oncoprintjs 5.0.3 → 6.0.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +34 -0
- package/dist/index.d.ts +4 -0
- package/dist/index.es.js +14746 -0
- package/dist/index.es.js.map +1 -0
- package/dist/index.js +14760 -0
- package/dist/index.js.map +1 -0
- package/dist/js/CachedProperty.d.ts +10 -10
- package/dist/js/binarysearch.d.ts +1 -1
- package/dist/js/bucketsort.d.ts +16 -16
- package/dist/js/clustering.d.ts +14 -14
- package/dist/js/extractrgba.d.ts +4 -4
- package/dist/js/haselementsininterval.d.ts +1 -1
- package/dist/js/heatmapcolors.d.ts +5 -4
- package/dist/js/makesvgelement.d.ts +1 -1
- package/dist/js/modelutils.d.ts +7 -7
- package/dist/js/oncoprint.d.ts +168 -170
- package/dist/js/oncoprintheaderview.d.ts +23 -22
- package/dist/js/oncoprintlabelview.d.ts +79 -78
- package/dist/js/oncoprintlegendrenderer.d.ts +32 -31
- package/dist/js/oncoprintminimapview.d.ts +69 -68
- package/dist/js/oncoprintmodel.d.ts +403 -398
- package/dist/js/oncoprintruleset.d.ts +176 -177
- package/dist/js/oncoprintshape.d.ts +67 -67
- package/dist/js/oncoprintshapetosvg.d.ts +2 -2
- package/dist/js/oncoprintshapetovertexes.d.ts +5 -5
- package/dist/js/oncoprinttooltip.d.ts +23 -22
- package/dist/js/oncoprinttrackinfoview.d.ts +40 -39
- package/dist/js/oncoprinttrackoptionsview.d.ts +58 -57
- package/dist/js/oncoprintwebglcellview.d.ts +168 -167
- package/dist/js/oncoprintzoomslider.d.ts +28 -27
- package/dist/js/polyfill.d.ts +4 -4
- package/dist/js/precomputedcomparator.d.ts +13 -13
- package/dist/js/shaders.d.ts +2 -2
- package/dist/js/svgfactory.d.ts +24 -23
- package/dist/js/utils.d.ts +16 -16
- package/dist/js/workers/clustering-worker.d.ts +19 -20
- package/dist/test/gradientCategoricalRuleset.spec.d.ts +1 -1
- package/dist/test/monolith.spec.d.ts +1 -1
- package/jest.config.ts +2 -0
- package/package.json +20 -26
- package/rollup.config.ts +14 -0
- package/rules/geneticrules.ts +344 -305
- package/server.js +11 -0
- package/src/img/menudots.svg +9 -9
- package/src/img/zoomtofit.svg +12 -12
- package/src/index.tsx +13 -0
- package/src/js/CachedProperty.ts +6 -7
- package/src/js/binarysearch.ts +8 -3
- package/src/js/bucketsort.ts +89 -47
- package/src/js/clustering.ts +22 -10
- package/src/js/extractrgba.ts +16 -12
- package/src/js/haselementsininterval.ts +8 -4
- package/src/js/heatmapcolors.ts +515 -515
- package/src/js/main.js +1 -1
- package/src/js/makesvgelement.ts +2 -2
- package/src/js/modelutils.ts +11 -8
- package/src/js/oncoprint.ts +706 -385
- package/src/js/oncoprintheaderview.ts +165 -125
- package/src/js/oncoprintlabelview.ts +388 -170
- package/src/js/oncoprintlegendrenderer.ts +203 -72
- package/src/js/oncoprintminimapview.ts +965 -423
- package/src/js/oncoprintmodel.ts +905 -532
- package/src/js/oncoprintruleset.ts +694 -379
- package/src/js/oncoprintshape.ts +240 -97
- package/src/js/oncoprintshapetosvg.ts +77 -26
- package/src/js/oncoprintshapetovertexes.ts +153 -48
- package/src/js/oncoprinttooltip.ts +58 -27
- package/src/js/oncoprinttrackinfoview.ts +115 -59
- package/src/js/oncoprinttrackoptionsview.ts +354 -187
- package/src/js/oncoprintwebglcellview.ts +951 -415
- package/src/js/oncoprintzoomslider.ts +172 -107
- package/src/js/polyfill.ts +7 -3
- package/src/js/precomputedcomparator.ts +133 -50
- package/src/js/shaders.ts +2 -4
- package/src/js/svgfactory.ts +128 -73
- package/src/js/utils.ts +51 -31
- package/src/js/workers/clustering-worker.ts +50 -42
- package/src/test/gradientCategoricalRuleset.spec.ts +55 -38
- package/src/test/monolith.spec.ts +718 -285
- package/test/generate_data.py +108 -0
- package/test/glyphmap-data.js +1041 -0
- package/test/heatmap-data.js +1027 -0
- package/test/index.html +21 -0
- package/test/oncoprint-glyphmap.js +79 -0
- package/test/oncoprint-heatmap.js +123 -0
- package/tsconfig.json +4 -10
- package/tsconfig.test.json +11 -0
- package/.idea/misc.xml +0 -6
- package/.idea/modules.xml +0 -8
- package/.idea/oncoprintjs.iml +0 -12
- package/.idea/vcs.xml +0 -6
- package/.idea/workspace.xml +0 -105
- package/dist/.gitkeep +0 -0
- package/dist/js/minimaputils.d.ts +0 -0
- package/dist/oncoprint.bundle.js +0 -44313
- package/jest.config.js +0 -12
- package/src/js/minimaputils.ts +0 -0
- package/typings/custom.d.ts +0 -7
- package/typings/missing.d.ts +0 -7
- package/webpack.config.js +0 -43
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992
|
+
},
|
|
993
|
+
{
|
|
994
|
+
vaf: -0.13288057758695562,
|
|
995
|
+
sample: 'TCGA-42',
|
|
996
|
+
},
|
|
997
|
+
{
|
|
998
|
+
vaf: -0.2977908794017283,
|
|
999
|
+
sample: 'TCGA-43',
|
|
1000
|
+
},
|
|
1001
|
+
{
|
|
1002
|
+
vaf: -0.3090129690471222,
|
|
1003
|
+
sample: 'TCGA-44',
|
|
1004
|
+
},
|
|
1005
|
+
{
|
|
1006
|
+
vaf: 0.0,
|
|
1007
|
+
sample: 'TCGA-45',
|
|
1008
|
+
},
|
|
1009
|
+
{
|
|
1010
|
+
vaf: 0.0,
|
|
1011
|
+
sample: 'TCGA-46',
|
|
1012
|
+
},
|
|
1013
|
+
{
|
|
1014
|
+
vaf: 0.0,
|
|
1015
|
+
sample: 'TCGA-47',
|
|
1016
|
+
},
|
|
1017
|
+
{
|
|
1018
|
+
vaf: 0.0,
|
|
1019
|
+
sample: 'TCGA-48',
|
|
1020
|
+
},
|
|
1021
|
+
{
|
|
1022
|
+
vaf: 0.0,
|
|
1023
|
+
sample: 'TCGA-49',
|
|
1024
|
+
},
|
|
1025
|
+
],
|
|
1026
|
+
},
|
|
1027
|
+
];
|