = {
15
+ MODEL_0.__name__: {
16
+ "dir": SOURCE_DIR, # e.g. "interventions"
17
+ "model": MODEL_0, # e.g. Intervention
18
+ "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
19
+ "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
20
+ }
21
+ }
22
+
23
+ class Command(BaseCommand):
24
+ help = """Load all .yaml files in the data/intervention directory
25
+ into the Intervention and InterventionType model"""
26
+
27
+ def add_arguments(self, parser):
28
+ parser.add_argument(
29
+ '--verbose',
30
+ action='store_true',
31
+ help='Display verbose output',
32
+ )
33
+
34
+ def handle(self, *args, **options):
35
+ verbose = options['verbose']
36
+ for model_name in IMPORT_MODELS:
37
+ _metadata = IMPORT_METADATA[model_name]
38
+ load_model_data_from_yaml(
39
+ self,
40
+ model_name,
41
+ _metadata,
42
+ verbose
43
43
  )
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
5
-
6
- from endoreg_db.models import DiseaseClassification
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
17
- "foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
5
+
6
+ from endoreg_db.models import DiseaseClassification
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,41 +1,41 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import DiseaseClassification as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
5
-
6
- from endoreg_db.models import Disease
7
-
8
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
- MODEL_0.__name__,
10
- ]
11
-
12
- IMPORT_METADATA = {
13
- MODEL_0.__name__: {
14
- "dir": SOURCE_DIR, # e.g. "interventions"
15
- "model": MODEL_0, # e.g. Intervention
16
- "foreign_keys": ["disease"], # e.g. ["intervention_types"]
17
- "foreign_key_models": [Disease] # e.g. [InterventionType]
18
- }
19
- }
20
-
21
- class Command(BaseCommand):
22
- help = """Load all .yaml files in the data/intervention directory
23
- into the Intervention and InterventionType model"""
24
-
25
- def add_arguments(self, parser):
26
- parser.add_argument(
27
- '--verbose',
28
- action='store_true',
29
- help='Display verbose output',
30
- )
31
-
32
- def handle(self, *args, **options):
33
- verbose = options['verbose']
34
- for model_name in IMPORT_MODELS:
35
- _metadata = IMPORT_METADATA[model_name]
36
- load_model_data_from_yaml(
37
- self,
38
- model_name,
39
- _metadata,
40
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import DiseaseClassification as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
5
+
6
+ from endoreg_db.models import Disease
7
+
8
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
9
+ MODEL_0.__name__,
10
+ ]
11
+
12
+ IMPORT_METADATA = {
13
+ MODEL_0.__name__: {
14
+ "dir": SOURCE_DIR, # e.g. "interventions"
15
+ "model": MODEL_0, # e.g. Intervention
16
+ "foreign_keys": ["disease"], # e.g. ["intervention_types"]
17
+ "foreign_key_models": [Disease] # e.g. [InterventionType]
18
+ }
19
+ }
20
+
21
+ class Command(BaseCommand):
22
+ help = """Load all .yaml files in the data/intervention directory
23
+ into the Intervention and InterventionType model"""
24
+
25
+ def add_arguments(self, parser):
26
+ parser.add_argument(
27
+ '--verbose',
28
+ action='store_true',
29
+ help='Display verbose output',
30
+ )
31
+
32
+ def handle(self, *args, **options):
33
+ verbose = options['verbose']
34
+ for model_name in IMPORT_MODELS:
35
+ _metadata = IMPORT_METADATA[model_name]
36
+ load_model_data_from_yaml(
37
+ self,
38
+ model_name,
39
+ _metadata,
40
+ verbose
41
41
  )
@@ -1,40 +1,40 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import Disease as MODEL_0
3
- from ...utils import load_model_data_from_yaml
4
- from ...data import DISEASE_DATA_DIR as SOURCE_DIR
5
-
6
-
7
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
8
- MODEL_0.__name__,
9
- ]
10
-
11
- IMPORT_METADATA = {
12
- MODEL_0.__name__: {
13
- "dir": SOURCE_DIR, # e.g. "interventions"
14
- "model": MODEL_0, # e.g. Intervention
15
- "foreign_keys": [], # e.g. ["intervention_types"]
16
- "foreign_key_models": [] # e.g. [InterventionType]
17
- }
18
- }
19
-
20
- class Command(BaseCommand):
21
- help = """Load all .yaml files in the data/intervention directory
22
- into the Intervention and InterventionType model"""
23
-
24
- def add_arguments(self, parser):
25
- parser.add_argument(
26
- '--verbose',
27
- action='store_true',
28
- help='Display verbose output',
29
- )
30
-
31
- def handle(self, *args, **options):
32
- verbose = options['verbose']
33
- for model_name in IMPORT_MODELS:
34
- _metadata = IMPORT_METADATA[model_name]
35
- load_model_data_from_yaml(
36
- self,
37
- model_name,
38
- _metadata,
39
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import Disease as MODEL_0
3
+ from ...utils import load_model_data_from_yaml
4
+ from ...data import DISEASE_DATA_DIR as SOURCE_DIR
5
+
6
+
7
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
8
+ MODEL_0.__name__,
9
+ ]
10
+
11
+ IMPORT_METADATA = {
12
+ MODEL_0.__name__: {
13
+ "dir": SOURCE_DIR, # e.g. "interventions"
14
+ "model": MODEL_0, # e.g. Intervention
15
+ "foreign_keys": [], # e.g. ["intervention_types"]
16
+ "foreign_key_models": [] # e.g. [InterventionType]
17
+ }
18
+ }
19
+
20
+ class Command(BaseCommand):
21
+ help = """Load all .yaml files in the data/intervention directory
22
+ into the Intervention and InterventionType model"""
23
+
24
+ def add_arguments(self, parser):
25
+ parser.add_argument(
26
+ '--verbose',
27
+ action='store_true',
28
+ help='Display verbose output',
29
+ )
30
+
31
+ def handle(self, *args, **options):
32
+ verbose = options['verbose']
33
+ for model_name in IMPORT_MODELS:
34
+ _metadata = IMPORT_METADATA[model_name]
35
+ load_model_data_from_yaml(
36
+ self,
37
+ model_name,
38
+ _metadata,
39
+ verbose
40
40
  )
@@ -1,66 +1,66 @@
1
- from django.core.management.base import BaseCommand
2
- from endoreg_db.models import (
3
- NumericValueDistribution,
4
- SingleCategoricalValueDistribution,
5
- MultipleCategoricalValueDistribution,
6
- DateValueDistribution
7
-
8
- )
9
- from collections import OrderedDict
10
-
11
- from ...utils import load_model_data_from_yaml
12
- from ...data import (
13
- DISTRIBUTION_NUMERIC_DATA_DIR,
14
- DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
15
- DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
16
- DISTRIBUTION_DATE_DATA_DIR,
17
- )
18
-
19
- IMPORT_METADATA = OrderedDict({
20
- NumericValueDistribution.__name__: {
21
- "dir": DISTRIBUTION_NUMERIC_DATA_DIR,
22
- "model": NumericValueDistribution,
23
- "foreign_keys": [],
24
- "foreign_key_models": []
25
- },
26
- SingleCategoricalValueDistribution.__name__: {
27
- "dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
28
- "model": SingleCategoricalValueDistribution,
29
- "foreign_keys": [],
30
- "foreign_key_models": []
31
- },
32
- MultipleCategoricalValueDistribution.__name__: {
33
- "dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
34
- "model": MultipleCategoricalValueDistribution,
35
- "foreign_keys": [],
36
- "foreign_key_models": []
37
- },
38
- DateValueDistribution.__name__: {
39
- "dir": DISTRIBUTION_DATE_DATA_DIR,
40
- "model": DateValueDistribution,
41
- "foreign_keys": [],
42
- "foreign_key_models": []
43
- },
44
- })
45
-
46
- class Command(BaseCommand):
47
- help = """Load all .yaml files in the data/intervention directory
48
- into the Intervention and InterventionType model"""
49
-
50
- def add_arguments(self, parser):
51
- parser.add_argument(
52
- '--verbose',
53
- action='store_true',
54
- help='Display verbose output',
55
- )
56
-
57
- def handle(self, *args, **options):
58
- verbose = options['verbose']
59
- for model_name in IMPORT_METADATA.keys():
60
- _metadata = IMPORT_METADATA[model_name]
61
- load_model_data_from_yaml(
62
- self,
63
- model_name,
64
- _metadata,
65
- verbose
1
+ from django.core.management.base import BaseCommand
2
+ from endoreg_db.models import (
3
+ NumericValueDistribution,
4
+ SingleCategoricalValueDistribution,
5
+ MultipleCategoricalValueDistribution,
6
+ DateValueDistribution
7
+
8
+ )
9
+ from collections import OrderedDict
10
+
11
+ from ...utils import load_model_data_from_yaml
12
+ from ...data import (
13
+ DISTRIBUTION_NUMERIC_DATA_DIR,
14
+ DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
15
+ DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
16
+ DISTRIBUTION_DATE_DATA_DIR,
17
+ )
18
+
19
+ IMPORT_METADATA = OrderedDict({
20
+ NumericValueDistribution.__name__: {
21
+ "dir": DISTRIBUTION_NUMERIC_DATA_DIR,
22
+ "model": NumericValueDistribution,
23
+ "foreign_keys": [],
24
+ "foreign_key_models": []
25
+ },
26
+ SingleCategoricalValueDistribution.__name__: {
27
+ "dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
28
+ "model": SingleCategoricalValueDistribution,
29
+ "foreign_keys": [],
30
+ "foreign_key_models": []
31
+ },
32
+ MultipleCategoricalValueDistribution.__name__: {
33
+ "dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
34
+ "model": MultipleCategoricalValueDistribution,
35
+ "foreign_keys": [],
36
+ "foreign_key_models": []
37
+ },
38
+ DateValueDistribution.__name__: {
39
+ "dir": DISTRIBUTION_DATE_DATA_DIR,
40
+ "model": DateValueDistribution,
41
+ "foreign_keys": [],
42
+ "foreign_key_models": []
43
+ },
44
+ })
45
+
46
+ class Command(BaseCommand):
47
+ help = """Load all .yaml files in the data/intervention directory
48
+ into the Intervention and InterventionType model"""
49
+
50
+ def add_arguments(self, parser):
51
+ parser.add_argument(
52
+ '--verbose',
53
+ action='store_true',
54
+ help='Display verbose output',
55
+ )
56
+
57
+ def handle(self, *args, **options):
58
+ verbose = options['verbose']
59
+ for model_name in IMPORT_METADATA.keys():
60
+ _metadata = IMPORT_METADATA[model_name]
61
+ load_model_data_from_yaml(
62
+ self,
63
+ model_name,
64
+ _metadata,
65
+ verbose
66
66
  )
@@ -1,45 +1,45 @@
1
- from django.conf import settings
2
- import os
3
- from django.core.management.base import BaseCommand
4
- from ...models import EndoscopeType
5
- from ...utils import load_model_data_from_yaml
6
- from ...data import ENDOSCOPE_TYPE_DATA_DIR
7
-
8
- SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
-
10
- MODEL_0 = EndoscopeType
11
-
12
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
- MODEL_0.__name__,
14
- ]
15
-
16
- IMPORT_METADATA = {
17
- MODEL_0.__name__: {
18
- "dir": SOURCE_DIR, # e.g. "interventions"
19
- "model": MODEL_0, # e.g. Intervention
20
- "foreign_keys": [], # e.g. ["intervention_types"]
21
- "foreign_key_models": [] # e.g. [InterventionType]
22
- }
23
- }
24
-
25
- class Command(BaseCommand):
26
- help = """Load all .yaml files in the data/intervention directory
27
- into the Intervention and InterventionType model"""
28
-
29
- def add_arguments(self, parser):
30
- parser.add_argument(
31
- '--verbose',
32
- action='store_true',
33
- help='Display verbose output',
34
- )
35
-
36
- def handle(self, *args, **options):
37
- verbose = options['verbose']
38
- for model_name in IMPORT_MODELS:
39
- _metadata = IMPORT_METADATA[model_name]
40
- load_model_data_from_yaml(
41
- self,
42
- model_name,
43
- _metadata,
44
- verbose
1
+ from django.conf import settings
2
+ import os
3
+ from django.core.management.base import BaseCommand
4
+ from ...models import EndoscopeType
5
+ from ...utils import load_model_data_from_yaml
6
+ from ...data import ENDOSCOPE_TYPE_DATA_DIR
7
+
8
+ SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
+
10
+ MODEL_0 = EndoscopeType
11
+
12
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
+ MODEL_0.__name__,
14
+ ]
15
+
16
+ IMPORT_METADATA = {
17
+ MODEL_0.__name__: {
18
+ "dir": SOURCE_DIR, # e.g. "interventions"
19
+ "model": MODEL_0, # e.g. Intervention
20
+ "foreign_keys": [], # e.g. ["intervention_types"]
21
+ "foreign_key_models": [] # e.g. [InterventionType]
22
+ }
23
+ }
24
+
25
+ class Command(BaseCommand):
26
+ help = """Load all .yaml files in the data/intervention directory
27
+ into the Intervention and InterventionType model"""
28
+
29
+ def add_arguments(self, parser):
30
+ parser.add_argument(
31
+ '--verbose',
32
+ action='store_true',
33
+ help='Display verbose output',
34
+ )
35
+
36
+ def handle(self, *args, **options):
37
+ verbose = options['verbose']
38
+ for model_name in IMPORT_MODELS:
39
+ _metadata = IMPORT_METADATA[model_name]
40
+ load_model_data_from_yaml(
41
+ self,
42
+ model_name,
43
+ _metadata,
44
+ verbose
45
45
  )
@@ -1,45 +1,45 @@
1
- from django.conf import settings
2
- import os
3
- from django.core.management.base import BaseCommand
4
- from ...models import EndoscopyProcessor
5
- from ...utils import load_model_data_from_yaml
6
- from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
7
-
8
- SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
-
10
- MODEL_0 = EndoscopyProcessor
11
-
12
- IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
- MODEL_0.__name__,
14
- ]
15
-
16
- IMPORT_METADATA = {
17
- MODEL_0.__name__: {
18
- "dir": SOURCE_DIR, # e.g. "interventions"
19
- "model": MODEL_0, # e.g. Intervention
20
- "foreign_keys": [], # e.g. ["intervention_types"]
21
- "foreign_key_models": [] # e.g. [InterventionType]
22
- }
23
- }
24
-
25
- class Command(BaseCommand):
26
- help = """Load all .yaml files in the data/intervention directory
27
- into the Intervention and InterventionType model"""
28
-
29
- def add_arguments(self, parser):
30
- parser.add_argument(
31
- '--verbose',
32
- action='store_true',
33
- help='Display verbose output',
34
- )
35
-
36
- def handle(self, *args, **options):
37
- verbose = options['verbose']
38
- for model_name in IMPORT_MODELS:
39
- _metadata = IMPORT_METADATA[model_name]
40
- load_model_data_from_yaml(
41
- self,
42
- model_name,
43
- _metadata,
44
- verbose
1
+ from django.conf import settings
2
+ import os
3
+ from django.core.management.base import BaseCommand
4
+ from ...models import EndoscopyProcessor
5
+ from ...utils import load_model_data_from_yaml
6
+ from ...data import ENDOSCOPY_PROCESSOR_DATA_DIR
7
+
8
+ SOURCE_DIR = ENDOSCOPY_PROCESSOR_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
9
+
10
+ MODEL_0 = EndoscopyProcessor
11
+
12
+ IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
13
+ MODEL_0.__name__,
14
+ ]
15
+
16
+ IMPORT_METADATA = {
17
+ MODEL_0.__name__: {
18
+ "dir": SOURCE_DIR, # e.g. "interventions"
19
+ "model": MODEL_0, # e.g. Intervention
20
+ "foreign_keys": [], # e.g. ["intervention_types"]
21
+ "foreign_key_models": [] # e.g. [InterventionType]
22
+ }
23
+ }
24
+
25
+ class Command(BaseCommand):
26
+ help = """Load all .yaml files in the data/intervention directory
27
+ into the Intervention and InterventionType model"""
28
+
29
+ def add_arguments(self, parser):
30
+ parser.add_argument(
31
+ '--verbose',
32
+ action='store_true',
33
+ help='Display verbose output',
34
+ )
35
+
36
+ def handle(self, *args, **options):
37
+ verbose = options['verbose']
38
+ for model_name in IMPORT_MODELS:
39
+ _metadata = IMPORT_METADATA[model_name]
40
+ load_model_data_from_yaml(
41
+ self,
42
+ model_name,
43
+ _metadata,
44
+ verbose
45
45
  )