endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml

@@ -0,0 +1,12 @@
+- fields:
+    distance: 1000
+    emission_factor: transport_product_emission_generic_europe
+    name: generic_europe
+    unit: kilometer
+  model: endoreg_db.TransportRoute
+- fields:
+    distance: 10000
+    emission_factor: transport_product_emission_generic_overseas
+    name: generic_overseas
+    unit: kilometer
+  model: endoreg_db.TransportRoute

endoreg_db/data/unit/concentration.yaml

@@ -0,0 +1,92 @@
+# g / l and equivalents; ascending by gram, then ascending by liter
+- model: endoreg_db.unit
+  fields: 
+    name: "picogram per mililiter"
+    name_de: "Pikogramm pro Mililiter"
+    name_en: "picogram per mililiter"
+    abbreviation: "pg/ml"
+
+
+- model: endoreg_db.unit
+  fields:
+    name: "nanogram per mililiter"
+    name_de: "Nanogramm pro Mililiter"
+    name_en: "nanogram per mililiter"
+    abbreviation: "ng/ml"
+
+- model: endoreg_db.unit
+  fields:
+    name: "nanogram per deciliter"
+    name_de: "Nanogramm pro Deziliter"
+    name_en: "nanogram per deciliter"
+
+- model: endoreg_db.unit
+  fields:
+    name: "microgram per mililiter"
+    name_de: "Microgramm pro Mililiter"
+    name_en: "microgram per mililiter"
+    abbreviation: "µg/ml"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "microgram per deciliter"
+    abbreviation: "µg/dL"
+    name_de: "Mikrogramm pro Deziliter"
+    name_en: "microgram per deciliter"
+    description: "Micrograms per deciliter, a unit of measurement for concentration."
+
+- model: endoreg_db.unit
+  fields:
+    name: "gram per deciliter"
+    name_de: "Gramm pro Deziliter"
+    name_en: "gram per deciliter"
+  
+
+# mol / l
+- model: endoreg_db.Unit
+  fields:
+    name: "milimole per liter"
+    abbreviation: "mmol/L"
+    name_de: "milimol pro Liter"
+    name_en: "milimole per liter"
+    description: "milimoles per liter, a unit of measurement for concentration in blood."
+
+- model: endoreg_db.Unit
+  fields:
+    name: "miliequivalent per liter"
+    abbreviation: "mEq/L"
+    name_de: "miliäquivalent pro Liter"
+    name_en: "miliequivalent per liter"
+    description: "miliequivalents per liter, used for electrolytes concentration."
+
+- model: endoreg_db.Unit
+  fields:
+    name: "miligram per deciliter"
+    abbreviation: "mg/dL"
+    name_de: "miligramm pro Deziliter"
+    name_en: "miligram per deciliter"
+    description: "miligrams per deciliter, commonly used for various blood measurements."
+
+# x 10^9 per liter
+- model: endoreg_db.Unit
+  fields:
+    name: "x 10^9 per liter"
+    abbreviation: "x 10^9/L"
+    name_de: "x 10^9 pro Liter"
+    name_en: "x 10^9 per liter"
+    description: "Number of cells per liter, often used for blood cell counts."
+
+# U / l
+- model: endoreg_db.unit
+  fields:
+    name: "units per liter"
+    name_de: "Units pro Liter"
+    name_en: "units per liter"
+    abbreviation: "U/l"
+
+- model: endoreg_db.unit
+  fields:
+    name: "microinternational units per mililiter"
+    name_de: "Mikro-Internationale Einheiten pro Mililiter"
+    name_en: "micro-international units per mililiter"
+    abbreviation: "µU/ml"

endoreg_db/data/unit/data.yaml

@@ -1,17 +1,17 @@
-- model: endoreg_db.Unit
-  fields:
-    name: "liters-per-minute"
-    abbreviation: "l/min"
-    name_de: "Liter pro Minute"
-    name_en: "Liters per Minute"
-    description: "liters per minute"
-
-
-# kilowatt-hours
-- model: endoreg_db.Unit
-  fields:
-    name: "kilowatt-hours"
-    abbreviation: "kWh"
-    name_de: "Kilowattstunden"
-    name_en: "Kilowatt-hours"
-    description: "kilowatt-hours"
+- model: endoreg_db.Unit
+  fields:
+    name: "liters-per-minute"
+    abbreviation: "l/min"
+    name_de: "Liter pro Minute"
+    name_en: "Liters per Minute"
+    description: "liters per minute"
+
+
+# kilowatt-hours
+- model: endoreg_db.Unit
+  fields:
+    name: "kilowatt-hours"
+    abbreviation: "kWh"
+    name_de: "Kilowattstunden"
+    name_en: "Kilowatt-hours"
+    description: "kilowatt-hours"

endoreg_db/data/unit/length.yaml

@@ -1,31 +1,31 @@
-- model: endoreg_db.Unit
-  fields:
-    name: "millimeter"
-    abbreviation: "mm"
-    name_de: "Millimeter"
-    name_en: "Millimeter"
-    description: "millimeters"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "centimeter"
-    abbreviation: "cm"
-    name_de: "Zentimeter"
-    name_en: "Centimeter"
-    description: "centimeters"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "meter"
-    abbreviation: "m"
-    name_de: "Meter"
-    name_en: "Meter"
-    description: "meters"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "kilometer"
-    abbreviation: "km"
-    name_de: "Kilometer"
-    name_en: "Kilometer"
+- model: endoreg_db.Unit
+  fields:
+    name: "milimeter"
+    abbreviation: "mm"
+    name_de: "milimeter"
+    name_en: "milimeter"
+    description: "milimeters"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "centimeter"
+    abbreviation: "cm"
+    name_de: "Zentimeter"
+    name_en: "Centimeter"
+    description: "centimeters"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "meter"
+    abbreviation: "m"
+    name_de: "Meter"
+    name_en: "Meter"
+    description: "meters"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "kilometer"
+    abbreviation: "km"
+    name_de: "Kilometer"
+    name_en: "Kilometer"
     description: "kilometers"

endoreg_db/data/unit/misc.yaml

@@ -0,0 +1,20 @@
+- model: endoreg_db.unit
+  fields:
+    name: "percent"
+    abbreviation: "%"
+    name_de: "Prozent"
+    name_en: "percent"
+
+- model: endoreg_db.unit
+  fields:
+    name: "ratio"
+    abbreviation: ""
+    name_de: "Ratio"
+    name_en: "ratio"
+
+- model: endoreg_db.unit
+  fields:
+    name: "dose"
+    name_de: "Dosierung(en)"
+    name_en: "dose(s)"
+    abbreviation: ""

endoreg_db/data/unit/rate.yaml

@@ -0,0 +1,6 @@
+- model: endoreg_db.unit
+  fields:
+    name: "mililiter per minute per 1.73m^2"
+    name_de: "ml/min/1.73m²"
+    name_en: "ml/min/1.73m²"
+    abbreviation: "ml/min/1.73m²"

endoreg_db/data/unit/time.yaml

@@ -0,0 +1,13 @@
+- model: endoreg_db.unit
+  fields:
+    name: "seconds"
+    abbreviation: "s"
+    name_de: "Sekunden"
+    name_en: "Sekunden"
+
+- model: endoreg_db.unit
+  fields:
+    name: "minutes"
+    abbreviation: "min"
+    name_de: "Minuten"
+    name_en: "Minutes"

endoreg_db/data/unit/volume.yaml

@@ -1,26 +1,35 @@
-# Units/data.yaml
-
-- model: endoreg_db.Unit
-  fields:
-    name: "milliliter"
-    abbreviation: "ml"
-    name_de: "Milliliter"
-    name_en: "Milliliter"
-    description: "milliliters"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "liter"
-    abbreviation: "l"
-    name_de: "Liter"
-    name_en: "Liter"
-    description: "liters"
-
-# cubic_meter
-- model: endoreg_db.Unit
-  fields:
-    name: "cubic_meter"
-    abbreviation: "m³"
-    name_de: "Kubikmeter"
-    name_en: "Cubic Meter"
-    description: "cubic meters"
+# Units/data.yaml
+
+# femptolitre
+- model: endoreg_db.Unit
+  fields:
+    name: "femtoliter"
+    abbreviation: "fl"
+    name_de: "Femtoliter"
+    name_en: "Femtolitre"
+    description: "femtoliters"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "mililiter"
+    abbreviation: "ml"
+    name_de: "mililiter"
+    name_en: "mililiter"
+    description: "mililiters"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "liter"
+    abbreviation: "l"
+    name_de: "Liter"
+    name_en: "Liter"
+    description: "liters"
+
+# cubic_meter
+- model: endoreg_db.Unit
+  fields:
+    name: "cubic_meter"
+    abbreviation: "m³"
+    name_de: "Kubikmeter"
+    name_en: "Cubic Meter"
+    description: "cubic meters"

endoreg_db/data/unit/weight.yaml

@@ -1,31 +1,38 @@
-- model: endoreg_db.Unit
-  fields:
-    name: "microgram"
-    abbreviation: "µg"
-    name_de: "Mikrogramm"
-    name_en: "Microgram"
-    description: "micrograms"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "milligram"
-    abbreviation: "mg"
-    name_de: "Milligramm"
-    name_en: "Milligram"
-    description: "milligrams"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "gram"
-    abbreviation: "g"
-    name_de: "Gramm"
-    name_en: "Gram"
-    description: "grams"
-
-- model: endoreg_db.Unit
-  fields:
-    name: "kilogram"
-    abbreviation: "kg"
-    name_de: "Kilogramm"
-    name_en: "Kilogram"
+- model: endoreg_db.unit
+  fields:
+    name: "picogram"
+    abbreviation: "pg"
+    name_de: "Picogramm"
+    name_en: "Picogram"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "microgram"
+    abbreviation: "µg"
+    name_de: "Mikrogramm"
+    name_en: "Microgram"
+    description: "micrograms"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "miligram"
+    abbreviation: "mg"
+    name_de: "miligramm"
+    name_en: "miligram"
+    description: "miligrams"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "gram"
+    abbreviation: "g"
+    name_de: "Gramm"
+    name_en: "Gram"
+    description: "grams"
+
+- model: endoreg_db.Unit
+  fields:
+    name: "kilogram"
+    abbreviation: "kg"
+    name_de: "Kilogramm"
+    name_en: "Kilogram"
     description: "kilograms"

endoreg_db/data/waste/data.yaml

@@ -0,0 +1,12 @@
+- model: endoreg_db.Waste
+  fields:
+    name: general_waste
+    name_de: Allgemeiner Abfall
+    name_en: General Waste
+
+- model: endoreg_db.Waste
+  fields:
+    name: medical_waste
+    name_de: Medizinischer Abfall
+    name_en: Medical Waste
+    

endoreg_db/forms/__init__.py

@@ -1,3 +1,3 @@
-from .unit import Unit
-from .settings import ActiveModelForm
+from .unit import Unit
+from .settings import ActiveModelForm
 from .questionnaires import *

endoreg_db/forms/questionnaires/tto_questionnaire.py

@@ -1,23 +1,23 @@
-# Path: endoreg_db/forms/questionnaires/tto_questionnaire.py
-from endoreg_db.models import TtoQuestionnaire
-from django import forms
-
-class TtoQuestionnaireForm(forms.ModelForm):
-    class Meta:
-        model = TtoQuestionnaire
-        fields = '__all__'
-        widgets = {
-            # Specify Bootstrap classes for other fields as needed
-            'patient_name': forms.TextInput(attrs={'class': 'form-control'}),
-            'birth_date': forms.DateInput(attrs={'class': 'form-control', 'type': 'date'}),
-            # You can continue to specify widgets for other fields
-        }
-
-
-from django.views.generic.edit import CreateView
-from django.urls import reverse_lazy
-
-class TtoQuestionnaireCreate(CreateView):
-    model = TtoQuestionnaire
-    form_class = TtoQuestionnaireForm
-    success_url = reverse_lazy('questionnaire_success')  # Redirect to a success page after submission
+# Path: endoreg_db/forms/questionnaires/tto_questionnaire.py
+from endoreg_db.models import TtoQuestionnaire
+from django import forms
+
+class TtoQuestionnaireForm(forms.ModelForm):
+    class Meta:
+        model = TtoQuestionnaire
+        fields = '__all__'
+        widgets = {
+            # Specify Bootstrap classes for other fields as needed
+            'patient_name': forms.TextInput(attrs={'class': 'form-control'}),
+            'birth_date': forms.DateInput(attrs={'class': 'form-control', 'type': 'date'}),
+            # You can continue to specify widgets for other fields
+        }
+
+
+from django.views.generic.edit import CreateView
+from django.urls import reverse_lazy
+
+class TtoQuestionnaireCreate(CreateView):
+    model = TtoQuestionnaire
+    form_class = TtoQuestionnaireForm
+    success_url = reverse_lazy('questionnaire_success')  # Redirect to a success page after submission

endoreg_db/forms/settings/__init__.py

@@ -1,8 +1,8 @@
-# forms.py
-from django import forms
-from endoreg_db.models import ActiveModel
-
-class ActiveModelForm(forms.ModelForm):
-    class Meta:
-        model = ActiveModel
-        fields = ["model_meta"]  # Or list the specific fields you want to include in the form.
+# forms.py
+from django import forms
+from endoreg_db.models import ActiveModel
+
+class ActiveModelForm(forms.ModelForm):
+    class Meta:
+        model = ActiveModel
+        fields = ["model_meta"]  # Or list the specific fields you want to include in the form.

endoreg_db/forms/unit.py

@@ -1,6 +1,6 @@
-from django import forms
-from ..models import Unit
-
-class UnitForm(forms.Form):
-    class Meta:
+from django import forms
+from ..models import Unit
+
+class UnitForm(forms.Form):
+    class Meta:
         model = Unit

endoreg_db/management/commands/_load_model_template.py

@@ -1,41 +1,41 @@
-from django.conf import settings
-from django.core.management.base import BaseCommand
-from reports.models import Intervention, InterventionType  # Replace 'your_app_name' with the actual app name
-import os
-from reports.dataloader_utils import load_model_data
-
-SOURCE_DIR = None # e.g. settings.DATA_DIR_INTERVENTION
-
-IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
-]
-
-IMPORT_METADATA = {
-    # "": { # same as model name in "import models", e.g. "Intervention"
-    #     "dir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
-    #     "model": None, # e.g. Intervention
-    #     "foreign_keys": [], # e.g. ["intervention_types"]
-    #     "foreign_key_models": [] # e.g. [InterventionType]
-    # },
-}
-
-class Command(BaseCommand):
-    help = """Load all .yaml files in the data/intervention directory
-    into the Intervention and InterventionType model"""
-
-    def add_arguments(self, parser):
-        parser.add_argument(
-            '--verbose',
-            action='store_true',
-            help='Display verbose output',
-        )
-
-    def handle(self, *args, **options):
-        verbose = options['verbose']
-        for model_name in IMPORT_MODELS:
-            _metadata = IMPORT_METADATA[model_name]
-            load_model_data(
-                self,
-                model_name,
-                _metadata,
-                verbose
+from django.conf import settings
+from django.core.management.base import BaseCommand
+from reports.models import Intervention, InterventionType  # Replace 'your_app_name' with the actual app name
+import os
+from reports.dataloader_utils import load_model_data
+
+SOURCE_DIR = None # e.g. settings.DATA_DIR_INTERVENTION
+
+IMPORT_MODELS = [ # string as model key, serves as key in IMPORT_METADATA
+]
+
+IMPORT_METADATA = {
+    # "": { # same as model name in "import models", e.g. "Intervention"
+    #     "dir": os.path.join(SOURCE_DIR,""), # e.g. "interventions"
+    #     "model": None, # e.g. Intervention
+    #     "foreign_keys": [], # e.g. ["intervention_types"]
+    #     "foreign_key_models": [] # e.g. [InterventionType]
+    # },
+}
+
+class Command(BaseCommand):
+    help = """Load all .yaml files in the data/intervention directory
+    into the Intervention and InterventionType model"""
+
+    def add_arguments(self, parser):
+        parser.add_argument(
+            '--verbose',
+            action='store_true',
+            help='Display verbose output',
+        )
+
+    def handle(self, *args, **options):
+        verbose = options['verbose']
+        for model_name in IMPORT_MODELS:
+            _metadata = IMPORT_METADATA[model_name]
+            load_model_data(
+                self,
+                model_name,
+                _metadata,
+                verbose
             )

endoreg_db/management/commands/delete_all.py

@@ -1,18 +1,18 @@
-from django.core.management.base import BaseCommand
-from django.apps import apps
-from django.db import transaction
-
-class Command(BaseCommand):
-    help = 'Deletes all objects from all models in the "endoreg_db" app.'
-
-    def handle(self, *args, **options):
-        app_models = apps.get_models()
-        app_models = [model for model in app_models if "endoreg_db" in model._meta.app_label]  # Filter models by the "endoreg_db" app
-        for model in app_models:
-            with transaction.atomic():  # Use a separate transaction for each model
-                try:
-                    model.objects.all().delete()
-                    self.stdout.write(self.style.SUCCESS(f'Successfully deleted all objects in {model._meta.db_table}'))
-                except Exception as e:
-                    # This catches exceptions and continues with the next model
-                    self.stdout.write(self.style.ERROR(f'Error deleting objects in {model._meta.db_table}: {e}'))
+from django.core.management.base import BaseCommand
+from django.apps import apps
+from django.db import transaction
+
+class Command(BaseCommand):
+    help = 'Deletes all objects from all models in the "endoreg_db" app.'
+
+    def handle(self, *args, **options):
+        app_models = apps.get_models()
+        app_models = [model for model in app_models if "endoreg_db" in model._meta.app_label]  # Filter models by the "endoreg_db" app
+        for model in app_models:
+            with transaction.atomic():  # Use a separate transaction for each model
+                try:
+                    model.objects.all().delete()
+                    self.stdout.write(self.style.SUCCESS(f'Successfully deleted all objects in {model._meta.db_table}'))
+                except Exception as e:
+                    # This catches exceptions and continues with the next model
+                    self.stdout.write(self.style.ERROR(f'Error deleting objects in {model._meta.db_table}: {e}'))

endoreg_db/management/commands/delete_legacy_images.py

@@ -1,19 +1,19 @@
-# django command to delete all LegacyImage objects
-
-from django.core.management.base import BaseCommand, CommandError
-from endoreg_db.models import LegacyImage
-from tqdm import tqdm
-
-class Command(BaseCommand):
-    help = 'Deletes all LegacyImage objects including the linked files (legacy_image.image)'
-
-    def handle(self, *args, **options):
-        legacy_images = LegacyImage.objects.all()
-
-        for legacy_image in tqdm(legacy_images):
-            legacy_image.image.delete()
-            legacy_image.delete()
-
-        self.stdout.write(self.style.SUCCESS('Successfully deleted all LegacyImage objects and linked image files'))
-
-
+# django command to delete all LegacyImage objects
+
+from django.core.management.base import BaseCommand, CommandError
+from endoreg_db.models import LegacyImage
+from tqdm import tqdm
+
+class Command(BaseCommand):
+    help = 'Deletes all LegacyImage objects including the linked files (legacy_image.image)'
+
+    def handle(self, *args, **options):
+        legacy_images = LegacyImage.objects.all()
+
+        for legacy_image in tqdm(legacy_images):
+            legacy_image.image.delete()
+            legacy_image.delete()
+
+        self.stdout.write(self.style.SUCCESS('Successfully deleted all LegacyImage objects and linked image files'))
+
+