catsim-test 0.0.5__cp313-cp313-manylinux_2_31_x86_64.whl

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Files changed (1235) hide show
  1. catsim_test-0.0.5.dist-info/METADATA +5 -0
  2. catsim_test-0.0.5.dist-info/RECORD +1235 -0
  3. catsim_test-0.0.5.dist-info/WHEEL +5 -0
  4. catsim_test-0.0.5.dist-info/licenses/LICENSE +29 -0
  5. catsim_test-0.0.5.dist-info/sboms/auditwheel.cdx.json +1 -0
  6. catsim_test-0.0.5.dist-info/top_level.txt +2 -0
  7. catsim_test.libs/libgomp-98b21ff3.so.1.0.0 +0 -0
  8. dummy.cpython-313-x86_64-linux-gnu.so +0 -0
  9. gecatsim/__init__.py +20 -0
  10. gecatsim/bowtie/large.txt +891 -0
  11. gecatsim/bowtie/medium.txt +891 -0
  12. gecatsim/bowtie/small.txt +891 -0
  13. gecatsim/cfg/Phantom_Default.cfg +7 -0
  14. gecatsim/cfg/Physics_Default.cfg +38 -0
  15. gecatsim/cfg/Protocol_Default.cfg +33 -0
  16. gecatsim/cfg/Recon_Default.cfg +22 -0
  17. gecatsim/cfg/Scanner_Default.cfg +31 -0
  18. gecatsim/clib_build/BuildLinux64 +6 -0
  19. gecatsim/clib_build/BuildWin64.bat +17 -0
  20. gecatsim/clib_build/MakeMacOS +48 -0
  21. gecatsim/clib_build/MakeVariables_1 +19 -0
  22. gecatsim/clib_build/MakeVariables_2 +5 -0
  23. gecatsim/clib_build/MakeVariables_3 +33 -0
  24. gecatsim/clib_build/MakeVariables_3.1 +32 -0
  25. gecatsim/clib_build/MakeWindows64 +45 -0
  26. gecatsim/clib_build/Makefile +41 -0
  27. gecatsim/clib_build/readme.md +13 -0
  28. gecatsim/clib_build/src/BaseObject.cpp +144 -0
  29. gecatsim/clib_build/src/BaseObject.h +74 -0
  30. gecatsim/clib_build/src/ClipPlane.cpp +83 -0
  31. gecatsim/clib_build/src/ClipPlane.h +28 -0
  32. gecatsim/clib_build/src/CrossSection.cpp +179 -0
  33. gecatsim/clib_build/src/CrossSection.hpp +27 -0
  34. gecatsim/clib_build/src/CrossSectionHandler.cpp +160 -0
  35. gecatsim/clib_build/src/CrossSectionHandler.hpp +72 -0
  36. gecatsim/clib_build/src/Cube.cpp +144 -0
  37. gecatsim/clib_build/src/Cube.h +26 -0
  38. gecatsim/clib_build/src/Cylinder.cpp +156 -0
  39. gecatsim/clib_build/src/Cylinder.h +25 -0
  40. gecatsim/clib_build/src/DD2Back.c +332 -0
  41. gecatsim/clib_build/src/DD2ParProj.c +377 -0
  42. gecatsim/clib_build/src/DD2Proj.c +333 -0
  43. gecatsim/clib_build/src/DD2WBack.c +350 -0
  44. gecatsim/clib_build/src/DD3.hpp +423 -0
  45. gecatsim/clib_build/src/DD3Proj.cpp +519 -0
  46. gecatsim/clib_build/src/DD3Proj_roi_notrans_mm.cpp +585 -0
  47. gecatsim/clib_build/src/DD3WBack.c +491 -0
  48. gecatsim/clib_build/src/DD3_roi_notrans_mm.hpp +272 -0
  49. gecatsim/clib_build/src/Detector.cpp +389 -0
  50. gecatsim/clib_build/src/Detector.hpp +134 -0
  51. gecatsim/clib_build/src/Interpolate.cpp +58 -0
  52. gecatsim/clib_build/src/Intersection.cpp +198 -0
  53. gecatsim/clib_build/src/Intersection.h +36 -0
  54. gecatsim/clib_build/src/MatVec.cpp +262 -0
  55. gecatsim/clib_build/src/MatVec.h +68 -0
  56. gecatsim/clib_build/src/Objects.cpp +23 -0
  57. gecatsim/clib_build/src/Objects.hpp +90 -0
  58. gecatsim/clib_build/src/Phantom.cpp +169 -0
  59. gecatsim/clib_build/src/Phantom.hpp +43 -0
  60. gecatsim/clib_build/src/Photon.cpp +168 -0
  61. gecatsim/clib_build/src/Photon.hpp +56 -0
  62. gecatsim/clib_build/src/RD3Back.cpp +357 -0
  63. gecatsim/clib_build/src/RD3Intersections.cpp +154 -0
  64. gecatsim/clib_build/src/RD3bench.cpp +505 -0
  65. gecatsim/clib_build/src/Sphere.cpp +43 -0
  66. gecatsim/clib_build/src/Sphere.h +25 -0
  67. gecatsim/clib_build/src/Transformation.cpp +104 -0
  68. gecatsim/clib_build/src/Transformation.h +37 -0
  69. gecatsim/clib_build/src/TreePhantom.cpp +138 -0
  70. gecatsim/clib_build/src/TreePhantom.h +27 -0
  71. gecatsim/clib_build/src/Volume.cpp +101 -0
  72. gecatsim/clib_build/src/Volume.hpp +28 -0
  73. gecatsim/clib_build/src/analytic_projector.c +2433 -0
  74. gecatsim/clib_build/src/analytic_projector.h +235 -0
  75. gecatsim/clib_build/src/compt.cpp +400 -0
  76. gecatsim/clib_build/src/compt2.cpp +558 -0
  77. gecatsim/clib_build/src/compt3.cpp +607 -0
  78. gecatsim/clib_build/src/ct_nurbs.h +214 -0
  79. gecatsim/clib_build/src/extractsino.c +42 -0
  80. gecatsim/clib_build/src/fm_gethostid.c +23 -0
  81. gecatsim/clib_build/src/fm_getrandpid.c +31 -0
  82. gecatsim/clib_build/src/gemsfilt.c +1084 -0
  83. gecatsim/clib_build/src/getMemorySize.cpp +105 -0
  84. gecatsim/clib_build/src/getMemorySize.h +5 -0
  85. gecatsim/clib_build/src/hull2.c +77 -0
  86. gecatsim/clib_build/src/intersections.c +131 -0
  87. gecatsim/clib_build/src/label.h +10 -0
  88. gecatsim/clib_build/src/main.cpp +609 -0
  89. gecatsim/clib_build/src/make_volume.c +573 -0
  90. gecatsim/clib_build/src/nCAT_main.c +6343 -0
  91. gecatsim/clib_build/src/negative_log.cpp +233 -0
  92. gecatsim/clib_build/src/negative_log.h +23 -0
  93. gecatsim/clib_build/src/pd2dbpcurved.c +98 -0
  94. gecatsim/clib_build/src/pd2dbpflat.c +101 -0
  95. gecatsim/clib_build/src/pd3dbpsemi.c +177 -0
  96. gecatsim/clib_build/src/phantom.l +72 -0
  97. gecatsim/clib_build/src/phantom.lex.c +1770 -0
  98. gecatsim/clib_build/src/phantom.tab.cpp +2126 -0
  99. gecatsim/clib_build/src/phantom.tab.hpp +126 -0
  100. gecatsim/clib_build/src/phantom.y +624 -0
  101. gecatsim/clib_build/src/rndpoi.c +793 -0
  102. gecatsim/clib_build/src/spline.c +81 -0
  103. gecatsim/clib_build/src/spline.h +6 -0
  104. gecatsim/clib_build/src/timer.c +64 -0
  105. gecatsim/clib_build/src/viewshift.c +25 -0
  106. gecatsim/clib_build/src/voxelized_projector.cpp +683 -0
  107. gecatsim/clib_build/src/xybowtie.c +76 -0
  108. gecatsim/dose/data/dosereconkernel_mthd4.mat +0 -0
  109. gecatsim/dose/data/scatter_E_loss_fraction.mat +0 -0
  110. gecatsim/dose/data/weighted_scatter_energy_by_spec.mat +0 -0
  111. gecatsim/dose/examples/dose_doserecon.cfg +16 -0
  112. gecatsim/dose/examples/dose_phantom.cfg +6 -0
  113. gecatsim/dose/examples/dose_physics.cfg +18 -0
  114. gecatsim/dose/examples/dose_protocol.cfg +15 -0
  115. gecatsim/dose/examples/dose_recon.cfg +9 -0
  116. gecatsim/dose/examples/dose_scanner.cfg +29 -0
  117. gecatsim/dose/examples/run.py +37 -0
  118. gecatsim/dose/lib/Dose_Recon_Library_Linux64.so +0 -0
  119. gecatsim/dose/lib/Dose_Recon_Library_Windows64.dll +0 -0
  120. gecatsim/dose/pyfiles/C_DD3Dose.py +84 -0
  121. gecatsim/dose/pyfiles/Combine_Spectrum_Bowtie_FlatFilter.py +15 -0
  122. gecatsim/dose/pyfiles/DoseConv.py +87 -0
  123. gecatsim/dose/pyfiles/GetMuByProcess.py +57 -0
  124. gecatsim/dose/pyfiles/__init__.py +0 -0
  125. gecatsim/dose/pyfiles/brconvol_matlab.py +67 -0
  126. gecatsim/dose/pyfiles/calcDetectorFlux.py +54 -0
  127. gecatsim/dose/pyfiles/catdoserecon.py +225 -0
  128. gecatsim/dose/pyfiles/doseconvol.py +52 -0
  129. gecatsim/dose/pyfiles/get_voxel_stopping_power.py +35 -0
  130. gecatsim/dose/pyfiles/img2vol.py +57 -0
  131. gecatsim/dose/pyfiles/xyfovimg.py +30 -0
  132. gecatsim/dose/readme.md +4 -0
  133. gecatsim/dose/src/DD3.hpp +371 -0
  134. gecatsim/dose/src/DD3Dose.cpp +787 -0
  135. gecatsim/dose/src/DD3Dose.hpp +22 -0
  136. gecatsim/dose/src/DD3Dose.i +23 -0
  137. gecatsim/dose/src/DD3Energy_clean.cpp +1464 -0
  138. gecatsim/dose/src/DD3Proj.cpp +504 -0
  139. gecatsim/dose/src/DD3Proj.hpp +20 -0
  140. gecatsim/dose/src/DD3Proj_mm.cpp +561 -0
  141. gecatsim/dose/src/DD3Proj_mm.hpp +21 -0
  142. gecatsim/dose/src/Win32_Build.bat +17 -0
  143. gecatsim/dose/src/Win64_Build.bat +20 -0
  144. gecatsim/examples/Catvoxel_Sample.py +53 -0
  145. gecatsim/examples/DD3Proj_mm_Sample.py +60 -0
  146. gecatsim/examples/GetMu_Sample.py +24 -0
  147. gecatsim/examples/Sim_Recon_Sample.py +45 -0
  148. gecatsim/examples/Sim_Recon_Sample_PCCT.py +69 -0
  149. gecatsim/examples/Sim_Sample.py +32 -0
  150. gecatsim/examples/Sim_Sample_Analyic.py +44 -0
  151. gecatsim/examples/Sim_Sample_Helical.py +32 -0
  152. gecatsim/examples/Sim_Sample_Hybrid.py +42 -0
  153. gecatsim/examples/Sim_Sample_PCCT.py +72 -0
  154. gecatsim/examples/Sim_Sample_Polygonal.py +47 -0
  155. gecatsim/examples/Sim_Sample_Scatter.py +38 -0
  156. gecatsim/examples/Sim_Sample_XCAT.py +50 -0
  157. gecatsim/examples/cfg/Phantom_Sample.cfg +6 -0
  158. gecatsim/examples/cfg/Phantom_Sample_Analytic.cfg +6 -0
  159. gecatsim/examples/cfg/Phantom_Sample_Hybrid.cfg +7 -0
  160. gecatsim/examples/cfg/Phantom_Sample_Polygonal.cfg +6 -0
  161. gecatsim/examples/cfg/Phantom_Sample_XCAT.cfg +6 -0
  162. gecatsim/examples/cfg/Physics_Sample.cfg +41 -0
  163. gecatsim/examples/cfg/Protocol_Sample_Helical.cfg +33 -0
  164. gecatsim/examples/cfg/Protocol_Sample_axial.cfg +33 -0
  165. gecatsim/examples/cfg/Recon_Sample_2d.cfg +6 -0
  166. gecatsim/examples/cfg/Recon_Sample_Helical.cfg +8 -0
  167. gecatsim/examples/cfg/Scanner_PCCT.cfg +30 -0
  168. gecatsim/examples/cfg/Scanner_Sample_generic.cfg +29 -0
  169. gecatsim/examples/vct_examples/Phantom_Sample_Analytic.cfg +6 -0
  170. gecatsim/examples/vct_examples/Physics_Sample.cfg +41 -0
  171. gecatsim/examples/vct_examples/Protocol_Sample_axial.cfg +33 -0
  172. gecatsim/examples/vct_examples/Recon_Sample_2d.cfg +6 -0
  173. gecatsim/examples/vct_examples/Scanner_Sample_generic.cfg +31 -0
  174. gecatsim/examples/vct_examples/read.md +1 -0
  175. gecatsim/focal_spot/readme.md +31 -0
  176. gecatsim/focal_spot/vct_large_fs.npz +0 -0
  177. gecatsim/focal_spot/vct_small_fs.npz +0 -0
  178. gecatsim/lib/libcatsim.so +0 -0
  179. gecatsim/lib/libcatsim64.dll +0 -0
  180. gecatsim/lib/libcatsim_macos.so +0 -0
  181. gecatsim/lib/pthreadGC2_x64.dll +0 -0
  182. gecatsim/lib/pthreads-2-9-1-release.zip +0 -0
  183. gecatsim/material/Ac +11 -0
  184. gecatsim/material/Ag +11 -0
  185. gecatsim/material/Al +11 -0
  186. gecatsim/material/Ar +11 -0
  187. gecatsim/material/As +11 -0
  188. gecatsim/material/At +11 -0
  189. gecatsim/material/Au +11 -0
  190. gecatsim/material/B +11 -0
  191. gecatsim/material/Ba +11 -0
  192. gecatsim/material/Be +11 -0
  193. gecatsim/material/Bi +11 -0
  194. gecatsim/material/Br +11 -0
  195. gecatsim/material/C +11 -0
  196. gecatsim/material/CIRS_adipose_adult2 +20 -0
  197. gecatsim/material/CIRS_adipose_adult3 +20 -0
  198. gecatsim/material/CIRS_bone_10yo +21 -0
  199. gecatsim/material/CIRS_bone_1yo +21 -0
  200. gecatsim/material/CIRS_bone_5yo +21 -0
  201. gecatsim/material/CIRS_bone_adult_and_15yo +21 -0
  202. gecatsim/material/CIRS_bone_newborn +21 -0
  203. gecatsim/material/CIRS_liver_adult +20 -0
  204. gecatsim/material/CIRS_lung_inhale +20 -0
  205. gecatsim/material/CIRS_plastic_water_LR +20 -0
  206. gecatsim/material/CIRS_spinal_cord +20 -0
  207. gecatsim/material/CZT +5 -0
  208. gecatsim/material/Ca +11 -0
  209. gecatsim/material/Cd +11 -0
  210. gecatsim/material/Ce +11 -0
  211. gecatsim/material/Cl +11 -0
  212. gecatsim/material/Co +11 -0
  213. gecatsim/material/Copyright.txt +7 -0
  214. gecatsim/material/Cr +11 -0
  215. gecatsim/material/Cs +11 -0
  216. gecatsim/material/CsI +16 -0
  217. gecatsim/material/Cu +11 -0
  218. gecatsim/material/Dy +11 -0
  219. gecatsim/material/Er +11 -0
  220. gecatsim/material/Eu +11 -0
  221. gecatsim/material/F +11 -0
  222. gecatsim/material/Fe +11 -0
  223. gecatsim/material/Fr +11 -0
  224. gecatsim/material/GOS +19 -0
  225. gecatsim/material/Ga +11 -0
  226. gecatsim/material/Gd +11 -0
  227. gecatsim/material/Ge +11 -0
  228. gecatsim/material/H +11 -0
  229. gecatsim/material/He +11 -0
  230. gecatsim/material/Hf +11 -0
  231. gecatsim/material/Hg +11 -0
  232. gecatsim/material/Ho +11 -0
  233. gecatsim/material/I +11 -0
  234. gecatsim/material/ICRU_adipose_adult2 +21 -0
  235. gecatsim/material/ICRU_blood_adult +24 -0
  236. gecatsim/material/ICRU_brain_adult +26 -0
  237. gecatsim/material/ICRU_breast_adult2 +22 -0
  238. gecatsim/material/ICRU_eye_lens_adult +22 -0
  239. gecatsim/material/ICRU_kidney_adult +24 -0
  240. gecatsim/material/ICRU_liver_adult +23 -0
  241. gecatsim/material/ICRU_lung_adult_healthy +23 -0
  242. gecatsim/material/ICRU_muscle_adult +23 -0
  243. gecatsim/material/ICRU_pancreas_adult +23 -0
  244. gecatsim/material/ICRU_skeleton_cortical_bone_adult +23 -0
  245. gecatsim/material/ICRU_skin_adult +23 -0
  246. gecatsim/material/ICRU_spleen_adult +23 -0
  247. gecatsim/material/ICRU_testis_adult +23 -0
  248. gecatsim/material/In +11 -0
  249. gecatsim/material/Ir +11 -0
  250. gecatsim/material/K +11 -0
  251. gecatsim/material/Kr +11 -0
  252. gecatsim/material/La +11 -0
  253. gecatsim/material/Li +11 -0
  254. gecatsim/material/Lu +11 -0
  255. gecatsim/material/Lumex +18 -0
  256. gecatsim/material/Mg +11 -0
  257. gecatsim/material/Mn +11 -0
  258. gecatsim/material/Mo +11 -0
  259. gecatsim/material/N +11 -0
  260. gecatsim/material/Na +11 -0
  261. gecatsim/material/NaCl +16 -0
  262. gecatsim/material/Nb +11 -0
  263. gecatsim/material/Nd +11 -0
  264. gecatsim/material/Ne +11 -0
  265. gecatsim/material/Ni +11 -0
  266. gecatsim/material/O +11 -0
  267. gecatsim/material/Os +11 -0
  268. gecatsim/material/P +11 -0
  269. gecatsim/material/PMMA +20 -0
  270. gecatsim/material/PVC_flexible +20 -0
  271. gecatsim/material/PVC_rigid +20 -0
  272. gecatsim/material/Pa +11 -0
  273. gecatsim/material/Pb +11 -0
  274. gecatsim/material/Pd +11 -0
  275. gecatsim/material/Pm +11 -0
  276. gecatsim/material/Po +11 -0
  277. gecatsim/material/Pr +11 -0
  278. gecatsim/material/Pt +11 -0
  279. gecatsim/material/Ra +11 -0
  280. gecatsim/material/Rb +11 -0
  281. gecatsim/material/Re +11 -0
  282. gecatsim/material/Rh +11 -0
  283. gecatsim/material/Rn +11 -0
  284. gecatsim/material/Ru +11 -0
  285. gecatsim/material/S +11 -0
  286. gecatsim/material/Sb +11 -0
  287. gecatsim/material/Sc +11 -0
  288. gecatsim/material/Se +11 -0
  289. gecatsim/material/Si +11 -0
  290. gecatsim/material/Sm +11 -0
  291. gecatsim/material/Sn +11 -0
  292. gecatsim/material/Sr +11 -0
  293. gecatsim/material/Ta +11 -0
  294. gecatsim/material/Tb +11 -0
  295. gecatsim/material/Tc +11 -0
  296. gecatsim/material/Te +11 -0
  297. gecatsim/material/Th +11 -0
  298. gecatsim/material/Ti +11 -0
  299. gecatsim/material/Tl +11 -0
  300. gecatsim/material/Tm +11 -0
  301. gecatsim/material/U +11 -0
  302. gecatsim/material/V +11 -0
  303. gecatsim/material/W +11 -0
  304. gecatsim/material/Xe +11 -0
  305. gecatsim/material/Y +11 -0
  306. gecatsim/material/Yb +11 -0
  307. gecatsim/material/Zn +11 -0
  308. gecatsim/material/Zr +11 -0
  309. gecatsim/material/air +24 -0
  310. gecatsim/material/bone +25 -0
  311. gecatsim/material/brass +18 -0
  312. gecatsim/material/diamond +13 -0
  313. gecatsim/material/edlp/comp/ce-cs-1.dat +124 -0
  314. gecatsim/material/edlp/comp/ce-cs-10.dat +124 -0
  315. gecatsim/material/edlp/comp/ce-cs-100.dat +124 -0
  316. gecatsim/material/edlp/comp/ce-cs-11.dat +124 -0
  317. gecatsim/material/edlp/comp/ce-cs-12.dat +124 -0
  318. gecatsim/material/edlp/comp/ce-cs-13.dat +124 -0
  319. gecatsim/material/edlp/comp/ce-cs-14.dat +124 -0
  320. gecatsim/material/edlp/comp/ce-cs-15.dat +124 -0
  321. gecatsim/material/edlp/comp/ce-cs-16.dat +124 -0
  322. gecatsim/material/edlp/comp/ce-cs-17.dat +124 -0
  323. gecatsim/material/edlp/comp/ce-cs-18.dat +124 -0
  324. gecatsim/material/edlp/comp/ce-cs-19.dat +124 -0
  325. gecatsim/material/edlp/comp/ce-cs-2.dat +124 -0
  326. gecatsim/material/edlp/comp/ce-cs-20.dat +124 -0
  327. gecatsim/material/edlp/comp/ce-cs-21.dat +124 -0
  328. gecatsim/material/edlp/comp/ce-cs-22.dat +124 -0
  329. gecatsim/material/edlp/comp/ce-cs-23.dat +124 -0
  330. gecatsim/material/edlp/comp/ce-cs-24.dat +124 -0
  331. gecatsim/material/edlp/comp/ce-cs-25.dat +124 -0
  332. gecatsim/material/edlp/comp/ce-cs-26.dat +124 -0
  333. gecatsim/material/edlp/comp/ce-cs-27.dat +124 -0
  334. gecatsim/material/edlp/comp/ce-cs-28.dat +124 -0
  335. gecatsim/material/edlp/comp/ce-cs-29.dat +124 -0
  336. gecatsim/material/edlp/comp/ce-cs-3.dat +124 -0
  337. gecatsim/material/edlp/comp/ce-cs-30.dat +124 -0
  338. gecatsim/material/edlp/comp/ce-cs-31.dat +124 -0
  339. gecatsim/material/edlp/comp/ce-cs-32.dat +124 -0
  340. gecatsim/material/edlp/comp/ce-cs-33.dat +124 -0
  341. gecatsim/material/edlp/comp/ce-cs-34.dat +124 -0
  342. gecatsim/material/edlp/comp/ce-cs-35.dat +124 -0
  343. gecatsim/material/edlp/comp/ce-cs-36.dat +124 -0
  344. gecatsim/material/edlp/comp/ce-cs-37.dat +124 -0
  345. gecatsim/material/edlp/comp/ce-cs-38.dat +124 -0
  346. gecatsim/material/edlp/comp/ce-cs-39.dat +124 -0
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  1212. gecatsim/scatter/scatter_kernel.dat +0 -0
  1213. gecatsim/spectrum/XCISTspectrum.m +262 -0
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  1218. gecatsim/spectrum/tungsten_tar10.0_120_filt.dat +241 -0
  1219. gecatsim/spectrum/tungsten_tar10.0_130_filt.dat +261 -0
  1220. gecatsim/spectrum/tungsten_tar10.0_140_filt.dat +281 -0
  1221. gecatsim/spectrum/tungsten_tar10.0_70_filt.dat +141 -0
  1222. gecatsim/spectrum/tungsten_tar10.0_80_filt.dat +161 -0
  1223. gecatsim/spectrum/tungsten_tar10.0_90_filt.dat +181 -0
  1224. gecatsim/spectrum/tungsten_tar7.0_100_filt.dat +201 -0
  1225. gecatsim/spectrum/tungsten_tar7.0_110_filt.dat +221 -0
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  1232. gecatsim/spectrum/xcist_kVp100_tar7_bin1.dat +103 -0
  1233. gecatsim/spectrum/xcist_kVp120_tar7_bin1.dat +123 -0
  1234. gecatsim/spectrum/xcist_kVp140_tar7_bin1.dat +143 -0
  1235. gecatsim/spectrum/xcist_kVp80_tar7_bin1.dat +83 -0
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