oncoprintjs 5.0.3 → 6.0.1

package/dist/js/oncoprinttrackoptionsview.d.ts

@@ -1,57 +1,58 @@
-/// <reference types="jquery" />
-import OncoprintModel, { TrackId, TrackSortDirection } from "./oncoprintmodel";
-export declare const CLOSE_MENUS_EVENT = "oncoprint-track-options-view.do-close-menus";
-declare type TrackCallback = (trackId: TrackId) => void;
-export default class OncoprintTrackOptionsView {
-    private $div;
-    private moveUpCallback;
-    private moveDownCallback;
-    private removeCallback;
-    private sortChangeCallback;
-    private unexpandCallback;
-    private showGapsCallback;
-    private $ctr;
-    private $buttons_ctr;
-    private $dropdown_ctr;
-    private img_size;
-    private rendering_suppressed;
-    private track_options_$elts;
-    private menu_shown;
-    private clickHandler;
-    private interaction_disabled;
-    constructor($div: JQuery, moveUpCallback: TrackCallback, moveDownCallback: TrackCallback, removeCallback: TrackCallback, sortChangeCallback: (trackId: TrackId, sortDirection: TrackSortDirection) => void, unexpandCallback: TrackCallback, showGapsCallback: (trackId: TrackId, showGaps: boolean) => void);
-    private renderAllOptions;
-    private scroll;
-    private resize;
-    private hideTrackMenu;
-    private showTrackMenu;
-    private hideAllMenus;
-    private hideMenusExcept;
-    private static $makeDropdownOption;
-    private static $makeDropdownSeparator;
-    private static renderSortArrow;
-    private renderTrackOptions;
-    enableInteraction(): void;
-    disableInteraction(): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setScroll(model: OncoprintModel): void;
-    setHorzScroll(model: OncoprintModel): void;
-    setVertScroll(model: OncoprintModel): void;
-    setZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setVertZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setTrackGroupHeader(model: OncoprintModel, getCellViewHeight: () => number): void;
-    sort(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setViewport(model: OncoprintModel, getCellViewHeight: () => number): void;
-    getWidth(): number;
-    setTrackShowGaps(model: OncoprintModel, getCellViewHeight: () => number): void;
-    addTracks(model: OncoprintModel, getCellViewHeight: () => number): void;
-    moveTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
-    setTrackGroupOrder(model: OncoprintModel): void;
-    setSortConfig(model: OncoprintModel): void;
-    removeTrack(model: OncoprintModel, track_id: TrackId, getCellViewHeight: () => number): void;
-    destroy(): void;
-    setTrackCustomOptions(model: OncoprintModel): void;
-    setTrackMovable(model: OncoprintModel): void;
-}
-export {};
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel, { TrackId, TrackSortDirection } from './oncoprintmodel';
+export declare const CLOSE_MENUS_EVENT = "oncoprint-track-options-view.do-close-menus";
+declare type TrackCallback = (trackId: TrackId) => void;
+export default class OncoprintTrackOptionsView {
+    private $div;
+    private moveUpCallback;
+    private moveDownCallback;
+    private removeCallback;
+    private sortChangeCallback;
+    private unexpandCallback;
+    private showGapsCallback;
+    private $ctr;
+    private $buttons_ctr;
+    private $dropdown_ctr;
+    private img_size;
+    private rendering_suppressed;
+    private track_options_$elts;
+    private menu_shown;
+    private clickHandler;
+    private interaction_disabled;
+    constructor($div: JQuery, moveUpCallback: TrackCallback, moveDownCallback: TrackCallback, removeCallback: TrackCallback, sortChangeCallback: (trackId: TrackId, sortDirection: TrackSortDirection) => void, unexpandCallback: TrackCallback, showGapsCallback: (trackId: TrackId, showGaps: boolean) => void);
+    private renderAllOptions;
+    private scroll;
+    private resize;
+    private hideTrackMenu;
+    private showTrackMenu;
+    private hideAllMenus;
+    private hideMenusExcept;
+    private static $makeDropdownOption;
+    private static $makeDropdownSeparator;
+    private static renderSortArrow;
+    private renderTrackOptions;
+    enableInteraction(): void;
+    disableInteraction(): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setScroll(model: OncoprintModel): void;
+    setHorzScroll(model: OncoprintModel): void;
+    setVertScroll(model: OncoprintModel): void;
+    setZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setVertZoom(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setTrackGroupHeader(model: OncoprintModel, getCellViewHeight: () => number): void;
+    sort(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setViewport(model: OncoprintModel, getCellViewHeight: () => number): void;
+    getWidth(): number;
+    setTrackShowGaps(model: OncoprintModel, getCellViewHeight: () => number): void;
+    addTracks(model: OncoprintModel, getCellViewHeight: () => number): void;
+    moveTrack(model: OncoprintModel, getCellViewHeight: () => number): void;
+    setTrackGroupOrder(model: OncoprintModel): void;
+    setSortConfig(model: OncoprintModel): void;
+    removeTrack(model: OncoprintModel, track_id: TrackId, getCellViewHeight: () => number): void;
+    destroy(): void;
+    setTrackCustomOptions(model: OncoprintModel): void;
+    setTrackMovable(model: OncoprintModel): void;
+}
+export {};

package/dist/js/oncoprintwebglcellview.d.ts

@@ -1,167 +1,168 @@
-/// <reference types="jquery" />
-import OncoprintModel, { ColumnId, TrackId, TrackProp } from "./oncoprintmodel";
-import OncoprintToolTip from "./oncoprinttooltip";
-import { CellClickCallback, CellMouseOverCallback } from "./oncoprint";
-declare type ColorBank = number[];
-export declare type OncoprintWebGLContext = WebGLRenderingContext & {
-    viewportWidth: number;
-    viewportHeight: number;
-};
-export declare type OncoprintShaderProgram = WebGLProgram & {
-    vertexPositionAttribute: any;
-    vertexColorAttribute: any;
-    vertexOncoprintColumnAttribute: any;
-    gapSizeUniform: WebGLUniformLocation;
-    columnsRightAfterGapsUniform: WebGLUniformLocation;
-    samplerUniform: WebGLUniformLocation;
-    pMatrixUniform: WebGLUniformLocation;
-    mvMatrixUniform: WebGLUniformLocation;
-    columnWidthUniform: WebGLUniformLocation;
-    scrollXUniform: WebGLUniformLocation;
-    scrollYUniform: WebGLUniformLocation;
-    zoomXUniform: WebGLUniformLocation;
-    zoomYUniform: WebGLUniformLocation;
-    offsetYUniform: WebGLUniformLocation;
-    supersamplingRatioUniform: WebGLUniformLocation;
-    positionBitPackBaseUniform: WebGLUniformLocation;
-    texSizeUniform: WebGLUniformLocation;
-};
-export declare type OncoprintTrackBuffer = WebGLBuffer & {
-    itemSize: number;
-    numItems: number;
-};
-export declare type OncoprintVertexTrackBuffer = OncoprintTrackBuffer & {
-    specificShapesNumItems: number;
-    universalShapesNumItems: number;
-};
-export default class OncoprintWebGLCellView {
-    private $container;
-    private $canvas;
-    private $overlay_canvas;
-    private $column_label_canvas;
-    private $dummy_scroll_div_contents;
-    private tooltip;
-    private highlight_area_callback;
-    readonly position_bit_pack_base = 128;
-    private readonly supersampling_ratio;
-    private readonly antialias_on_cell_width_thresh;
-    private antialias;
-    private dummy_scroll_div_client_size;
-    visible_area_width: number;
-    private mouseMoveHandler;
-    private ctx;
-    private ext;
-    private overlay_ctx;
-    private column_label_ctx;
-    private mvMatrix;
-    private pMatrix;
-    private shader_program;
-    private scroll_x;
-    private scroll_y;
-    private maximum_column_label_width;
-    private maximum_column_label_height;
-    private rendering_suppressed;
-    private specific_shapes;
-    private universal_shapes;
-    vertex_data: TrackProp<{
-        pos_array: Float32Array;
-        col_array: Float32Array;
-        col_bank: ColorBank;
-        universal_shapes_start_index: number;
-    }>;
-    vertex_column_array: TrackProp<Float32Array>;
-    private vertex_position_buffer;
-    private vertex_color_buffer;
-    private vertex_column_buffer;
-    private simple_count_buffer;
-    private is_buffer_empty;
-    private color_texture;
-    private id_to_first_vertex_index;
-    constructor($container: JQuery, $canvas: JQuery<HTMLCanvasElement>, $overlay_canvas: JQuery<HTMLCanvasElement>, $column_label_canvas: JQuery<HTMLCanvasElement>, $dummy_scroll_div_contents: JQuery, model: OncoprintModel, tooltip: OncoprintToolTip, highlight_area_callback: undefined | ((left: number, right: number) => void), cell_over_callback: CellMouseOverCallback, cell_click_callback: CellClickCallback);
-    private getNewCanvas;
-    private getWebGLCanvasContext;
-    private createShaderProgram;
-    private createShader;
-    private overlayStrokeRect;
-    private overlayFillRect;
-    clearOverlay(): void;
-    private getOverlayContextAndClear;
-    private getColumnLabelsContext;
-    private getColumnLabelY;
-    private overlayColumnLabelHighlight;
-    private getWebGLContextAndSetUpMatrices;
-    private getColumnIndexesAfterAGap;
-    private setUpShaders;
-    private resizeAndClear;
-    private renderAllTracks;
-    private static getColumnLabelsFontSize;
-    private prepareContextForColumnLabelText;
-    private renderColumnLabels;
-    private getColumnLabelAngleRadians;
-    private getColumnLabelCircleSpec;
-    private ensureSimpleCountBuffer;
-    private clearTrackPositionAndColorBuffers;
-    private clearTrackColumnBuffers;
-    private deleteBuffers;
-    private deleteSimpleCountBuffer;
-    private getTrackBuffers;
-    private computeVertexColumns;
-    private computeVertexPositionsAndVertexColors;
-    private getShapes;
-    private refreshCanvas;
-    private highlightCell;
-    private highlightTrack;
-    private highlightColumn;
-    getViewportOncoprintSpace(model: OncoprintModel): {
-        top: number;
-        bottom: number;
-        left: number;
-        right: number;
-        center_col_index: number;
-    };
-    isUsable(): boolean;
-    removeTrack(model: OncoprintModel, track_id: TrackId): void;
-    moveTrack(model: OncoprintModel): void;
-    setTrackGroupOrder(model: OncoprintModel): void;
-    setTrackShowGaps(model: OncoprintModel): void;
-    setColumnLabels(model: OncoprintModel): void;
-    addTracks(model: OncoprintModel, track_ids: TrackId[]): void;
-    setIdOrder(model: OncoprintModel, ids: ColumnId[]): void;
-    setTrackGroupSortPriority(model: OncoprintModel): void;
-    sort(model: OncoprintModel): void;
-    suppressRendering(): void;
-    releaseRendering(model: OncoprintModel): void;
-    hideIds(model: OncoprintModel): void;
-    setTrackImportantIds(model: OncoprintModel, track_id: TrackId): void;
-    setTrackData(model: OncoprintModel, track_id: TrackId): void;
-    setRuleSet(model: OncoprintModel, target_track_id: TrackId): void;
-    shareRuleSet(model: OncoprintModel, target_track_id: TrackId): void;
-    setSortConfig(model: OncoprintModel): void;
-    setHorzScroll(model: OncoprintModel): void;
-    setVertScroll(model: OncoprintModel): void;
-    setScroll(model: OncoprintModel): void;
-    private updateAntialiasSetting;
-    setZoom(model: OncoprintModel): void;
-    setHorzZoom(model: OncoprintModel): void;
-    setVertZoom(model: OncoprintModel): void;
-    setTrackGroupHeader(model: OncoprintModel): void;
-    setViewport(model: OncoprintModel): void;
-    getTotalWidth(model: OncoprintModel, base?: boolean): number;
-    getVisibleAreaWidth(): number;
-    setWidth(w: number, model: OncoprintModel): void;
-    private getColumnLabelsHeight;
-    getTotalHeight(model: OncoprintModel): number;
-    getVisibleAreaHeight(model: OncoprintModel): number;
-    setCellPaddingOn(model: OncoprintModel): void;
-    setHighlightedIds(model: OncoprintModel): void;
-    setHighlightedTracks(model: OncoprintModel): void;
-    highlightHighlightedIds(model: OncoprintModel, opt_exclude_ids?: ColumnId[]): void;
-    highlightHighlightedTracks(model: OncoprintModel): void;
-    getDummyScrollDivClientSize(): {
-        width: number;
-        height: number;
-    };
-    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
-    destroy(): void;
-}
-export {};
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+import OncoprintModel, { ColumnId, TrackId, TrackProp } from './oncoprintmodel';
+import OncoprintToolTip from './oncoprinttooltip';
+import { CellClickCallback, CellMouseOverCallback } from './oncoprint';
+declare type ColorBank = number[];
+export declare type OncoprintWebGLContext = WebGLRenderingContext & {
+    viewportWidth: number;
+    viewportHeight: number;
+};
+export declare type OncoprintShaderProgram = WebGLProgram & {
+    vertexPositionAttribute: any;
+    vertexColorAttribute: any;
+    vertexOncoprintColumnAttribute: any;
+    gapSizeUniform: WebGLUniformLocation;
+    columnsRightAfterGapsUniform: WebGLUniformLocation;
+    samplerUniform: WebGLUniformLocation;
+    pMatrixUniform: WebGLUniformLocation;
+    mvMatrixUniform: WebGLUniformLocation;
+    columnWidthUniform: WebGLUniformLocation;
+    scrollXUniform: WebGLUniformLocation;
+    scrollYUniform: WebGLUniformLocation;
+    zoomXUniform: WebGLUniformLocation;
+    zoomYUniform: WebGLUniformLocation;
+    offsetYUniform: WebGLUniformLocation;
+    supersamplingRatioUniform: WebGLUniformLocation;
+    positionBitPackBaseUniform: WebGLUniformLocation;
+    texSizeUniform: WebGLUniformLocation;
+};
+export declare type OncoprintTrackBuffer = WebGLBuffer & {
+    itemSize: number;
+    numItems: number;
+};
+export declare type OncoprintVertexTrackBuffer = OncoprintTrackBuffer & {
+    specificShapesNumItems: number;
+    universalShapesNumItems: number;
+};
+export default class OncoprintWebGLCellView {
+    private $container;
+    private $canvas;
+    private $overlay_canvas;
+    private $column_label_canvas;
+    private $dummy_scroll_div_contents;
+    private tooltip;
+    private highlight_area_callback;
+    readonly position_bit_pack_base = 128;
+    private readonly supersampling_ratio;
+    private readonly antialias_on_cell_width_thresh;
+    private antialias;
+    private dummy_scroll_div_client_size;
+    visible_area_width: number;
+    private mouseMoveHandler;
+    private ctx;
+    private ext;
+    private overlay_ctx;
+    private column_label_ctx;
+    private mvMatrix;
+    private pMatrix;
+    private shader_program;
+    private scroll_x;
+    private scroll_y;
+    private maximum_column_label_width;
+    private maximum_column_label_height;
+    private rendering_suppressed;
+    private specific_shapes;
+    private universal_shapes;
+    vertex_data: TrackProp<{
+        pos_array: Float32Array;
+        col_array: Float32Array;
+        col_bank: ColorBank;
+        universal_shapes_start_index: number;
+    }>;
+    vertex_column_array: TrackProp<Float32Array>;
+    private vertex_position_buffer;
+    private vertex_color_buffer;
+    private vertex_column_buffer;
+    private simple_count_buffer;
+    private is_buffer_empty;
+    private color_texture;
+    private id_to_first_vertex_index;
+    constructor($container: JQuery, $canvas: JQuery<HTMLCanvasElement>, $overlay_canvas: JQuery<HTMLCanvasElement>, $column_label_canvas: JQuery<HTMLCanvasElement>, $dummy_scroll_div_contents: JQuery, model: OncoprintModel, tooltip: OncoprintToolTip, highlight_area_callback: undefined | ((left: number, right: number) => void), cell_over_callback: CellMouseOverCallback, cell_click_callback: CellClickCallback);
+    private getNewCanvas;
+    private getWebGLCanvasContext;
+    private createShaderProgram;
+    private createShader;
+    private overlayStrokeRect;
+    private overlayFillRect;
+    clearOverlay(): void;
+    private getOverlayContextAndClear;
+    private getColumnLabelsContext;
+    private getColumnLabelY;
+    private overlayColumnLabelHighlight;
+    private getWebGLContextAndSetUpMatrices;
+    private getColumnIndexesAfterAGap;
+    private setUpShaders;
+    private resizeAndClear;
+    private renderAllTracks;
+    private static getColumnLabelsFontSize;
+    private prepareContextForColumnLabelText;
+    private renderColumnLabels;
+    private getColumnLabelAngleRadians;
+    private getColumnLabelCircleSpec;
+    private ensureSimpleCountBuffer;
+    private clearTrackPositionAndColorBuffers;
+    private clearTrackColumnBuffers;
+    private deleteBuffers;
+    private deleteSimpleCountBuffer;
+    private getTrackBuffers;
+    private computeVertexColumns;
+    private computeVertexPositionsAndVertexColors;
+    private getShapes;
+    private refreshCanvas;
+    private highlightCell;
+    private highlightTrack;
+    private highlightColumn;
+    getViewportOncoprintSpace(model: OncoprintModel): {
+        top: number;
+        bottom: number;
+        left: number;
+        right: number;
+        center_col_index: number;
+    };
+    isUsable(): boolean;
+    removeTrack(model: OncoprintModel, track_id: TrackId): void;
+    moveTrack(model: OncoprintModel): void;
+    setTrackGroupOrder(model: OncoprintModel): void;
+    setTrackShowGaps(model: OncoprintModel): void;
+    setColumnLabels(model: OncoprintModel): void;
+    addTracks(model: OncoprintModel, track_ids: TrackId[]): void;
+    setIdOrder(model: OncoprintModel, ids: ColumnId[]): void;
+    setTrackGroupSortPriority(model: OncoprintModel): void;
+    sort(model: OncoprintModel): void;
+    suppressRendering(): void;
+    releaseRendering(model: OncoprintModel): void;
+    hideIds(model: OncoprintModel): void;
+    setTrackImportantIds(model: OncoprintModel, track_id: TrackId): void;
+    setTrackData(model: OncoprintModel, track_id: TrackId): void;
+    setRuleSet(model: OncoprintModel, target_track_id: TrackId): void;
+    shareRuleSet(model: OncoprintModel, target_track_id: TrackId): void;
+    setSortConfig(model: OncoprintModel): void;
+    setHorzScroll(model: OncoprintModel): void;
+    setVertScroll(model: OncoprintModel): void;
+    setScroll(model: OncoprintModel): void;
+    private updateAntialiasSetting;
+    setZoom(model: OncoprintModel): void;
+    setHorzZoom(model: OncoprintModel): void;
+    setVertZoom(model: OncoprintModel): void;
+    setTrackGroupHeader(model: OncoprintModel): void;
+    setViewport(model: OncoprintModel): void;
+    getTotalWidth(model: OncoprintModel, base?: boolean): number;
+    getVisibleAreaWidth(): number;
+    setWidth(w: number, model: OncoprintModel): void;
+    private getColumnLabelsHeight;
+    getTotalHeight(model: OncoprintModel): number;
+    getVisibleAreaHeight(model: OncoprintModel): number;
+    setCellPaddingOn(model: OncoprintModel): void;
+    setHighlightedIds(model: OncoprintModel): void;
+    setHighlightedTracks(model: OncoprintModel): void;
+    highlightHighlightedIds(model: OncoprintModel, opt_exclude_ids?: ColumnId[]): void;
+    highlightHighlightedTracks(model: OncoprintModel): void;
+    getDummyScrollDivClientSize(): {
+        width: number;
+        height: number;
+    };
+    toSVGGroup(model: OncoprintModel, offset_x: number, offset_y: number): SVGGElement;
+    destroy(): void;
+}
+export {};

package/dist/js/oncoprintzoomslider.d.ts

@@ -1,27 +1,28 @@
-/// <reference types="jquery" />
-export declare type OncoprintZoomSliderParams = {
-    btn_size: number;
-    horizontal?: boolean;
-    width?: number;
-    vertical?: boolean;
-    height?: number;
-    init_val: number;
-    left: number;
-    top: number;
-    onChange: (val: number) => void;
-};
-export default class OncoprintZoomSlider {
-    private $div;
-    private onChange;
-    private value;
-    private slider_bar_size;
-    private orientation;
-    private $slider;
-    private $plus_btn;
-    private $minus_btn;
-    constructor($container: JQuery, params?: Partial<OncoprintZoomSliderParams>);
-    private initialize;
-    private updateSliderPos;
-    private getSliderBounds;
-    setSliderValue(proportion: number): void;
-}
+/// <reference types="jquery" />
+/// <reference types="jstree" />
+export declare type OncoprintZoomSliderParams = {
+    btn_size: number;
+    horizontal?: boolean;
+    width?: number;
+    vertical?: boolean;
+    height?: number;
+    init_val: number;
+    left: number;
+    top: number;
+    onChange: (val: number) => void;
+};
+export default class OncoprintZoomSlider {
+    private $div;
+    private onChange;
+    private value;
+    private slider_bar_size;
+    private orientation;
+    private $slider;
+    private $plus_btn;
+    private $minus_btn;
+    constructor($container: JQuery, params?: Partial<OncoprintZoomSliderParams>);
+    private initialize;
+    private updateSliderPos;
+    private getSliderBounds;
+    setSliderValue(proportion: number): void;
+}

package/dist/js/polyfill.d.ts

@@ -1,4 +1,4 @@
-export declare type OMath = Math & {
-    log2: (x: number) => number;
-};
-export declare const OMath: OMath;
+export declare type OMath = Math & {
+    log2: (x: number) => number;
+};
+export declare const OMath: OMath;

package/dist/js/precomputedcomparator.d.ts

@@ -1,13 +1,13 @@
-import { ColumnId, TrackSortDirection, TrackSortSpecification } from "./oncoprintmodel";
-export default class PrecomputedComparator<T> {
-    private preferred_change_points;
-    private mandatory_change_points;
-    private id_to_index;
-    constructor(list: T[], comparator: TrackSortSpecification<T>, sort_direction: TrackSortDirection, element_identifier_key: string & keyof T);
-    private initializeComparator;
-    private initializeVector;
-    getSortValue(id: ColumnId): {
-        mandatory: number;
-        preferred: number;
-    };
-}
+import { ColumnId, TrackSortDirection, TrackSortSpecification } from './oncoprintmodel';
+export default class PrecomputedComparator<T> {
+    private preferred_change_points;
+    private mandatory_change_points;
+    private id_to_index;
+    constructor(list: T[], comparator: TrackSortSpecification<T>, sort_direction: TrackSortDirection, element_identifier_key: string & keyof T);
+    private initializeComparator;
+    private initializeVector;
+    getSortValue(id: ColumnId): {
+        mandatory: number;
+        preferred: number;
+    };
+}

package/dist/js/shaders.d.ts

@@ -1,2 +1,2 @@
-export declare function getVertexShaderSource(columnsRightAfterGapsSize: number): string;
-export declare function getFragmentShaderSource(): string;
+export declare function getVertexShaderSource(columnsRightAfterGapsSize: number): string;
+export declare function getFragmentShaderSource(): string;

package/dist/js/svgfactory.d.ts

@@ -1,23 +1,24 @@
-import { ComputedShapeParams } from "./oncoprintshape";
-declare const _default: {
-    text: (content: string, x?: number, y?: number, size?: number, family?: string, weight?: string, alignment_baseline?: string, fill?: string, text_decoration?: string) => SVGTextElement;
-    group: (x: number, y: number) => SVGGElement;
-    svg: (width: number, height: number) => SVGSVGElement;
-    wrapText: (in_dom_text_svg_elt: SVGTextElement, width: number) => void;
-    fromShape: (oncoprint_shape_computed_params: ComputedShapeParams, offset_x: number, offset_y: number) => SVGElement;
-    polygon: (points: [number, number][], fill: [number, number, number, number]) => SVGPolygonElement;
-    rect: (x: number, y: number, width: number, height: number, fillSpecification: {
-        type: "rgba";
-        value: [number, number, number, number];
-    } | {
-        type: "gradientId";
-        value: string;
-    }) => SVGRectElement;
-    bgrect: (width: number, height: number, fill: [number, number, number, number]) => SVGRectElement;
-    path: (points: [number, number][], stroke: [number, number, number, number], fill: [number, number, number, number], linearGradient: SVGGradientElement) => SVGPathElement;
-    stop: (offset: number, color: [number, number, number, number]) => SVGStopElement;
-    linearGradient: () => SVGLinearGradientElement;
-    defs: () => SVGDefsElement;
-    gradient: (colorFn: (val: number) => [number, number, number, number]) => SVGLinearGradientElement;
-};
-export default _default;
+import { ComputedShapeParams } from './oncoprintshape';
+import { RGBAColor } from './oncoprintruleset';
+declare const _default: {
+    text: (content: string, x?: number, y?: number, size?: number, family?: string, weight?: string, alignment_baseline?: string, fill?: string, text_decoration?: string) => SVGTextElement;
+    group: (x: number | undefined, y: number | undefined) => SVGGElement;
+    svg: (width: number | undefined, height: number | undefined) => SVGSVGElement;
+    wrapText: (in_dom_text_svg_elt: SVGTextElement, width: number) => void;
+    fromShape: (oncoprint_shape_computed_params: ComputedShapeParams, offset_x: number, offset_y: number) => SVGElement;
+    polygon: (points: [number, number][], fill: RGBAColor) => SVGPolygonElement;
+    rect: (x: number, y: number, width: number, height: number, fillSpecification: {
+        type: 'rgba';
+        value: RGBAColor;
+    } | {
+        type: 'gradientId';
+        value: string;
+    }) => SVGRectElement;
+    bgrect: (width: number, height: number, fill: RGBAColor) => SVGRectElement;
+    path: (points: [number, number][], stroke: RGBAColor, fill: RGBAColor, linearGradient: SVGGradientElement) => SVGPathElement;
+    stop: (offset: number, color: RGBAColor) => SVGStopElement;
+    linearGradient: () => SVGLinearGradientElement;
+    defs: () => SVGDefsElement;
+    gradient: (colorFn: (val: number) => RGBAColor) => SVGLinearGradientElement;
+};
+export default _default;