catsim-test 0.0.5__cp313-cp313-manylinux_2_31_x86_64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- catsim_test-0.0.5.dist-info/METADATA +5 -0
- catsim_test-0.0.5.dist-info/RECORD +1235 -0
- catsim_test-0.0.5.dist-info/WHEEL +5 -0
- catsim_test-0.0.5.dist-info/licenses/LICENSE +29 -0
- catsim_test-0.0.5.dist-info/sboms/auditwheel.cdx.json +1 -0
- catsim_test-0.0.5.dist-info/top_level.txt +2 -0
- catsim_test.libs/libgomp-98b21ff3.so.1.0.0 +0 -0
- dummy.cpython-313-x86_64-linux-gnu.so +0 -0
- gecatsim/__init__.py +20 -0
- gecatsim/bowtie/large.txt +891 -0
- gecatsim/bowtie/medium.txt +891 -0
- gecatsim/bowtie/small.txt +891 -0
- gecatsim/cfg/Phantom_Default.cfg +7 -0
- gecatsim/cfg/Physics_Default.cfg +38 -0
- gecatsim/cfg/Protocol_Default.cfg +33 -0
- gecatsim/cfg/Recon_Default.cfg +22 -0
- gecatsim/cfg/Scanner_Default.cfg +31 -0
- gecatsim/clib_build/BuildLinux64 +6 -0
- gecatsim/clib_build/BuildWin64.bat +17 -0
- gecatsim/clib_build/MakeMacOS +48 -0
- gecatsim/clib_build/MakeVariables_1 +19 -0
- gecatsim/clib_build/MakeVariables_2 +5 -0
- gecatsim/clib_build/MakeVariables_3 +33 -0
- gecatsim/clib_build/MakeVariables_3.1 +32 -0
- gecatsim/clib_build/MakeWindows64 +45 -0
- gecatsim/clib_build/Makefile +41 -0
- gecatsim/clib_build/readme.md +13 -0
- gecatsim/clib_build/src/BaseObject.cpp +144 -0
- gecatsim/clib_build/src/BaseObject.h +74 -0
- gecatsim/clib_build/src/ClipPlane.cpp +83 -0
- gecatsim/clib_build/src/ClipPlane.h +28 -0
- gecatsim/clib_build/src/CrossSection.cpp +179 -0
- gecatsim/clib_build/src/CrossSection.hpp +27 -0
- gecatsim/clib_build/src/CrossSectionHandler.cpp +160 -0
- gecatsim/clib_build/src/CrossSectionHandler.hpp +72 -0
- gecatsim/clib_build/src/Cube.cpp +144 -0
- gecatsim/clib_build/src/Cube.h +26 -0
- gecatsim/clib_build/src/Cylinder.cpp +156 -0
- gecatsim/clib_build/src/Cylinder.h +25 -0
- gecatsim/clib_build/src/DD2Back.c +332 -0
- gecatsim/clib_build/src/DD2ParProj.c +377 -0
- gecatsim/clib_build/src/DD2Proj.c +333 -0
- gecatsim/clib_build/src/DD2WBack.c +350 -0
- gecatsim/clib_build/src/DD3.hpp +423 -0
- gecatsim/clib_build/src/DD3Proj.cpp +519 -0
- gecatsim/clib_build/src/DD3Proj_roi_notrans_mm.cpp +585 -0
- gecatsim/clib_build/src/DD3WBack.c +491 -0
- gecatsim/clib_build/src/DD3_roi_notrans_mm.hpp +272 -0
- gecatsim/clib_build/src/Detector.cpp +389 -0
- gecatsim/clib_build/src/Detector.hpp +134 -0
- gecatsim/clib_build/src/Interpolate.cpp +58 -0
- gecatsim/clib_build/src/Intersection.cpp +198 -0
- gecatsim/clib_build/src/Intersection.h +36 -0
- gecatsim/clib_build/src/MatVec.cpp +262 -0
- gecatsim/clib_build/src/MatVec.h +68 -0
- gecatsim/clib_build/src/Objects.cpp +23 -0
- gecatsim/clib_build/src/Objects.hpp +90 -0
- gecatsim/clib_build/src/Phantom.cpp +169 -0
- gecatsim/clib_build/src/Phantom.hpp +43 -0
- gecatsim/clib_build/src/Photon.cpp +168 -0
- gecatsim/clib_build/src/Photon.hpp +56 -0
- gecatsim/clib_build/src/RD3Back.cpp +357 -0
- gecatsim/clib_build/src/RD3Intersections.cpp +154 -0
- gecatsim/clib_build/src/RD3bench.cpp +505 -0
- gecatsim/clib_build/src/Sphere.cpp +43 -0
- gecatsim/clib_build/src/Sphere.h +25 -0
- gecatsim/clib_build/src/Transformation.cpp +104 -0
- gecatsim/clib_build/src/Transformation.h +37 -0
- gecatsim/clib_build/src/TreePhantom.cpp +138 -0
- gecatsim/clib_build/src/TreePhantom.h +27 -0
- gecatsim/clib_build/src/Volume.cpp +101 -0
- gecatsim/clib_build/src/Volume.hpp +28 -0
- gecatsim/clib_build/src/analytic_projector.c +2433 -0
- gecatsim/clib_build/src/analytic_projector.h +235 -0
- gecatsim/clib_build/src/compt.cpp +400 -0
- gecatsim/clib_build/src/compt2.cpp +558 -0
- gecatsim/clib_build/src/compt3.cpp +607 -0
- gecatsim/clib_build/src/ct_nurbs.h +214 -0
- gecatsim/clib_build/src/extractsino.c +42 -0
- gecatsim/clib_build/src/fm_gethostid.c +23 -0
- gecatsim/clib_build/src/fm_getrandpid.c +31 -0
- gecatsim/clib_build/src/gemsfilt.c +1084 -0
- gecatsim/clib_build/src/getMemorySize.cpp +105 -0
- gecatsim/clib_build/src/getMemorySize.h +5 -0
- gecatsim/clib_build/src/hull2.c +77 -0
- gecatsim/clib_build/src/intersections.c +131 -0
- gecatsim/clib_build/src/label.h +10 -0
- gecatsim/clib_build/src/main.cpp +609 -0
- gecatsim/clib_build/src/make_volume.c +573 -0
- gecatsim/clib_build/src/nCAT_main.c +6343 -0
- gecatsim/clib_build/src/negative_log.cpp +233 -0
- gecatsim/clib_build/src/negative_log.h +23 -0
- gecatsim/clib_build/src/pd2dbpcurved.c +98 -0
- gecatsim/clib_build/src/pd2dbpflat.c +101 -0
- gecatsim/clib_build/src/pd3dbpsemi.c +177 -0
- gecatsim/clib_build/src/phantom.l +72 -0
- gecatsim/clib_build/src/phantom.lex.c +1770 -0
- gecatsim/clib_build/src/phantom.tab.cpp +2126 -0
- gecatsim/clib_build/src/phantom.tab.hpp +126 -0
- gecatsim/clib_build/src/phantom.y +624 -0
- gecatsim/clib_build/src/rndpoi.c +793 -0
- gecatsim/clib_build/src/spline.c +81 -0
- gecatsim/clib_build/src/spline.h +6 -0
- gecatsim/clib_build/src/timer.c +64 -0
- gecatsim/clib_build/src/viewshift.c +25 -0
- gecatsim/clib_build/src/voxelized_projector.cpp +683 -0
- gecatsim/clib_build/src/xybowtie.c +76 -0
- gecatsim/dose/data/dosereconkernel_mthd4.mat +0 -0
- gecatsim/dose/data/scatter_E_loss_fraction.mat +0 -0
- gecatsim/dose/data/weighted_scatter_energy_by_spec.mat +0 -0
- gecatsim/dose/examples/dose_doserecon.cfg +16 -0
- gecatsim/dose/examples/dose_phantom.cfg +6 -0
- gecatsim/dose/examples/dose_physics.cfg +18 -0
- gecatsim/dose/examples/dose_protocol.cfg +15 -0
- gecatsim/dose/examples/dose_recon.cfg +9 -0
- gecatsim/dose/examples/dose_scanner.cfg +29 -0
- gecatsim/dose/examples/run.py +37 -0
- gecatsim/dose/lib/Dose_Recon_Library_Linux64.so +0 -0
- gecatsim/dose/lib/Dose_Recon_Library_Windows64.dll +0 -0
- gecatsim/dose/pyfiles/C_DD3Dose.py +84 -0
- gecatsim/dose/pyfiles/Combine_Spectrum_Bowtie_FlatFilter.py +15 -0
- gecatsim/dose/pyfiles/DoseConv.py +87 -0
- gecatsim/dose/pyfiles/GetMuByProcess.py +57 -0
- gecatsim/dose/pyfiles/__init__.py +0 -0
- gecatsim/dose/pyfiles/brconvol_matlab.py +67 -0
- gecatsim/dose/pyfiles/calcDetectorFlux.py +54 -0
- gecatsim/dose/pyfiles/catdoserecon.py +225 -0
- gecatsim/dose/pyfiles/doseconvol.py +52 -0
- gecatsim/dose/pyfiles/get_voxel_stopping_power.py +35 -0
- gecatsim/dose/pyfiles/img2vol.py +57 -0
- gecatsim/dose/pyfiles/xyfovimg.py +30 -0
- gecatsim/dose/readme.md +4 -0
- gecatsim/dose/src/DD3.hpp +371 -0
- gecatsim/dose/src/DD3Dose.cpp +787 -0
- gecatsim/dose/src/DD3Dose.hpp +22 -0
- gecatsim/dose/src/DD3Dose.i +23 -0
- gecatsim/dose/src/DD3Energy_clean.cpp +1464 -0
- gecatsim/dose/src/DD3Proj.cpp +504 -0
- gecatsim/dose/src/DD3Proj.hpp +20 -0
- gecatsim/dose/src/DD3Proj_mm.cpp +561 -0
- gecatsim/dose/src/DD3Proj_mm.hpp +21 -0
- gecatsim/dose/src/Win32_Build.bat +17 -0
- gecatsim/dose/src/Win64_Build.bat +20 -0
- gecatsim/examples/Catvoxel_Sample.py +53 -0
- gecatsim/examples/DD3Proj_mm_Sample.py +60 -0
- gecatsim/examples/GetMu_Sample.py +24 -0
- gecatsim/examples/Sim_Recon_Sample.py +45 -0
- gecatsim/examples/Sim_Recon_Sample_PCCT.py +69 -0
- gecatsim/examples/Sim_Sample.py +32 -0
- gecatsim/examples/Sim_Sample_Analyic.py +44 -0
- gecatsim/examples/Sim_Sample_Helical.py +32 -0
- gecatsim/examples/Sim_Sample_Hybrid.py +42 -0
- gecatsim/examples/Sim_Sample_PCCT.py +72 -0
- gecatsim/examples/Sim_Sample_Polygonal.py +47 -0
- gecatsim/examples/Sim_Sample_Scatter.py +38 -0
- gecatsim/examples/Sim_Sample_XCAT.py +50 -0
- gecatsim/examples/cfg/Phantom_Sample.cfg +6 -0
- gecatsim/examples/cfg/Phantom_Sample_Analytic.cfg +6 -0
- gecatsim/examples/cfg/Phantom_Sample_Hybrid.cfg +7 -0
- gecatsim/examples/cfg/Phantom_Sample_Polygonal.cfg +6 -0
- gecatsim/examples/cfg/Phantom_Sample_XCAT.cfg +6 -0
- gecatsim/examples/cfg/Physics_Sample.cfg +41 -0
- gecatsim/examples/cfg/Protocol_Sample_Helical.cfg +33 -0
- gecatsim/examples/cfg/Protocol_Sample_axial.cfg +33 -0
- gecatsim/examples/cfg/Recon_Sample_2d.cfg +6 -0
- gecatsim/examples/cfg/Recon_Sample_Helical.cfg +8 -0
- gecatsim/examples/cfg/Scanner_PCCT.cfg +30 -0
- gecatsim/examples/cfg/Scanner_Sample_generic.cfg +29 -0
- gecatsim/examples/vct_examples/Phantom_Sample_Analytic.cfg +6 -0
- gecatsim/examples/vct_examples/Physics_Sample.cfg +41 -0
- gecatsim/examples/vct_examples/Protocol_Sample_axial.cfg +33 -0
- gecatsim/examples/vct_examples/Recon_Sample_2d.cfg +6 -0
- gecatsim/examples/vct_examples/Scanner_Sample_generic.cfg +31 -0
- gecatsim/examples/vct_examples/read.md +1 -0
- gecatsim/focal_spot/readme.md +31 -0
- gecatsim/focal_spot/vct_large_fs.npz +0 -0
- gecatsim/focal_spot/vct_small_fs.npz +0 -0
- gecatsim/lib/libcatsim.so +0 -0
- gecatsim/lib/libcatsim64.dll +0 -0
- gecatsim/lib/libcatsim_macos.so +0 -0
- gecatsim/lib/pthreadGC2_x64.dll +0 -0
- gecatsim/lib/pthreads-2-9-1-release.zip +0 -0
- gecatsim/material/Ac +11 -0
- gecatsim/material/Ag +11 -0
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- gecatsim/material/Br +11 -0
- gecatsim/material/C +11 -0
- gecatsim/material/CIRS_adipose_adult2 +20 -0
- gecatsim/material/CIRS_adipose_adult3 +20 -0
- gecatsim/material/CIRS_bone_10yo +21 -0
- gecatsim/material/CIRS_bone_1yo +21 -0
- gecatsim/material/CIRS_bone_5yo +21 -0
- gecatsim/material/CIRS_bone_adult_and_15yo +21 -0
- gecatsim/material/CIRS_bone_newborn +21 -0
- gecatsim/material/CIRS_liver_adult +20 -0
- gecatsim/material/CIRS_lung_inhale +20 -0
- gecatsim/material/CIRS_plastic_water_LR +20 -0
- gecatsim/material/CIRS_spinal_cord +20 -0
- gecatsim/material/CZT +5 -0
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- gecatsim/material/ICRU_blood_adult +24 -0
- gecatsim/material/ICRU_brain_adult +26 -0
- gecatsim/material/ICRU_breast_adult2 +22 -0
- gecatsim/material/ICRU_eye_lens_adult +22 -0
- gecatsim/material/ICRU_kidney_adult +24 -0
- gecatsim/material/ICRU_liver_adult +23 -0
- gecatsim/material/ICRU_lung_adult_healthy +23 -0
- gecatsim/material/ICRU_muscle_adult +23 -0
- gecatsim/material/ICRU_pancreas_adult +23 -0
- gecatsim/material/ICRU_skeleton_cortical_bone_adult +23 -0
- gecatsim/material/ICRU_skin_adult +23 -0
- gecatsim/material/ICRU_spleen_adult +23 -0
- gecatsim/material/ICRU_testis_adult +23 -0
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% Program Name: re-ff-96.dat
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% -----------------------------------------------------------------------
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% Program Name: re-ff-97.dat
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% See http://cern.ch/geant4/license for details on the copyright holders.
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% -----------------------------------------------------------------------
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% -----------------------------------------------------------------------
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% Program Name: re-ff-98.dat
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% Author: the Geant4 Collaboration
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% Class: Public
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% See http://cern.ch/geant4/license for details on the copyright holders.
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% -----------------------------------------------------------------------
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% Program Name: re-ff-99.dat
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% Author: the Geant4 Collaboration
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% Organization: the Geant4 Collaboration
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% Version: unknown
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% Date: circa 2006
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% Class: Public
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% Copyright (c) Copyright Holders of the Geant4 Collaboration, 1994-2006.
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% See http://cern.ch/geant4/license for details on the copyright holders.
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% All rights not expressly granted under this license are reserved.
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% -----------------------------------------------------------------------
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# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
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# Density source: NCAT software distribution
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# Material composition source: same as density
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# Material name:
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# NCAT adipose
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|
+
|
|
8
|
+
# Number of elements:
|
|
9
|
+
5
|
|
10
|
+
|
|
11
|
+
# Density:
|
|
12
|
+
0.920000
|
|
13
|
+
|
|
14
|
+
# Atomic number(s) and corresponding mass fraction(s):
|
|
15
|
+
1 0.120120 # hydrogen
|
|
16
|
+
6 0.640641 # carbon
|
|
17
|
+
7 0.008008 # nitrogen
|
|
18
|
+
8 0.229229 # oxygen
|
|
19
|
+
15 0.002002 # phosphorus
|
|
@@ -0,0 +1,18 @@
|
|
|
1
|
+
# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
|
|
2
|
+
# Density source: NCAT software distribution
|
|
3
|
+
# Material composition source: same as density
|
|
4
|
+
|
|
5
|
+
# Material name:
|
|
6
|
+
# NCAT air
|
|
7
|
+
|
|
8
|
+
# Number of elements:
|
|
9
|
+
4
|
|
10
|
+
|
|
11
|
+
# Density:
|
|
12
|
+
0.001205
|
|
13
|
+
|
|
14
|
+
# Atomic number(s) and corresponding mass fraction(s):
|
|
15
|
+
6 0.000124 # carbon
|
|
16
|
+
7 0.755268 # nitrogen
|
|
17
|
+
8 0.231781 # oxygen
|
|
18
|
+
17 0.012827 # chlorine
|
|
@@ -0,0 +1,14 @@
|
|
|
1
|
+
# Density source: NCAT software distribution
|
|
2
|
+
# Material composition source: same as density
|
|
3
|
+
|
|
4
|
+
# Elemental material:
|
|
5
|
+
# NCAT aluminum
|
|
6
|
+
|
|
7
|
+
# Number of elements:
|
|
8
|
+
1
|
|
9
|
+
|
|
10
|
+
# Density:
|
|
11
|
+
2.694100
|
|
12
|
+
|
|
13
|
+
# Atomic number(s) and corresponding mass fraction(s):
|
|
14
|
+
13 1.000000 # aluminum
|
|
@@ -0,0 +1,23 @@
|
|
|
1
|
+
# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
|
|
2
|
+
# Density source: NCAT software distribution
|
|
3
|
+
# Material composition source: same as density
|
|
4
|
+
|
|
5
|
+
# Material name:
|
|
6
|
+
# NCAT bladder
|
|
7
|
+
|
|
8
|
+
# Number of elements:
|
|
9
|
+
9
|
|
10
|
+
|
|
11
|
+
# Density:
|
|
12
|
+
1.040000
|
|
13
|
+
|
|
14
|
+
# Atomic number(s) and corresponding mass fraction(s):
|
|
15
|
+
1 0.105000 # hydrogen
|
|
16
|
+
6 0.096000 # carbon
|
|
17
|
+
7 0.026000 # nitrogen
|
|
18
|
+
8 0.761000 # oxygen
|
|
19
|
+
11 0.002000 # sodium
|
|
20
|
+
15 0.002000 # phosphorus
|
|
21
|
+
16 0.002000 # sulfur
|
|
22
|
+
17 0.003000 # chlorine
|
|
23
|
+
19 0.003000 # potassium
|
|
@@ -0,0 +1,24 @@
|
|
|
1
|
+
# Molecular weights from https://www.nist.gov/pml/atomic-weights-and-isotopic-compositions-relative-atomic-masses.
|
|
2
|
+
# Density source: NCAT software distribution
|
|
3
|
+
# Material composition source: same as density
|
|
4
|
+
|
|
5
|
+
# Material name:
|
|
6
|
+
# NCAT blood
|
|
7
|
+
|
|
8
|
+
# Number of elements:
|
|
9
|
+
10
|
|
10
|
+
|
|
11
|
+
# Density:
|
|
12
|
+
1.060000
|
|
13
|
+
|
|
14
|
+
# Atomic number(s) and corresponding mass fraction(s):
|
|
15
|
+
1 0.102000 # hydrogen
|
|
16
|
+
6 0.110000 # carbon
|
|
17
|
+
7 0.033000 # nitrogen
|
|
18
|
+
8 0.745000 # oxygen
|
|
19
|
+
11 0.001000 # sodium
|
|
20
|
+
15 0.001000 # phosphorus
|
|
21
|
+
16 0.002000 # sulfur
|
|
22
|
+
17 0.003000 # chlorine
|
|
23
|
+
19 0.002000 # potassium
|
|
24
|
+
26 0.001000 # iron
|