catsim-test 0.0.5__cp313-cp313-manylinux_2_31_x86_64.whl

gecatsim/material/ncat_skin

@@ -0,0 +1,23 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT skin
+
+# Number of elements:
+9
+
+# Density:
+1.090000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.100000    # hydrogen
+6    0.204000    # carbon
+7    0.042000    # nitrogen
+8    0.645000    # oxygen
+15    0.002000    # phosphorus
+16    0.001000    # sulfur
+17    0.002000    # chlorine
+19    0.003000    # potassium
+26    0.001000    # iron

gecatsim/material/ncat_skull

@@ -0,0 +1,23 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT skull
+
+# Number of elements:
+9
+
+# Density:
+1.610000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.054348    # hydrogen
+6    0.230435    # carbon
+7    0.043478    # nitrogen
+8    0.472826    # oxygen
+11    0.001087    # sodium
+12    0.002174    # magnesium
+15    0.001087    # phosphorus
+16    0.003261    # sulfur
+20    0.191304    # calcium

gecatsim/material/ncat_spleen

@@ -0,0 +1,23 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT spleen
+
+# Number of elements:
+9
+
+# Density:
+1.060000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.103000    # hydrogen
+6    0.113000    # carbon
+7    0.032000    # nitrogen
+8    0.741000    # oxygen
+11    0.001000    # sodium
+15    0.003000    # phosphorus
+16    0.002000    # sulfur
+17    0.002000    # chlorine
+19    0.003000    # potassium

gecatsim/material/ncat_testis

@@ -0,0 +1,23 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT testis
+
+# Number of elements:
+9
+
+# Density:
+1.040000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.106000    # hydrogen
+6    0.099000    # carbon
+7    0.020000    # nitrogen
+8    0.766000    # oxygen
+11    0.002000    # sodium
+15    0.001000    # phosphorus
+16    0.002000    # sulfur
+17    0.002000    # chlorine
+19    0.002000    # potassium

gecatsim/material/ncat_thyroid

@@ -0,0 +1,24 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT thyroid
+
+# Number of elements:
+10
+
+# Density:
+1.050000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.104000    # hydrogen
+6    0.119000    # carbon
+7    0.024000    # nitrogen
+8    0.745000    # oxygen
+11    0.002000    # sodium
+15    0.001000    # phosphorus
+16    0.001000    # sulfur
+17    0.002000    # chlorine
+19    0.001000    # potassium
+53    0.001000    # iodine

gecatsim/material/ncat_titanium

@@ -0,0 +1,14 @@
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Elemental material: 
+# NCAT titanium
+
+# Number of elements:
+1
+
+# Density:
+4.530000
+
+# Atomic number(s) and corresponding mass fraction(s):
+22    1.000000    # titanium

gecatsim/material/ncat_water

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT water
+
+# Number of elements:
+2
+
+# Density:
+1.000000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.112000    # hydrogen
+8    0.888000    # oxygen

gecatsim/material/ncat_yellow_marrow

@@ -0,0 +1,21 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: NCAT software distribution
+# Material composition source: same as density
+
+# Material name:
+# NCAT yellow marrow
+
+# Number of elements:
+7
+
+# Density:
+0.980000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.115000    # hydrogen
+6    0.644000    # carbon
+7    0.007000    # nitrogen
+8    0.231000    # oxygen
+11    0.001000    # sodium
+16    0.001000    # sulfur
+17    0.001000    # chlorine

gecatsim/material/plexi

@@ -0,0 +1,21 @@
+# Made from a legacy file. 
+# Molecular weights source unknown.
+# Density source unknown.
+# Material composition source unknown.
+
+# Material name:
+# plexi (apparently short for Plexiglas).
+
+# Number of elements:
+3
+
+# Density:
+1.190
+ 	
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.080541    # hydrogen
+6    0.599846    # carbon
+8    0.319613    # oxygen
+
+# Note: this is a legacy material specification and is included for those who may want to repeat prior experiments that used it.
+# For new work, PMMA may be a preferred specification.

gecatsim/material/polyethylene

@@ -0,0 +1,14 @@
+% -----------------------------------------------------------------------
+%   Program Name: polyethylene                              
+%   Author: unknown
+%   Organization: GE Global Research and GE Healthcare, General Electric Company
+%   Version:  6.0.3
+%   Date:  Feb 3, 2015
+%   Class: GE Confidential. General Electric Proprietary Data (c) 2012 General Electric Company
+% -----------------------------------------------------------------------
+2
+9.300E-01 	
+1 0.143716
+6 0.856284
+
+

gecatsim/material/polyethylene_HDPE

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://en.wikipedia.org/wiki/Polyethylene#High-density_(HDPE)
+# Material composition source: same as density
+
+# Material name:
+# high density polyethylene (HDPE) - C2H4
+
+# Number of elements:
+2
+
+# Density:
+0.941000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.143724    # hydrogen
+6    0.856276    # carbon

gecatsim/material/polyethylene_LDPE

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://en.wikipedia.org/wiki/Polyethylene#Low-density_(LDPE)
+# Material composition source: same as density
+
+# Material name:
+# low density polyethylene (LDPE) - C2H4
+
+# Number of elements:
+2
+
+# Density:
+0.925000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.143724    # hydrogen
+6    0.856276    # carbon

gecatsim/material/polyethylene_MDPE

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://en.wikipedia.org/wiki/Polyethylene#Medium-density_(MDPE)
+# Material composition source: same as density
+
+# Material name:
+# medium density polyethylene (MDPE) - C2H4
+
+# Number of elements:
+2
+
+# Density:
+0.933000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.143724    # hydrogen
+6    0.856276    # carbon

gecatsim/material/polyethylene_legacy

@@ -0,0 +1,20 @@
+# Made from a legacy file. 
+# Molecular weights source unknown.
+# Density source unknown.
+# Material composition source unknown.
+
+# Material name:
+# polyethylene_legacy
+
+# Number of elements:
+2
+
+# Density:
+0.9300
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.143716    # hydrogen
+6    0.856284    # carbon
+
+# Note: this is a legacy material specification and is included for those who may want to repeat prior experiments that used it.
+# There are multiple types of polyethylene. For new work, LDPE, MDPE, HDPE, or a specification of your design may be preferred.

gecatsim/material/polystyrene

@@ -0,0 +1,18 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://en.wikipedia.org/wiki/Polystyrene
+# Material composition source: same as density
+
+# Material name:
+# polystyrene (PS)
+
+# Number of elements:
+2
+
+# Density:
+1.000000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.077426    # hydrogen
+6    0.922574    # carbon
+
+# Note: There are multiple types of polystyrene. For a specific material (e.g. for foam), a new file can be made by revising the density.

gecatsim/material/polystyrene_legacy

@@ -0,0 +1,21 @@
+# Made from a legacy file. 
+# Molecular weights source unknown.
+# Density source unknown.
+# Material composition source unknown.
+
+# Material name:
+# polystyrene_legacy
+
+# Number of elements:
+2
+
+# Density:
+1.060
+	
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.077421    # hydrogen
+6    0.922579    # carbon
+
+# Note: this is a legacy material specification and is included for those who may want to repeat prior experiments that used it.
+# There are multiple types of polystyrene. The density used here is higher than found for solid polystyrene.
+# For new work, polystyrene (for solid) or a specification of your design (e.g. for foam) may be preferred.

gecatsim/material/pvc_legacy

@@ -0,0 +1,22 @@
+# Made from a legacy file. 
+# Molecular weights source unknown.
+# Density source unknown.
+# Material composition source unknown.
+
+# Material name:
+# pvc_legacy
+
+# Number of elements:
+3
+
+# Density:
+1.406E
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.048382
+6    0.384361
+17    0.567257
+
+# Note: this is a legacy material specification and is included for those who may want to repeat prior experiments that used it.
+# There are multiple types of PVC. The density used here is higher than found for most PVC.
+# For new work, PVC_rigid, PVC_flexible or a specification of your design may be preferred.

gecatsim/material/water

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density souce: https://physics.nist.gov/PhysRefData/XrayMassCoef/tab2.html
+# Material composition source: same as density
+
+# Material name:
+# water
+
+# Number of elements:
+2
+
+# Density:
+1.000000
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111902    # hydrogen
+8    0.888098    # oxygen

gecatsim/material/water_20C

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: same as density
+
+# Material name:
+# water, 20 C
+
+# Number of elements:
+2
+
+# Density:
+0.998190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111902    # hydrogen
+8    0.888098    # oxygen

gecatsim/material/water_20C_NaCl_0p9_pct

@@ -0,0 +1,18 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 0.9% NaCl in water-NaCl solution (1.089174  mg NaCl/mL solution)
+
+# Number of elements:
+4
+
+# Density:
+1.007255
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.110895    # hydrogen
+8    0.880105    # oxygen
+11    0.003540    # sodium
+17    0.005460    # chlorine

gecatsim/material/water_20C_iodine_100mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 9.105892% iodine (100 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.098190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.101712    # hydrogen
+8    0.807229    # oxygen
+53    0.091059    # iodine

gecatsim/material/water_20C_iodine_10mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 0.991877% iodine (10 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.008190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.110792    # hydrogen
+8    0.879289    # oxygen
+53    0.009919    # iodine

gecatsim/material/water_20C_iodine_15mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 1.480473% iodine (15 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.013190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.110245    # hydrogen
+8    0.874950    # oxygen
+53    0.014805    # iodine

gecatsim/material/water_20C_iodine_1mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 0.100081% iodine (1 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+0.999190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111790    # hydrogen
+8    0.887209    # oxygen
+53    0.001001    # iodine

gecatsim/material/water_20C_iodine_20mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 1.96427% iodine (20 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.018190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.109704    # hydrogen
+8    0.870654    # oxygen
+53    0.019643    # iodine

gecatsim/material/water_20C_iodine_2mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 0.199962% iodine (2 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.000190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111678    # hydrogen
+8    0.886322    # oxygen
+53    0.002000    # iodine

gecatsim/material/water_20C_iodine_30mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 2.917749% iodine (30 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.028190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.108637    # hydrogen
+8    0.862186    # oxygen
+53    0.029177    # iodine

gecatsim/material/water_20C_iodine_40mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 3.852859% iodine (40 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.038190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.107590    # hydrogen
+8    0.853881    # oxygen
+53    0.038529    # iodine

gecatsim/material/water_20C_iodine_50mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 4.770128% iodine (50 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.048190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.106564    # hydrogen
+8    0.845735    # oxygen
+53    0.047701    # iodine

gecatsim/material/water_20C_iodine_5mg

@@ -0,0 +1,17 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: modified water
+
+# Material name:
+# water at 20 deg C, with 0.49841% iodine (5 mg iodine/mL water-iodine solution)
+
+# Number of elements:
+3
+
+# Density:
+1.003190
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111344    # hydrogen
+8    0.883672    # oxygen
+53    0.004984    # iodine

gecatsim/material/water_37C

@@ -0,0 +1,16 @@
+# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
+# Density source: https://www.engineeringtoolbox.com/water-density-specific-weight-d_595.html?vA=37&units=C#
+# Material composition source: same as density
+
+# Material name:
+# water, 37 C
+
+# Number of elements:
+2
+
+# Density:
+0.99336
+
+# Atomic number(s) and corresponding mass fraction(s):
+1    0.111902    # hydrogen
+8    0.888098    # oxygen

gecatsim/phantom/CTDI_16cm_WaterAirPEBoneChambers.ppm

@@ -0,0 +1,62 @@
+materialList = {'pmma' 'water' 'air' 'polyethylene' 'ICRU_skeleton_cortical_bone_adult' };
+
+object.center(1,:) = [0.000000 0.000000 0.000000];
+object.half_axes(1,:) = [80.000000 80.000000 75.000000];
+object.euler_angs(1,:) = [0.000000 0.000000 0.000000];
+object.density(1) = 1.000000;
+object.type(1) = 2;
+object.material(1) = 1;
+object.axial_lims(1,:) = [0 0];
+object.shape(1) = 0;
+object.clip{1} = [];
+
+object.center(2,:) = [0.000000 0.000000 0.000000];
+object.half_axes(2,:) = [6.500000 6.500000 5.000000];
+object.euler_angs(2,:) = [0.000000 0.000000 0.000000];
+object.density(2) = 1.000000;
+object.type(2) = 2;
+object.material(2) = 2;
+object.axial_lims(2,:) = [0 0];
+object.shape(2) = 0;
+object.clip{2} = [];
+
+object.center(3,:) = [0.000000 70.000000 0.000000];
+object.half_axes(3,:) = [6.500000 6.500000 5.000000];
+object.euler_angs(3,:) = [0.000000 0.000000 0.000000];
+object.density(3) = 1.000000;
+object.type(3) = 2;
+object.material(3) = 2;
+object.axial_lims(3,:) = [0 0];
+object.shape(3) = 0;
+object.clip{3} = [];
+
+object.center(4,:) = [70.000000 0.000000 4.000000];
+object.half_axes(4,:) = [6.500000 6.500000 5.000000];
+object.euler_angs(4,:) = [0.000000 0.000000 0.000000];
+object.density(4) = 1.000000;
+object.type(4) = 2;
+object.material(4) = 3;
+object.axial_lims(4,:) = [0 0];
+object.shape(4) = 0;
+object.clip{4} = [];
+
+object.center(5,:) = [0.000000 -70.000000 0.000000];
+object.half_axes(5,:) = [6.500000 6.500000 5.000000];
+object.euler_angs(5,:) = [0.000000 0.000000 0.000000];
+object.density(5) = 1.000000;
+object.type(5) = 2;
+object.material(5) = 4;
+object.axial_lims(5,:) = [0 0];
+object.shape(5) = 0;
+object.clip{5} = [];
+
+object.center(6,:) = [-70.000000 0.000000 -4.000000];
+object.half_axes(6,:) = [6.500000 6.500000 5.000000];
+object.euler_angs(6,:) = [0.000000 0.000000 0.000000];
+object.density(6) = 1.000000;
+object.type(6) = 2;
+object.material(6) = 5;
+object.axial_lims(6,:) = [0 0];
+object.shape(6) = 0;
+object.clip{6} = [];
+