endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

endoreg_db/data/lab_value/hematology.yaml

@@ -0,0 +1,169 @@
+# Hematology
+# Hemoglobin: Female: 12–16 g/dL; male: 14–18 g/dL
+- model: endoreg_db.lab_value
+  fields:
+    name: "hemoglobin"
+    name_de: "Hämoglobin"
+    name_en: "Hemoglobin"
+    abbreviation: "Hb"
+    normal_range_gender_dependent: true
+    default_unit: "gram per deciliter"
+    default_normal_range: {
+      "male": {
+        "min": 14, "max": 18
+      },
+      "female": {
+        "min": 12, "max": 16
+      }
+    }
+
+# Hematocrit Female: 37%–47%; male: 42%–50% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "hematocrit"
+    name_de: "Hämatokrit"
+    name_en: "Hematocrit"
+    abbreviation: "Hct"
+    normal_range_gender_dependent: true
+    default_unit: "percent"
+    default_normal_range: {
+      "male": {
+        "min": 42, "max": 50
+      },
+      "female": {
+        "min": 37, "max": 47
+      }
+    }
+
+# Glycosylated hemoglobin 4.0%–5.6% 
+- model: 
+  fields:
+    name: "glycosylated_hemoglobin"
+    name_de: "Glykosyliertes Hämoglobin"
+    name_en: "Glycosylated Hemoglobin"
+    abbreviation: "HbA1c"
+    default_unit: "percent"
+    default_normal_range: {"min": 4.0, "max": 5.6}
+
+# Mean corpuscular volume (MCV): 80–98 fL
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_volume"
+    name_de: "Mittleres korpuskuläres Volumen"
+    name_en: "Mean Corpuscular Volume"
+    abbreviation: "MCV"
+    default_unit: "femtoliter"
+    default_normal_range: {"min": 80, "max": 98}
+
+# Red blood cell distribution width (RDW): 9.0%–14.5% 
+- model: endoreg_db.lab_value
+  fields:
+    name: "red_blood_cell_distribution_width"
+    name_de: "Erythrozytenverteilungsbreite"
+    name_en: "Red Blood Cell Distribution Width"
+    abbreviation: "RDW"
+    default_unit: "percent"
+    default_normal_range: {"min": 9.0, "max": 14.5}
+
+# Mean corpuscular hemoglobin (MCH): 28–32 pg 
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin"
+    name_de: "Mittleres korpuskuläres Hämoglobin"
+    name_en: "Mean Corpuscular Hemoglobin"
+    abbreviation: "MCH"
+    default_unit: "picogram"
+    default_normal_range: {"min": 28, "max": 32}
+
+# Mean corpuscular hemoglobin concentration (MCHC): 33–36 g/dL  
+- model: endoreg_db.lab_value
+  fields:
+    name: "mean_corpuscular_hemoglobin_concentration"
+    name_de: "Mittleres korpuskuläres Hämoglobinkonzentration"
+    name_en: "Mean Corpuscular Hemoglobin Concentration"
+    abbreviation: "MCHC"
+    default_unit: "gram per deciliter"
+    default_normal_range: {"min": 33, "max": 36}
+
+
+# Reticulocytes 0.5%–1.5% of red cells 
+- model: endoreg_db.lab_value
+  fields:
+    name: "reticulocytes"
+    name_de: "Retikulozyten"
+    name_en: "Reticulocytes"
+    abbreviation: "Reti"
+    default_unit: "percent"
+    default_normal_range: {"min": 0.5, "max": 1.5}
+
+# White blood cells (WBC) 4-10 x 10^9/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "white_blood_cells"
+    name_de: "Leukozyten"
+    name_en: "White Blood Cells"
+    abbreviation: "WBC"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 4, "max": 10}
+
+# Neutrophils: 2-8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "neutrophils"
+    name_de: "Neutrophile"
+    name_en: "Neutrophils"
+    abbreviation: "Neu"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 2, "max": 8}
+
+
+# Bands: < 1 x 109/L
+- model: endoreg_db.lab_value
+  fields:
+    name: "bands"
+    name_de: "Stabkernige"
+    name_en: "Bands"
+    abbreviation: "Bands"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"max": 1}
+
+# Lymphocytes: 1000 to 4800/mcL (1 to 4.8 × 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "lymphocytes"
+    name_de: "Lymphozyten"
+    name_en: "Lymphocytes"
+    abbreviation: "Lym"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 1, "max": 4.8}
+
+
+# Monocytes: 0.2-0.8 x 109/L 
+- model: endoreg_db.lab_value
+  fields:
+    name: "monocytes"
+    name_de: "Monozyten"
+    name_en: "Monocytes"
+    abbreviation: "Mon"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 0.2, "max": 0.8}
+
+# Eosinophils: .000-0.600 th/uL (0-6%) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "eosinophils"
+    name_de: "Eosinophile"
+    name_en: "Eosinophils"
+    abbreviation: "Eos"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"max": 0.6}
+
+# Platelets: 150,000-350,000/µL (150-350 x 109/L) 
+- model: endoreg_db.lab_value
+  fields:
+    name: "platelets"
+    name_de: "Thrombozyten"
+    name_en: "Platelets"
+    abbreviation: "Plt"
+    default_unit: "x 10^9 per liter"
+    default_normal_range: {"min": 150, "max": 350}

endoreg_db/data/lab_value/hormones.yaml

@@ -0,0 +1,53 @@
+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroxine_binding_globulin"
+    name_de: "Thyroxin-bindendes Globulin"
+    name_en: "Thyroxine-binding globulin"
+    abbreviation: "TBG"
+    default_unit: "microgram per mililiter"
+    default_normal_range: {"min": 12, "max": 27}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "thyroid_stimulating_hormone"
+    name_de: "Thyroidea-stimulierendes Hormon"
+    name_en: "Thyroid-stimulating hormone"
+    abbreviation: "TSH"
+    default_unit: "microinternational units per mililiter"
+    default_normal_range: {"min": 0.5, "max": 4.0}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_thyroxine"
+    name_de: "Gesamtthyroxin"
+    name_en: "Total Thyroxine"
+    abbreviation: "T4"
+    default_unit: "microgram per deciliter"
+    default_normal_range: {"min": 5, "max": 12}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_triiodothyronine"
+    name_de: "Gesamttriiodthyronin"
+    name_en: "Total Triiodothyronine"
+    abbreviation: "T3"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 80, "max": 180}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_triiodothyronine"
+    name_de: "Freies Triiodthyronin"
+    name_en: "Free Triiodothyronine"
+    abbreviation: "fT3"
+    default_unit: "picogram per mililiter"
+    default_normal_range: {"min": 2.3, "max": 4.2}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "free_thyroxine"
+    name_de: "Freies Thyroxin"
+    name_en: "Free Thyroxine"
+    abbreviation: "fT4"
+    default_unit: "nanogram per deciliter"
+    default_normal_range: {"min": 0.8, "max": 2.8}

endoreg_db/data/lab_value/lipids.yaml

@@ -0,0 +1,44 @@
+# Triglycerides: ˂150 mg/dL
+# Total cholesterol: ˂200 mg/dL
+# High-density lipoprotein (HDL): Female: ˂50 mg/dL; male: ˂40 mg/dL
+# Low-density lipoprotein (LDL): ˂100 mg/dL
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "triglycerides"
+    name_de: "Triglyceride"
+    name_en: "Triglycerides"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 150}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "total_cholesterol"
+    name_de: "Gesamtcholesterin"
+    name_en: "Total Cholesterol"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 200}
+
+- model: endoreg_db.lab_value 
+  fields:
+    name: "high_density_lipoprotein"
+    name_de: "High-Density-Lipoprotein"
+    name_en: "High-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    normal_range_gender_dependent: true
+    default_normal_range: {
+      "female": {
+        "max": 50
+      },
+      "male": {
+        "max": 40
+      }
+    }
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "low_density_lipoprotein"
+    name_de: "Low-Density-Lipoprotein"
+    name_en: "Low-Density Lipoprotein"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 100}

endoreg_db/data/lab_value/misc.yaml

@@ -0,0 +1,30 @@
+# C-reactive protein: < 0.5 mg/dL 
+# D-dimer: ≤ 300 ng/mL (300 µg/L) 
+# Lactate dehydrogenase (LDH): 60-160 U/L
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "c_reactive_protein"
+    name_de: "C-reaktives Protein"
+    name_en: "C-reactive protein"
+    abbreviation: "CRP"
+    default_unit: "miligram per deciliter"
+    default_normal_range: {"max": 0.5}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "d_dimer"
+    name_de: "D-Dimer"
+    name_en: "D-dimer"
+    abbreviation: "D-Dimer"
+    default_unit: "nanogram per mililiter"
+    default_normal_range: {"max": 300}
+
+- model: endoreg_db.lab_value
+  fields:
+    name: "lactate_dehydrogenase"
+    name_de: "Laktatdehydrogenase"
+    name_en: "Lactate dehydrogenase"
+    abbreviation: "LDH"
+    default_unit: "units per liter"
+    default_normal_range: {"min": 60, "max": 160}

endoreg_db/data/lab_value/renal_function.yaml

@@ -0,0 +1,11 @@
+- model: endoreg_db.lab_value
+  fields:
+    name: "estimated_glomerular_filtration_rate"
+    name_de: "Geschätzte Glomeruläre Filtrationsrate"
+    name_en: "estimated glomerular filtration rate"
+    abbreviation: "eGFR"
+    default_unit: "mililiter per minute per 1.73m^2"
+    default_normal_range: {
+      "min": 60,
+      "max": 120
+    }

endoreg_db/data/label/label/data.yaml

@@ -1,62 +1,62 @@
-# labels are: "appendix", "ileocecal_valve", "polyp", "water_jet", "digital_chromo_endoscopy", "instrument", "wound", "blood", "ileum", "low_quality", "clip", "outside"
-
-- model: endoreg_db.Label
-  fields:
-    name: "appendix"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "ileocecal_valve"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "polyp"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "water_jet"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "digital_chromo_endoscopy"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "instrument"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "wound"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "blood"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "ileum"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "low_quality"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "clip"
-    label_type: "classification"
-
-- model: endoreg_db.Label
-  fields:
-    name: "outside"
-    label_type: "classification"
-
+# labels are: "appendix", "ileocecal_valve", "polyp", "water_jet", "digital_chromo_endoscopy", "instrument", "wound", "blood", "ileum", "low_quality", "clip", "outside"
+
+- model: endoreg_db.Label
+  fields:
+    name: "appendix"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "ileocecal_valve"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "polyp"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "water_jet"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "digital_chromo_endoscopy"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "instrument"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "wound"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "blood"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "ileum"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "low_quality"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "clip"
+    label_type: "classification"
+
+- model: endoreg_db.Label
+  fields:
+    name: "outside"
+    label_type: "classification"
+

endoreg_db/data/label/label-set/data.yaml

@@ -1,18 +1,18 @@
-- model: endoreg_db.LabelSet
-  fields:
-    name: "multilabel_classification"
-    version: 0
-    labels: [
-      "appendix",
-      "ileocecal_valve",
-      "polyp",
-      "water_jet",
-      "digital_chromo_endoscopy",
-      "instrument",
-      "wound",
-      "blood",
-      "ileum",
-      "low_quality",
-      "clip",
-      "outside",
+- model: endoreg_db.LabelSet
+  fields:
+    name: "multilabel_classification"
+    version: 0
+    labels: [
+      "appendix",
+      "ileocecal_valve",
+      "polyp",
+      "water_jet",
+      "digital_chromo_endoscopy",
+      "instrument",
+      "wound",
+      "blood",
+      "ileum",
+      "low_quality",
+      "clip",
+      "outside",
     ]

endoreg_db/data/label/label-type/data.yaml

@@ -1,7 +1,7 @@
-- model: endoreg_db.LabelType
-  fields:
-    name: "classification"
-
-- model: endoreg_db.LabelType
-  fields:
+- model: endoreg_db.LabelType
+  fields:
+    name: "classification"
+
+- model: endoreg_db.LabelType
+  fields:
     name: "object_detection"

endoreg_db/data/material/material.yaml

@@ -0,0 +1,91 @@
+- model: endoreg_db.Material
+  fields:
+    name: cardboard
+    name_de: Pappe
+    name_en: cardboard
+    emission_factor: material_emission_cardboard
+
+- fields:
+    name: foil
+    name_de: Folien
+    name_en: foil
+    emission_factor: material_emission_foil
+  model: endoreg_db.Material
+
+- fields:
+    name: gold
+    name_de: Gold
+    name_en: gold
+    emission_factor: material_emission_gold
+
+
+- fields:
+    name: metal
+    name_de: Metall
+    name_en: metal
+    emission_factor: material_emission_metal
+  model: endoreg_db.Material
+
+- fields:
+    name: nickel
+    name_de: Nickel
+    name_en: nickel
+    emission_factor: material_emission_nickel
+  model: endoreg_db.Material
+
+- fields:
+    name: paper
+    name_de: Papier
+    name_en: paper
+    emission_factor: material_emission_paper
+  model: endoreg_db.Material
+
+- fields:
+    name: paper_coated
+    name_de: Beschichtetes Papier
+    name_en: paper_coated
+    emission_factor: material_emission_paper_coated
+  model: endoreg_db.Material
+
+- fields:
+    name: plastic
+    name_de: Kunststoff
+    name_en: plastic
+    emission_factor: material_emission_plastic
+  model: endoreg_db.Material
+- fields:
+    name: plastic_coated
+    name_de: Kunststoff beschichtet
+    name_en: plastic_coated
+    emission_factor: material_emission_plastic_coated
+  model: endoreg_db.Material
+- fields:
+    name: silicone
+    name_de: Silikon
+    name_en: silicone
+    emission_factor: material_emission_silicone
+  model: endoreg_db.Material
+- fields:
+    name: steel
+    name_de: Stahl
+    name_en: steel
+    emission_factor: material_emission_steel
+  model: endoreg_db.Material
+- fields:
+    name: tantal
+    name_de: Tantal
+    name_en: tantal
+    emission_factor: material_emission_tantal
+  model: endoreg_db.Material
+- fields:
+    name: textile
+    name_de: Textil
+    name_en: textile
+    emission_factor: material_emission_textile
+  model: endoreg_db.Material
+- fields:
+    name: titan
+    name_de: Titan
+    name_en: titan
+    emission_factor: material_emission_titan
+  model: endoreg_db.Material

endoreg_db/data/medication/anticoagulation.yaml

@@ -0,0 +1,65 @@
+- models: endoreg_db.models.medication
+  fields:
+    name: "apixaban"
+    name_de: "Apixaban"
+    name_en: "Apixaban"
+    adapt_to_renal_function: true
+    adapt_to_hepatic_function: true
+    adapt_to_indication: true
+    adapt_to_age: true
+    adapt_to_weight: false
+    adapt_to_risk: true
+    default_unit: "miligram"
+
+- models: endoreg_db.models.medication
+  fields:
+    name: "dabigatran"
+    name_de: "Dabigatran"
+    name_en: "Dabigatran"
+    adapt_to_renal_function: true
+    adapt_to_hepatic_function: true
+    adapt_to_indication: true
+    adapt_to_age: true
+    adapt_to_weight: false
+    adapt_to_risk: true
+    default_unit: "miligram"
+
+- models: endoreg_db.models.medication
+  fields:
+    name: "edoxaban"
+    name_de: "Edoxaban"
+    name_en: "Edoxaban"
+    adapt_to_renal_function: true
+    adapt_to_hepatic_function: true
+    adapt_to_indication: true
+    adapt_to_age: true
+    adapt_to_weight: false
+    adapt_to_risk: true
+    default_unit: "miligram"
+
+- models: endoreg_db.models.medication
+  fields:
+    name: "rivaroxaban"
+    name_de: "Rivaroxaban"
+    name_en: "Rivaroxaban"
+    adapt_to_renal_function: true
+    adapt_to_hepatic_function: true
+    adapt_to_indication: true
+    adapt_to_age: true
+    adapt_to_weight: false
+    adapt_to_risk: true
+    default_unit: "miligram"
+
+- models: endoreg_db.models.medication
+  fields:
+    name: "enoxaparin"
+    name_de: "Enoxaparin"
+    name_en: "Enoxaparin"
+    adapt_to_renal_function: true
+    adapt_to_hepatic_function: false
+    adapt_to_indication: true
+    adapt_to_age: false
+    adapt_to_weight: true
+    adapt_to_risk: true
+    default_unit: "miligram"
+