endoreg-db 0.3.4__py3-none-any.whl → 0.3.6__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (350) hide show
  1. endoreg_db/admin.py +3 -3
  2. endoreg_db/apps.py +6 -6
  3. endoreg_db/data/__init__.py +65 -16
  4. endoreg_db/data/active_model/data.yaml +2 -2
  5. endoreg_db/data/case_template/rule/00_patient_lab_sample_add_default_value.yaml +167 -0
  6. endoreg_db/data/case_template/rule/01_patient-set-age.yaml +8 -0
  7. endoreg_db/data/case_template/rule/01_patient-set-gender.yaml +9 -0
  8. endoreg_db/data/case_template/rule/11_create_patient_lab_sample.yaml +23 -0
  9. endoreg_db/data/case_template/rule/12_create-patient_medication-anticoagulation.yaml +19 -0
  10. endoreg_db/data/case_template/rule/13_create-patient_medication_schedule-anticoagulation.yaml +19 -0
  11. endoreg_db/data/case_template/rule/19_create_patient.yaml +17 -0
  12. endoreg_db/data/case_template/rule_type/base_types.yaml +35 -0
  13. endoreg_db/data/case_template/rule_value_type/base_types.yaml +59 -0
  14. endoreg_db/data/case_template/template/base.yaml +8 -0
  15. endoreg_db/data/case_template/template_type/pre_endoscopy.yaml +3 -0
  16. endoreg_db/data/case_template/tmp/_rule_value +13 -0
  17. endoreg_db/data/case_template/tmp/rule/01_atrial_fibrillation.yaml +21 -0
  18. endoreg_db/data/case_template/tmp/rule/02_create_object.yaml +10 -0
  19. endoreg_db/data/case_template/tmp/template/atrial_fibrillation_low_risk.yaml +7 -0
  20. endoreg_db/data/center/data.yaml +60 -52
  21. endoreg_db/data/center_resource/green_endoscopy_dashboard_CenterResource.yaml +144 -0
  22. endoreg_db/data/center_waste/green_endoscopy_dashboard_CenterWaste.yaml +48 -0
  23. endoreg_db/data/disease/cardiovascular.yaml +37 -0
  24. endoreg_db/data/disease/hepatology.yaml +5 -0
  25. endoreg_db/data/disease/misc.yaml +6 -0
  26. endoreg_db/data/disease/renal.yaml +5 -0
  27. endoreg_db/data/disease_classification/chronic_kidney_disease.yaml +6 -0
  28. endoreg_db/data/disease_classification/coronary_vessel_disease.yaml +6 -0
  29. endoreg_db/data/disease_classification_choice/chronic_kidney_disease.yaml +41 -0
  30. endoreg_db/data/disease_classification_choice/coronary_vessel_disease.yaml +20 -0
  31. endoreg_db/data/distribution/date/patient.yaml +7 -0
  32. endoreg_db/data/distribution/single_categorical/patient.yaml +7 -0
  33. endoreg_db/data/emission_factor/green_endoscopy_dashboard_EmissionFactor.yaml +132 -0
  34. endoreg_db/data/endoscope_type/data.yaml +10 -10
  35. endoreg_db/data/endoscopy_processor/data.yaml +45 -45
  36. endoreg_db/data/event/cardiology.yaml +28 -0
  37. endoreg_db/data/event/neurology.yaml +14 -0
  38. endoreg_db/data/event/surgery.yaml +13 -0
  39. endoreg_db/data/event/thrombembolism.yaml +20 -0
  40. endoreg_db/data/examination/examinations/data.yaml +65 -16
  41. endoreg_db/data/examination/time/data.yaml +47 -47
  42. endoreg_db/data/examination/time-type/data.yaml +7 -7
  43. endoreg_db/data/examination/type/data.yaml +5 -5
  44. endoreg_db/data/gender/data.yaml +18 -0
  45. endoreg_db/data/information_source/data.yaml +30 -30
  46. endoreg_db/data/information_source/medication.yaml +6 -0
  47. endoreg_db/data/lab_value/cardiac_enzymes.yaml +31 -0
  48. endoreg_db/data/lab_value/coagulation.yaml +49 -0
  49. endoreg_db/data/lab_value/electrolytes.yaml +190 -0
  50. endoreg_db/data/lab_value/gastrointestinal_function.yaml +121 -0
  51. endoreg_db/data/lab_value/hematology.yaml +169 -0
  52. endoreg_db/data/lab_value/hormones.yaml +53 -0
  53. endoreg_db/data/lab_value/lipids.yaml +44 -0
  54. endoreg_db/data/lab_value/misc.yaml +30 -0
  55. endoreg_db/data/lab_value/renal_function.yaml +11 -0
  56. endoreg_db/data/label/label/data.yaml +62 -62
  57. endoreg_db/data/label/label-set/data.yaml +17 -17
  58. endoreg_db/data/label/label-type/data.yaml +6 -6
  59. endoreg_db/data/material/material.yaml +91 -0
  60. endoreg_db/data/medication/anticoagulation.yaml +65 -0
  61. endoreg_db/data/medication/tah.yaml +70 -0
  62. endoreg_db/data/medication_indication/anticoagulation.yaml +120 -0
  63. endoreg_db/data/medication_indication_type/data.yaml +11 -0
  64. endoreg_db/data/medication_indication_type/thrombembolism.yaml +41 -0
  65. endoreg_db/data/medication_intake_time/base.yaml +31 -0
  66. endoreg_db/data/medication_schedule/apixaban.yaml +95 -0
  67. endoreg_db/data/medication_schedule/ass.yaml +12 -0
  68. endoreg_db/data/medication_schedule/enoxaparin.yaml +26 -0
  69. endoreg_db/data/model_type/data.yaml +6 -6
  70. endoreg_db/data/patient_lab_sample_type/generic.yaml +6 -0
  71. endoreg_db/data/pdf_type/data.yaml +28 -28
  72. endoreg_db/data/product/green_endoscopy_dashboard_Product.yaml +66 -0
  73. endoreg_db/data/product_group/green_endoscopy_dashboard_ProductGroup.yaml +33 -0
  74. endoreg_db/data/product_material/green_endoscopy_dashboard_ProductMaterial.yaml +308 -0
  75. endoreg_db/data/product_weight/green_endoscopy_dashboard_ProductWeight.yaml +88 -0
  76. endoreg_db/data/profession/data.yaml +70 -70
  77. endoreg_db/data/reference_product/green_endoscopy_dashboard_ReferenceProduct.yaml +55 -0
  78. endoreg_db/data/report_reader_flag/ukw-examination-generic.yaml +26 -26
  79. endoreg_db/data/report_reader_flag/ukw-histology-generic.yaml +19 -19
  80. endoreg_db/data/resource/green_endoscopy_dashboard_Resource.yaml +15 -0
  81. endoreg_db/data/tmp/chronic_kidney_disease.yaml +0 -0
  82. endoreg_db/data/tmp/congestive_heart_failure.yaml +0 -0
  83. endoreg_db/data/transport_route/green_endoscopy_dashboard_TransportRoute.yaml +12 -0
  84. endoreg_db/data/unit/concentration.yaml +92 -0
  85. endoreg_db/data/unit/data.yaml +17 -17
  86. endoreg_db/data/unit/length.yaml +30 -30
  87. endoreg_db/data/unit/misc.yaml +20 -0
  88. endoreg_db/data/unit/rate.yaml +6 -0
  89. endoreg_db/data/unit/time.yaml +13 -0
  90. endoreg_db/data/unit/volume.yaml +35 -26
  91. endoreg_db/data/unit/weight.yaml +37 -30
  92. endoreg_db/data/waste/data.yaml +12 -0
  93. endoreg_db/forms/__init__.py +2 -2
  94. endoreg_db/forms/questionnaires/tto_questionnaire.py +23 -23
  95. endoreg_db/forms/settings/__init__.py +8 -8
  96. endoreg_db/forms/unit.py +5 -5
  97. endoreg_db/management/commands/_load_model_template.py +40 -40
  98. endoreg_db/management/commands/delete_all.py +18 -18
  99. endoreg_db/management/commands/delete_legacy_images.py +19 -19
  100. endoreg_db/management/commands/delete_legacy_videos.py +16 -16
  101. endoreg_db/management/commands/extract_legacy_video_frames.py +18 -18
  102. endoreg_db/management/commands/fetch_legacy_image_dataset.py +32 -32
  103. endoreg_db/management/commands/fix_auth_permission.py +20 -20
  104. endoreg_db/management/commands/import_legacy_images.py +94 -94
  105. endoreg_db/management/commands/import_legacy_videos.py +76 -76
  106. endoreg_db/management/commands/load_active_model_data.py +44 -44
  107. endoreg_db/management/commands/load_ai_model_data.py +44 -44
  108. endoreg_db/management/commands/load_base_db_data.py +128 -71
  109. endoreg_db/management/commands/load_center_data.py +42 -42
  110. endoreg_db/management/commands/load_disease_classification_choices_data.py +41 -0
  111. endoreg_db/management/commands/load_disease_classification_data.py +41 -0
  112. endoreg_db/management/commands/load_disease_data.py +40 -0
  113. endoreg_db/management/commands/load_distribution_data.py +66 -0
  114. endoreg_db/management/commands/load_endoscope_type_data.py +44 -44
  115. endoreg_db/management/commands/load_endoscopy_processor_data.py +44 -44
  116. endoreg_db/management/commands/load_event_data.py +41 -0
  117. endoreg_db/management/commands/load_examination_data.py +74 -74
  118. endoreg_db/management/commands/load_g_play_data.py +113 -0
  119. endoreg_db/management/commands/load_gender_data.py +44 -0
  120. endoreg_db/management/commands/load_green_endoscopy_wuerzburg_data.py +133 -0
  121. endoreg_db/management/commands/load_information_source.py +44 -44
  122. endoreg_db/management/commands/load_lab_value_data.py +50 -0
  123. endoreg_db/management/commands/load_label_data.py +66 -66
  124. endoreg_db/management/commands/load_medication_data.py +41 -0
  125. endoreg_db/management/commands/load_medication_indication_data.py +63 -0
  126. endoreg_db/management/commands/load_medication_indication_type_data.py +41 -0
  127. endoreg_db/management/commands/load_medication_intake_time_data.py +41 -0
  128. endoreg_db/management/commands/load_medication_schedule_data.py +55 -0
  129. endoreg_db/management/commands/load_pdf_type_data.py +60 -60
  130. endoreg_db/management/commands/load_profession_data.py +43 -43
  131. endoreg_db/management/commands/load_report_reader_flag.py +45 -45
  132. endoreg_db/management/commands/load_unit_data.py +45 -45
  133. endoreg_db/management/commands/load_user_groups.py +28 -28
  134. endoreg_db/management/commands/register_ai_model.py +65 -65
  135. endoreg_db/management/commands/reset_celery_schedule.py +9 -9
  136. endoreg_db/migrations/0001_initial.py +582 -582
  137. endoreg_db/migrations/0002_rawvideofile.py +26 -26
  138. endoreg_db/migrations/0003_rawvideofile_frames_required.py +18 -18
  139. endoreg_db/migrations/0004_rename_hash_rawvideofile_video_hash.py +18 -18
  140. endoreg_db/migrations/0005_ffmpegmeta_remove_videoimportmeta_center_and_more.py +56 -56
  141. endoreg_db/migrations/0006_rawvideofile_center_alter_videometa_processor.py +25 -25
  142. endoreg_db/migrations/0007_rawvideofile_processor.py +19 -19
  143. endoreg_db/migrations/0008_rename_frames_required_rawvideofile_state_frames_required.py +18 -18
  144. endoreg_db/migrations/0009_sensitivemeta_rawvideofile_sensitive_meta.py +31 -31
  145. endoreg_db/migrations/0010_rename_endoscope_serial_number_sensitivemeta_endoscope_sn.py +18 -18
  146. endoreg_db/migrations/0011_rawvideofile_state_sensitive_data_retrieved.py +18 -18
  147. endoreg_db/migrations/0012_rawvideofile_prediction_dir_and_more.py +109 -109
  148. endoreg_db/migrations/0013_rawpdffile.py +31 -31
  149. endoreg_db/migrations/0014_pdftype_alter_rawpdffile_file_pdfmeta.py +38 -38
  150. endoreg_db/migrations/0015_rename_report_processed_rawpdffile_state_report_processed_and_more.py +31 -31
  151. endoreg_db/migrations/0016_rawpdffile_state_report_processing_required.py +18 -18
  152. endoreg_db/migrations/0017_firstname_lastname_center_first_names_and_more.py +37 -37
  153. endoreg_db/migrations/0018_reportreaderflag_reportreaderconfig.py +37 -37
  154. endoreg_db/migrations/0019_pdftype_cut_off_above_lines_and_more.py +42 -42
  155. endoreg_db/migrations/0020_rename_endoscopy_info_line_pdftype_endoscope_info_line.py +18 -18
  156. endoreg_db/migrations/0021_alter_pdftype_endoscope_info_line.py +19 -19
  157. endoreg_db/migrations/0022_alter_pdftype_endoscope_info_line.py +19 -19
  158. endoreg_db/migrations/0023_ttoquestionnaire_alter_pdftype_endoscope_info_line.py +59 -59
  159. endoreg_db/migrations/0024_remove_ttoquestionnaire_infections_and_more.py +27 -27
  160. endoreg_db/migrations/0025_event_alter_rawpdffile_file_patientevent.py +42 -0
  161. endoreg_db/migrations/0026_disease_diseaseclassification_and_more.py +166 -0
  162. endoreg_db/migrations/0027_labvalue_abbreviation_labvalue_default_normal_range_and_more.py +38 -0
  163. endoreg_db/migrations/0028_alter_unit_abbreviation.py +18 -0
  164. endoreg_db/migrations/0029_medicationintaketime_and_more.py +75 -0
  165. endoreg_db/migrations/0030_medicationindicationtype_and_more.py +101 -0
  166. endoreg_db/migrations/0031_rename_adapt_to_liver_function_medication_adapt_to_age_and_more.py +38 -0
  167. endoreg_db/migrations/0032_alter_medicationschedule_therapy_duration_d.py +18 -0
  168. endoreg_db/migrations/0033_medicationindication_sources.py +18 -0
  169. endoreg_db/migrations/0034_alter_rawpdffile_file.py +20 -0
  170. endoreg_db/migrations/0035_alter_medicationindication_sources.py +18 -0
  171. endoreg_db/migrations/0036_alter_rawpdffile_file.py +20 -0
  172. endoreg_db/migrations/0037_alter_medicationindication_sources.py +18 -0
  173. endoreg_db/migrations/0038_emissionfactor_material_product_productgroup_and_more.py +164 -0
  174. endoreg_db/migrations/0039_referenceproduct_name.py +19 -0
  175. endoreg_db/migrations/0040_quizanswertype_quizquestiontype_quizquestion_and_more.py +50 -0
  176. endoreg_db/migrations/0041_gender_patientmedication_medication_indication_and_more.py +40 -0
  177. endoreg_db/migrations/0042_casetemplateruletype_casetemplaterulevalue_and_more.py +74 -0
  178. endoreg_db/migrations/0043_casetemplatetype_name_de_casetemplatetype_name_en.py +23 -0
  179. endoreg_db/migrations/0044_casetemplateruletype_name_de_and_more.py +23 -0
  180. endoreg_db/migrations/0045_casetemplaterulevalue_value_type.py +19 -0
  181. endoreg_db/migrations/0046_casetemplaterulevalue_target_field.py +18 -0
  182. endoreg_db/migrations/0047_casetemplaterule_target_model.py +18 -0
  183. endoreg_db/migrations/0048_remove_casetemplaterule_chained_rules_and_more.py +22 -0
  184. endoreg_db/migrations/0049_remove_casetemplaterule_rule_values.py +17 -0
  185. endoreg_db/migrations/0050_casetemplaterule_rule_values.py +18 -0
  186. endoreg_db/migrations/0051_remove_casetemplaterule_calling_rules_and_more.py +27 -0
  187. endoreg_db/migrations/0052_rename_case_template_type_casetemplate_template_type.py +18 -0
  188. endoreg_db/migrations/0053_patientlabsampletype_patientlabsample_and_more.py +38 -0
  189. endoreg_db/migrations/0054_multiplecategoricalvaluedistribution_and_more.py +69 -0
  190. endoreg_db/migrations/0055_remove_casetemplaterule_rule_values_and_more.py +59 -0
  191. endoreg_db/migrations/0056_datevaluedistribution_and_more.py +32 -0
  192. endoreg_db/migrations/0057_remove_datevaluedistribution_max_date_and_more.py +72 -0
  193. endoreg_db/migrations/0058_datevaluedistribution_description_and_more.py +28 -0
  194. endoreg_db/migrations/0059_casetemplaterule_rule_values.py +18 -0
  195. endoreg_db/migrations/0060_labvalue__default_date_value_distribution_and_more.py +44 -0
  196. endoreg_db/migrations/0061_remove_patientlabvalue_date_patientlabvalue_datetime.py +24 -0
  197. endoreg_db/migrations/0062_labvalue_numeric_precision.py +18 -0
  198. endoreg_db/migrations/0063_alter_labvalue_numeric_precision.py +18 -0
  199. endoreg_db/migrations/0064_casetemplaterule_extra_parameters_and_more.py +23 -0
  200. endoreg_db/migrations/0065_rename__date_value_distribution_casetemplaterule_date_value_distribution_and_more.py +58 -0
  201. endoreg_db/migrations/0066_alter_patientlabvalue_patient_and_more.py +29 -0
  202. endoreg_db/migrations/0067_alter_medicationindication_indication_type.py +19 -0
  203. endoreg_db/models/__init__.py +74 -57
  204. endoreg_db/models/ai_model/__init__.py +3 -3
  205. endoreg_db/models/ai_model/active_model.py +9 -9
  206. endoreg_db/models/ai_model/model_meta.py +24 -24
  207. endoreg_db/models/ai_model/model_type.py +25 -25
  208. endoreg_db/models/ai_model/utils.py +8 -8
  209. endoreg_db/models/annotation/__init__.py +1 -1
  210. endoreg_db/models/annotation/binary_classification_annotation_task.py +80 -80
  211. endoreg_db/models/annotation/image_classification.py +26 -26
  212. endoreg_db/models/case_template/__init__.py +6 -0
  213. endoreg_db/models/case_template/case_template.py +81 -0
  214. endoreg_db/models/case_template/case_template_rule.py +276 -0
  215. endoreg_db/models/case_template/case_template_rule_value.py +73 -0
  216. endoreg_db/models/case_template/case_template_type.py +28 -0
  217. endoreg_db/models/center/__init__.py +4 -0
  218. endoreg_db/models/{center.py → center/center.py} +24 -24
  219. endoreg_db/models/center/center_product.py +34 -0
  220. endoreg_db/models/center/center_resource.py +19 -0
  221. endoreg_db/models/center/center_waste.py +11 -0
  222. endoreg_db/models/data_file/__init__.py +5 -5
  223. endoreg_db/models/data_file/base_classes/__init__.py +2 -2
  224. endoreg_db/models/data_file/base_classes/abstract_frame.py +50 -50
  225. endoreg_db/models/data_file/base_classes/abstract_video.py +200 -200
  226. endoreg_db/models/data_file/frame.py +45 -45
  227. endoreg_db/models/data_file/import_classes/__init__.py +31 -31
  228. endoreg_db/models/data_file/import_classes/processing_functions/__init__.py +34 -34
  229. endoreg_db/models/data_file/import_classes/processing_functions/pdf.py +28 -28
  230. endoreg_db/models/data_file/import_classes/processing_functions/video.py +260 -260
  231. endoreg_db/models/data_file/import_classes/raw_pdf.py +188 -185
  232. endoreg_db/models/data_file/import_classes/raw_video.py +343 -343
  233. endoreg_db/models/data_file/metadata/__init__.py +3 -3
  234. endoreg_db/models/data_file/metadata/pdf_meta.py +70 -70
  235. endoreg_db/models/data_file/metadata/sensitive_meta.py +31 -31
  236. endoreg_db/models/data_file/metadata/video_meta.py +132 -131
  237. endoreg_db/models/data_file/report_file.py +89 -89
  238. endoreg_db/models/data_file/video/__init__.py +6 -6
  239. endoreg_db/models/data_file/video/import_meta.py +25 -25
  240. endoreg_db/models/data_file/video/video.py +25 -25
  241. endoreg_db/models/data_file/video_segment.py +107 -107
  242. endoreg_db/models/disease.py +56 -0
  243. endoreg_db/models/emission/__init__.py +1 -0
  244. endoreg_db/models/emission/emission_factor.py +20 -0
  245. endoreg_db/models/event.py +22 -0
  246. endoreg_db/models/examination/__init__.py +3 -3
  247. endoreg_db/models/examination/examination.py +26 -26
  248. endoreg_db/models/examination/examination_time.py +27 -27
  249. endoreg_db/models/examination/examination_time_type.py +24 -24
  250. endoreg_db/models/examination/examination_type.py +18 -18
  251. endoreg_db/models/hardware/__init__.py +1 -1
  252. endoreg_db/models/hardware/endoscope.py +44 -44
  253. endoreg_db/models/hardware/endoscopy_processor.py +143 -143
  254. endoreg_db/models/information_source.py +29 -22
  255. endoreg_db/models/label/label.py +84 -84
  256. endoreg_db/models/laboratory/__init__.py +1 -0
  257. endoreg_db/models/laboratory/lab_value.py +102 -0
  258. endoreg_db/models/legacy_data/__init__.py +3 -3
  259. endoreg_db/models/legacy_data/image.py +34 -34
  260. endoreg_db/models/medication/__init__.py +1 -0
  261. endoreg_db/models/medication/medication.py +148 -0
  262. endoreg_db/models/other/__init__.py +5 -0
  263. endoreg_db/models/other/distribution.py +215 -0
  264. endoreg_db/models/other/material.py +16 -0
  265. endoreg_db/models/other/resource.py +18 -0
  266. endoreg_db/models/other/transport_route.py +21 -0
  267. endoreg_db/models/other/waste.py +20 -0
  268. endoreg_db/models/patient_examination/__init__.py +35 -35
  269. endoreg_db/models/permissions/__init__.py +44 -44
  270. endoreg_db/models/persons/__init__.py +7 -6
  271. endoreg_db/models/persons/examiner/__init__.py +1 -1
  272. endoreg_db/models/persons/examiner/examiner.py +15 -15
  273. endoreg_db/models/persons/examiner/examiner_type.py +1 -1
  274. endoreg_db/models/persons/first_name.py +17 -17
  275. endoreg_db/models/persons/gender.py +22 -0
  276. endoreg_db/models/persons/last_name.py +19 -19
  277. endoreg_db/models/persons/patient/__init__.py +8 -0
  278. endoreg_db/models/persons/patient/case/__init__.py +0 -0
  279. endoreg_db/models/persons/patient/case/case.py +30 -0
  280. endoreg_db/models/persons/patient/patient.py +216 -0
  281. endoreg_db/models/persons/patient/patient_disease.py +16 -0
  282. endoreg_db/models/persons/patient/patient_event.py +22 -0
  283. endoreg_db/models/persons/patient/patient_lab_sample.py +106 -0
  284. endoreg_db/models/persons/patient/patient_lab_value.py +176 -0
  285. endoreg_db/models/persons/patient/patient_medication.py +44 -0
  286. endoreg_db/models/persons/patient/patient_medication_schedule.py +28 -0
  287. endoreg_db/models/persons/person.py +31 -34
  288. endoreg_db/models/persons/portal_user_information.py +27 -29
  289. endoreg_db/models/prediction/__init__.py +1 -1
  290. endoreg_db/models/prediction/image_classification.py +37 -37
  291. endoreg_db/models/prediction/video_prediction_meta.py +244 -244
  292. endoreg_db/models/product/__init__.py +5 -0
  293. endoreg_db/models/product/product.py +97 -0
  294. endoreg_db/models/product/product_group.py +19 -0
  295. endoreg_db/models/product/product_material.py +24 -0
  296. endoreg_db/models/product/product_weight.py +26 -0
  297. endoreg_db/models/product/reference_product.py +99 -0
  298. endoreg_db/models/questionnaires/__init__.py +114 -114
  299. endoreg_db/models/quiz/__init__.py +2 -0
  300. endoreg_db/models/quiz/quiz_answer.py +41 -0
  301. endoreg_db/models/quiz/quiz_question.py +54 -0
  302. endoreg_db/models/report_reader/__init__.py +1 -1
  303. endoreg_db/models/report_reader/report_reader_config.py +53 -53
  304. endoreg_db/models/report_reader/report_reader_flag.py +19 -19
  305. endoreg_db/models/rules/__init__.py +5 -0
  306. endoreg_db/models/rules/rule.py +24 -0
  307. endoreg_db/models/rules/rule_applicator.py +224 -0
  308. endoreg_db/models/rules/rule_attribute_dtype.py +19 -0
  309. endoreg_db/models/rules/rule_type.py +22 -0
  310. endoreg_db/models/rules/ruleset.py +19 -0
  311. endoreg_db/models/unit.py +21 -19
  312. endoreg_db/queries/__init__.py +4 -4
  313. endoreg_db/queries/annotations/__init__.py +2 -2
  314. endoreg_db/queries/annotations/legacy.py +159 -159
  315. endoreg_db/queries/get/__init__.py +5 -5
  316. endoreg_db/queries/get/center.py +42 -42
  317. endoreg_db/queries/get/model.py +13 -13
  318. endoreg_db/queries/get/patient.py +14 -14
  319. endoreg_db/queries/get/patient_examination.py +20 -20
  320. endoreg_db/queries/get/report_file.py +33 -33
  321. endoreg_db/queries/get/video.py +31 -31
  322. endoreg_db/serializers/__init__.py +9 -9
  323. endoreg_db/serializers/ai_model.py +18 -18
  324. endoreg_db/serializers/annotation.py +17 -17
  325. endoreg_db/serializers/center.py +11 -11
  326. endoreg_db/serializers/examination.py +32 -32
  327. endoreg_db/serializers/frame.py +13 -13
  328. endoreg_db/serializers/hardware.py +20 -20
  329. endoreg_db/serializers/label.py +22 -22
  330. endoreg_db/serializers/patient.py +10 -10
  331. endoreg_db/serializers/prediction.py +15 -15
  332. endoreg_db/serializers/report_file.py +7 -7
  333. endoreg_db/serializers/video.py +27 -27
  334. endoreg_db/tests.py +3 -3
  335. endoreg_db/utils/cropping.py +28 -28
  336. endoreg_db/utils/dataloader.py +92 -185
  337. endoreg_db/utils/file_operations.py +30 -30
  338. endoreg_db/utils/hashs.py +33 -33
  339. endoreg_db/utils/legacy_ocr.py +201 -201
  340. endoreg_db/utils/ocr.py +197 -197
  341. endoreg_db/utils/uuid.py +4 -4
  342. endoreg_db/utils/video_metadata.py +87 -87
  343. endoreg_db/views.py +3 -3
  344. {endoreg_db-0.3.4.dist-info → endoreg_db-0.3.6.dist-info}/LICENSE +674 -674
  345. {endoreg_db-0.3.4.dist-info → endoreg_db-0.3.6.dist-info}/METADATA +2 -2
  346. endoreg_db-0.3.6.dist-info/RECORD +357 -0
  347. {endoreg_db-0.3.4.dist-info → endoreg_db-0.3.6.dist-info}/WHEEL +1 -1
  348. endoreg_db/models/persons/patient.py +0 -58
  349. endoreg_db/models.py +0 -3
  350. endoreg_db-0.3.4.dist-info/RECORD +0 -185
@@ -1,582 +1,582 @@
1
- # Generated by Django 4.2.10 on 2024-02-13 22:19
2
-
3
- from django.conf import settings
4
- from django.db import migrations, models
5
- import django.db.models.deletion
6
-
7
-
8
- class Migration(migrations.Migration):
9
-
10
- initial = True
11
-
12
- dependencies = [
13
- migrations.swappable_dependency(settings.AUTH_USER_MODEL),
14
- ]
15
-
16
- operations = [
17
- migrations.CreateModel(
18
- name='Center',
19
- fields=[
20
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
21
- ('name', models.CharField(max_length=255)),
22
- ('name_de', models.CharField(blank=True, max_length=255, null=True)),
23
- ('name_en', models.CharField(blank=True, max_length=255, null=True)),
24
- ],
25
- ),
26
- migrations.CreateModel(
27
- name='Endoscope',
28
- fields=[
29
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
30
- ('name', models.CharField(max_length=255)),
31
- ('sn', models.CharField(max_length=255)),
32
- ],
33
- options={
34
- 'verbose_name': 'Endoscope',
35
- 'verbose_name_plural': 'Endoscopes',
36
- 'ordering': ['name'],
37
- },
38
- ),
39
- migrations.CreateModel(
40
- name='EndoscopeType',
41
- fields=[
42
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
43
- ('name', models.CharField(max_length=255)),
44
- ('name_de', models.CharField(blank=True, max_length=255, null=True)),
45
- ('name_en', models.CharField(blank=True, max_length=255, null=True)),
46
- ],
47
- options={
48
- 'verbose_name': 'Endoscope Type',
49
- 'verbose_name_plural': 'Endoscope Types',
50
- 'ordering': ['name'],
51
- },
52
- ),
53
- migrations.CreateModel(
54
- name='EndoscopyProcessor',
55
- fields=[
56
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
57
- ('name', models.CharField(max_length=255)),
58
- ('image_width', models.IntegerField()),
59
- ('image_height', models.IntegerField()),
60
- ('endoscope_image_x', models.IntegerField()),
61
- ('endoscope_image_y', models.IntegerField()),
62
- ('endoscope_image_width', models.IntegerField()),
63
- ('endoscope_image_height', models.IntegerField()),
64
- ('examination_date_x', models.IntegerField()),
65
- ('examination_date_y', models.IntegerField()),
66
- ('examination_date_width', models.IntegerField()),
67
- ('examination_date_height', models.IntegerField()),
68
- ('examination_time_x', models.IntegerField(blank=True, null=True)),
69
- ('examination_time_y', models.IntegerField(blank=True, null=True)),
70
- ('examination_time_width', models.IntegerField(blank=True, null=True)),
71
- ('examination_time_height', models.IntegerField(blank=True, null=True)),
72
- ('patient_first_name_x', models.IntegerField()),
73
- ('patient_first_name_y', models.IntegerField()),
74
- ('patient_first_name_width', models.IntegerField()),
75
- ('patient_first_name_height', models.IntegerField()),
76
- ('patient_last_name_x', models.IntegerField()),
77
- ('patient_last_name_y', models.IntegerField()),
78
- ('patient_last_name_width', models.IntegerField()),
79
- ('patient_last_name_height', models.IntegerField()),
80
- ('patient_dob_x', models.IntegerField()),
81
- ('patient_dob_y', models.IntegerField()),
82
- ('patient_dob_width', models.IntegerField()),
83
- ('patient_dob_height', models.IntegerField()),
84
- ('endoscope_type_x', models.IntegerField(blank=True, null=True)),
85
- ('endoscope_type_y', models.IntegerField(blank=True, null=True)),
86
- ('endoscope_type_width', models.IntegerField(blank=True, null=True)),
87
- ('endoscope_type_height', models.IntegerField(blank=True, null=True)),
88
- ('endoscope_sn_x', models.IntegerField(blank=True, null=True)),
89
- ('endoscope_sn_y', models.IntegerField(blank=True, null=True)),
90
- ('endoscope_sn_width', models.IntegerField(blank=True, null=True)),
91
- ('endoscope_sn_height', models.IntegerField(blank=True, null=True)),
92
- ],
93
- ),
94
- migrations.CreateModel(
95
- name='Examination',
96
- fields=[
97
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
98
- ('name', models.CharField(max_length=100, unique=True)),
99
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
100
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
101
- ('date', models.DateField(blank=True, null=True)),
102
- ('time', models.TimeField(blank=True, null=True)),
103
- ],
104
- options={
105
- 'verbose_name': 'Examination',
106
- 'verbose_name_plural': 'Examinations',
107
- 'ordering': ['name'],
108
- },
109
- ),
110
- migrations.CreateModel(
111
- name='ExaminationType',
112
- fields=[
113
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
114
- ('name', models.CharField(max_length=100, unique=True)),
115
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
116
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
117
- ],
118
- ),
119
- migrations.CreateModel(
120
- name='Examiner',
121
- fields=[
122
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
123
- ('first_name', models.CharField(max_length=255)),
124
- ('last_name', models.CharField(max_length=255)),
125
- ('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
126
- ('gender', models.CharField(blank=True, choices=[('Male', 'Male'), ('Female', 'Female'), ('Other', 'Other')], max_length=10, null=True)),
127
- ('email', models.EmailField(blank=True, max_length=255, null=True)),
128
- ('phone', models.CharField(blank=True, max_length=255, null=True)),
129
- ('is_real_person', models.BooleanField(default=True)),
130
- ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
131
- ],
132
- options={
133
- 'abstract': False,
134
- },
135
- ),
136
- migrations.CreateModel(
137
- name='Frame',
138
- fields=[
139
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
140
- ('frame_number', models.IntegerField()),
141
- ('image', models.ImageField(upload_to='frames')),
142
- ('suffix', models.CharField(max_length=255)),
143
- ],
144
- options={
145
- 'abstract': False,
146
- },
147
- ),
148
- migrations.CreateModel(
149
- name='InformationSource',
150
- fields=[
151
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
152
- ('name', models.CharField(max_length=100)),
153
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
154
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
155
- ],
156
- ),
157
- migrations.CreateModel(
158
- name='Label',
159
- fields=[
160
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
161
- ('name', models.CharField(max_length=255)),
162
- ('description', models.TextField(blank=True, null=True)),
163
- ],
164
- ),
165
- migrations.CreateModel(
166
- name='LabelSet',
167
- fields=[
168
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
169
- ('name', models.CharField(max_length=255)),
170
- ('description', models.TextField(blank=True, null=True)),
171
- ('version', models.IntegerField()),
172
- ('labels', models.ManyToManyField(related_name='labels', to='endoreg_db.label')),
173
- ],
174
- ),
175
- migrations.CreateModel(
176
- name='LabelType',
177
- fields=[
178
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
179
- ('name', models.CharField(max_length=255)),
180
- ('description', models.TextField(blank=True, null=True)),
181
- ],
182
- ),
183
- migrations.CreateModel(
184
- name='LegacyImage',
185
- fields=[
186
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
187
- ('image', models.ImageField(upload_to='legacy_images')),
188
- ('suffix', models.CharField(max_length=255)),
189
- ],
190
- ),
191
- migrations.CreateModel(
192
- name='LegacyVideo',
193
- fields=[
194
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
195
- ('video_hash', models.CharField(max_length=255, unique=True)),
196
- ('date', models.DateField(blank=True, null=True)),
197
- ('suffix', models.CharField(max_length=255)),
198
- ('fps', models.FloatField()),
199
- ('duration', models.FloatField()),
200
- ('width', models.IntegerField()),
201
- ('height', models.IntegerField()),
202
- ('endoscope_image_x', models.IntegerField(blank=True, null=True)),
203
- ('endoscope_image_y', models.IntegerField(blank=True, null=True)),
204
- ('endoscope_image_width', models.IntegerField(blank=True, null=True)),
205
- ('endoscope_image_height', models.IntegerField(blank=True, null=True)),
206
- ('frames_extracted', models.BooleanField(default=False)),
207
- ('meta', models.JSONField(blank=True, null=True)),
208
- ('file', models.FileField(blank=True, null=True, upload_to='legacy_videos')),
209
- ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
210
- ('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
211
- ],
212
- options={
213
- 'abstract': False,
214
- },
215
- ),
216
- migrations.CreateModel(
217
- name='ModelMeta',
218
- fields=[
219
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
220
- ('name', models.CharField(max_length=255)),
221
- ('version', models.CharField(max_length=255)),
222
- ('weights', models.FileField(upload_to='weights/')),
223
- ('description', models.TextField(blank=True, null=True)),
224
- ('date_created', models.DateTimeField(auto_now_add=True)),
225
- ('labelset', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.labelset')),
226
- ],
227
- ),
228
- migrations.CreateModel(
229
- name='ModelType',
230
- fields=[
231
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
232
- ('name', models.CharField(max_length=255)),
233
- ('description', models.TextField(blank=True, null=True)),
234
- ],
235
- ),
236
- migrations.CreateModel(
237
- name='Patient',
238
- fields=[
239
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
240
- ('first_name', models.CharField(max_length=255)),
241
- ('last_name', models.CharField(max_length=255)),
242
- ('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
243
- ('gender', models.CharField(blank=True, choices=[('Male', 'Male'), ('Female', 'Female'), ('Other', 'Other')], max_length=10, null=True)),
244
- ('email', models.EmailField(blank=True, max_length=255, null=True)),
245
- ('phone', models.CharField(blank=True, max_length=255, null=True)),
246
- ('is_real_person', models.BooleanField(default=True)),
247
- ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
248
- ],
249
- options={
250
- 'abstract': False,
251
- },
252
- ),
253
- migrations.CreateModel(
254
- name='Profession',
255
- fields=[
256
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
257
- ('name', models.CharField(max_length=100)),
258
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
259
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
260
- ('description', models.TextField(blank=True, null=True)),
261
- ],
262
- ),
263
- migrations.CreateModel(
264
- name='Unit',
265
- fields=[
266
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
267
- ('name', models.CharField(max_length=100)),
268
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
269
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
270
- ('description', models.CharField(blank=True, max_length=100, null=True)),
271
- ('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
272
- ],
273
- ),
274
- migrations.CreateModel(
275
- name='Video',
276
- fields=[
277
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
278
- ('file', models.FileField(blank=True, null=True, upload_to='raw_videos')),
279
- ('video_hash', models.CharField(max_length=255, unique=True)),
280
- ('date', models.DateField(blank=True, null=True)),
281
- ('suffix', models.CharField(max_length=255)),
282
- ('fps', models.FloatField()),
283
- ('duration', models.FloatField()),
284
- ('width', models.IntegerField()),
285
- ('height', models.IntegerField()),
286
- ('endoscope_image_x', models.IntegerField(blank=True, null=True)),
287
- ('endoscope_image_y', models.IntegerField(blank=True, null=True)),
288
- ('endoscope_image_width', models.IntegerField(blank=True, null=True)),
289
- ('endoscope_image_height', models.IntegerField(blank=True, null=True)),
290
- ('frames_extracted', models.BooleanField(default=False)),
291
- ('meta', models.JSONField(blank=True, null=True)),
292
- ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
293
- ('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
294
- ],
295
- options={
296
- 'abstract': False,
297
- },
298
- ),
299
- migrations.CreateModel(
300
- name='VideoPredictionMeta',
301
- fields=[
302
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
303
- ('date_created', models.DateTimeField(auto_now_add=True)),
304
- ('date_modified', models.DateTimeField(auto_now=True)),
305
- ('prediction_array', models.BinaryField(blank=True, null=True)),
306
- ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
307
- ('video', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.video')),
308
- ],
309
- options={
310
- 'abstract': False,
311
- 'unique_together': {('model_meta', 'video')},
312
- },
313
- ),
314
- migrations.CreateModel(
315
- name='VideoImportMeta',
316
- fields=[
317
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
318
- ('video_anonymized', models.BooleanField(default=False)),
319
- ('video_patient_data_detected', models.BooleanField(default=False)),
320
- ('outside_detected', models.BooleanField(default=False)),
321
- ('patient_data_removed', models.BooleanField(default=False)),
322
- ('outside_removed', models.BooleanField(default=False)),
323
- ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
324
- ('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
325
- ('processor', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
326
- ],
327
- ),
328
- migrations.AddField(
329
- model_name='video',
330
- name='import_meta',
331
- field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta'),
332
- ),
333
- migrations.AddField(
334
- model_name='video',
335
- name='patient',
336
- field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
337
- ),
338
- migrations.CreateModel(
339
- name='ReportFile',
340
- fields=[
341
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
342
- ('pdf', models.FileField(blank=True, null=True, upload_to='raw_report_pdfs')),
343
- ('pdf_hash', models.CharField(max_length=255, unique=True)),
344
- ('meta', models.JSONField(blank=True, null=True)),
345
- ('text', models.TextField(blank=True, null=True)),
346
- ('text_anonymized', models.TextField(blank=True, null=True)),
347
- ('date', models.DateField(blank=True, null=True)),
348
- ('time', models.TimeField(blank=True, null=True)),
349
- ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
350
- ('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examiner')),
351
- ('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
352
- ],
353
- ),
354
- migrations.CreateModel(
355
- name='PortalUserInfo',
356
- fields=[
357
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
358
- ('works_in_endoscopy', models.BooleanField(blank=True, null=True)),
359
- ('profession', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.profession')),
360
- ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)),
361
- ],
362
- ),
363
- migrations.CreateModel(
364
- name='PatientExamination',
365
- fields=[
366
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
367
- ('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examination')),
368
- ('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_examinations', to='endoreg_db.patient')),
369
- ('report_file', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.reportfile')),
370
- ('video', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.video')),
371
- ],
372
- options={
373
- 'verbose_name': 'Patient Examination',
374
- 'verbose_name_plural': 'Patient Examinations',
375
- 'ordering': ['patient', 'examination'],
376
- },
377
- ),
378
- migrations.AddField(
379
- model_name='modelmeta',
380
- name='type',
381
- field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.modeltype'),
382
- ),
383
- migrations.CreateModel(
384
- name='LegacyVideoPredictionMeta',
385
- fields=[
386
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
387
- ('date_created', models.DateTimeField(auto_now_add=True)),
388
- ('date_modified', models.DateTimeField(auto_now=True)),
389
- ('prediction_array', models.BinaryField(blank=True, null=True)),
390
- ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
391
- ('video', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.legacyvideo')),
392
- ],
393
- options={
394
- 'abstract': False,
395
- 'unique_together': {('model_meta', 'video')},
396
- },
397
- ),
398
- migrations.AddField(
399
- model_name='legacyvideo',
400
- name='patient',
401
- field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
402
- ),
403
- migrations.CreateModel(
404
- name='LegacyLabelVideoSegment',
405
- fields=[
406
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
407
- ('start_frame_number', models.IntegerField()),
408
- ('end_frame_number', models.IntegerField()),
409
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
410
- ('prediction_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segments', to='endoreg_db.legacyvideopredictionmeta')),
411
- ('source', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.informationsource')),
412
- ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.legacyvideo')),
413
- ],
414
- options={
415
- 'abstract': False,
416
- },
417
- ),
418
- migrations.CreateModel(
419
- name='LegacyFrame',
420
- fields=[
421
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
422
- ('frame_number', models.IntegerField()),
423
- ('image', models.ImageField(blank=True, null=True, upload_to='legacy_frames')),
424
- ('suffix', models.CharField(max_length=255)),
425
- ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.legacyvideo')),
426
- ],
427
- ),
428
- migrations.CreateModel(
429
- name='LegacyBinaryClassificationAnnotationTask',
430
- fields=[
431
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
432
- ('is_finished', models.BooleanField(default=False)),
433
- ('date_created', models.DateTimeField(auto_now_add=True)),
434
- ('date_finished', models.DateTimeField(blank=True, null=True)),
435
- ('image_path', models.CharField(blank=True, max_length=255, null=True)),
436
- ('labelstudio_project_id', models.IntegerField(blank=True, null=True)),
437
- ('labelstudio_task_id', models.IntegerField(blank=True, null=True)),
438
- ('image_type', models.CharField(default='legacy', max_length=255)),
439
- ('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.legacyframe')),
440
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
441
- ],
442
- options={
443
- 'abstract': False,
444
- },
445
- ),
446
- migrations.CreateModel(
447
- name='LabelVideoSegment',
448
- fields=[
449
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
450
- ('start_frame_number', models.IntegerField()),
451
- ('end_frame_number', models.IntegerField()),
452
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
453
- ('prediction_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segments', to='endoreg_db.videopredictionmeta')),
454
- ('source', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.informationsource')),
455
- ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.video')),
456
- ],
457
- options={
458
- 'abstract': False,
459
- },
460
- ),
461
- migrations.AddField(
462
- model_name='label',
463
- name='label_type',
464
- field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
465
- ),
466
- migrations.CreateModel(
467
- name='ImageClassificationPrediction',
468
- fields=[
469
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
470
- ('value', models.BooleanField()),
471
- ('confidence', models.FloatField()),
472
- ('date_created', models.DateTimeField(auto_now_add=True)),
473
- ('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.frame')),
474
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.label')),
475
- ('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyframe')),
476
- ('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyimage')),
477
- ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.modelmeta')),
478
- ],
479
- ),
480
- migrations.CreateModel(
481
- name='ImageClassificationAnnotation',
482
- fields=[
483
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
484
- ('value', models.BooleanField()),
485
- ('annotator', models.CharField(max_length=255)),
486
- ('date_created', models.DateTimeField(auto_now_add=True)),
487
- ('date_modified', models.DateTimeField(auto_now=True)),
488
- ('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.frame')),
489
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.label')),
490
- ('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyframe')),
491
- ('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyimage')),
492
- ],
493
- ),
494
- migrations.AddField(
495
- model_name='frame',
496
- name='video',
497
- field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.video'),
498
- ),
499
- migrations.CreateModel(
500
- name='ExaminationTimeType',
501
- fields=[
502
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
503
- ('name', models.CharField(max_length=100, unique=True)),
504
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
505
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
506
- ('examinations', models.ManyToManyField(blank=True, to='endoreg_db.examination')),
507
- ],
508
- options={
509
- 'verbose_name': 'Examination Time Type',
510
- 'verbose_name_plural': 'Examination Time Types',
511
- 'ordering': ['name'],
512
- },
513
- ),
514
- migrations.CreateModel(
515
- name='ExaminationTime',
516
- fields=[
517
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
518
- ('name', models.CharField(max_length=100, unique=True)),
519
- ('name_de', models.CharField(blank=True, max_length=100, null=True)),
520
- ('name_en', models.CharField(blank=True, max_length=100, null=True)),
521
- ('start_time', models.TimeField(blank=True, null=True)),
522
- ('end_time', models.TimeField(blank=True, null=True)),
523
- ('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
524
- ],
525
- options={
526
- 'verbose_name': 'Examination Time',
527
- 'verbose_name_plural': 'Examination Times',
528
- 'ordering': ['name'],
529
- },
530
- ),
531
- migrations.AddField(
532
- model_name='examination',
533
- name='examination_types',
534
- field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
535
- ),
536
- migrations.CreateModel(
537
- name='BinaryClassificationAnnotationTask',
538
- fields=[
539
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
540
- ('is_finished', models.BooleanField(default=False)),
541
- ('date_created', models.DateTimeField(auto_now_add=True)),
542
- ('date_finished', models.DateTimeField(blank=True, null=True)),
543
- ('image_path', models.CharField(blank=True, max_length=255, null=True)),
544
- ('labelstudio_project_id', models.IntegerField(blank=True, null=True)),
545
- ('labelstudio_task_id', models.IntegerField(blank=True, null=True)),
546
- ('image_type', models.CharField(default='frame', max_length=255)),
547
- ('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.frame')),
548
- ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
549
- ],
550
- options={
551
- 'abstract': False,
552
- },
553
- ),
554
- migrations.CreateModel(
555
- name='ActiveModel',
556
- fields=[
557
- ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
558
- ('name', models.CharField(max_length=255, unique=True)),
559
- ('model_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
560
- ],
561
- ),
562
- migrations.AddIndex(
563
- model_name='legacyframe',
564
- index=models.Index(fields=['video', 'frame_number'], name='endoreg_db__video_i_e10f1c_idx'),
565
- ),
566
- migrations.AlterUniqueTogether(
567
- name='legacyframe',
568
- unique_together={('video', 'frame_number')},
569
- ),
570
- migrations.AlterUniqueTogether(
571
- name='imageclassificationprediction',
572
- unique_together={('label', 'frame', 'model_meta')},
573
- ),
574
- migrations.AddIndex(
575
- model_name='frame',
576
- index=models.Index(fields=['video', 'frame_number'], name='endoreg_db__video_i_56cc44_idx'),
577
- ),
578
- migrations.AlterUniqueTogether(
579
- name='frame',
580
- unique_together={('video', 'frame_number')},
581
- ),
582
- ]
1
+ # Generated by Django 4.2.10 on 2024-02-13 22:19
2
+
3
+ from django.conf import settings
4
+ from django.db import migrations, models
5
+ import django.db.models.deletion
6
+
7
+
8
+ class Migration(migrations.Migration):
9
+
10
+ initial = True
11
+
12
+ dependencies = [
13
+ migrations.swappable_dependency(settings.AUTH_USER_MODEL),
14
+ ]
15
+
16
+ operations = [
17
+ migrations.CreateModel(
18
+ name='Center',
19
+ fields=[
20
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
21
+ ('name', models.CharField(max_length=255)),
22
+ ('name_de', models.CharField(blank=True, max_length=255, null=True)),
23
+ ('name_en', models.CharField(blank=True, max_length=255, null=True)),
24
+ ],
25
+ ),
26
+ migrations.CreateModel(
27
+ name='Endoscope',
28
+ fields=[
29
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
30
+ ('name', models.CharField(max_length=255)),
31
+ ('sn', models.CharField(max_length=255)),
32
+ ],
33
+ options={
34
+ 'verbose_name': 'Endoscope',
35
+ 'verbose_name_plural': 'Endoscopes',
36
+ 'ordering': ['name'],
37
+ },
38
+ ),
39
+ migrations.CreateModel(
40
+ name='EndoscopeType',
41
+ fields=[
42
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
43
+ ('name', models.CharField(max_length=255)),
44
+ ('name_de', models.CharField(blank=True, max_length=255, null=True)),
45
+ ('name_en', models.CharField(blank=True, max_length=255, null=True)),
46
+ ],
47
+ options={
48
+ 'verbose_name': 'Endoscope Type',
49
+ 'verbose_name_plural': 'Endoscope Types',
50
+ 'ordering': ['name'],
51
+ },
52
+ ),
53
+ migrations.CreateModel(
54
+ name='EndoscopyProcessor',
55
+ fields=[
56
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
57
+ ('name', models.CharField(max_length=255)),
58
+ ('image_width', models.IntegerField()),
59
+ ('image_height', models.IntegerField()),
60
+ ('endoscope_image_x', models.IntegerField()),
61
+ ('endoscope_image_y', models.IntegerField()),
62
+ ('endoscope_image_width', models.IntegerField()),
63
+ ('endoscope_image_height', models.IntegerField()),
64
+ ('examination_date_x', models.IntegerField()),
65
+ ('examination_date_y', models.IntegerField()),
66
+ ('examination_date_width', models.IntegerField()),
67
+ ('examination_date_height', models.IntegerField()),
68
+ ('examination_time_x', models.IntegerField(blank=True, null=True)),
69
+ ('examination_time_y', models.IntegerField(blank=True, null=True)),
70
+ ('examination_time_width', models.IntegerField(blank=True, null=True)),
71
+ ('examination_time_height', models.IntegerField(blank=True, null=True)),
72
+ ('patient_first_name_x', models.IntegerField()),
73
+ ('patient_first_name_y', models.IntegerField()),
74
+ ('patient_first_name_width', models.IntegerField()),
75
+ ('patient_first_name_height', models.IntegerField()),
76
+ ('patient_last_name_x', models.IntegerField()),
77
+ ('patient_last_name_y', models.IntegerField()),
78
+ ('patient_last_name_width', models.IntegerField()),
79
+ ('patient_last_name_height', models.IntegerField()),
80
+ ('patient_dob_x', models.IntegerField()),
81
+ ('patient_dob_y', models.IntegerField()),
82
+ ('patient_dob_width', models.IntegerField()),
83
+ ('patient_dob_height', models.IntegerField()),
84
+ ('endoscope_type_x', models.IntegerField(blank=True, null=True)),
85
+ ('endoscope_type_y', models.IntegerField(blank=True, null=True)),
86
+ ('endoscope_type_width', models.IntegerField(blank=True, null=True)),
87
+ ('endoscope_type_height', models.IntegerField(blank=True, null=True)),
88
+ ('endoscope_sn_x', models.IntegerField(blank=True, null=True)),
89
+ ('endoscope_sn_y', models.IntegerField(blank=True, null=True)),
90
+ ('endoscope_sn_width', models.IntegerField(blank=True, null=True)),
91
+ ('endoscope_sn_height', models.IntegerField(blank=True, null=True)),
92
+ ],
93
+ ),
94
+ migrations.CreateModel(
95
+ name='Examination',
96
+ fields=[
97
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
98
+ ('name', models.CharField(max_length=100, unique=True)),
99
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
100
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
101
+ ('date', models.DateField(blank=True, null=True)),
102
+ ('time', models.TimeField(blank=True, null=True)),
103
+ ],
104
+ options={
105
+ 'verbose_name': 'Examination',
106
+ 'verbose_name_plural': 'Examinations',
107
+ 'ordering': ['name'],
108
+ },
109
+ ),
110
+ migrations.CreateModel(
111
+ name='ExaminationType',
112
+ fields=[
113
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
114
+ ('name', models.CharField(max_length=100, unique=True)),
115
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
116
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
117
+ ],
118
+ ),
119
+ migrations.CreateModel(
120
+ name='Examiner',
121
+ fields=[
122
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
123
+ ('first_name', models.CharField(max_length=255)),
124
+ ('last_name', models.CharField(max_length=255)),
125
+ ('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
126
+ ('gender', models.CharField(blank=True, choices=[('Male', 'Male'), ('Female', 'Female'), ('Other', 'Other')], max_length=10, null=True)),
127
+ ('email', models.EmailField(blank=True, max_length=255, null=True)),
128
+ ('phone', models.CharField(blank=True, max_length=255, null=True)),
129
+ ('is_real_person', models.BooleanField(default=True)),
130
+ ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
131
+ ],
132
+ options={
133
+ 'abstract': False,
134
+ },
135
+ ),
136
+ migrations.CreateModel(
137
+ name='Frame',
138
+ fields=[
139
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
140
+ ('frame_number', models.IntegerField()),
141
+ ('image', models.ImageField(upload_to='frames')),
142
+ ('suffix', models.CharField(max_length=255)),
143
+ ],
144
+ options={
145
+ 'abstract': False,
146
+ },
147
+ ),
148
+ migrations.CreateModel(
149
+ name='InformationSource',
150
+ fields=[
151
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
152
+ ('name', models.CharField(max_length=100)),
153
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
154
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
155
+ ],
156
+ ),
157
+ migrations.CreateModel(
158
+ name='Label',
159
+ fields=[
160
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
161
+ ('name', models.CharField(max_length=255)),
162
+ ('description', models.TextField(blank=True, null=True)),
163
+ ],
164
+ ),
165
+ migrations.CreateModel(
166
+ name='LabelSet',
167
+ fields=[
168
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
169
+ ('name', models.CharField(max_length=255)),
170
+ ('description', models.TextField(blank=True, null=True)),
171
+ ('version', models.IntegerField()),
172
+ ('labels', models.ManyToManyField(related_name='labels', to='endoreg_db.label')),
173
+ ],
174
+ ),
175
+ migrations.CreateModel(
176
+ name='LabelType',
177
+ fields=[
178
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
179
+ ('name', models.CharField(max_length=255)),
180
+ ('description', models.TextField(blank=True, null=True)),
181
+ ],
182
+ ),
183
+ migrations.CreateModel(
184
+ name='LegacyImage',
185
+ fields=[
186
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
187
+ ('image', models.ImageField(upload_to='legacy_images')),
188
+ ('suffix', models.CharField(max_length=255)),
189
+ ],
190
+ ),
191
+ migrations.CreateModel(
192
+ name='LegacyVideo',
193
+ fields=[
194
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
195
+ ('video_hash', models.CharField(max_length=255, unique=True)),
196
+ ('date', models.DateField(blank=True, null=True)),
197
+ ('suffix', models.CharField(max_length=255)),
198
+ ('fps', models.FloatField()),
199
+ ('duration', models.FloatField()),
200
+ ('width', models.IntegerField()),
201
+ ('height', models.IntegerField()),
202
+ ('endoscope_image_x', models.IntegerField(blank=True, null=True)),
203
+ ('endoscope_image_y', models.IntegerField(blank=True, null=True)),
204
+ ('endoscope_image_width', models.IntegerField(blank=True, null=True)),
205
+ ('endoscope_image_height', models.IntegerField(blank=True, null=True)),
206
+ ('frames_extracted', models.BooleanField(default=False)),
207
+ ('meta', models.JSONField(blank=True, null=True)),
208
+ ('file', models.FileField(blank=True, null=True, upload_to='legacy_videos')),
209
+ ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
210
+ ('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
211
+ ],
212
+ options={
213
+ 'abstract': False,
214
+ },
215
+ ),
216
+ migrations.CreateModel(
217
+ name='ModelMeta',
218
+ fields=[
219
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
220
+ ('name', models.CharField(max_length=255)),
221
+ ('version', models.CharField(max_length=255)),
222
+ ('weights', models.FileField(upload_to='weights/')),
223
+ ('description', models.TextField(blank=True, null=True)),
224
+ ('date_created', models.DateTimeField(auto_now_add=True)),
225
+ ('labelset', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.labelset')),
226
+ ],
227
+ ),
228
+ migrations.CreateModel(
229
+ name='ModelType',
230
+ fields=[
231
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
232
+ ('name', models.CharField(max_length=255)),
233
+ ('description', models.TextField(blank=True, null=True)),
234
+ ],
235
+ ),
236
+ migrations.CreateModel(
237
+ name='Patient',
238
+ fields=[
239
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
240
+ ('first_name', models.CharField(max_length=255)),
241
+ ('last_name', models.CharField(max_length=255)),
242
+ ('dob', models.DateField(blank=True, null=True, verbose_name='Date of Birth')),
243
+ ('gender', models.CharField(blank=True, choices=[('Male', 'Male'), ('Female', 'Female'), ('Other', 'Other')], max_length=10, null=True)),
244
+ ('email', models.EmailField(blank=True, max_length=255, null=True)),
245
+ ('phone', models.CharField(blank=True, max_length=255, null=True)),
246
+ ('is_real_person', models.BooleanField(default=True)),
247
+ ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
248
+ ],
249
+ options={
250
+ 'abstract': False,
251
+ },
252
+ ),
253
+ migrations.CreateModel(
254
+ name='Profession',
255
+ fields=[
256
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
257
+ ('name', models.CharField(max_length=100)),
258
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
259
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
260
+ ('description', models.TextField(blank=True, null=True)),
261
+ ],
262
+ ),
263
+ migrations.CreateModel(
264
+ name='Unit',
265
+ fields=[
266
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
267
+ ('name', models.CharField(max_length=100)),
268
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
269
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
270
+ ('description', models.CharField(blank=True, max_length=100, null=True)),
271
+ ('abbreviation', models.CharField(blank=True, max_length=10, null=True)),
272
+ ],
273
+ ),
274
+ migrations.CreateModel(
275
+ name='Video',
276
+ fields=[
277
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
278
+ ('file', models.FileField(blank=True, null=True, upload_to='raw_videos')),
279
+ ('video_hash', models.CharField(max_length=255, unique=True)),
280
+ ('date', models.DateField(blank=True, null=True)),
281
+ ('suffix', models.CharField(max_length=255)),
282
+ ('fps', models.FloatField()),
283
+ ('duration', models.FloatField()),
284
+ ('width', models.IntegerField()),
285
+ ('height', models.IntegerField()),
286
+ ('endoscope_image_x', models.IntegerField(blank=True, null=True)),
287
+ ('endoscope_image_y', models.IntegerField(blank=True, null=True)),
288
+ ('endoscope_image_width', models.IntegerField(blank=True, null=True)),
289
+ ('endoscope_image_height', models.IntegerField(blank=True, null=True)),
290
+ ('frames_extracted', models.BooleanField(default=False)),
291
+ ('meta', models.JSONField(blank=True, null=True)),
292
+ ('center', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
293
+ ('endoscopy_processor', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
294
+ ],
295
+ options={
296
+ 'abstract': False,
297
+ },
298
+ ),
299
+ migrations.CreateModel(
300
+ name='VideoPredictionMeta',
301
+ fields=[
302
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
303
+ ('date_created', models.DateTimeField(auto_now_add=True)),
304
+ ('date_modified', models.DateTimeField(auto_now=True)),
305
+ ('prediction_array', models.BinaryField(blank=True, null=True)),
306
+ ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
307
+ ('video', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.video')),
308
+ ],
309
+ options={
310
+ 'abstract': False,
311
+ 'unique_together': {('model_meta', 'video')},
312
+ },
313
+ ),
314
+ migrations.CreateModel(
315
+ name='VideoImportMeta',
316
+ fields=[
317
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
318
+ ('video_anonymized', models.BooleanField(default=False)),
319
+ ('video_patient_data_detected', models.BooleanField(default=False)),
320
+ ('outside_detected', models.BooleanField(default=False)),
321
+ ('patient_data_removed', models.BooleanField(default=False)),
322
+ ('outside_removed', models.BooleanField(default=False)),
323
+ ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
324
+ ('endoscope', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscope')),
325
+ ('processor', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.endoscopyprocessor')),
326
+ ],
327
+ ),
328
+ migrations.AddField(
329
+ model_name='video',
330
+ name='import_meta',
331
+ field=models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.videoimportmeta'),
332
+ ),
333
+ migrations.AddField(
334
+ model_name='video',
335
+ name='patient',
336
+ field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
337
+ ),
338
+ migrations.CreateModel(
339
+ name='ReportFile',
340
+ fields=[
341
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
342
+ ('pdf', models.FileField(blank=True, null=True, upload_to='raw_report_pdfs')),
343
+ ('pdf_hash', models.CharField(max_length=255, unique=True)),
344
+ ('meta', models.JSONField(blank=True, null=True)),
345
+ ('text', models.TextField(blank=True, null=True)),
346
+ ('text_anonymized', models.TextField(blank=True, null=True)),
347
+ ('date', models.DateField(blank=True, null=True)),
348
+ ('time', models.TimeField(blank=True, null=True)),
349
+ ('center', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.center')),
350
+ ('examiner', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examiner')),
351
+ ('patient', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient')),
352
+ ],
353
+ ),
354
+ migrations.CreateModel(
355
+ name='PortalUserInfo',
356
+ fields=[
357
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
358
+ ('works_in_endoscopy', models.BooleanField(blank=True, null=True)),
359
+ ('profession', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.profession')),
360
+ ('user', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, to=settings.AUTH_USER_MODEL)),
361
+ ],
362
+ ),
363
+ migrations.CreateModel(
364
+ name='PatientExamination',
365
+ fields=[
366
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
367
+ ('examination', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.examination')),
368
+ ('patient', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='patient_examinations', to='endoreg_db.patient')),
369
+ ('report_file', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.reportfile')),
370
+ ('video', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='patient_examination', to='endoreg_db.video')),
371
+ ],
372
+ options={
373
+ 'verbose_name': 'Patient Examination',
374
+ 'verbose_name_plural': 'Patient Examinations',
375
+ 'ordering': ['patient', 'examination'],
376
+ },
377
+ ),
378
+ migrations.AddField(
379
+ model_name='modelmeta',
380
+ name='type',
381
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='models', to='endoreg_db.modeltype'),
382
+ ),
383
+ migrations.CreateModel(
384
+ name='LegacyVideoPredictionMeta',
385
+ fields=[
386
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
387
+ ('date_created', models.DateTimeField(auto_now_add=True)),
388
+ ('date_modified', models.DateTimeField(auto_now=True)),
389
+ ('prediction_array', models.BinaryField(blank=True, null=True)),
390
+ ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.modelmeta')),
391
+ ('video', models.OneToOneField(on_delete=django.db.models.deletion.CASCADE, related_name='video_prediction_meta', to='endoreg_db.legacyvideo')),
392
+ ],
393
+ options={
394
+ 'abstract': False,
395
+ 'unique_together': {('model_meta', 'video')},
396
+ },
397
+ ),
398
+ migrations.AddField(
399
+ model_name='legacyvideo',
400
+ name='patient',
401
+ field=models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.patient'),
402
+ ),
403
+ migrations.CreateModel(
404
+ name='LegacyLabelVideoSegment',
405
+ fields=[
406
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
407
+ ('start_frame_number', models.IntegerField()),
408
+ ('end_frame_number', models.IntegerField()),
409
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
410
+ ('prediction_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segments', to='endoreg_db.legacyvideopredictionmeta')),
411
+ ('source', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.informationsource')),
412
+ ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.legacyvideo')),
413
+ ],
414
+ options={
415
+ 'abstract': False,
416
+ },
417
+ ),
418
+ migrations.CreateModel(
419
+ name='LegacyFrame',
420
+ fields=[
421
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
422
+ ('frame_number', models.IntegerField()),
423
+ ('image', models.ImageField(blank=True, null=True, upload_to='legacy_frames')),
424
+ ('suffix', models.CharField(max_length=255)),
425
+ ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.legacyvideo')),
426
+ ],
427
+ ),
428
+ migrations.CreateModel(
429
+ name='LegacyBinaryClassificationAnnotationTask',
430
+ fields=[
431
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
432
+ ('is_finished', models.BooleanField(default=False)),
433
+ ('date_created', models.DateTimeField(auto_now_add=True)),
434
+ ('date_finished', models.DateTimeField(blank=True, null=True)),
435
+ ('image_path', models.CharField(blank=True, max_length=255, null=True)),
436
+ ('labelstudio_project_id', models.IntegerField(blank=True, null=True)),
437
+ ('labelstudio_task_id', models.IntegerField(blank=True, null=True)),
438
+ ('image_type', models.CharField(default='legacy', max_length=255)),
439
+ ('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.legacyframe')),
440
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
441
+ ],
442
+ options={
443
+ 'abstract': False,
444
+ },
445
+ ),
446
+ migrations.CreateModel(
447
+ name='LabelVideoSegment',
448
+ fields=[
449
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
450
+ ('start_frame_number', models.IntegerField()),
451
+ ('end_frame_number', models.IntegerField()),
452
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
453
+ ('prediction_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='video_segments', to='endoreg_db.videopredictionmeta')),
454
+ ('source', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.informationsource')),
455
+ ('video', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.video')),
456
+ ],
457
+ options={
458
+ 'abstract': False,
459
+ },
460
+ ),
461
+ migrations.AddField(
462
+ model_name='label',
463
+ name='label_type',
464
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='labels', to='endoreg_db.labeltype'),
465
+ ),
466
+ migrations.CreateModel(
467
+ name='ImageClassificationPrediction',
468
+ fields=[
469
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
470
+ ('value', models.BooleanField()),
471
+ ('confidence', models.FloatField()),
472
+ ('date_created', models.DateTimeField(auto_now_add=True)),
473
+ ('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.frame')),
474
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.label')),
475
+ ('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyframe')),
476
+ ('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.legacyimage')),
477
+ ('model_meta', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_predictions', to='endoreg_db.modelmeta')),
478
+ ],
479
+ ),
480
+ migrations.CreateModel(
481
+ name='ImageClassificationAnnotation',
482
+ fields=[
483
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
484
+ ('value', models.BooleanField()),
485
+ ('annotator', models.CharField(max_length=255)),
486
+ ('date_created', models.DateTimeField(auto_now_add=True)),
487
+ ('date_modified', models.DateTimeField(auto_now=True)),
488
+ ('frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.frame')),
489
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.label')),
490
+ ('legacy_frame', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyframe')),
491
+ ('legacy_image', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='image_classification_annotations', to='endoreg_db.legacyimage')),
492
+ ],
493
+ ),
494
+ migrations.AddField(
495
+ model_name='frame',
496
+ name='video',
497
+ field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='frames', to='endoreg_db.video'),
498
+ ),
499
+ migrations.CreateModel(
500
+ name='ExaminationTimeType',
501
+ fields=[
502
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
503
+ ('name', models.CharField(max_length=100, unique=True)),
504
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
505
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
506
+ ('examinations', models.ManyToManyField(blank=True, to='endoreg_db.examination')),
507
+ ],
508
+ options={
509
+ 'verbose_name': 'Examination Time Type',
510
+ 'verbose_name_plural': 'Examination Time Types',
511
+ 'ordering': ['name'],
512
+ },
513
+ ),
514
+ migrations.CreateModel(
515
+ name='ExaminationTime',
516
+ fields=[
517
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
518
+ ('name', models.CharField(max_length=100, unique=True)),
519
+ ('name_de', models.CharField(blank=True, max_length=100, null=True)),
520
+ ('name_en', models.CharField(blank=True, max_length=100, null=True)),
521
+ ('start_time', models.TimeField(blank=True, null=True)),
522
+ ('end_time', models.TimeField(blank=True, null=True)),
523
+ ('time_types', models.ManyToManyField(blank=True, to='endoreg_db.examinationtimetype')),
524
+ ],
525
+ options={
526
+ 'verbose_name': 'Examination Time',
527
+ 'verbose_name_plural': 'Examination Times',
528
+ 'ordering': ['name'],
529
+ },
530
+ ),
531
+ migrations.AddField(
532
+ model_name='examination',
533
+ name='examination_types',
534
+ field=models.ManyToManyField(blank=True, to='endoreg_db.examinationtype'),
535
+ ),
536
+ migrations.CreateModel(
537
+ name='BinaryClassificationAnnotationTask',
538
+ fields=[
539
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
540
+ ('is_finished', models.BooleanField(default=False)),
541
+ ('date_created', models.DateTimeField(auto_now_add=True)),
542
+ ('date_finished', models.DateTimeField(blank=True, null=True)),
543
+ ('image_path', models.CharField(blank=True, max_length=255, null=True)),
544
+ ('labelstudio_project_id', models.IntegerField(blank=True, null=True)),
545
+ ('labelstudio_task_id', models.IntegerField(blank=True, null=True)),
546
+ ('image_type', models.CharField(default='frame', max_length=255)),
547
+ ('frame', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='binary_classification_annotation_tasks', to='endoreg_db.frame')),
548
+ ('label', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, to='endoreg_db.label')),
549
+ ],
550
+ options={
551
+ 'abstract': False,
552
+ },
553
+ ),
554
+ migrations.CreateModel(
555
+ name='ActiveModel',
556
+ fields=[
557
+ ('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
558
+ ('name', models.CharField(max_length=255, unique=True)),
559
+ ('model_meta', models.OneToOneField(blank=True, null=True, on_delete=django.db.models.deletion.SET_NULL, to='endoreg_db.modelmeta')),
560
+ ],
561
+ ),
562
+ migrations.AddIndex(
563
+ model_name='legacyframe',
564
+ index=models.Index(fields=['video', 'frame_number'], name='endoreg_db__video_i_e10f1c_idx'),
565
+ ),
566
+ migrations.AlterUniqueTogether(
567
+ name='legacyframe',
568
+ unique_together={('video', 'frame_number')},
569
+ ),
570
+ migrations.AlterUniqueTogether(
571
+ name='imageclassificationprediction',
572
+ unique_together={('label', 'frame', 'model_meta')},
573
+ ),
574
+ migrations.AddIndex(
575
+ model_name='frame',
576
+ index=models.Index(fields=['video', 'frame_number'], name='endoreg_db__video_i_56cc44_idx'),
577
+ ),
578
+ migrations.AlterUniqueTogether(
579
+ name='frame',
580
+ unique_together={('video', 'frame_number')},
581
+ ),
582
+ ]