oncoprintjs 5.0.3 → 6.0.1

package/rules/geneticrules.ts

@@ -1,36 +1,35 @@
-import * as $ from "jquery";
+import * as $ from 'jquery';
 import {
     GeneticAlterationRuleParams,
     IGeneticAlterationRuleSetParams,
     RuleSetParams,
-    RuleSetType
-} from "../src/js/oncoprintruleset";
-import {shallowExtend} from "../src/js/utils";
+    RuleSetType,
+} from '../src/js/oncoprintruleset';
+import { shallowExtend } from '../src/js/utils';
 
 export const MUT_COLOR_MISSENSE = '#008000';
 export const MUT_COLOR_MISSENSE_PASSENGER = '#53D400';
 export const MUT_COLOR_INFRAME = '#993404';
 export const MUT_COLOR_INFRAME_PASSENGER = '#a68028';
-export const MUT_COLOR_TRUNC = "#000000";
+export const MUT_COLOR_TRUNC = '#000000';
 export const MUT_COLOR_TRUNC_PASSENGER = '#708090';
 export const MUT_COLOR_FUSION = '#8B00C9';
 export const MUT_COLOR_PROMOTER = '#00B7CE';
-export const MUT_COLOR_OTHER = '#cf58bc';//'#cfb537';
+export const MUT_COLOR_OTHER = '#cf58bc'; //'#cfb537';
 
-export const MRNA_COLOR_HIGH = "#ff9999";
-export const MRNA_COLOR_LOW = "#6699cc";
+export const MRNA_COLOR_HIGH = '#ff9999';
+export const MRNA_COLOR_LOW = '#6699cc';
 export const MUT_COLOR_GERMLINE = '#FFFFFF';
 
-export const PROT_COLOR_HIGH = "#ff3df8";
-export const PROT_COLOR_LOW = "#00E1FF";
+export const PROT_COLOR_HIGH = '#ff3df8';
+export const PROT_COLOR_LOW = '#00E1FF';
 
-export const CNA_COLOR_AMP = "#ff0000";
-export const CNA_COLOR_GAIN = "#ffb6c1";
-export const CNA_COLOR_HETLOSS = "#8fd8d8";
-export const CNA_COLOR_HOMDEL = "#0000ff";
-
-export const DEFAULT_GREY = "#BEBEBE";
+export const CNA_COLOR_AMP = '#ff0000';
+export const CNA_COLOR_GAIN = '#ffb6c1';
+export const CNA_COLOR_HETLOSS = '#8fd8d8';
+export const CNA_COLOR_HOMDEL = '#0000ff';
 
+export const DEFAULT_GREY = '#BEBEBE';
 
 const MUTATION_LEGEND_ORDER = 0;
 const FUSION_LEGEND_ORDER = 1;
@@ -45,431 +44,471 @@ const PROT_HIGH_LEGEND_ORDER = 31;
 const PROT_LOW_LEGEND_ORDER = 32;
 
 enum ShapeId {
-    defaultGrayRectangle="defaultGrayRectangle",
+    defaultGrayRectangle = 'defaultGrayRectangle',
 
-    ampRectangle="ampRectangle",
-    gainRectangle="gainRectangle",
-    homdelRectangle="homdelRectangle",
-    hetlossRectangle="hetlossRectangle",
+    ampRectangle = 'ampRectangle',
+    gainRectangle = 'gainRectangle',
+    homdelRectangle = 'homdelRectangle',
+    hetlossRectangle = 'hetlossRectangle',
 
-    mrnaHighRectangle="mrnaHighRectangle",
-    mrnaLowRectangle="mrnaLowRectangle",
+    mrnaHighRectangle = 'mrnaHighRectangle',
+    mrnaLowRectangle = 'mrnaLowRectangle',
 
-    protHighRectangle="protHighRectangle",
-    protLowRectangle="protLowRectangle",
+    protHighRectangle = 'protHighRectangle',
+    protLowRectangle = 'protLowRectangle',
 
-    fusionRectangle="fusionRectangle",
+    fusionRectangle = 'fusionRectangle',
 
-    germlineRectangle="germlineRectangle",
+    germlineRectangle = 'germlineRectangle',
 
-    missenseMutationDriverRectangle="missenseMutationDriverRectangle",
-    missenseMutationVUSRectangle="missenseMutationVUSRectangle",
-    otherMutationRectangle="otherMutationRectangle",
-    promoterMutationRectangle="promoterMutationRectangle",
-    truncatingMutationDriverRectangle="truncatingMutationDriverRectangle",
-    truncatingMutationVUSRectangle="truncatingMutationVUSRectangle",
-    inframeMutationDriverRectangle="inframeMutationDriverRectangle",
-    inframeMutationVUSRectangle="inframeMutationVUSRectangle",
+    missenseMutationDriverRectangle = 'missenseMutationDriverRectangle',
+    missenseMutationVUSRectangle = 'missenseMutationVUSRectangle',
+    otherMutationRectangle = 'otherMutationRectangle',
+    promoterMutationRectangle = 'promoterMutationRectangle',
+    truncatingMutationDriverRectangle = 'truncatingMutationDriverRectangle',
+    truncatingMutationVUSRectangle = 'truncatingMutationVUSRectangle',
+    inframeMutationDriverRectangle = 'inframeMutationDriverRectangle',
+    inframeMutationVUSRectangle = 'inframeMutationVUSRectangle',
 }
 
 const shapeBank = {
     [ShapeId.defaultGrayRectangle]: {
-        'type': 'rectangle',
-        'fill': DEFAULT_GREY,
-        'z': 1
+        type: 'rectangle',
+        fill: DEFAULT_GREY,
+        z: 1,
     },
     [ShapeId.ampRectangle]: {
-        'type': 'rectangle',
-        'fill': CNA_COLOR_AMP,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 2,
+        type: 'rectangle',
+        fill: CNA_COLOR_AMP,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 2,
     },
     [ShapeId.gainRectangle]: {
-        'type': 'rectangle',
-        'fill': CNA_COLOR_GAIN,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 2,
+        type: 'rectangle',
+        fill: CNA_COLOR_GAIN,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 2,
     },
-    [ShapeId.homdelRectangle]:{
-        'type': 'rectangle',
-        'fill': CNA_COLOR_HOMDEL,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 2,
+    [ShapeId.homdelRectangle]: {
+        type: 'rectangle',
+        fill: CNA_COLOR_HOMDEL,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 2,
     },
-    [ShapeId.hetlossRectangle]:{
-        'type': 'rectangle',
-        'fill': CNA_COLOR_HETLOSS,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 2,
+    [ShapeId.hetlossRectangle]: {
+        type: 'rectangle',
+        fill: CNA_COLOR_HETLOSS,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 2,
     },
-    [ShapeId.mrnaHighRectangle]:{
-        'type': 'rectangle',
-        'fill': 'rgba(0, 0, 0, 0)',
-        'stroke': MRNA_COLOR_HIGH,
+    [ShapeId.mrnaHighRectangle]: {
+        type: 'rectangle',
+        fill: 'rgba(0, 0, 0, 0)',
+        stroke: MRNA_COLOR_HIGH,
         'stroke-width': 2,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 3,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 3,
     },
-    [ShapeId.mrnaLowRectangle]:{
-        'type': 'rectangle',
-        'fill': 'rgba(0, 0, 0, 0)',
-        'stroke': MRNA_COLOR_LOW,
+    [ShapeId.mrnaLowRectangle]: {
+        type: 'rectangle',
+        fill: 'rgba(0, 0, 0, 0)',
+        stroke: MRNA_COLOR_LOW,
         'stroke-width': 2,
-        'x': 0,
-        'y': 0,
-        'width': 100,
-        'height': 100,
-        'z': 3,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 100,
+        z: 3,
     },
-    [ShapeId.protHighRectangle]:{
-        'type': 'rectangle',
-        'fill': PROT_COLOR_HIGH,
-        'x':0,
-        'y':0,
-        'width':100,
-        'height':20,
-        'z': 4,
+    [ShapeId.protHighRectangle]: {
+        type: 'rectangle',
+        fill: PROT_COLOR_HIGH,
+        x: 0,
+        y: 0,
+        width: 100,
+        height: 20,
+        z: 4,
     },
-    [ShapeId.protLowRectangle]:{
-        'type': 'rectangle',
-        'fill': PROT_COLOR_LOW,
-        'x':0,
-        'y':80,
-        'width':100,
-        'height':20,
-        'z': 4,
+    [ShapeId.protLowRectangle]: {
+        type: 'rectangle',
+        fill: PROT_COLOR_LOW,
+        x: 0,
+        y: 80,
+        width: 100,
+        height: 20,
+        z: 4,
     },
-    [ShapeId.fusionRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_FUSION,
-        'x': 0,
-        'y': 20,
-        'width': 100,
-        'height': 60,
-        'z': 5
+    [ShapeId.fusionRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_FUSION,
+        x: 0,
+        y: 20,
+        width: 100,
+        height: 60,
+        z: 5,
     },
-    [ShapeId.germlineRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_GERMLINE,
-        'x': 0,
-        'y': 46,
-        'width': 100,
-        'height': 8,
-        'z': 7
+    [ShapeId.germlineRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_GERMLINE,
+        x: 0,
+        y: 46,
+        width: 100,
+        height: 8,
+        z: 7,
     },
-    [ShapeId.missenseMutationDriverRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_MISSENSE,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6
+    [ShapeId.missenseMutationDriverRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_MISSENSE,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.missenseMutationVUSRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_MISSENSE_PASSENGER,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6
+    [ShapeId.missenseMutationVUSRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_MISSENSE_PASSENGER,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.otherMutationRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_OTHER,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
+    [ShapeId.otherMutationRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_OTHER,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.promoterMutationRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_PROMOTER,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
+    [ShapeId.promoterMutationRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_PROMOTER,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.truncatingMutationDriverRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_TRUNC,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
+    [ShapeId.truncatingMutationDriverRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_TRUNC,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.truncatingMutationVUSRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_TRUNC_PASSENGER,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
+    [ShapeId.truncatingMutationVUSRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_TRUNC_PASSENGER,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.inframeMutationDriverRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_INFRAME,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
+    [ShapeId.inframeMutationDriverRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_INFRAME,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
+    },
+    [ShapeId.inframeMutationVUSRectangle]: {
+        type: 'rectangle',
+        fill: MUT_COLOR_INFRAME_PASSENGER,
+        x: 0,
+        y: 33.33,
+        width: 100,
+        height: 33.33,
+        z: 6,
     },
-    [ShapeId.inframeMutationVUSRectangle]:{
-        'type': 'rectangle',
-        'fill': MUT_COLOR_INFRAME_PASSENGER,
-        'x': 0,
-        'y': 33.33,
-        'width': 100,
-        'height': 33.33,
-        'z': 6,
-    }
 };
 
-const non_mutation_rule_params:GeneticAlterationRuleParams = {
+const non_mutation_rule_params: GeneticAlterationRuleParams = {
     // Default: gray rectangle
     always: {
         shapes: [shapeBank[ShapeId.defaultGrayRectangle]],
-        legend_label: "No alterations",
-        legend_order: Number.POSITIVE_INFINITY // put at the end always
+        legend_label: 'No alterations',
+        legend_order: Number.POSITIVE_INFINITY, // put at the end always
     },
-    conditional:{
+    conditional: {
         // Copy number alteration
-        'disp_cna': {
+        disp_cna: {
             // Red rectangle for amplification
-            'amp': {
+            amp: {
                 shapes: [shapeBank[ShapeId.ampRectangle]],
                 legend_label: 'Amplification',
-                legend_order: AMP_LEGEND_ORDER
+                legend_order: AMP_LEGEND_ORDER,
             },
             // Light red rectangle for gain
-            'gain': {
+            gain: {
                 shapes: [shapeBank[ShapeId.gainRectangle]],
                 legend_label: 'Gain',
-                legend_order: GAIN_LEGEND_ORDER
+                legend_order: GAIN_LEGEND_ORDER,
             },
             // Blue rectangle for deep deletion
-            'homdel': {
+            homdel: {
                 shapes: [shapeBank[ShapeId.homdelRectangle]],
                 legend_label: 'Deep Deletion',
-                legend_order: HOMDEL_LEGEND_ORDER
+                legend_order: HOMDEL_LEGEND_ORDER,
             },
             // Light blue rectangle for shallow deletion
-            'hetloss': {
+            hetloss: {
                 shapes: [shapeBank[ShapeId.hetlossRectangle]],
                 legend_label: 'Shallow Deletion',
-                legend_order: HETLOSS_LEGEND_ORDER
-            }
+                legend_order: HETLOSS_LEGEND_ORDER,
+            },
         },
         // mRNA regulation
-        'disp_mrna': {
+        disp_mrna: {
             // Light red outline for High
-            'high': {
+            high: {
                 shapes: [shapeBank[ShapeId.mrnaHighRectangle]],
                 legend_label: 'mRNA High',
-                legend_order: MRNA_HIGH_LEGEND_ORDER
+                legend_order: MRNA_HIGH_LEGEND_ORDER,
             },
             // Light blue outline for downregulation
-            'low': {
+            low: {
                 shapes: [shapeBank[ShapeId.mrnaLowRectangle]],
                 legend_label: 'mRNA Low',
-                legend_order: MRNA_LOW_LEGEND_ORDER
+                legend_order: MRNA_LOW_LEGEND_ORDER,
             },
         },
         // protein expression regulation
-        'disp_prot': {
+        disp_prot: {
             // small up arrow for upregulated
-            'high': {
+            high: {
                 shapes: [shapeBank[ShapeId.protHighRectangle]],
                 legend_label: 'Protein High',
-                legend_order: PROT_HIGH_LEGEND_ORDER
+                legend_order: PROT_HIGH_LEGEND_ORDER,
             },
             // small down arrow for upregulated
-            'low': {
+            low: {
                 shapes: [shapeBank[ShapeId.protLowRectangle]],
                 legend_label: 'Protein Low',
-                legend_order: PROT_LOW_LEGEND_ORDER
-            }
+                legend_order: PROT_LOW_LEGEND_ORDER,
+            },
         },
         // fusion
-        'disp_fusion': {
+        disp_fusion: {
             // tall inset purple rectangle for fusion
-            'true': {
+            true: {
                 shapes: [shapeBank[ShapeId.fusionRectangle]],
                 legend_label: 'Fusion',
-                legend_order: FUSION_LEGEND_ORDER
-            }
-        }
-    }
+                legend_order: FUSION_LEGEND_ORDER,
+            },
+        },
+    },
 };
 
 export const germline_rule_params = {
     // germline
-    'disp_germ': {
+    disp_germ: {
         // white stripe in the middle
-        'true': {
-            shapes: [{
-                'type': 'rectangle',
-                'fill': MUT_COLOR_GERMLINE,
-                'x': 0,
-                'y': 46,
-                'width': 100,
-                'height': 8,
-                'z': 7
-            }],
+        true: {
+            shapes: [
+                {
+                    type: 'rectangle',
+                    fill: MUT_COLOR_GERMLINE,
+                    x: 0,
+                    y: 46,
+                    width: 100,
+                    height: 8,
+                    z: 7,
+                },
+            ],
             legend_label: 'Germline Mutation',
-            legend_order: GERMLINE_LEGEND_ORDER
-        }
-    }
+            legend_order: GERMLINE_LEGEND_ORDER,
+        },
+    },
 };
 
-const base_genetic_rule_set_params:Partial<IGeneticAlterationRuleSetParams> = {
+const base_genetic_rule_set_params: Partial<IGeneticAlterationRuleSetParams> = {
     type: RuleSetType.GENE,
     legend_label: 'Genetic Alteration',
     na_legend_label: 'Not profiled',
-    legend_base_color: DEFAULT_GREY
+    legend_base_color: DEFAULT_GREY,
 };
 
-export const genetic_rule_set_same_color_for_all_no_recurrence:IGeneticAlterationRuleSetParams =
-    shallowExtend(base_genetic_rule_set_params, {
-        'rule_params': {
-            always:non_mutation_rule_params.always,
+export const genetic_rule_set_same_color_for_all_no_recurrence: IGeneticAlterationRuleSetParams = shallowExtend(
+    base_genetic_rule_set_params,
+    {
+        rule_params: {
+            always: non_mutation_rule_params.always,
             conditional: shallowExtend(non_mutation_rule_params.conditional, {
-                'disp_mut': {
+                disp_mut: {
                     'trunc,inframe,missense,promoter,other,trunc_rec,inframe_rec,missense_rec,promoter_rec,other_rec': {
-                        shapes: [shapeBank[ShapeId.missenseMutationDriverRectangle]],
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationDriverRectangle],
+                        ],
                         legend_label: 'Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
-                    }
-                }
-            } as GeneticAlterationRuleParams["conditional"])
-        }
-    }) as IGeneticAlterationRuleSetParams;
+                        legend_order: MUTATION_LEGEND_ORDER,
+                    },
+                },
+            } as GeneticAlterationRuleParams['conditional']),
+        },
+    }
+) as IGeneticAlterationRuleSetParams;
 
-export const genetic_rule_set_same_color_for_all_recurrence:IGeneticAlterationRuleSetParams =
-    shallowExtend(base_genetic_rule_set_params, {
-        'rule_params': {
-            always:non_mutation_rule_params.always,
+export const genetic_rule_set_same_color_for_all_recurrence: IGeneticAlterationRuleSetParams = shallowExtend(
+    base_genetic_rule_set_params,
+    {
+        rule_params: {
+            always: non_mutation_rule_params.always,
             conditional: shallowExtend(non_mutation_rule_params.conditional, {
-                'disp_mut': {
+                disp_mut: {
                     'missense_rec,inframe_rec,trunc_rec,promoter_rec,other_rec': {
-                        shapes: [shapeBank[ShapeId.missenseMutationDriverRectangle]],
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationDriverRectangle],
+                        ],
                         legend_label: 'Mutation (putative driver)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'missense,inframe,trunc,promoter,other': {
-                        shapes: [shapeBank[ShapeId.missenseMutationVUSRectangle]],
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationVUSRectangle],
+                        ],
                         legend_label: 'Mutation (unknown significance)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                 },
-            } as GeneticAlterationRuleParams["conditional"])
-        }
-    }) as IGeneticAlterationRuleSetParams;
+            } as GeneticAlterationRuleParams['conditional']),
+        },
+    }
+) as IGeneticAlterationRuleSetParams;
 
-export const genetic_rule_set_different_colors_no_recurrence:IGeneticAlterationRuleSetParams =
-    shallowExtend(base_genetic_rule_set_params, {
-        'rule_params': {
-            always:non_mutation_rule_params.always,
-            conditional:shallowExtend(non_mutation_rule_params.conditional, {
-                'disp_mut': {
-                    'other,other_rec':{
+export const genetic_rule_set_different_colors_no_recurrence: IGeneticAlterationRuleSetParams = shallowExtend(
+    base_genetic_rule_set_params,
+    {
+        rule_params: {
+            always: non_mutation_rule_params.always,
+            conditional: shallowExtend(non_mutation_rule_params.conditional, {
+                disp_mut: {
+                    'other,other_rec': {
                         shapes: [shapeBank[ShapeId.otherMutationRectangle]],
                         legend_label: 'Other Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'promoter,promoter_rec': {
                         shapes: [shapeBank[ShapeId.promoterMutationRectangle]],
                         legend_label: 'Promoter Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'trunc,trunc_rec': {
-                        shapes: [shapeBank[ShapeId.truncatingMutationDriverRectangle]],
+                        shapes: [
+                            shapeBank[
+                                ShapeId.truncatingMutationDriverRectangle
+                            ],
+                        ],
                         legend_label: 'Truncating Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'inframe,inframe_rec': {
-                        shapes: [shapeBank[ShapeId.inframeMutationDriverRectangle]],
+                        shapes: [
+                            shapeBank[ShapeId.inframeMutationDriverRectangle],
+                        ],
                         legend_label: 'Inframe Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'missense,missense_rec': {
-                        shapes: [shapeBank[ShapeId.missenseMutationDriverRectangle]],
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationDriverRectangle],
+                        ],
                         legend_label: 'Missense Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                }
-            } as GeneticAlterationRuleParams["conditional"])
-        }
-    }) as IGeneticAlterationRuleSetParams;
+                },
+            } as GeneticAlterationRuleParams['conditional']),
+        },
+    }
+) as IGeneticAlterationRuleSetParams;
 
-export const genetic_rule_set_different_colors_recurrence:IGeneticAlterationRuleSetParams =
-    shallowExtend(base_genetic_rule_set_params, {
-        'rule_params': {
-            always:non_mutation_rule_params.always,
+export const genetic_rule_set_different_colors_recurrence: IGeneticAlterationRuleSetParams = shallowExtend(
+    base_genetic_rule_set_params,
+    {
+        rule_params: {
+            always: non_mutation_rule_params.always,
             conditional: shallowExtend(non_mutation_rule_params.conditional, {
-                'disp_mut': {
-                    'other,other_rec':{
+                disp_mut: {
+                    'other,other_rec': {
                         shapes: [shapeBank[ShapeId.otherMutationRectangle]],
                         legend_label: 'Other Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
                     'promoter,promoter_rec': {
                         shapes: [shapeBank[ShapeId.promoterMutationRectangle]],
                         legend_label: 'Promoter Mutation',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'trunc_rec': {
-                        shapes: [shapeBank[ShapeId.truncatingMutationDriverRectangle]],
+                    trunc_rec: {
+                        shapes: [
+                            shapeBank[
+                                ShapeId.truncatingMutationDriverRectangle
+                            ],
+                        ],
                         legend_label: 'Truncating Mutation (putative driver)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'trunc': {
-                        shapes: [shapeBank[ShapeId.truncatingMutationVUSRectangle]],
-                        legend_label: 'Truncating Mutation (unknown significance)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                    trunc: {
+                        shapes: [
+                            shapeBank[ShapeId.truncatingMutationVUSRectangle],
+                        ],
+                        legend_label:
+                            'Truncating Mutation (unknown significance)',
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'inframe_rec': {
-                        shapes: [shapeBank[ShapeId.inframeMutationDriverRectangle]],
+                    inframe_rec: {
+                        shapes: [
+                            shapeBank[ShapeId.inframeMutationDriverRectangle],
+                        ],
                         legend_label: 'Inframe Mutation (putative driver)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'inframe': {
-                        shapes: [shapeBank[ShapeId.inframeMutationVUSRectangle]],
+                    inframe: {
+                        shapes: [
+                            shapeBank[ShapeId.inframeMutationVUSRectangle],
+                        ],
                         legend_label: 'Inframe Mutation (unknown significance)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'missense_rec': {
-                        shapes: [shapeBank[ShapeId.missenseMutationDriverRectangle]],
+                    missense_rec: {
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationDriverRectangle],
+                        ],
                         legend_label: 'Missense Mutation (putative driver)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                    'missense': {
-                        shapes: [shapeBank[ShapeId.missenseMutationVUSRectangle]],
-                        legend_label: 'Missense Mutation (unknown significance)',
-                        legend_order: MUTATION_LEGEND_ORDER
+                    missense: {
+                        shapes: [
+                            shapeBank[ShapeId.missenseMutationVUSRectangle],
+                        ],
+                        legend_label:
+                            'Missense Mutation (unknown significance)',
+                        legend_order: MUTATION_LEGEND_ORDER,
                     },
-                }
-            } as GeneticAlterationRuleParams["conditional"])
-        }
-    }) as IGeneticAlterationRuleSetParams;
+                },
+            } as GeneticAlterationRuleParams['conditional']),
+        },
+    }
+) as IGeneticAlterationRuleSetParams;