endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

endoreg_db/queries/get/__init__.py

@@ -1,6 +1,6 @@
-from .annotation import *
-from .center import *
-from .model import *
-from .patient import *
-from .patient_examination import *
+from .annotation import *
+from .center import *
+from .model import *
+from .patient import *
+from .patient_examination import *
 from .video import *

endoreg_db/queries/get/center.py

@@ -1,42 +1,42 @@
-from endoreg_db.models import Center
-from typing import Optional
-
-def get_centers() -> Center:
-    """
-    Returns all Center objects from the database.
-    """
-    return Center.objects.all()
-
-def get_center_by_name(name) -> Optional[Center]:
-    """Retrieve a Center object by its name.
-
-    Args:
-        name (str): The name of the center to retrieve.
-
-    Returns:
-        Optional[Center]: The Center object with the given name, or None if it does not exist.
-    """
-    return Center.objects.get(name=name)
-
-def get_center_by_id(id) -> Optional[Center]:
-    """Retrieve a Center object by its id.
-
-    Args:
-        id (int): The id of the center to retrieve.
-
-    Returns:
-        Optional[Center]: The Center object with the given id, or None if it does not exist.
-    """
-    return Center.objects.get(id=id)
-
-def get_center_by_natural_key(name: str) -> Optional[Center]:
-    """
-    Retrieve a Center object by its natural key.
-
-    Args:
-        name: The name of the center to retrieve.
-
-    Returns:
-        The Center object with the given name, or None if it does not exist.
-    """
-    return Center.objects.get_by_natural_key(name=name)
+from endoreg_db.models import Center
+from typing import Optional
+
+def get_centers() -> Center:
+    """
+    Returns all Center objects from the database.
+    """
+    return Center.objects.all()
+
+def get_center_by_name(name) -> Optional[Center]:
+    """Retrieve a Center object by its name.
+
+    Args:
+        name (str): The name of the center to retrieve.
+
+    Returns:
+        Optional[Center]: The Center object with the given name, or None if it does not exist.
+    """
+    return Center.objects.get(name=name)
+
+def get_center_by_id(id) -> Optional[Center]:
+    """Retrieve a Center object by its id.
+
+    Args:
+        id (int): The id of the center to retrieve.
+
+    Returns:
+        Optional[Center]: The Center object with the given id, or None if it does not exist.
+    """
+    return Center.objects.get(id=id)
+
+def get_center_by_natural_key(name: str) -> Optional[Center]:
+    """
+    Retrieve a Center object by its natural key.
+
+    Args:
+        name: The name of the center to retrieve.
+
+    Returns:
+        The Center object with the given name, or None if it does not exist.
+    """
+    return Center.objects.get_by_natural_key(name=name)

endoreg_db/queries/get/model.py

@@ -1,13 +1,13 @@
-from endoreg_db.models import (
-    ModelMeta,
-)
-
-def get_latest_model_by_name(model_name):
-    """
-    Expects model name. Fetches models by name from database, sorts by version and returns latest version.
-    """
-    models = ModelMeta.objects.filter(name=model_name).order_by('-version')
-    if len(models) == 0:
-        return None
-    else:
-        return models[0]
+from endoreg_db.models import (
+    ModelMeta,
+)
+
+def get_latest_model_by_name(model_name):
+    """
+    Expects model name. Fetches models by name from database, sorts by version and returns latest version.
+    """
+    models = ModelMeta.objects.filter(name=model_name).order_by('-version')
+    if len(models) == 0:
+        return None
+    else:
+        return models[0]

endoreg_db/queries/get/patient.py

@@ -1,14 +1,14 @@
-from endoreg_db.models import Patient
-
-def get_patients() -> Patient:
-    """
-    Returns all Patient objects from the database.
-    """
-    return Patient.objects.all()
-
-def get_patients_without_dob() -> Patient:
-    """
-    Returns all Patient objects from the database without a date of birth.
-    """
-    return Patient.objects.filter(dob__isnull=True)
-
+from endoreg_db.models import Patient
+
+def get_patients() -> Patient:
+    """
+    Returns all Patient objects from the database.
+    """
+    return Patient.objects.all()
+
+def get_patients_without_dob() -> Patient:
+    """
+    Returns all Patient objects from the database without a date of birth.
+    """
+    return Patient.objects.filter(dob__isnull=True)
+

endoreg_db/queries/get/patient_examination.py

@@ -1,20 +1,20 @@
-from endoreg_db.models import PatientExamination
-from typing import Optional
-
-def get_patient_examinations() -> PatientExamination:
-    """
-    Returns all PatientExamination objects from the database.
-    """
-    return PatientExamination.objects.all()
-
-def get_patient_examinations_without_report_file() -> PatientExamination:
-    """
-    Returns all PatientExamination objects from the database without a report_file.
-    """
-    return PatientExamination.objects.filter(report_file__isnull=True)
-
-def get_patient_examinations_without_video() -> PatientExamination:
-    """
-    Returns all PatientExamination objects from the database without a video.
-    """
-    return PatientExamination.objects.filter(video__isnull=True)
+from endoreg_db.models import PatientExamination
+from typing import Optional
+
+def get_patient_examinations() -> PatientExamination:
+    """
+    Returns all PatientExamination objects from the database.
+    """
+    return PatientExamination.objects.all()
+
+def get_patient_examinations_without_report_file() -> PatientExamination:
+    """
+    Returns all PatientExamination objects from the database without a report_file.
+    """
+    return PatientExamination.objects.filter(report_file__isnull=True)
+
+def get_patient_examinations_without_video() -> PatientExamination:
+    """
+    Returns all PatientExamination objects from the database without a video.
+    """
+    return PatientExamination.objects.filter(video__isnull=True)

endoreg_db/queries/get/report_file.py

@@ -1,33 +1,33 @@
-from endoreg_db.models import ReportFile
-from typing import Optional
-
-def get_report_files() -> ReportFile:
-    """
-    Returns all ReportFile objects from the database.
-    """
-    return ReportFile.objects.all()
-
-def get_report_file_by_id(id) -> Optional[ReportFile]:
-    """Retrieve a ReportFile object by its id.
-
-    Args:
-        id (int): The id of the report_file to retrieve.
-
-    Returns:
-        Optional[ReportFile]: The ReportFile object with the given id, or None if it does not exist.
-    """
-    return ReportFile.objects.get(id=id)
-
-def get_report_files_without_examination() -> ReportFile:
-    """
-    Returns all ReportFile objects from the database without an examination.
-    """
-    return ReportFile.objects.filter(patient_examination__isnull=True)
-
-def get_report_files_without_patient() -> ReportFile:
-    """
-    Returns all ReportFile objects from the database without a patient.
-    """
-    return ReportFile.objects.filter(patient__isnull=True)
-
-
+from endoreg_db.models import ReportFile
+from typing import Optional
+
+def get_report_files() -> ReportFile:
+    """
+    Returns all ReportFile objects from the database.
+    """
+    return ReportFile.objects.all()
+
+def get_report_file_by_id(id) -> Optional[ReportFile]:
+    """Retrieve a ReportFile object by its id.
+
+    Args:
+        id (int): The id of the report_file to retrieve.
+
+    Returns:
+        Optional[ReportFile]: The ReportFile object with the given id, or None if it does not exist.
+    """
+    return ReportFile.objects.get(id=id)
+
+def get_report_files_without_examination() -> ReportFile:
+    """
+    Returns all ReportFile objects from the database without an examination.
+    """
+    return ReportFile.objects.filter(patient_examination__isnull=True)
+
+def get_report_files_without_patient() -> ReportFile:
+    """
+    Returns all ReportFile objects from the database without a patient.
+    """
+    return ReportFile.objects.filter(patient__isnull=True)
+
+

endoreg_db/queries/get/video.py

@@ -1,31 +1,31 @@
-from endoreg_db.models import Video, PatientExamination
-from typing import Optional
-
-def get_videos() -> Video:
-    """
-    Returns all Video objects from the database.
-    """
-    return Video.objects.all()
-
-def get_video_by_id(id) -> Optional[Video]:
-    """Retrieve a Video object by its id.
-
-    Args:
-        id (int): The id of the video to retrieve.
-
-    Returns:
-        Optional[Video]: The Video object with the given id, or None if it does not exist.
-    """
-    return Video.objects.get(id=id)
-
-def get_video_without_examination() -> Video:
-    """
-    Returns all Video objects from the database without an examination.
-    """
-    return Video.objects.filter(patient_examination__isnull=True)
-
-def get_video_without_patient() -> Video:
-    """
-    Returns all Video objects from the database without a patient.
-    """
-    return Video.objects.filter(patient__isnull=True)
+from endoreg_db.models import Video, PatientExamination
+from typing import Optional
+
+def get_videos() -> Video:
+    """
+    Returns all Video objects from the database.
+    """
+    return Video.objects.all()
+
+def get_video_by_id(id) -> Optional[Video]:
+    """Retrieve a Video object by its id.
+
+    Args:
+        id (int): The id of the video to retrieve.
+
+    Returns:
+        Optional[Video]: The Video object with the given id, or None if it does not exist.
+    """
+    return Video.objects.get(id=id)
+
+def get_video_without_examination() -> Video:
+    """
+    Returns all Video objects from the database without an examination.
+    """
+    return Video.objects.filter(patient_examination__isnull=True)
+
+def get_video_without_patient() -> Video:
+    """
+    Returns all Video objects from the database without a patient.
+    """
+    return Video.objects.filter(patient__isnull=True)

endoreg_db/serializers/__init__.py

@@ -1,10 +1,10 @@
-from .ai_model import *
-from .annotation import *
-from .center import *
-from .examination import *
-from .frame import *
-from .hardware import *
-from .label import *
-from .patient import *
-from .report_file import *
+from .ai_model import *
+from .annotation import *
+from .center import *
+from .examination import *
+from .frame import *
+from .hardware import *
+from .label import *
+from .patient import *
+from .report_file import *
 from .video import *

endoreg_db/serializers/ai_model.py

@@ -1,19 +1,19 @@
-from endoreg_db.models import ModelMeta, ModelType, ActiveModel
-from rest_framework import serializers
-
-class ModelMetaSerializer(serializers.ModelSerializer):
-    weights = serializers.FileField(use_url=True)  # use_url=True will provide the file's URI
-
-    class Meta:
-        model = ModelMeta
-        fields = '__all__'
-
-class ModelTypeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ModelType
-        fields = '__all__'
-
-class ActiveModelSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ActiveModel
+from endoreg_db.models import ModelMeta, ModelType, ActiveModel
+from rest_framework import serializers
+
+class ModelMetaSerializer(serializers.ModelSerializer):
+    weights = serializers.FileField(use_url=True)  # use_url=True will provide the file's URI
+
+    class Meta:
+        model = ModelMeta
+        fields = '__all__'
+
+class ModelTypeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ModelType
+        fields = '__all__'
+
+class ActiveModelSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ActiveModel
         fields = '__all__'

endoreg_db/serializers/annotation.py

@@ -1,17 +1,17 @@
-from rest_framework import serializers
-from endoreg_db.models import LegacyBinaryClassificationAnnotationTask, BinaryClassificationAnnotationTask, ImageClassificationAnnotation
-
-class LegacyBinaryClassificationAnnotationTaskSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = LegacyBinaryClassificationAnnotationTask
-        fields = '__all__'
-
-class BinaryClassificationAnnotationTaskSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = BinaryClassificationAnnotationTask
-        fields = '__all__'
-
-class ImageClassificationAnnotationSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ImageClassificationAnnotation
-        fields = '__all__'
+from rest_framework import serializers
+from endoreg_db.models import LegacyBinaryClassificationAnnotationTask, BinaryClassificationAnnotationTask, ImageClassificationAnnotation
+
+class LegacyBinaryClassificationAnnotationTaskSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = LegacyBinaryClassificationAnnotationTask
+        fields = '__all__'
+
+class BinaryClassificationAnnotationTaskSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = BinaryClassificationAnnotationTask
+        fields = '__all__'
+
+class ImageClassificationAnnotationSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ImageClassificationAnnotation
+        fields = '__all__'

endoreg_db/serializers/center.py

@@ -1,11 +1,11 @@
-from rest_framework import serializers
-from endoreg_db.models import (
-    Center,
-)
-
-class CenterSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = Center
-        fields = '__all__'
-
-
+from rest_framework import serializers
+from endoreg_db.models import (
+    Center,
+)
+
+class CenterSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Center
+        fields = '__all__'
+
+

endoreg_db/serializers/examination.py

@@ -1,33 +1,33 @@
-from rest_framework import serializers
-from endoreg_db.models import (
-    Examination,
-    ExaminationTimeType,
-    ExaminationTime,
-    ExaminationType,
-    PatientExamination
-)
-
-class ExaminationTimeTypeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ExaminationTimeType
-        fields = '__all__'
-
-class ExaminationTimeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ExaminationTime
-        fields = '__all__'
-
-class ExaminationTypeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = ExaminationType
-        fields = '__all__'
-
-class ExaminationSerializer(serializers.ModelSerializer): 
-    class Meta:
-        model = Examination
-        fields = '__all__'
-
-class PatientExaminationSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = PatientExamination
+from rest_framework import serializers
+from endoreg_db.models import (
+    Examination,
+    ExaminationTimeType,
+    ExaminationTime,
+    ExaminationType,
+    PatientExamination
+)
+
+class ExaminationTimeTypeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ExaminationTimeType
+        fields = '__all__'
+
+class ExaminationTimeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ExaminationTime
+        fields = '__all__'
+
+class ExaminationTypeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = ExaminationType
+        fields = '__all__'
+
+class ExaminationSerializer(serializers.ModelSerializer): 
+    class Meta:
+        model = Examination
+        fields = '__all__'
+
+class PatientExaminationSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = PatientExamination
         fields = '__all__'

endoreg_db/serializers/frame.py

@@ -1,13 +1,13 @@
-from rest_framework import serializers
-from endoreg_db.models import Frame, LegacyFrame
-
-class FrameSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = Frame
-        fields = '__all__'
-
-class LegacyFrameSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = LegacyFrame
-        fields = '__all__'
-
+from rest_framework import serializers
+from endoreg_db.models import Frame, LegacyFrame
+
+class FrameSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Frame
+        fields = '__all__'
+
+class LegacyFrameSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = LegacyFrame
+        fields = '__all__'
+

endoreg_db/serializers/hardware.py

@@ -1,21 +1,21 @@
-from rest_framework import serializers
-from endoreg_db.models import (
-    Endoscope,
-    EndoscopeType,
-    EndoscopyProcessor,
-)
-
-class EndoscopeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = Endoscope
-        fields = '__all__'
-
-class EndoscopyProcessorSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = EndoscopyProcessor
-        fields = '__all__'
-
-class EndoscopeTypeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = EndoscopeType
+from rest_framework import serializers
+from endoreg_db.models import (
+    Endoscope,
+    EndoscopeType,
+    EndoscopyProcessor,
+)
+
+class EndoscopeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Endoscope
+        fields = '__all__'
+
+class EndoscopyProcessorSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = EndoscopyProcessor
+        fields = '__all__'
+
+class EndoscopeTypeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = EndoscopeType
         fields = '__all__'

endoreg_db/serializers/label.py

@@ -1,22 +1,22 @@
-from rest_framework import serializers
-from endoreg_db.models import (
-    Label,
-    LabelSet,
-    LabelType,
-)
-
-class LabelTypeSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = LabelType
-        fields = '__all__'
-
-class LabelSetSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = LabelSet
-        fields = '__all__'
-
-class LabelSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = Label
-        fields = '__all__'
-        
+from rest_framework import serializers
+from endoreg_db.models import (
+    Label,
+    LabelSet,
+    LabelType,
+)
+
+class LabelTypeSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = LabelType
+        fields = '__all__'
+
+class LabelSetSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = LabelSet
+        fields = '__all__'
+
+class LabelSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Label
+        fields = '__all__'
+        

endoreg_db/serializers/patient.py

@@ -1,10 +1,10 @@
-from rest_framework import serializers
-from endoreg_db.models import (
-    Patient,
-)
-
-class PatientSerializer(serializers.ModelSerializer):
-    class Meta:
-        model = Patient
-        fields = '__all__'
-
+from rest_framework import serializers
+from endoreg_db.models import (
+    Patient,
+)
+
+class PatientSerializer(serializers.ModelSerializer):
+    class Meta:
+        model = Patient
+        fields = '__all__'
+