oncoprintjs 5.0.3 → 6.0.1

package/dist/js/utils.d.ts

@@ -1,16 +1,16 @@
-import { ComputedShapeParams } from "./oncoprintshape";
-import { RGBAColor } from "./oncoprintruleset";
-export declare type Omit<T, K extends keyof T> = Pick<T, Exclude<keyof T, K>>;
-export declare function cloneShallow<T extends Object>(obj: T): T;
-export declare function extendArray(target: any[], source: any[]): void;
-export declare function doesCellIntersectPixel(cellHitzone: [number, number], pixelX: number): boolean;
-export declare function ifndef<T>(x: T | undefined, val: T): T;
-export declare function shallowExtend<T extends Object, S extends Object>(target: T, source: S): T & S;
-export declare function objectValues<T extends Object>(obj: T): (T[keyof T][]);
-export declare function arrayFindIndex<T>(arr: T[], predicate: (t: T) => boolean, start_index?: number): number;
-export declare function sgndiff(a: number, b: number): 0 | 1 | -1;
-export declare function clamp(x: number, lower: number, upper: number): number;
-export declare function z_comparator(shapeA: ComputedShapeParams, shapeB: ComputedShapeParams): 0 | 1 | -1;
-export declare function fastParseInt10(x: string, substringStart?: number, substringEnd?: number): number;
-export declare function fastParseInt16(x: string): number;
-export declare function rgbString(color: RGBAColor): string;
+import { ComputedShapeParams } from './oncoprintshape';
+import { RGBAColor } from './oncoprintruleset';
+export declare type Omit<T, K extends keyof T> = Pick<T, Exclude<keyof T, K>>;
+export declare function cloneShallow<T extends Object>(obj: T): T;
+export declare function extendArray(target: any[], source: any[]): void;
+export declare function doesCellIntersectPixel(cellHitzone: [number, number], pixelX: number): boolean;
+export declare function ifndef<T>(x: T | undefined, val: T): T;
+export declare function shallowExtend<T extends Object, S extends Object>(target: T, source: S): T & S;
+export declare function objectValues<T extends Object>(obj: T): T[keyof T][];
+export declare function arrayFindIndex<T>(arr: T[], predicate: (t: T) => boolean, start_index?: number): number;
+export declare function sgndiff(a: number, b: number): 0 | 1 | -1;
+export declare function clamp(x: number, lower: number, upper: number): number;
+export declare function z_comparator(shapeA: ComputedShapeParams, shapeB: ComputedShapeParams): 0 | 1 | -1;
+export declare function fastParseInt10(x: string, substringStart?: number, substringEnd?: number): number;
+export declare function fastParseInt16(x: string): number;
+export declare function rgbString(color: RGBAColor): string;

package/dist/js/workers/clustering-worker.d.ts

@@ -1,20 +1,19 @@
-declare type Item = {
-    orderedValueList: number[];
-};
-export declare type EntityItem = Item & {
-    entityId: string;
-};
-export declare type CaseItem = Item & {
-    caseId: string;
-};
-export declare type CasesAndEntities = {
-    [caseId: string]: {
-        [entityId: string]: number;
-    };
-};
-export declare type ClusteringMessage = {
-    dimension: "CASES" | "ENTITIES";
-    casesAndEntities: CasesAndEntities;
-};
-declare const _default: any;
-export default _default;
+declare type Item = {
+    orderedValueList: number[];
+};
+export declare type EntityItem = Item & {
+    entityId: string;
+};
+export declare type CaseItem = Item & {
+    caseId: string;
+};
+export declare type CasesAndEntities = {
+    [caseId: string]: {
+        [entityId: string]: number;
+    };
+};
+export declare type ClusteringMessage = {
+    dimension: 'CASES' | 'ENTITIES';
+    casesAndEntities: CasesAndEntities;
+};
+export {};

package/dist/test/gradientCategoricalRuleset.spec.d.ts

@@ -1 +1 @@
-export {};
+export {};

package/dist/test/monolith.spec.d.ts

@@ -1 +1 @@
-export {};
+export {};

package/jest.config.ts

@@ -0,0 +1,2 @@
+import config from '../config/jest.config';
+export default config;

package/package.json

@@ -1,14 +1,23 @@
 {
   "name": "oncoprintjs",
-  "version": "v5.0.3", 
+  "version": "6.0.1",
   "description": "A data visualization for cancer genomic data.",
   "types": "./dist/js/oncoprint.d.ts",
-  "main": "./dist/oncoprint.bundle.js",
+  "main": "dist/index.js",
+  "module": "dist/index.es.js",
+  "jsnext:main": "dist/index.es.js",
+  "typings": "dist/index.d.ts",
+  "styles": "dist/styles.css",
   "scripts": {
-    "build": "rm -rf ./dist/* && webpack",
-    "build-dev": "yarn build --env.DEV=true",
-    "test": "jest",
-    "test:watch": "npm run test -- --watch"
+    "build": "cross-env NODE_ENV=production NODE_OPTIONS=--max-old-space-size=2048 yarn run rollup",
+    "start": "yarn run watch",
+    "watch": "yarn run rollup:watch",
+    "watchSSL": "yarn run watch",
+    "rollup": "rollup -c rollup.config.ts",
+    "rollup:watch": "rollup -c rollup.config.ts -w",
+    "prepare": "yarn run build",
+    "test": "cross-env jest $GREP --env=jsdom --runInBand --ci --reporters=default --reporters=jest-junit --passWithNoTests",
+    "test:watch": "yarn run test --watch"
   },
   "repository": {
     "type": "git",
@@ -43,28 +52,13 @@
     "url": "https://github.com/cBioPortal/oncoprintjs/issues"
   },
   "homepage": "https://github.com/cBioPortal/oncoprintjs",
-  "devDependencies": {
-    "@types/chai": "^4.2.3",
-    "@types/jquery": "^3.3.31",
-    "@types/lodash": "^4.14.139",
-    "@types/mocha": "^5.2.7",
-    "chai": "^4.1.2",
-    "jest": "^24.9.0",
-    "mocha": "^5.0.5",
-    "ts-jest": "^24.1.0",
-    "ts-loader": "5.4.5",
-    "typescript": "^3.6.3",
-    "url-loader": "^1.1.1",
-    "webpack": "^4.0.0",
-    "webpack-cli": "^3.3.9",
-    "webpack-shell-plugin": "^0.5.0",
-    "worker-loader": "^1.1.0"
-  },
   "dependencies": {
     "gl-matrix": "2.3.2",
-    "jquery": "^3.0.0",
+    "jquery": "^3.2.1",
     "jstat": "^1.7.1",
     "lodash": "^4.17.15",
-    "tayden-clusterfck": "^0.7.0"
-  }
+    "tayden-clusterfck": "^0.7.0",
+    "typescript": "4.0.3"
+  },
+  "gitHead": "f4d4f999c480f95b907d4c37947f421f16edb4f5"
 }

package/rollup.config.ts

@@ -0,0 +1,14 @@
+import getRollupOptions from '../config/rollup.config';
+import pkg from './package.json';
+
+export default getRollupOptions(
+    'src/index.tsx',
+    pkg.main,
+    pkg.module,
+    pkg.styles,
+    // we need to bundle these packages, because these are imported in web workers
+    // otherwise web workers cannot find these packages in runtime
+    {
+        exclude: ['tayden-clusterfck', 'jstat'],
+    }
+);