oncoprintjs 5.0.3 → 6.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. package/README.md +34 -0
  2. package/dist/index.d.ts +4 -0
  3. package/dist/index.es.js +14746 -0
  4. package/dist/index.es.js.map +1 -0
  5. package/dist/index.js +14760 -0
  6. package/dist/index.js.map +1 -0
  7. package/dist/js/CachedProperty.d.ts +10 -10
  8. package/dist/js/binarysearch.d.ts +1 -1
  9. package/dist/js/bucketsort.d.ts +16 -16
  10. package/dist/js/clustering.d.ts +14 -14
  11. package/dist/js/extractrgba.d.ts +4 -4
  12. package/dist/js/haselementsininterval.d.ts +1 -1
  13. package/dist/js/heatmapcolors.d.ts +5 -4
  14. package/dist/js/makesvgelement.d.ts +1 -1
  15. package/dist/js/modelutils.d.ts +7 -7
  16. package/dist/js/oncoprint.d.ts +168 -170
  17. package/dist/js/oncoprintheaderview.d.ts +23 -22
  18. package/dist/js/oncoprintlabelview.d.ts +79 -78
  19. package/dist/js/oncoprintlegendrenderer.d.ts +32 -31
  20. package/dist/js/oncoprintminimapview.d.ts +69 -68
  21. package/dist/js/oncoprintmodel.d.ts +403 -398
  22. package/dist/js/oncoprintruleset.d.ts +176 -177
  23. package/dist/js/oncoprintshape.d.ts +67 -67
  24. package/dist/js/oncoprintshapetosvg.d.ts +2 -2
  25. package/dist/js/oncoprintshapetovertexes.d.ts +5 -5
  26. package/dist/js/oncoprinttooltip.d.ts +23 -22
  27. package/dist/js/oncoprinttrackinfoview.d.ts +40 -39
  28. package/dist/js/oncoprinttrackoptionsview.d.ts +58 -57
  29. package/dist/js/oncoprintwebglcellview.d.ts +168 -167
  30. package/dist/js/oncoprintzoomslider.d.ts +28 -27
  31. package/dist/js/polyfill.d.ts +4 -4
  32. package/dist/js/precomputedcomparator.d.ts +13 -13
  33. package/dist/js/shaders.d.ts +2 -2
  34. package/dist/js/svgfactory.d.ts +24 -23
  35. package/dist/js/utils.d.ts +16 -16
  36. package/dist/js/workers/clustering-worker.d.ts +19 -20
  37. package/dist/test/gradientCategoricalRuleset.spec.d.ts +1 -1
  38. package/dist/test/monolith.spec.d.ts +1 -1
  39. package/jest.config.ts +2 -0
  40. package/package.json +20 -26
  41. package/rollup.config.ts +14 -0
  42. package/rules/geneticrules.ts +344 -305
  43. package/server.js +11 -0
  44. package/src/img/menudots.svg +9 -9
  45. package/src/img/zoomtofit.svg +12 -12
  46. package/src/index.tsx +13 -0
  47. package/src/js/CachedProperty.ts +6 -7
  48. package/src/js/binarysearch.ts +8 -3
  49. package/src/js/bucketsort.ts +89 -47
  50. package/src/js/clustering.ts +22 -10
  51. package/src/js/extractrgba.ts +16 -12
  52. package/src/js/haselementsininterval.ts +8 -4
  53. package/src/js/heatmapcolors.ts +515 -515
  54. package/src/js/main.js +1 -1
  55. package/src/js/makesvgelement.ts +2 -2
  56. package/src/js/modelutils.ts +11 -8
  57. package/src/js/oncoprint.ts +706 -385
  58. package/src/js/oncoprintheaderview.ts +165 -125
  59. package/src/js/oncoprintlabelview.ts +388 -170
  60. package/src/js/oncoprintlegendrenderer.ts +203 -72
  61. package/src/js/oncoprintminimapview.ts +965 -423
  62. package/src/js/oncoprintmodel.ts +905 -532
  63. package/src/js/oncoprintruleset.ts +694 -379
  64. package/src/js/oncoprintshape.ts +240 -97
  65. package/src/js/oncoprintshapetosvg.ts +77 -26
  66. package/src/js/oncoprintshapetovertexes.ts +153 -48
  67. package/src/js/oncoprinttooltip.ts +58 -27
  68. package/src/js/oncoprinttrackinfoview.ts +115 -59
  69. package/src/js/oncoprinttrackoptionsview.ts +354 -187
  70. package/src/js/oncoprintwebglcellview.ts +951 -415
  71. package/src/js/oncoprintzoomslider.ts +172 -107
  72. package/src/js/polyfill.ts +7 -3
  73. package/src/js/precomputedcomparator.ts +133 -50
  74. package/src/js/shaders.ts +2 -4
  75. package/src/js/svgfactory.ts +128 -73
  76. package/src/js/utils.ts +51 -31
  77. package/src/js/workers/clustering-worker.ts +50 -42
  78. package/src/test/gradientCategoricalRuleset.spec.ts +55 -38
  79. package/src/test/monolith.spec.ts +718 -285
  80. package/test/generate_data.py +108 -0
  81. package/test/glyphmap-data.js +1041 -0
  82. package/test/heatmap-data.js +1027 -0
  83. package/test/index.html +21 -0
  84. package/test/oncoprint-glyphmap.js +79 -0
  85. package/test/oncoprint-heatmap.js +123 -0
  86. package/tsconfig.json +4 -10
  87. package/tsconfig.test.json +11 -0
  88. package/.idea/misc.xml +0 -6
  89. package/.idea/modules.xml +0 -8
  90. package/.idea/oncoprintjs.iml +0 -12
  91. package/.idea/vcs.xml +0 -6
  92. package/.idea/workspace.xml +0 -105
  93. package/dist/.gitkeep +0 -0
  94. package/dist/js/minimaputils.d.ts +0 -0
  95. package/dist/oncoprint.bundle.js +0 -44313
  96. package/jest.config.js +0 -12
  97. package/src/js/minimaputils.ts +0 -0
  98. package/typings/custom.d.ts +0 -7
  99. package/typings/missing.d.ts +0 -7
  100. package/webpack.config.js +0 -43
package/src/js/heatmapcolors.ts CHANGED
@@ -1,523 +1,523 @@
1
1
  // Colours for the oncoprint heatmap feature
2
2
  // viridis comes from matplotlib's default colour set, created by Stéfan van der Walt and Nathaniel Smith
3
3
 
4
- import {RGBAColor} from "./oncoprintruleset";
4
+ import { RGBAColor } from './oncoprintruleset';
5
5
 
6
6
  export default {
7
7
  viridis: [
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- [69.182775,5.085210,88.553595,1.000000],
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- [69.511470,6.518565,90.038715,1.000000],
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- [69.821295,8.031735,91.507515,1.000000],
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- [70.112760,9.626760,92.958465,1.000000],
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- [70.385610,11.262585,94.391820,1.000000],
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- [70.639590,12.837720,95.807325,1.000000],
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- [70.874955,14.362620,97.203705,1.000000],
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- [71.091705,15.846975,98.580960,1.000000],
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- [71.289330,17.298180,99.938835,1.000000],
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- [71.468085,18.721335,101.276565,1.000000],
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- [71.627970,20.121285,102.593895,1.000000],
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- [71.768730,21.501600,103.890570,1.000000],
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- [71.890620,22.864830,105.165825,1.000000],
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- [71.993385,24.213525,106.419405,1.000000],
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- [72.077280,25.549980,107.650800,1.000000],
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- [72.142050,26.875215,108.860010,1.000000],
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- [72.188205,28.191015,110.046270,1.000000],
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- [72.215235,29.498400,111.209325,1.000000],
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- [72.223395,30.798135,112.348920,1.000000],
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- [72.212685,32.091240,113.464800,1.000000],
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- [69.616530,52.152600,127.938855,1.000000],
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- [69.001725,54.587595,129.298260,1.000000],
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- [68.673540,55.798590,129.942135,1.000000],
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- [68.331840,57.004995,130.562040,1.000000],
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- [67.977900,58.206810,131.158995,1.000000],
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- [67.611975,59.403780,131.732745,1.000000],
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- [67.234065,60.595905,132.284310,1.000000],
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- [66.845190,61.782930,132.813435,1.000000],
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- [66.445605,62.965110,133.321140,1.000000],
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- [66.036075,64.141935,133.807680,1.000000],
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- [65.617110,65.313150,134.273565,1.000000],
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- [65.189475,66.479265,134.719560,1.000000],
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- [64.753425,67.639770,135.145665,1.000000],
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- [64.309470,68.794665,135.552645,1.000000],
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- [63.858375,69.943950,135.941265,1.000000],
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- [63.400395,71.087625,136.311780,1.000000],
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- [62.936805,72.225435,136.664955,1.000000],
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- [62.467860,73.357125,137.001300,1.000000],
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- [61.993815,74.483460,137.321580,1.000000],
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- [61.515435,75.603675,137.625795,1.000000],
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- [61.033230,76.718025,137.915220,1.000000],
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- [60.547455,77.826510,138.189855,1.000000],
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- [60.059130,78.929385,138.450720,1.000000],
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