oncoprintjs 5.0.3 → 6.0.1

package/dist/js/CachedProperty.d.ts

@@ -1,10 +1,10 @@
-export default class CachedProperty<T> {
-    private value;
-    private updateFn;
-    private bound_properties;
-    constructor(value: T, updateFn: (...args: any[]) => T);
-    update(...args: any[]): void;
-    get(): T;
-    updateAndGet(): T;
-    addBoundProperty(cached_property: CachedProperty<any>): void;
-}
+export default class CachedProperty<T> {
+    private value;
+    private updateFn;
+    private bound_properties;
+    constructor(value: T, updateFn: (...args: any[]) => T);
+    update(...args: any[]): void;
+    get(): T;
+    updateAndGet(): T;
+    addBoundProperty(cached_property: CachedProperty<any>): void;
+}

package/dist/js/binarysearch.d.ts

@@ -1 +1 @@
-export default function binarysearch<T>(array: T[], target_key: number, keyFn: (t: T) => number, return_closest_lower_if_not_found?: boolean): number;
+export default function binarysearch<T>(array: T[], target_key: number, keyFn: (t: T) => number, return_closest_lower_if_not_found?: boolean): number;

package/dist/js/bucketsort.d.ts

@@ -1,16 +1,16 @@
-export declare type SortingVector = (number | string)[];
-declare type CompareEquals<T> = (a: T, b: T) => number;
-declare type GetVector<T> = (t: T) => SortingVector;
-export declare function bucketSort<T>(array: T[], getVector?: (t: T) => SortingVector, compareEquals?: CompareEquals<T>): T[];
-export declare function stringSort<T>(array: T[], getString?: (t: T) => string): T[];
-export declare function stringToVector(string: string): number[];
-export declare function compareFull<T>(d1: T, d2: T, getVector: GetVector<T>, compareEquals?: CompareEquals<T>): number;
-export declare function compare(vector1: SortingVector, vector2: SortingVector): number;
-export declare function bucketSortHelper<T>(array: T[], getVector: GetVector<T>, sort_range_lower_index_incl: number, sort_range_upper_index_excl: number, vector_index: number, isStringElt: boolean): {
-    sorted_array: T[];
-    bucket_ranges: {
-        lower_index_incl: number;
-        upper_index_excl: number;
-    }[];
-};
-export {};
+export declare type SortingVector = (number | string)[];
+declare type CompareEquals<T> = (a: T, b: T) => number;
+declare type GetVector<T> = (t: T) => SortingVector;
+export declare function bucketSort<T>(array: T[], getVector?: (t: T) => SortingVector, compareEquals?: CompareEquals<T>): T[];
+export declare function stringSort<T>(array: T[], getString?: (t: T) => string): T[];
+export declare function stringToVector(string: string): number[];
+export declare function compareFull<T>(d1: T, d2: T, getVector: GetVector<T>, compareEquals?: CompareEquals<T>): number;
+export declare function compare(vector1: SortingVector, vector2: SortingVector): number;
+export declare function bucketSortHelper<T>(array: T[], getVector: GetVector<T>, sort_range_lower_index_incl: number, sort_range_upper_index_excl: number, vector_index: number, isStringElt: boolean): {
+    sorted_array: T[];
+    bucket_ranges: {
+        lower_index_incl: number;
+        upper_index_excl: number;
+    }[];
+};
+export {};

package/dist/js/clustering.d.ts

@@ -1,15 +1,15 @@
-import { CaseItem, CasesAndEntities, EntityItem } from "./workers/clustering-worker";
-/**
- * Use: cbio.stat.hclusterCases(a);
+import { CaseItem, CasesAndEntities, EntityItem } from './workers/clustering-worker';
+/**
+ * Use: cbio.stat.hclusterCases(a);
 
- * @return a deferred which gets resolved with the clustering result
- *   when the clustering is done.
- */
-export declare function hclusterColumns(casesAndEntitites: CasesAndEntities): Promise<CaseItem[]>;
-/**
- * Use: hclusterGeneticEntities(a);
- *
- * @return a deferred which gets resolved with the clustering result
- *   when the clustering is done.
- */
-export declare function hclusterTracks(casesAndEntitites: CasesAndEntities): Promise<EntityItem[]>;
+ * @return a deferred which gets resolved with the clustering result
+ *   when the clustering is done.
+ */
+export declare function hclusterColumns(casesAndEntitites: CasesAndEntities): Promise<CaseItem[]>;
+/**
+ * Use: hclusterGeneticEntities(a);
+ *
+ * @return a deferred which gets resolved with the clustering result
+ *   when the clustering is done.
+ */
+export declare function hclusterTracks(casesAndEntitites: CasesAndEntities): Promise<EntityItem[]>;

package/dist/js/extractrgba.d.ts

@@ -1,4 +1,4 @@
-import { RGBAColor } from "./oncoprintruleset";
-export default function extractrgba(str: string): RGBAColor;
-export declare function hexToRGBA(str: string): RGBAColor;
-export declare function rgbaToHex(rgba: RGBAColor): string;
+import { RGBAColor } from './oncoprintruleset';
+export default function extractrgba(str: string): RGBAColor;
+export declare function hexToRGBA(str: string): RGBAColor;
+export declare function rgbaToHex(rgba: RGBAColor): string;

package/dist/js/haselementsininterval.d.ts

@@ -1 +1 @@
-export default function haselementsininterval<T>(sorted_list: T[], valueFn: (t: T) => number, lower_inc_val: number, upper_exc_val: number): boolean;
+export default function haselementsininterval<T>(sorted_list: T[], valueFn: (t: T) => number, lower_inc_val: number, upper_exc_val: number): boolean;

package/dist/js/heatmapcolors.d.ts

@@ -1,4 +1,5 @@
-declare const _default: {
-    [themeName: string]: [number, number, number, number][];
-};
-export default _default;
+import { RGBAColor } from './oncoprintruleset';
+declare const _default: {
+    [themeName: string]: RGBAColor[];
+};
+export default _default;

package/dist/js/makesvgelement.d.ts

@@ -1 +1 @@
-export default function makesvgelement(tag: string, attrs: any): SVGElement;
+export default function makesvgelement(tag: string, attrs: any): SVGElement;

package/dist/js/modelutils.d.ts

@@ -1,7 +1,7 @@
-import OncoprintModel, { TrackGroupProp, TrackProp } from "./oncoprintmodel";
-export declare function calculateTrackTops(model: OncoprintModel, zoomed: boolean): TrackProp<number>;
-export declare function calculateHeaderTops(model: OncoprintModel, zoomed: boolean): TrackGroupProp<number>;
-export declare function calculateTrackAndHeaderTops(model: OncoprintModel, zoomed: boolean): {
-    trackTops: TrackProp<number>;
-    headerTops: TrackGroupProp<number>;
-};
+import OncoprintModel, { TrackGroupProp, TrackProp } from './oncoprintmodel';
+export declare function calculateTrackTops(model: OncoprintModel, zoomed: boolean): TrackProp<number>;
+export declare function calculateHeaderTops(model: OncoprintModel, zoomed: boolean): TrackGroupProp<number>;
+export declare function calculateTrackAndHeaderTops(model: OncoprintModel, zoomed: boolean): {
+    trackTops: TrackProp<number>;
+    headerTops: TrackGroupProp<number>;
+};

package/dist/js/oncoprint.d.ts

@@ -1,170 +1,168 @@
-/// <reference types="jquery" />
-import './polyfill';
-import OncoprintModel, { ColumnId, ColumnLabel, ColumnProp, CustomTrackOption, Datum, SortConfig, TrackGroupHeader, TrackGroupIndex, TrackId, TrackSortDirection, TrackSortSpecification, TrackTooltipFn, UserTrackSpec } from "./oncoprintmodel";
-import OncoprintWebGLCellView from './oncoprintwebglcellview';
-import OncoprintLabelView from './oncoprintlabelview';
-import { RuleSetParams } from './oncoprintruleset';
-import OncoprintTrackOptionsView from './oncoprinttrackoptionsview';
-import OncoprintLegendView from './oncoprintlegendrenderer';
-import OncoprintTrackInfoView from './oncoprinttrackinfoview';
-import OncoprintMinimapView, { MinimapViewportSpec } from './oncoprintminimapview';
-import OncoprintHeaderView from "./oncoprintheaderview";
-export * from "./oncoprintruleset";
-export * from "./oncoprintmodel";
-export { default as shapeToSvg } from "./oncoprintshapetosvg";
-export declare type InitParams = {
-    init_cell_width?: number;
-    init_cell_padding?: number;
-    cell_padding_off_cell_width_threshold?: number;
-    init_horz_zoom?: number;
-    init_vert_zoom?: number;
-    init_track_group_padding?: number;
-    init_cell_padding_on?: boolean;
-    max_height?: number;
-};
-export declare type HorzZoomCallback = (zoom: number) => void;
-export declare type MinimapCloseCallback = () => void;
-export declare type CellMouseOverCallback = (uid: ColumnId | null, track_id?: TrackId) => void;
-export declare type CellClickCallback = (uid: ColumnId | null, track_id?: TrackId) => void;
-export declare type ClipboardChangeCallback = (ids: ColumnId[]) => void;
-export default class Oncoprint {
-    private ctr_selector;
-    private width;
-    private lastSortId;
-    private incrementLastSortId;
-    destroyed: boolean;
-    webgl_unavailable: boolean;
-    private $ctr;
-    private $oncoprint_ctr;
-    private $cell_div;
-    private $header_div;
-    private $legend_div;
-    private $track_options_div;
-    private $track_info_div;
-    private $dummy_scroll_div;
-    private $minimap_div;
-    private $cell_canvas;
-    private $cell_overlay_canvas;
-    model: OncoprintModel;
-    header_view: OncoprintHeaderView;
-    cell_view: OncoprintWebGLCellView;
-    minimap_view: OncoprintMinimapView;
-    track_options_view: OncoprintTrackOptionsView;
-    track_info_view: OncoprintTrackInfoView;
-    label_view: OncoprintLabelView;
-    legend_view: OncoprintLegendView;
-    private keep_horz_zoomed_to_fit;
-    private keep_horz_zoomed_to_fit_ids;
-    private pending_resize_and_organize;
-    private horz_zoom_callbacks;
-    private minimap_close_callbacks;
-    private cell_mouse_over_callbacks;
-    private cell_click_callbacks;
-    private id_clipboard;
-    private clipboard_change_callbacks;
-    private target_dummy_scroll_left;
-    private target_dummy_scroll_top;
-    private getCellViewHeight;
-    constructor(ctr_selector: string, width: number, params?: InitParams);
-    private _SetLegendTop;
-    private setLegendTopAfterTimeout;
-    private setHeight;
-    private resizeAndOrganize;
-    private resizeAndOrganizeAfterTimeout;
-    private maxOncoprintScrollLeft;
-    private maxOncoprintScrollTop;
-    private maxDummyScrollDivScroll;
-    setMinimapVisible(visible: boolean): void;
-    scrollTo(left: number): void;
-    onHorzZoom(callback: HorzZoomCallback): void;
-    onMinimapClose(callback: MinimapCloseCallback): void;
-    moveTrack(target_track: TrackId, new_previous_track: TrackId): void;
-    setTrackGroupOrder(index: TrackGroupIndex, track_order: TrackId[], dont_sort?: boolean): void;
-    setTrackGroupLegendOrder(group_order: TrackGroupIndex[]): void;
-    keepSorted(keep_sorted?: boolean): void;
-    addTracks(params_list: UserTrackSpec<Datum>[]): number[];
-    removeTrack(track_id: TrackId): void;
-    removeTracks(track_ids: TrackId[]): void;
-    getTracks(): number[];
-    removeAllTracks(): void;
-    removeExpansionTracksFor(track_id: TrackId): void;
-    disableTrackExpansion(track_id: TrackId): void;
-    enableTrackExpansion(track_id: TrackId): void;
-    removeAllExpansionTracksInGroup(index: TrackGroupIndex): void;
-    setHorzZoomToFit(ids: ColumnId[]): void;
-    updateHorzZoomToFitIds(ids: ColumnId[]): void;
-    private updateHorzZoomToFit;
-    private getHorzZoomToFit;
-    private executeHorzZoomCallbacks;
-    private executeMinimapCloseCallbacks;
-    private doCellMouseOver;
-    private doCellClick;
-    getHorzZoom(): number;
-    setHorzZoomCentered(z: number): void;
-    setHorzZoom(z: number, still_keep_horz_zoomed_to_fit?: boolean): number;
-    getVertZoom(): number;
-    setVertZoom(z: number): number;
-    private doSetScroll;
-    private setDummyScrollDivScroll;
-    setScroll(scroll_left: number, scroll_top: number): void;
-    setZoom(zoom_x: number, zoom_y: number): void;
-    setHorzScroll(s: number): number;
-    setVertScroll(s: number): number;
-    setViewport(vp: MinimapViewportSpec): void;
-    getTrackData(track_id: TrackId): any[];
-    getTrackDataIdKey(track_id: TrackId): string;
-    /**
-     * Sets the data for an Oncoprint track.
-     *
-     * @param track_id - the ID that identifies the track
-     * @param {Object[]} data - the list of data for the cells
-     * @param {string} data_id_key - name of the property of the
-     * data objects to use as the (column) key
-     */
-    setTrackData(track_id: TrackId, data: Datum[], data_id_key: string & keyof Datum): void;
-    setTrackImportantIds(track_id: TrackId, ids: ColumnId[] | undefined): void;
-    setTrackGroupSortPriority(priority: TrackGroupIndex[]): void;
-    resetSortableTracksSortDirection(): void;
-    setTrackSortDirection(track_id: TrackId, dir: TrackSortDirection): TrackSortDirection;
-    setTrackSortComparator(track_id: TrackId, sortCmpFn: TrackSortSpecification<Datum>): void;
-    getTrackSortDirection(track_id: TrackId): TrackSortDirection;
-    setTrackInfo(track_id: TrackId, msg: string): void;
-    setTrackTooltipFn(track_id: TrackId, tooltipFn: TrackTooltipFn<Datum>): void;
-    setShowTrackSublabels(show: boolean): void;
-    setTrackShowGaps(track_id: TrackId, showGaps: boolean): void;
-    sort(): void;
-    shareRuleSet(source_track_id: TrackId, target_track_id: TrackId): void;
-    setRuleSet(track_id: TrackId, rule_set_params: RuleSetParams): void;
-    setSortConfig(params: SortConfig): void;
-    setIdOrder(ids: ColumnId[]): void;
-    setTrackGroupHeader(index: TrackGroupIndex, header?: TrackGroupHeader): void;
-    disableInteraction(): void;
-    enableInteraction(): void;
-    suppressRendering(): void;
-    releaseRendering(onComplete?: () => void): void;
-    triggerPendingResizeAndOrganize(onComplete?: () => void): void;
-    hideIds(to_hide: ColumnId[], show_others?: boolean): void;
-    hideTrackLegends(track_ids: TrackId[]): void;
-    showTrackLegends(track_ids: TrackId[]): void;
-    setCellPaddingOn(cell_padding_on: boolean): void;
-    setTrackCustomOptions(track_id: TrackId, options: CustomTrackOption[] | undefined): void;
-    setTrackInfoTooltip(track_id: TrackId, $tooltip_elt: JQuery | undefined): void;
-    setTrackMovable(track_id: TrackId, movable: boolean): void;
-    setWidth(width: number): void;
-    setColumnLabels(labels: ColumnProp<ColumnLabel>): void;
-    setShowTrackLabels(s: boolean): void;
-    onCellMouseOver(callback: CellMouseOverCallback): void;
-    onCellClick(callback: CellClickCallback): void;
-    toSVG(with_background?: boolean): SVGSVGElement;
-    toCanvas(callback: (canvas: HTMLCanvasElement, truncated: boolean) => void, resolution?: number): HTMLImageElement;
-    toDataUrl(callback: (dataURL: string) => void): void;
-    highlightTrackLabelOnly(track_id: TrackId): void;
-    setHighlightedTracks(track_ids: TrackId[]): void;
-    setHighlightedIds(ids: ColumnId[]): void;
-    getIdOrder(all?: boolean): string[];
-    setIdClipboardContents(array: ColumnId[]): void;
-    getIdClipboardContents(): string[];
-    onClipboardChange(callback: ClipboardChangeCallback): void;
-    destroy(): void;
-    clearMouseOverEffects(): void;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import './polyfill';
+import OncoprintModel, { ColumnId, ColumnLabel, ColumnProp, CustomTrackOption, Datum, SortConfig, TrackGroupHeader, TrackGroupIndex, TrackId, TrackSortDirection, TrackSortSpecification, TrackTooltipFn, UserTrackSpec } from './oncoprintmodel';
+import OncoprintWebGLCellView from './oncoprintwebglcellview';
+import OncoprintLabelView from './oncoprintlabelview';
+import { RuleSetParams } from './oncoprintruleset';
+import OncoprintTrackOptionsView from './oncoprinttrackoptionsview';
+import OncoprintLegendView from './oncoprintlegendrenderer';
+import OncoprintTrackInfoView from './oncoprinttrackinfoview';
+import OncoprintMinimapView, { MinimapViewportSpec } from './oncoprintminimapview';
+import OncoprintHeaderView from './oncoprintheaderview';
+export declare type InitParams = {
+    init_cell_width?: number;
+    init_cell_padding?: number;
+    cell_padding_off_cell_width_threshold?: number;
+    init_horz_zoom?: number;
+    init_vert_zoom?: number;
+    init_track_group_padding?: number;
+    init_cell_padding_on?: boolean;
+    max_height?: number;
+};
+export declare type HorzZoomCallback = (zoom: number) => void;
+export declare type MinimapCloseCallback = () => void;
+export declare type CellMouseOverCallback = (uid: ColumnId | null, track_id?: TrackId) => void;
+export declare type CellClickCallback = (uid: ColumnId | null, track_id?: TrackId) => void;
+export declare type ClipboardChangeCallback = (ids: ColumnId[]) => void;
+export default class Oncoprint {
+    private ctr_selector;
+    private width;
+    private lastSortId;
+    private incrementLastSortId;
+    destroyed: boolean;
+    webgl_unavailable: boolean;
+    private $ctr;
+    private $oncoprint_ctr;
+    private $cell_div;
+    private $header_div;
+    private $legend_div;
+    private $track_options_div;
+    private $track_info_div;
+    private $dummy_scroll_div;
+    private $minimap_div;
+    private $cell_canvas;
+    private $cell_overlay_canvas;
+    model: OncoprintModel;
+    header_view: OncoprintHeaderView;
+    cell_view: OncoprintWebGLCellView;
+    minimap_view: OncoprintMinimapView;
+    track_options_view: OncoprintTrackOptionsView;
+    track_info_view: OncoprintTrackInfoView;
+    label_view: OncoprintLabelView;
+    legend_view: OncoprintLegendView;
+    private keep_horz_zoomed_to_fit;
+    private keep_horz_zoomed_to_fit_ids;
+    private pending_resize_and_organize;
+    private horz_zoom_callbacks;
+    private minimap_close_callbacks;
+    private cell_mouse_over_callbacks;
+    private cell_click_callbacks;
+    private id_clipboard;
+    private clipboard_change_callbacks;
+    private target_dummy_scroll_left;
+    private target_dummy_scroll_top;
+    private getCellViewHeight;
+    constructor(ctr_selector: string, width: number, params?: InitParams);
+    private _SetLegendTop;
+    private setLegendTopAfterTimeout;
+    private setHeight;
+    private resizeAndOrganize;
+    private resizeAndOrganizeAfterTimeout;
+    private maxOncoprintScrollLeft;
+    private maxOncoprintScrollTop;
+    private maxDummyScrollDivScroll;
+    setMinimapVisible(visible: boolean): void;
+    scrollTo(left: number): void;
+    onHorzZoom(callback: HorzZoomCallback): void;
+    onMinimapClose(callback: MinimapCloseCallback): void;
+    moveTrack(target_track: TrackId, new_previous_track: TrackId): void;
+    setTrackGroupOrder(index: TrackGroupIndex, track_order: TrackId[], dont_sort?: boolean): void;
+    setTrackGroupLegendOrder(group_order: TrackGroupIndex[]): void;
+    keepSorted(keep_sorted?: boolean): void;
+    addTracks(params_list: UserTrackSpec<Datum>[]): number[];
+    removeTrack(track_id: TrackId): void;
+    removeTracks(track_ids: TrackId[]): void;
+    getTracks(): number[];
+    removeAllTracks(): void;
+    removeExpansionTracksFor(track_id: TrackId): void;
+    disableTrackExpansion(track_id: TrackId): void;
+    enableTrackExpansion(track_id: TrackId): void;
+    removeAllExpansionTracksInGroup(index: TrackGroupIndex): void;
+    setHorzZoomToFit(ids: ColumnId[]): void;
+    updateHorzZoomToFitIds(ids: ColumnId[]): void;
+    private updateHorzZoomToFit;
+    private getHorzZoomToFit;
+    private executeHorzZoomCallbacks;
+    private executeMinimapCloseCallbacks;
+    private doCellMouseOver;
+    private doCellClick;
+    getHorzZoom(): number;
+    setHorzZoomCentered(z: number): void;
+    setHorzZoom(z: number, still_keep_horz_zoomed_to_fit?: boolean): number;
+    getVertZoom(): number;
+    setVertZoom(z: number): number;
+    private doSetScroll;
+    private setDummyScrollDivScroll;
+    setScroll(scroll_left: number, scroll_top: number): void;
+    setZoom(zoom_x: number, zoom_y: number): void;
+    setHorzScroll(s: number): number;
+    setVertScroll(s: number): number;
+    setViewport(vp: MinimapViewportSpec): void;
+    getTrackData(track_id: TrackId): any[];
+    getTrackDataIdKey(track_id: TrackId): string;
+    /**
+     * Sets the data for an Oncoprint track.
+     *
+     * @param track_id - the ID that identifies the track
+     * @param {Object[]} data - the list of data for the cells
+     * @param {string} data_id_key - name of the property of the
+     * data objects to use as the (column) key
+     */
+    setTrackData(track_id: TrackId, data: Datum[], data_id_key: string & keyof Datum): void;
+    setTrackImportantIds(track_id: TrackId, ids: ColumnId[] | undefined): void;
+    setTrackGroupSortPriority(priority: TrackGroupIndex[]): void;
+    resetSortableTracksSortDirection(): void;
+    setTrackSortDirection(track_id: TrackId, dir: TrackSortDirection): TrackSortDirection;
+    setTrackSortComparator(track_id: TrackId, sortCmpFn: TrackSortSpecification<Datum>): void;
+    getTrackSortDirection(track_id: TrackId): TrackSortDirection;
+    setTrackInfo(track_id: TrackId, msg: string): void;
+    setTrackTooltipFn(track_id: TrackId, tooltipFn: TrackTooltipFn<Datum>): void;
+    setShowTrackSublabels(show: boolean): void;
+    setTrackShowGaps(track_id: TrackId, showGaps: boolean): void;
+    sort(): void;
+    shareRuleSet(source_track_id: TrackId, target_track_id: TrackId): void;
+    setRuleSet(track_id: TrackId, rule_set_params: RuleSetParams): void;
+    setSortConfig(params: SortConfig): void;
+    setIdOrder(ids: ColumnId[]): void;
+    setTrackGroupHeader(index: TrackGroupIndex, header?: TrackGroupHeader): void;
+    disableInteraction(): void;
+    enableInteraction(): void;
+    suppressRendering(): void;
+    releaseRendering(onComplete?: () => void): void;
+    triggerPendingResizeAndOrganize(onComplete?: () => void): void;
+    hideIds(to_hide: ColumnId[], show_others?: boolean): void;
+    hideTrackLegends(track_ids: TrackId[]): void;
+    showTrackLegends(track_ids: TrackId[]): void;
+    setCellPaddingOn(cell_padding_on: boolean): void;
+    setTrackCustomOptions(track_id: TrackId, options: CustomTrackOption[] | undefined): void;
+    setTrackInfoTooltip(track_id: TrackId, $tooltip_elt: JQuery | undefined): void;
+    setTrackMovable(track_id: TrackId, movable: boolean): void;
+    setWidth(width: number): void;
+    setColumnLabels(labels: ColumnProp<ColumnLabel>): void;
+    setShowTrackLabels(s: boolean): void;
+    onCellMouseOver(callback: CellMouseOverCallback): void;
+    onCellClick(callback: CellClickCallback): void;
+    toSVG(with_background?: boolean): SVGSVGElement;
+    toCanvas(callback: (canvas: HTMLCanvasElement, truncated: boolean) => void, resolution?: number): HTMLImageElement;
+    toDataUrl(callback: (dataURL: string) => void): void;
+    highlightTrackLabelOnly(track_id: TrackId): void;
+    setHighlightedTracks(track_ids: TrackId[]): void;
+    setHighlightedIds(ids: ColumnId[]): void;
+    getIdOrder(all?: boolean): string[];
+    setIdClipboardContents(array: ColumnId[]): void;
+    getIdClipboardContents(): string[];
+    onClipboardChange(callback: ClipboardChangeCallback): void;
+    destroy(): void;
+    clearMouseOverEffects(): void;
+}

package/dist/js/oncoprintheaderview.d.ts

@@ -1,22 +1,23 @@
-/// <reference types="jquery" />
-import OncoprintModel from "./oncoprintmodel";
-export declare const CLOSE_MENUS_EVENT = "oncoprint-header-view.do-close-menus";
-export default class OncoprintHeaderView {
-    private rendering_suppressed;
-    private $occluded_ctr;
-    private $dropdowns_ctr;
-    private clickHandler;
-    private $dropdowns;
-    constructor($div: JQuery);
-    destroy(): void;
-    private closeAllDropdowns;
-    private closeDropdownsExcept;
-    private static $makeDropdownOption;
-    private static $makeDropdownSeparator;
-    render(model: OncoprintModel): void;
-    setScroll(model: OncoprintModel): void;
-    setVertScroll(model: OncoprintModel): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel): void;
-    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel from './oncoprintmodel';
+export declare const CLOSE_MENUS_EVENT = "oncoprint-header-view.do-close-menus";
+export default class OncoprintHeaderView {
+    private rendering_suppressed;
+    private $occluded_ctr;
+    private $dropdowns_ctr;
+    private clickHandler;
+    private $dropdowns;
+    constructor($div: JQuery);
+    destroy(): void;
+    private closeAllDropdowns;
+    private closeDropdownsExcept;
+    private static $makeDropdownOption;
+    private static $makeDropdownSeparator;
+    render(model: OncoprintModel): void;
+    setScroll(model: OncoprintModel): void;
+    setVertScroll(model: OncoprintModel): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel): void;
+    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
+}