endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

endoreg_db/models/hardware/endoscope.py

@@ -1,44 +1,44 @@
-from django.db import models
-
-class EndoscopeManager(models.Manager):
-    def get_by_natural_key(self, name, sn):
-        return self.get(name=name, sn=sn)
-    
-class Endoscope(models.Model):
-    objects = EndoscopeManager()
-    
-    name = models.CharField(max_length=255)
-    sn = models.CharField(max_length=255)
-    
-    def natural_key(self):
-        return (self.name, self.sn)
-    
-    def __str__(self):
-        return self.name
-    
-    class Meta:
-        ordering = ['name']
-        verbose_name = 'Endoscope'
-        verbose_name_plural = 'Endoscopes'
-
-class EndoscopeTypeManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-    
-class EndoscopeType(models.Model):
-    objects = EndoscopeTypeManager()
-    
-    name = models.CharField(max_length=255)
-    name_de = models.CharField(max_length=255, blank=True, null=True)
-    name_en = models.CharField(max_length=255, blank=True, null=True)
-    
-    def natural_key(self):
-        return (self.name,)
-    
-    def __str__(self):
-        return self.name
-    
-    class Meta:
-        ordering = ['name']
-        verbose_name = 'Endoscope Type'
-        verbose_name_plural = 'Endoscope Types'
+from django.db import models
+
+class EndoscopeManager(models.Manager):
+    def get_by_natural_key(self, name, sn):
+        return self.get(name=name, sn=sn)
+    
+class Endoscope(models.Model):
+    objects = EndoscopeManager()
+    
+    name = models.CharField(max_length=255)
+    sn = models.CharField(max_length=255)
+    
+    def natural_key(self):
+        return (self.name, self.sn)
+    
+    def __str__(self):
+        return self.name
+    
+    class Meta:
+        ordering = ['name']
+        verbose_name = 'Endoscope'
+        verbose_name_plural = 'Endoscopes'
+
+class EndoscopeTypeManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+    
+class EndoscopeType(models.Model):
+    objects = EndoscopeTypeManager()
+    
+    name = models.CharField(max_length=255)
+    name_de = models.CharField(max_length=255, blank=True, null=True)
+    name_en = models.CharField(max_length=255, blank=True, null=True)
+    
+    def natural_key(self):
+        return (self.name,)
+    
+    def __str__(self):
+        return self.name
+    
+    class Meta:
+        ordering = ['name']
+        verbose_name = 'Endoscope Type'
+        verbose_name_plural = 'Endoscope Types'

endoreg_db/models/hardware/endoscopy_processor.py

@@ -1,143 +1,143 @@
-from django.db import models
-
-class EndoscopyProcessorManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-
-class EndoscopyProcessor(models.Model):
-    objects = EndoscopyProcessorManager()
-
-    name = models.CharField(max_length=255)
-    image_width = models.IntegerField()
-    image_height = models.IntegerField()
-    # image_fps = models.IntegerField()
-
-    # Roi for endoscope image
-    endoscope_image_x = models.IntegerField()
-    endoscope_image_y = models.IntegerField()
-    endoscope_image_width = models.IntegerField()
-    endoscope_image_height = models.IntegerField()
-
-    # Roi for examination date
-    examination_date_x = models.IntegerField()
-    examination_date_y = models.IntegerField()
-    examination_date_width = models.IntegerField()
-    examination_date_height = models.IntegerField()
-
-    # Roi for examination time
-    examination_time_x = models.IntegerField(blank=True, null=True)
-    examination_time_y = models.IntegerField(blank=True, null=True)
-    examination_time_width = models.IntegerField(blank=True, null=True)
-    examination_time_height = models.IntegerField(blank=True, null=True)
-
-    # Roi for patient first name
-    patient_first_name_x = models.IntegerField()
-    patient_first_name_y = models.IntegerField()
-    patient_first_name_width = models.IntegerField()
-    patient_first_name_height = models.IntegerField()
-
-    # Roi for patient name
-    patient_last_name_x = models.IntegerField()
-    patient_last_name_y = models.IntegerField()
-    patient_last_name_width = models.IntegerField()
-    patient_last_name_height = models.IntegerField()
-
-    # Roi for patient dob
-    patient_dob_x = models.IntegerField()
-    patient_dob_y = models.IntegerField()
-    patient_dob_width = models.IntegerField()
-    patient_dob_height = models.IntegerField()
-
-    # Roi for endoscope type
-    endoscope_type_x = models.IntegerField(blank=True, null=True)
-    endoscope_type_y = models.IntegerField(blank=True, null=True)
-    endoscope_type_width = models.IntegerField(blank=True, null=True)
-    endoscope_type_height = models.IntegerField(blank=True, null=True)
-
-    # Roi for endoscopy sn
-    endoscope_sn_x = models.IntegerField(blank=True, null=True)
-    endoscope_sn_y = models.IntegerField(blank=True, null=True)
-    endoscope_sn_width = models.IntegerField(blank=True, null=True)
-    endoscope_sn_height = models.IntegerField(blank=True, null=True)
-
-    def natural_key(self):
-        return (self.name,)
-    
-    def __str__(self):
-        return self.name
-    
-    def get_roi_endoscope_image(self):
-        return {
-            "x": self.endoscope_image_x,
-            "y": self.endoscope_image_y,
-            "width": self.endoscope_image_width,
-            "height": self.endoscope_image_height
-        }
-    
-    def get_roi_examination_date(self):
-        return {
-            "x": self.examination_date_x,
-            "y": self.examination_date_y,
-            "width": self.examination_date_width,
-            "height": self.examination_date_height
-        }
-    
-    def get_roi_examination_time(self):
-        return {
-            "x": self.examination_time_x,
-            "y": self.examination_time_y,
-            "width": self.examination_time_width,
-            "height": self.examination_time_height
-        }
-    
-    def get_roi_patient_last_name(self):
-        return {
-            "x": self.patient_last_name_x,
-            "y": self.patient_last_name_y,
-            "width": self.patient_last_name_width,
-            "height": self.patient_last_name_height
-        }
-    
-    def get_roi_patient_first_name(self):
-        return {
-            "x": self.patient_first_name_x,
-            "y": self.patient_first_name_y,
-            "width": self.patient_first_name_width,
-            "height": self.patient_first_name_height
-        }
-    
-    def get_roi_patient_dob(self):
-        return {
-            "x": self.patient_dob_x,
-            "y": self.patient_dob_y,
-            "width": self.patient_dob_width,
-            "height": self.patient_dob_height
-        }
-    
-    def get_roi_endoscope_type(self):
-        return {
-            "x": self.endoscope_type_x,
-            "y": self.endoscope_type_y,
-            "width": self.endoscope_type_width,
-            "height": self.endoscope_type_height
-        }
-    
-    def get_roi_endoscopy_sn(self):
-        return {
-            "x": self.endoscope_sn_x,
-            "y": self.endoscope_sn_y,
-            "width": self.endoscope_sn_width,
-            "height": self.endoscope_sn_height
-        }
-    
-    def get_rois(self):
-        return {
-            "endoscope_image": self.get_roi_endoscope_image(),
-            "examination_date": self.get_roi_examination_date(),
-            "examination_time": self.get_roi_examination_time(),
-            "patient_first_name": self.get_roi_patient_first_name(),
-            "patient_last_name": self.get_roi_patient_last_name(),
-            "patient_dob": self.get_roi_patient_dob(),
-            "endoscope_type": self.get_roi_endoscope_type(),
-            "endoscope_sn": self.get_roi_endoscopy_sn()
-        }
+from django.db import models
+
+class EndoscopyProcessorManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+
+class EndoscopyProcessor(models.Model):
+    objects = EndoscopyProcessorManager()
+
+    name = models.CharField(max_length=255)
+    image_width = models.IntegerField()
+    image_height = models.IntegerField()
+    # image_fps = models.IntegerField()
+
+    # Roi for endoscope image
+    endoscope_image_x = models.IntegerField()
+    endoscope_image_y = models.IntegerField()
+    endoscope_image_width = models.IntegerField()
+    endoscope_image_height = models.IntegerField()
+
+    # Roi for examination date
+    examination_date_x = models.IntegerField()
+    examination_date_y = models.IntegerField()
+    examination_date_width = models.IntegerField()
+    examination_date_height = models.IntegerField()
+
+    # Roi for examination time
+    examination_time_x = models.IntegerField(blank=True, null=True)
+    examination_time_y = models.IntegerField(blank=True, null=True)
+    examination_time_width = models.IntegerField(blank=True, null=True)
+    examination_time_height = models.IntegerField(blank=True, null=True)
+
+    # Roi for patient first name
+    patient_first_name_x = models.IntegerField()
+    patient_first_name_y = models.IntegerField()
+    patient_first_name_width = models.IntegerField()
+    patient_first_name_height = models.IntegerField()
+
+    # Roi for patient name
+    patient_last_name_x = models.IntegerField()
+    patient_last_name_y = models.IntegerField()
+    patient_last_name_width = models.IntegerField()
+    patient_last_name_height = models.IntegerField()
+
+    # Roi for patient dob
+    patient_dob_x = models.IntegerField()
+    patient_dob_y = models.IntegerField()
+    patient_dob_width = models.IntegerField()
+    patient_dob_height = models.IntegerField()
+
+    # Roi for endoscope type
+    endoscope_type_x = models.IntegerField(blank=True, null=True)
+    endoscope_type_y = models.IntegerField(blank=True, null=True)
+    endoscope_type_width = models.IntegerField(blank=True, null=True)
+    endoscope_type_height = models.IntegerField(blank=True, null=True)
+
+    # Roi for endoscopy sn
+    endoscope_sn_x = models.IntegerField(blank=True, null=True)
+    endoscope_sn_y = models.IntegerField(blank=True, null=True)
+    endoscope_sn_width = models.IntegerField(blank=True, null=True)
+    endoscope_sn_height = models.IntegerField(blank=True, null=True)
+
+    def natural_key(self):
+        return (self.name,)
+    
+    def __str__(self):
+        return self.name
+    
+    def get_roi_endoscope_image(self):
+        return {
+            "x": self.endoscope_image_x,
+            "y": self.endoscope_image_y,
+            "width": self.endoscope_image_width,
+            "height": self.endoscope_image_height
+        }
+    
+    def get_roi_examination_date(self):
+        return {
+            "x": self.examination_date_x,
+            "y": self.examination_date_y,
+            "width": self.examination_date_width,
+            "height": self.examination_date_height
+        }
+    
+    def get_roi_examination_time(self):
+        return {
+            "x": self.examination_time_x,
+            "y": self.examination_time_y,
+            "width": self.examination_time_width,
+            "height": self.examination_time_height
+        }
+    
+    def get_roi_patient_last_name(self):
+        return {
+            "x": self.patient_last_name_x,
+            "y": self.patient_last_name_y,
+            "width": self.patient_last_name_width,
+            "height": self.patient_last_name_height
+        }
+    
+    def get_roi_patient_first_name(self):
+        return {
+            "x": self.patient_first_name_x,
+            "y": self.patient_first_name_y,
+            "width": self.patient_first_name_width,
+            "height": self.patient_first_name_height
+        }
+    
+    def get_roi_patient_dob(self):
+        return {
+            "x": self.patient_dob_x,
+            "y": self.patient_dob_y,
+            "width": self.patient_dob_width,
+            "height": self.patient_dob_height
+        }
+    
+    def get_roi_endoscope_type(self):
+        return {
+            "x": self.endoscope_type_x,
+            "y": self.endoscope_type_y,
+            "width": self.endoscope_type_width,
+            "height": self.endoscope_type_height
+        }
+    
+    def get_roi_endoscopy_sn(self):
+        return {
+            "x": self.endoscope_sn_x,
+            "y": self.endoscope_sn_y,
+            "width": self.endoscope_sn_width,
+            "height": self.endoscope_sn_height
+        }
+    
+    def get_rois(self):
+        return {
+            "endoscope_image": self.get_roi_endoscope_image(),
+            "examination_date": self.get_roi_examination_date(),
+            "examination_time": self.get_roi_examination_time(),
+            "patient_first_name": self.get_roi_patient_first_name(),
+            "patient_last_name": self.get_roi_patient_last_name(),
+            "patient_dob": self.get_roi_patient_dob(),
+            "endoscope_type": self.get_roi_endoscope_type(),
+            "endoscope_sn": self.get_roi_endoscopy_sn()
+        }

endoreg_db/models/information_source.py

@@ -1,22 +1,29 @@
-from django.db import models
-
-def get_prediction_information_source():
-    _source = InformationSource.objects.get(name="prediction")
-
-    # make sure to return only one object
-    assert _source, "No prediction information source found"
-    return _source
-
-class InformationSourceManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-
-class InformationSource(models.Model):
-    objects = InformationSourceManager()
-
-    name = models.CharField(max_length=100)
-    name_de = models.CharField(max_length=100, blank=True, null=True)
-    name_en = models.CharField(max_length=100, blank=True, null=True)
-
-    def __str__(self):
-        return self.name
+from django.db import models
+
+def get_prediction_information_source():
+    _source = InformationSource.objects.get(name="prediction")
+
+    # make sure to return only one object
+    assert _source, "No prediction information source found"
+    return _source
+
+class InformationSourceManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+
+class InformationSource(models.Model):
+    objects = InformationSourceManager()
+
+    name = models.CharField(max_length=100)
+    name_de = models.CharField(max_length=100, blank=True, null=True)
+    name_en = models.CharField(max_length=100, blank=True, null=True)
+
+    url = models.URLField(blank=True, null=True)
+    description = models.TextField(blank=True, null=True)
+    date = models.DateField(blank=True, null=True)
+
+    def natural_key(self):
+        return (self.name,)
+
+    def __str__(self):
+        return self.name

endoreg_db/models/label/label.py

@@ -1,84 +1,84 @@
-from django.db import models
-
-class LabelTypeManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-
-class LabelType(models.Model):
-    """
-    A class representing a label type.
-
-    Attributes:
-        name (str): The name of the label type.
-        description (str): A description of the label type.
-
-    """
-    name = models.CharField(max_length=255)
-    description = models.TextField(blank=True, null=True)
-
-    objects = LabelTypeManager()
-
-    def natural_key(self):
-        return (self.name,)
-
-    def __str__(self):
-        return self.name
-
-
-class LabelManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-
-class Label(models.Model):
-    """
-    A class representing a label.
-
-    Attributes:
-        name (str): The name of the label.
-        label_type (LabelType): The type of the label.
-        description (str): A description of the label.
-
-    """
-    name = models.CharField(max_length=255)
-    label_type = models.ForeignKey("LabelType", on_delete=models.CASCADE, related_name="labels")
-    description = models.TextField(blank=True, null=True)
-
-    objects = LabelManager()
-
-    def natural_key(self):
-        return (self.name,)
-
-    def __str__(self):
-        return self.name
-
-class LabelSetManager(models.Manager):
-    def get_by_natural_key(self, name):
-        return self.get(name=name)
-
-class LabelSet(models.Model):
-    """
-    A class representing a label set.
-
-    Attributes:
-        name (str): The name of the label set.
-        description (str): A description of the label set.
-
-    """
-    name = models.CharField(max_length=255)
-    description = models.TextField(blank=True, null=True)
-    version = models.IntegerField()
-    labels = models.ManyToManyField("Label", related_name="labels")
-    
-    objects = LabelSetManager()
-
-    def natural_key(self):
-        return (self.name,)
-
-    def __str__(self):
-        return self.name
-    
-    def get_labels_in_order(self):
-        """
-        Get all labels in this label set as list in the correct order.
-        """
-        return list(self.labels.all().order_by('id'))
+from django.db import models
+
+class LabelTypeManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+
+class LabelType(models.Model):
+    """
+    A class representing a label type.
+
+    Attributes:
+        name (str): The name of the label type.
+        description (str): A description of the label type.
+
+    """
+    name = models.CharField(max_length=255)
+    description = models.TextField(blank=True, null=True)
+
+    objects = LabelTypeManager()
+
+    def natural_key(self):
+        return (self.name,)
+
+    def __str__(self):
+        return self.name
+
+
+class LabelManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+
+class Label(models.Model):
+    """
+    A class representing a label.
+
+    Attributes:
+        name (str): The name of the label.
+        label_type (LabelType): The type of the label.
+        description (str): A description of the label.
+
+    """
+    name = models.CharField(max_length=255)
+    label_type = models.ForeignKey("LabelType", on_delete=models.CASCADE, related_name="labels")
+    description = models.TextField(blank=True, null=True)
+
+    objects = LabelManager()
+
+    def natural_key(self):
+        return (self.name,)
+
+    def __str__(self):
+        return self.name
+
+class LabelSetManager(models.Manager):
+    def get_by_natural_key(self, name):
+        return self.get(name=name)
+
+class LabelSet(models.Model):
+    """
+    A class representing a label set.
+
+    Attributes:
+        name (str): The name of the label set.
+        description (str): A description of the label set.
+
+    """
+    name = models.CharField(max_length=255)
+    description = models.TextField(blank=True, null=True)
+    version = models.IntegerField()
+    labels = models.ManyToManyField("Label", related_name="labels")
+    
+    objects = LabelSetManager()
+
+    def natural_key(self):
+        return (self.name,)
+
+    def __str__(self):
+        return self.name
+    
+    def get_labels_in_order(self):
+        """
+        Get all labels in this label set as list in the correct order.
+        """
+        return list(self.labels.all().order_by('id'))

endoreg_db/models/laboratory/__init__.py

@@ -0,0 +1 @@
+from .lab_value import LabValue