endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

endoreg_db/management/commands/load_ai_model_data.py

@@ -1,45 +1,45 @@
-from django.conf import settings
-import os
-from django.core.management.base import BaseCommand
-from ...models import ModelType
-from ...utils import load_model_data_from_yaml
-from ...data import MODEL_TYPE_DATA_DIR
-
-SOURCE_DIR = MODEL_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
-
-MODEL_0 = ModelType
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
+from django.conf import settings
+import os
+from django.core.management.base import BaseCommand
+from ...models import ModelType
+from ...utils import load_model_data_from_yaml
+from ...data import MODEL_TYPE_DATA_DIR
+
+SOURCE_DIR = MODEL_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
+
+MODEL_0 = ModelType
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": [], # e.g. ["intervention_types"]
+        "foreign_key_models": [] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
             )

endoreg_db/management/commands/load_base_db_data.py

@@ -1,71 +1,128 @@
-from django.core.management import BaseCommand, call_command
-
-class Command(BaseCommand):
-    help = 'Run all data loading commands in the correct order'
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output for all commands',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-
-        self.stdout.write(self.style.SUCCESS("Populating base db models with data..."))
-
-        # Run the load_profession_data command
-        self.stdout.write(self.style.SUCCESS("Running load_profession_data..."))
-        call_command('load_profession_data', verbose=verbose)
-
-        # rund the load_user_groups command
-        self.stdout.write(self.style.SUCCESS("Running load_user_groups..."))
-        call_command('load_user_groups', verbose=verbose)
-
-        # run the load_report_reader_flag command
-        self.stdout.write(self.style.SUCCESS("Running load_report_reader_flag..."))
-        call_command('load_report_reader_flag', verbose=verbose)
-
-        # Run the load_pdf_type_data command
-        self.stdout.write(self.style.SUCCESS("Running load_pdf_type_data..."))
-        call_command('load_pdf_type_data', verbose=verbose)
-
-        # Run the load_endoscopy_processor_data command
-        self.stdout.write(self.style.SUCCESS("Running load_endoscopy_processor_data..."))
-        call_command('load_endoscopy_processor_data', verbose=verbose)
-
-        # Run the load_endoscope_type_data command
-        self.stdout.write(self.style.SUCCESS("Running load_endoscope_type_data..."))
-        call_command('load_endoscope_type_data', verbose=verbose)
-
-        # Run the load_unit_data command
-        self.stdout.write(self.style.SUCCESS("Running load_unit_data..."))
-        call_command('load_unit_data', verbose=verbose)
-
-        # Run the load_information_source command
-        self.stdout.write(self.style.SUCCESS("Running load_information_source..."))
-        call_command('load_information_source', verbose=verbose)
-
-        # Run the load_center_data command
-        self.stdout.write(self.style.SUCCESS("Running load_center_data..."))
-        call_command('load_center_data', verbose=verbose)
-
-        # Run the load_examination_data command
-        self.stdout.write(self.style.SUCCESS("Running load_examination_data..."))
-        call_command('load_examination_data', verbose=verbose)
-
-        # Run the load_label_data command
-        self.stdout.write(self.style.SUCCESS("Running load_label_data..."))
-        call_command('load_label_data', verbose=verbose)
-
-        # Run the load_ai_model_data command
-        self.stdout.write(self.style.SUCCESS("Running load_ai_model_data..."))
-        call_command('load_ai_model_data', verbose=verbose)
-
-        # Necessary? Migrate? FIXME
-        # # Run the load_active_model_data command
-        # self.stdout.write(self.style.SUCCESS("Running load_active_model_data..."))
-        # call_command('load_active_model_data', verbose=verbose)
-        
-        self.stdout.write(self.style.SUCCESS("All data loading commands executed successfully."))
+from django.core.management import BaseCommand, call_command
+
+class Command(BaseCommand):
+    help = 'Run all data loading commands in the correct order'
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output for all commands',
+        )
+
+    def handle(self, *args, **options):
+        # verbose = options['verbose']
+        verbose = True
+
+        self.stdout.write(self.style.SUCCESS("Populating base db models with data..."))
+
+        # Run the load_profession_data command
+        self.stdout.write(self.style.SUCCESS("Running load_profession_data..."))
+        call_command('load_profession_data', verbose=verbose)
+
+        # run the load_gender_data command
+        self.stdout.write(self.style.SUCCESS("Running load_gender_data..."))
+        call_command('load_gender_data', verbose=verbose)
+
+        # Run the load_disease data command
+        self.stdout.write(self.style.SUCCESS("Running load_disease_data..."))
+        call_command('load_disease_data', verbose=verbose)
+
+        # Run the load_disease_classification data command
+        self.stdout.write(self.style.SUCCESS("Running load_disease_classification_data..."))
+        call_command('load_disease_classification_data', verbose=verbose)
+
+        # Run the load_disease_classification_choices data command
+        self.stdout.write(self.style.SUCCESS("Running load_disease_classification_choices_data..."))
+        call_command('load_disease_classification_choices_data', verbose=verbose)
+
+        # rund the load_user_groups command
+        self.stdout.write(self.style.SUCCESS("Running load_user_groups..."))
+        call_command('load_user_groups', verbose=verbose)
+
+        # run the load_report_reader_flag command
+        self.stdout.write(self.style.SUCCESS("Running load_report_reader_flag..."))
+        call_command('load_report_reader_flag', verbose=verbose)
+
+        # Run the load_pdf_type_data command
+        self.stdout.write(self.style.SUCCESS("Running load_pdf_type_data..."))
+        call_command('load_pdf_type_data', verbose=verbose)
+
+        # Run the load_endoscopy_processor_data command
+        self.stdout.write(self.style.SUCCESS("Running load_endoscopy_processor_data..."))
+        call_command('load_endoscopy_processor_data', verbose=verbose)
+
+        # Run the load_endoscope_type_data command
+        self.stdout.write(self.style.SUCCESS("Running load_endoscope_type_data..."))
+        call_command('load_endoscope_type_data', verbose=verbose)
+
+        # Run the load_unit_data command
+        self.stdout.write(self.style.SUCCESS("Running load_unit_data..."))
+        call_command('load_unit_data', verbose=verbose)
+
+        # Run the load_lab_value_data command
+        self.stdout.write(self.style.SUCCESS("Running load_lab_value_data..."))
+        call_command("load_lab_value_data", verbose=verbose)
+
+        # Run the load_information_source command
+        self.stdout.write(self.style.SUCCESS("Running load_information_source..."))
+        call_command('load_information_source', verbose=verbose)
+
+        # Run the load_center_data command
+        self.stdout.write(self.style.SUCCESS("Running load_center_data..."))
+        call_command('load_center_data', verbose=verbose)
+
+        # Run the load_examination_data command
+        self.stdout.write(self.style.SUCCESS("Running load_examination_data..."))
+        call_command('load_examination_data', verbose=verbose)
+
+        # Run the load_label_data command
+        self.stdout.write(self.style.SUCCESS("Running load_label_data..."))
+        call_command('load_label_data', verbose=verbose)
+
+        # Run the load_ai_model_data command
+        self.stdout.write(self.style.SUCCESS("Running load_ai_model_data..."))
+        call_command('load_ai_model_data', verbose=verbose)
+
+        # Run the load_event_data command
+        self.stdout.write(self.style.SUCCESS("Running load_event_data..."))
+        call_command('load_event_data', verbose=verbose)
+
+        # run the load_medication_data command
+        self.stdout.write(self.style.SUCCESS("Running load_medication_data..."))
+        call_command('load_medication_data', verbose=verbose)
+
+        # Run the load_medication_indication_type_data command
+        self.stdout.write(self.style.SUCCESS("Running load_medication_indication_type_data..."))
+        call_command('load_medication_indication_type_data', verbose=verbose)
+
+        # Run the load_medication_intake_time_data command
+        self.stdout.write(self.style.SUCCESS("Running load_medication_intake_time_data..."))
+        call_command('load_medication_intake_time_data', verbose=verbose)
+
+        # Run the load_medication_schedule_data command
+        self.stdout.write(self.style.SUCCESS("Running load_medication_schedule_data..."))
+        call_command('load_medication_schedule_data', verbose=verbose)
+
+        # Run the load_medication_indication_data command
+        self.stdout.write(self.style.SUCCESS("Running load_medication_indication_data..."))
+        call_command('load_medication_indication_data', verbose=verbose)
+
+        # Run the load_green_endoscopy_wuerzburg_data command
+        self.stdout.write(self.style.SUCCESS("Running load_green_endoscopy_wuerzburg_data..."))
+        call_command('load_green_endoscopy_wuerzburg_data', verbose=verbose)
+
+        # Load G-Play Data
+        # run the load_distribution_data command
+        self.stdout.write(self.style.SUCCESS("Running load_distribution_data..."))
+        call_command('load_distribution_data', verbose=verbose)
+        # Run the load_g_play_data command
+        self.stdout.write(self.style.SUCCESS("Running load_g_play_data..."))
+        call_command('load_g_play_data', verbose=verbose)
+
+        # Necessary? Migrate? FIXME
+        # # Run the load_active_model_data command
+        # self.stdout.write(self.style.SUCCESS("Running load_active_model_data..."))
+        # call_command('load_active_model_data', verbose=verbose)
+        
+        self.stdout.write(self.style.SUCCESS("All data loading commands executed successfully."))

endoreg_db/management/commands/load_center_data.py

@@ -1,43 +1,43 @@
-from django.core.management.base import BaseCommand
-from ...utils import load_model_data_from_yaml
-from ...models import Center, FirstName, LastName
-from ...data import CENTER_DATA_DIR
-
-SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
-
-MODEL_0 = Center
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
-        "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
+from django.core.management.base import BaseCommand
+from ...utils import load_model_data_from_yaml
+from ...models import Center, FirstName, LastName
+from ...data import CENTER_DATA_DIR
+
+SOURCE_DIR = CENTER_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
+
+MODEL_0 = Center
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": ["first_names", "last_names"], # e.g. ["intervention_types"]
+        "foreign_key_models": [FirstName, LastName] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
             )

endoreg_db/management/commands/load_disease_classification_choices_data.py

@@ -0,0 +1,41 @@
+from django.core.management.base import BaseCommand
+from endoreg_db.models import DiseaseClassificationChoice as MODEL_0
+from ...utils import load_model_data_from_yaml
+from ...data import DISEASE_CLASSIFICATION_CHOICE_DATA_DIR as SOURCE_DIR
+
+from endoreg_db.models import DiseaseClassification
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": ["disease_classification"], # e.g. ["intervention_types"]
+        "foreign_key_models": [DiseaseClassification] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
+            )

endoreg_db/management/commands/load_disease_classification_data.py

@@ -0,0 +1,41 @@
+from django.core.management.base import BaseCommand
+from endoreg_db.models import DiseaseClassification as MODEL_0
+from ...utils import load_model_data_from_yaml
+from ...data import DISEASE_CLASSIFICATION_DATA_DIR as SOURCE_DIR
+
+from endoreg_db.models import Disease
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": ["disease"], # e.g. ["intervention_types"]
+        "foreign_key_models": [Disease] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
+            )

endoreg_db/management/commands/load_disease_data.py

@@ -0,0 +1,40 @@
+from django.core.management.base import BaseCommand
+from endoreg_db.models import Disease as MODEL_0
+from ...utils import load_model_data_from_yaml
+from ...data import DISEASE_DATA_DIR as SOURCE_DIR
+
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": [], # e.g. ["intervention_types"]
+        "foreign_key_models": [] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
+            )

endoreg_db/management/commands/load_distribution_data.py

@@ -0,0 +1,66 @@
+from django.core.management.base import BaseCommand
+from endoreg_db.models import (
+    NumericValueDistribution,
+    SingleCategoricalValueDistribution,
+    MultipleCategoricalValueDistribution,
+    DateValueDistribution
+
+)
+from collections import OrderedDict
+
+from ...utils import load_model_data_from_yaml
+from ...data import (
+    DISTRIBUTION_NUMERIC_DATA_DIR,
+    DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
+    DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
+    DISTRIBUTION_DATE_DATA_DIR,
+)
+
+IMPORT_METADATA = OrderedDict({
+    NumericValueDistribution.__name__: {
+        "dir": DISTRIBUTION_NUMERIC_DATA_DIR,
+        "model": NumericValueDistribution, 
+        "foreign_keys": [], 
+        "foreign_key_models": [] 
+    },
+    SingleCategoricalValueDistribution.__name__: {
+        "dir": DISTRIBUTION_SINGLE_CATEGORICAL_DATA_DIR,
+        "model": SingleCategoricalValueDistribution, 
+        "foreign_keys": [], 
+        "foreign_key_models": [] 
+    },
+    MultipleCategoricalValueDistribution.__name__: {
+        "dir": DISTRIBUTION_MULTIPLE_CATEGORICAL_DATA_DIR,
+        "model": MultipleCategoricalValueDistribution, 
+        "foreign_keys": [], 
+        "foreign_key_models": [] 
+    },
+    DateValueDistribution.__name__: {
+        "dir": DISTRIBUTION_DATE_DATA_DIR,
+        "model": DateValueDistribution, 
+        "foreign_keys": [], 
+        "foreign_key_models": [] 
+    },
+})
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_METADATA.keys():
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
+            )

endoreg_db/management/commands/load_endoscope_type_data.py

@@ -1,45 +1,45 @@
-from django.conf import settings
-import os
-from django.core.management.base import BaseCommand
-from ...models import EndoscopeType
-from ...utils import load_model_data_from_yaml
-from ...data import ENDOSCOPE_TYPE_DATA_DIR
-
-SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
-
-MODEL_0 = EndoscopeType
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-    MODEL_0.__name__,
-]
-
-IMPORT_METADATA = {
-    MODEL_0.__name__: {
-        "dir": SOURCE_DIR, # e.g. "interventions"
-        "model": MODEL_0, # e.g. Intervention
-        "foreign_keys": [], # e.g. ["intervention_types"]
-        "foreign_key_models": [] # e.g. [InterventionType]
-    }
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data_from_yaml(
-                self,
-                model_name,
-                _metadata,
-                verbose
+from django.conf import settings
+import os
+from django.core.management.base import BaseCommand
+from ...models import EndoscopeType
+from ...utils import load_model_data_from_yaml
+from ...data import ENDOSCOPE_TYPE_DATA_DIR
+
+SOURCE_DIR = ENDOSCOPE_TYPE_DATA_DIR # e.g. settings.DATA_DIR_INTERVENTION
+
+MODEL_0 = EndoscopeType
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+    MODEL_0.__name__,
+]
+
+IMPORT_METADATA = {
+    MODEL_0.__name__: {
+        "dir": SOURCE_DIR, # e.g. "interventions"
+        "model": MODEL_0, # e.g. Intervention
+        "foreign_keys": [], # e.g. ["intervention_types"]
+        "foreign_key_models": [] # e.g. [InterventionType]
+    }
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data_from_yaml(
+                self,
+                model_name,
+                _metadata,
+                verbose
             )