oncoprintjs 5.0.3 → 6.0.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (100) hide show
  1. package/README.md +34 -0
  2. package/dist/index.d.ts +4 -0
  3. package/dist/index.es.js +14746 -0
  4. package/dist/index.es.js.map +1 -0
  5. package/dist/index.js +14760 -0
  6. package/dist/index.js.map +1 -0
  7. package/dist/js/CachedProperty.d.ts +10 -10
  8. package/dist/js/binarysearch.d.ts +1 -1
  9. package/dist/js/bucketsort.d.ts +16 -16
  10. package/dist/js/clustering.d.ts +14 -14
  11. package/dist/js/extractrgba.d.ts +4 -4
  12. package/dist/js/haselementsininterval.d.ts +1 -1
  13. package/dist/js/heatmapcolors.d.ts +5 -4
  14. package/dist/js/makesvgelement.d.ts +1 -1
  15. package/dist/js/modelutils.d.ts +7 -7
  16. package/dist/js/oncoprint.d.ts +168 -170
  17. package/dist/js/oncoprintheaderview.d.ts +23 -22
  18. package/dist/js/oncoprintlabelview.d.ts +79 -78
  19. package/dist/js/oncoprintlegendrenderer.d.ts +32 -31
  20. package/dist/js/oncoprintminimapview.d.ts +69 -68
  21. package/dist/js/oncoprintmodel.d.ts +403 -398
  22. package/dist/js/oncoprintruleset.d.ts +176 -177
  23. package/dist/js/oncoprintshape.d.ts +67 -67
  24. package/dist/js/oncoprintshapetosvg.d.ts +2 -2
  25. package/dist/js/oncoprintshapetovertexes.d.ts +5 -5
  26. package/dist/js/oncoprinttooltip.d.ts +23 -22
  27. package/dist/js/oncoprinttrackinfoview.d.ts +40 -39
  28. package/dist/js/oncoprinttrackoptionsview.d.ts +58 -57
  29. package/dist/js/oncoprintwebglcellview.d.ts +168 -167
  30. package/dist/js/oncoprintzoomslider.d.ts +28 -27
  31. package/dist/js/polyfill.d.ts +4 -4
  32. package/dist/js/precomputedcomparator.d.ts +13 -13
  33. package/dist/js/shaders.d.ts +2 -2
  34. package/dist/js/svgfactory.d.ts +24 -23
  35. package/dist/js/utils.d.ts +16 -16
  36. package/dist/js/workers/clustering-worker.d.ts +19 -20
  37. package/dist/test/gradientCategoricalRuleset.spec.d.ts +1 -1
  38. package/dist/test/monolith.spec.d.ts +1 -1
  39. package/jest.config.ts +2 -0
  40. package/package.json +20 -26
  41. package/rollup.config.ts +14 -0
  42. package/rules/geneticrules.ts +344 -305
  43. package/server.js +11 -0
  44. package/src/img/menudots.svg +9 -9
  45. package/src/img/zoomtofit.svg +12 -12
  46. package/src/index.tsx +13 -0
  47. package/src/js/CachedProperty.ts +6 -7
  48. package/src/js/binarysearch.ts +8 -3
  49. package/src/js/bucketsort.ts +89 -47
  50. package/src/js/clustering.ts +22 -10
  51. package/src/js/extractrgba.ts +16 -12
  52. package/src/js/haselementsininterval.ts +8 -4
  53. package/src/js/heatmapcolors.ts +515 -515
  54. package/src/js/main.js +1 -1
  55. package/src/js/makesvgelement.ts +2 -2
  56. package/src/js/modelutils.ts +11 -8
  57. package/src/js/oncoprint.ts +706 -385
  58. package/src/js/oncoprintheaderview.ts +165 -125
  59. package/src/js/oncoprintlabelview.ts +388 -170
  60. package/src/js/oncoprintlegendrenderer.ts +203 -72
  61. package/src/js/oncoprintminimapview.ts +965 -423
  62. package/src/js/oncoprintmodel.ts +905 -532
  63. package/src/js/oncoprintruleset.ts +694 -379
  64. package/src/js/oncoprintshape.ts +240 -97
  65. package/src/js/oncoprintshapetosvg.ts +77 -26
  66. package/src/js/oncoprintshapetovertexes.ts +153 -48
  67. package/src/js/oncoprinttooltip.ts +58 -27
  68. package/src/js/oncoprinttrackinfoview.ts +115 -59
  69. package/src/js/oncoprinttrackoptionsview.ts +354 -187
  70. package/src/js/oncoprintwebglcellview.ts +951 -415
  71. package/src/js/oncoprintzoomslider.ts +172 -107
  72. package/src/js/polyfill.ts +7 -3
  73. package/src/js/precomputedcomparator.ts +133 -50
  74. package/src/js/shaders.ts +2 -4
  75. package/src/js/svgfactory.ts +128 -73
  76. package/src/js/utils.ts +51 -31
  77. package/src/js/workers/clustering-worker.ts +50 -42
  78. package/src/test/gradientCategoricalRuleset.spec.ts +55 -38
  79. package/src/test/monolith.spec.ts +718 -285
  80. package/test/generate_data.py +108 -0
  81. package/test/glyphmap-data.js +1041 -0
  82. package/test/heatmap-data.js +1027 -0
  83. package/test/index.html +21 -0
  84. package/test/oncoprint-glyphmap.js +79 -0
  85. package/test/oncoprint-heatmap.js +123 -0
  86. package/tsconfig.json +4 -10
  87. package/tsconfig.test.json +11 -0
  88. package/.idea/misc.xml +0 -6
  89. package/.idea/modules.xml +0 -8
  90. package/.idea/oncoprintjs.iml +0 -12
  91. package/.idea/vcs.xml +0 -6
  92. package/.idea/workspace.xml +0 -105
  93. package/dist/.gitkeep +0 -0
  94. package/dist/js/minimaputils.d.ts +0 -0
  95. package/dist/oncoprint.bundle.js +0 -44313
  96. package/jest.config.js +0 -12
  97. package/src/js/minimaputils.ts +0 -0
  98. package/typings/custom.d.ts +0 -7
  99. package/typings/missing.d.ts +0 -7
  100. package/webpack.config.js +0 -43
@@ -0,0 +1,1027 @@
1
+ var hm_data = [
2
+ {
3
+ gene: 'GENE0',
4
+ data: [
5
+ {
6
+ vaf: 1.5210648764527586,
7
+ sample: 'TCGA-00',
8
+ },
9
+ {
10
+ vaf: 0.4242120301869339,
11
+ sample: 'TCGA-01',
12
+ },
13
+ {
14
+ vaf: 1.1419531633207796,
15
+ sample: 'TCGA-02',
16
+ },
17
+ {
18
+ vaf: 0.6806715828549048,
19
+ sample: 'TCGA-03',
20
+ },
21
+ {
22
+ vaf: 1.6915387510701865,
23
+ sample: 'TCGA-04',
24
+ },
25
+ {
26
+ vaf: 1.694749143656006,
27
+ sample: 'TCGA-05',
28
+ },
29
+ {
30
+ vaf: 0.2744026215364157,
31
+ sample: 'TCGA-06',
32
+ },
33
+ {
34
+ vaf: -0.3833639553950554,
35
+ sample: 'TCGA-07',
36
+ },
37
+ {
38
+ vaf: -0.5829383973350819,
39
+ sample: 'TCGA-08',
40
+ },
41
+ {
42
+ vaf: 1.6103793791072052,
43
+ sample: 'TCGA-09',
44
+ },
45
+ {
46
+ vaf: -0.1888592577840289,
47
+ sample: 'TCGA-10',
48
+ },
49
+ {
50
+ vaf: 0.49318364570131246,
51
+ sample: 'TCGA-11',
52
+ },
53
+ {
54
+ vaf: -2.133701559668439,
55
+ sample: 'TCGA-12',
56
+ },
57
+ {
58
+ vaf: -0.9222561940237373,
59
+ sample: 'TCGA-13',
60
+ },
61
+ {
62
+ vaf: -3.1268258087567435,
63
+ sample: 'TCGA-14',
64
+ },
65
+ {
66
+ vaf: -2.7306777528648247,
67
+ sample: 'TCGA-15',
68
+ },
69
+ {
70
+ vaf: -2.3848798091812755,
71
+ sample: 'TCGA-16',
72
+ },
73
+ {
74
+ vaf: -1.905648410682926,
75
+ sample: 'TCGA-17',
76
+ },
77
+ {
78
+ vaf: -2.042171451290579,
79
+ sample: 'TCGA-18',
80
+ },
81
+ {
82
+ vaf: -2.2868871923899077,
83
+ sample: 'TCGA-19',
84
+ },
85
+ {
86
+ vaf: -2.0616264020956474,
87
+ sample: 'TCGA-20',
88
+ },
89
+ {
90
+ vaf: -2.1073052762911746,
91
+ sample: 'TCGA-21',
92
+ },
93
+ {
94
+ vaf: -2.719604388551793,
95
+ sample: 'TCGA-22',
96
+ },
97
+ {
98
+ vaf: -2.812992988554077,
99
+ sample: 'TCGA-23',
100
+ },
101
+ {
102
+ vaf: -1.7254836422760604,
103
+ sample: 'TCGA-24',
104
+ },
105
+ {
106
+ vaf: -2.890915082995528,
107
+ sample: 'TCGA-25',
108
+ },
109
+ {
110
+ vaf: -3.1573552591908536,
111
+ sample: 'TCGA-26',
112
+ },
113
+ {
114
+ vaf: -2.3122922511256934,
115
+ sample: 'TCGA-27',
116
+ },
117
+ {
118
+ vaf: 1.5327792143584575,
119
+ sample: 'TCGA-28',
120
+ },
121
+ {
122
+ vaf: 1.469358769900285,
123
+ sample: 'TCGA-29',
124
+ },
125
+ {
126
+ vaf: 0.1549474256969163,
127
+ sample: 'TCGA-30',
128
+ },
129
+ {
130
+ vaf: 0.37816251960217356,
131
+ sample: 'TCGA-31',
132
+ },
133
+ {
134
+ vaf: -0.8877857476301128,
135
+ sample: 'TCGA-32',
136
+ },
137
+ {
138
+ vaf: -1.980796468223927,
139
+ sample: 'TCGA-33',
140
+ },
141
+ {
142
+ vaf: -0.3479121493261526,
143
+ sample: 'TCGA-34',
144
+ },
145
+ {
146
+ vaf: 0.15634896910398005,
147
+ sample: 'TCGA-35',
148
+ },
149
+ {
150
+ vaf: 1.2302906807277207,
151
+ sample: 'TCGA-36',
152
+ },
153
+ {
154
+ vaf: 1.2023798487844113,
155
+ sample: 'TCGA-37',
156
+ },
157
+ {
158
+ vaf: -0.3873268174079523,
159
+ sample: 'TCGA-38',
160
+ },
161
+ {
162
+ vaf: -0.30230275057533557,
163
+ sample: 'TCGA-39',
164
+ },
165
+ {
166
+ vaf: -1.0485529650670926,
167
+ sample: 'TCGA-40',
168
+ },
169
+ {
170
+ vaf: -1.4200179371789752,
171
+ sample: 'TCGA-41',
172
+ },
173
+ {
174
+ vaf: -1.7062701906250126,
175
+ sample: 'TCGA-42',
176
+ },
177
+ {
178
+ vaf: 1.9507753952317897,
179
+ sample: 'TCGA-43',
180
+ },
181
+ {
182
+ vaf: -0.5096521817516535,
183
+ sample: 'TCGA-44',
184
+ },
185
+ {
186
+ vaf: 0.0,
187
+ sample: 'TCGA-45',
188
+ },
189
+ {
190
+ vaf: 0.0,
191
+ sample: 'TCGA-46',
192
+ },
193
+ {
194
+ vaf: 0.0,
195
+ sample: 'TCGA-47',
196
+ },
197
+ {
198
+ vaf: 0.0,
199
+ sample: 'TCGA-48',
200
+ },
201
+ {
202
+ vaf: 0.0,
203
+ sample: 'TCGA-49',
204
+ },
205
+ ],
206
+ },
207
+ {
208
+ gene: 'GENE1',
209
+ data: [
210
+ {
211
+ vaf: 0.4036859615494919,
212
+ sample: 'TCGA-00',
213
+ },
214
+ {
215
+ vaf: 0.9474327037304537,
216
+ sample: 'TCGA-01',
217
+ },
218
+ {
219
+ vaf: -0.9362798058465069,
220
+ sample: 'TCGA-02',
221
+ },
222
+ {
223
+ vaf: 1.1887785967938285,
224
+ sample: 'TCGA-03',
225
+ },
226
+ {
227
+ vaf: 1.5238910238342056,
228
+ sample: 'TCGA-04',
229
+ },
230
+ {
231
+ vaf: 1.0884220870446615,
232
+ sample: 'TCGA-05',
233
+ },
234
+ {
235
+ vaf: 0.6891138283015283,
236
+ sample: 'TCGA-06',
237
+ },
238
+ {
239
+ vaf: 1.0974001662687833,
240
+ sample: 'TCGA-07',
241
+ },
242
+ {
243
+ vaf: 1.39904634564013,
244
+ sample: 'TCGA-08',
245
+ },
246
+ {
247
+ vaf: -1.7725927564266502,
248
+ sample: 'TCGA-09',
249
+ },
250
+ {
251
+ vaf: 2.955912308250694,
252
+ sample: 'TCGA-10',
253
+ },
254
+ {
255
+ vaf: 1.3900933226879264,
256
+ sample: 'TCGA-11',
257
+ },
258
+ {
259
+ vaf: -2.157667016163816,
260
+ sample: 'TCGA-12',
261
+ },
262
+ {
263
+ vaf: 0.2567234972982093,
264
+ sample: 'TCGA-13',
265
+ },
266
+ {
267
+ vaf: -2.7047002758562337,
268
+ sample: 'TCGA-14',
269
+ },
270
+ {
271
+ vaf: -1.0567392750305054,
272
+ sample: 'TCGA-15',
273
+ },
274
+ {
275
+ vaf: -1.252811665795368,
276
+ sample: 'TCGA-16',
277
+ },
278
+ {
279
+ vaf: -3.188944955203736,
280
+ sample: 'TCGA-17',
281
+ },
282
+ {
283
+ vaf: -1.2267470225974004,
284
+ sample: 'TCGA-18',
285
+ },
286
+ {
287
+ vaf: -3.1838806401933177,
288
+ sample: 'TCGA-19',
289
+ },
290
+ {
291
+ vaf: -4.65917223799674,
292
+ sample: 'TCGA-20',
293
+ },
294
+ {
295
+ vaf: -1.3936804756406191,
296
+ sample: 'TCGA-21',
297
+ },
298
+ {
299
+ vaf: -3.7558905834377194,
300
+ sample: 'TCGA-22',
301
+ },
302
+ {
303
+ vaf: -1.5490655381940852,
304
+ sample: 'TCGA-23',
305
+ },
306
+ {
307
+ vaf: -2.684010897737217,
308
+ sample: 'TCGA-24',
309
+ },
310
+ {
311
+ vaf: -0.3404492038101279,
312
+ sample: 'TCGA-25',
313
+ },
314
+ {
315
+ vaf: -0.9314906006839909,
316
+ sample: 'TCGA-26',
317
+ },
318
+ {
319
+ vaf: -2.4533858038513876,
320
+ sample: 'TCGA-27',
321
+ },
322
+ {
323
+ vaf: -0.31155253212737266,
324
+ sample: 'TCGA-28',
325
+ },
326
+ {
327
+ vaf: 0.05616534222974544,
328
+ sample: 'TCGA-29',
329
+ },
330
+ {
331
+ vaf: -1.1651498407833565,
332
+ sample: 'TCGA-30',
333
+ },
334
+ {
335
+ vaf: 0.9008264869541871,
336
+ sample: 'TCGA-31',
337
+ },
338
+ {
339
+ vaf: 0.46566243973045984,
340
+ sample: 'TCGA-32',
341
+ },
342
+ {
343
+ vaf: -1.5362436862772237,
344
+ sample: 'TCGA-33',
345
+ },
346
+ {
347
+ vaf: 1.4882521937955997,
348
+ sample: 'TCGA-34',
349
+ },
350
+ {
351
+ vaf: 1.8958891760305832,
352
+ sample: 'TCGA-35',
353
+ },
354
+ {
355
+ vaf: 1.1787795711596507,
356
+ sample: 'TCGA-36',
357
+ },
358
+ {
359
+ vaf: -0.17992483581235091,
360
+ sample: 'TCGA-37',
361
+ },
362
+ {
363
+ vaf: -1.0707526215105425,
364
+ sample: 'TCGA-38',
365
+ },
366
+ {
367
+ vaf: 1.0544517269311366,
368
+ sample: 'TCGA-39',
369
+ },
370
+ {
371
+ vaf: -0.40317694697317963,
372
+ sample: 'TCGA-40',
373
+ },
374
+ {
375
+ vaf: 1.2224450703824274,
376
+ sample: 'TCGA-41',
377
+ },
378
+ {
379
+ vaf: 0.2082749780768603,
380
+ sample: 'TCGA-42',
381
+ },
382
+ {
383
+ vaf: 0.9766390364837128,
384
+ sample: 'TCGA-43',
385
+ },
386
+ {
387
+ vaf: 0.3563663971744019,
388
+ sample: 'TCGA-44',
389
+ },
390
+ {
391
+ vaf: 0.0,
392
+ sample: 'TCGA-45',
393
+ },
394
+ {
395
+ vaf: 0.0,
396
+ sample: 'TCGA-46',
397
+ },
398
+ {
399
+ vaf: 0.0,
400
+ sample: 'TCGA-47',
401
+ },
402
+ {
403
+ vaf: 0.0,
404
+ sample: 'TCGA-48',
405
+ },
406
+ {
407
+ vaf: 0.0,
408
+ sample: 'TCGA-49',
409
+ },
410
+ ],
411
+ },
412
+ {
413
+ gene: 'GENE2',
414
+ data: [
415
+ {
416
+ vaf: 0.34759141761297996,
417
+ sample: 'TCGA-00',
418
+ },
419
+ {
420
+ vaf: 0.6090466248123989,
421
+ sample: 'TCGA-01',
422
+ },
423
+ {
424
+ vaf: 1.4937417773491886,
425
+ sample: 'TCGA-02',
426
+ },
427
+ {
428
+ vaf: 0.8838960609656334,
429
+ sample: 'TCGA-03',
430
+ },
431
+ {
432
+ vaf: -1.0306844677814944,
433
+ sample: 'TCGA-04',
434
+ },
435
+ {
436
+ vaf: 3.0644928613593194,
437
+ sample: 'TCGA-05',
438
+ },
439
+ {
440
+ vaf: 0.8894593427675274,
441
+ sample: 'TCGA-06',
442
+ },
443
+ {
444
+ vaf: 2.0201727117157997,
445
+ sample: 'TCGA-07',
446
+ },
447
+ {
448
+ vaf: 0.30795015221560884,
449
+ sample: 'TCGA-08',
450
+ },
451
+ {
452
+ vaf: 2.536377054245798,
453
+ sample: 'TCGA-09',
454
+ },
455
+ {
456
+ vaf: 1.2863436888922797,
457
+ sample: 'TCGA-10',
458
+ },
459
+ {
460
+ vaf: 1.6088438344754508,
461
+ sample: 'TCGA-11',
462
+ },
463
+ {
464
+ vaf: -0.8612256850547025,
465
+ sample: 'TCGA-12',
466
+ },
467
+ {
468
+ vaf: 1.9100649530990337,
469
+ sample: 'TCGA-13',
470
+ },
471
+ {
472
+ vaf: -0.2680033709513804,
473
+ sample: 'TCGA-14',
474
+ },
475
+ {
476
+ vaf: 0.8024563957963952,
477
+ sample: 'TCGA-15',
478
+ },
479
+ {
480
+ vaf: 0.947251967773748,
481
+ sample: 'TCGA-16',
482
+ },
483
+ {
484
+ vaf: -0.1550100930908342,
485
+ sample: 'TCGA-17',
486
+ },
487
+ {
488
+ vaf: 0.6140793703460803,
489
+ sample: 'TCGA-18',
490
+ },
491
+ {
492
+ vaf: 0.9222066715665268,
493
+ sample: 'TCGA-19',
494
+ },
495
+ {
496
+ vaf: 0.37642553115562943,
497
+ sample: 'TCGA-20',
498
+ },
499
+ {
500
+ vaf: -1.0994007905841945,
501
+ sample: 'TCGA-21',
502
+ },
503
+ {
504
+ vaf: 0.298238174206056,
505
+ sample: 'TCGA-22',
506
+ },
507
+ {
508
+ vaf: 1.3263858966870303,
509
+ sample: 'TCGA-23',
510
+ },
511
+ {
512
+ vaf: -0.6945678597313655,
513
+ sample: 'TCGA-24',
514
+ },
515
+ {
516
+ vaf: -0.14963454032767076,
517
+ sample: 'TCGA-25',
518
+ },
519
+ {
520
+ vaf: -0.43515355172163744,
521
+ sample: 'TCGA-26',
522
+ },
523
+ {
524
+ vaf: 1.8492637284793418,
525
+ sample: 'TCGA-27',
526
+ },
527
+ {
528
+ vaf: 2.3121623889713177,
529
+ sample: 'TCGA-28',
530
+ },
531
+ {
532
+ vaf: 1.7859225969058794,
533
+ sample: 'TCGA-29',
534
+ },
535
+ {
536
+ vaf: 2.559077367707409,
537
+ sample: 'TCGA-30',
538
+ },
539
+ {
540
+ vaf: 2.719644504815491,
541
+ sample: 'TCGA-31',
542
+ },
543
+ {
544
+ vaf: 2.6353064556083146,
545
+ sample: 'TCGA-32',
546
+ },
547
+ {
548
+ vaf: 3.156703855272364,
549
+ sample: 'TCGA-33',
550
+ },
551
+ {
552
+ vaf: 3.5785214977288784,
553
+ sample: 'TCGA-34',
554
+ },
555
+ {
556
+ vaf: 0.6764332949464997,
557
+ sample: 'TCGA-35',
558
+ },
559
+ {
560
+ vaf: 0.5765908166149409,
561
+ sample: 'TCGA-36',
562
+ },
563
+ {
564
+ vaf: -0.20829875557799488,
565
+ sample: 'TCGA-37',
566
+ },
567
+ {
568
+ vaf: 0.3960067126616453,
569
+ sample: 'TCGA-38',
570
+ },
571
+ {
572
+ vaf: -1.0930615087305058,
573
+ sample: 'TCGA-39',
574
+ },
575
+ {
576
+ vaf: -1.4912575927056055,
577
+ sample: 'TCGA-40',
578
+ },
579
+ {
580
+ vaf: 0.4393917012645369,
581
+ sample: 'TCGA-41',
582
+ },
583
+ {
584
+ vaf: 0.16667349537252904,
585
+ sample: 'TCGA-42',
586
+ },
587
+ {
588
+ vaf: 0.6350314368921064,
589
+ sample: 'TCGA-43',
590
+ },
591
+ {
592
+ vaf: 2.383144774863942,
593
+ sample: 'TCGA-44',
594
+ },
595
+ {
596
+ vaf: 0.0,
597
+ sample: 'TCGA-45',
598
+ },
599
+ {
600
+ vaf: 0.0,
601
+ sample: 'TCGA-46',
602
+ },
603
+ {
604
+ vaf: 0.0,
605
+ sample: 'TCGA-47',
606
+ },
607
+ {
608
+ vaf: 0.0,
609
+ sample: 'TCGA-48',
610
+ },
611
+ {
612
+ vaf: 0.0,
613
+ sample: 'TCGA-49',
614
+ },
615
+ ],
616
+ },
617
+ {
618
+ gene: 'GENE3',
619
+ data: [
620
+ {
621
+ vaf: -1.5452533661469547,
622
+ sample: 'TCGA-00',
623
+ },
624
+ {
625
+ vaf: 0.7111452896827009,
626
+ sample: 'TCGA-01',
627
+ },
628
+ {
629
+ vaf: 0.1898181645347884,
630
+ sample: 'TCGA-02',
631
+ },
632
+ {
633
+ vaf: 0.8018462295649984,
634
+ sample: 'TCGA-03',
635
+ },
636
+ {
637
+ vaf: -1.128087559641579,
638
+ sample: 'TCGA-04',
639
+ },
640
+ {
641
+ vaf: -0.9810271184607877,
642
+ sample: 'TCGA-05',
643
+ },
644
+ {
645
+ vaf: 1.8039166976839418,
646
+ sample: 'TCGA-06',
647
+ },
648
+ {
649
+ vaf: -1.5600158227215473,
650
+ sample: 'TCGA-07',
651
+ },
652
+ {
653
+ vaf: -0.6359497006783208,
654
+ sample: 'TCGA-08',
655
+ },
656
+ {
657
+ vaf: 0.6368913626026953,
658
+ sample: 'TCGA-09',
659
+ },
660
+ {
661
+ vaf: -0.4022750322851444,
662
+ sample: 'TCGA-10',
663
+ },
664
+ {
665
+ vaf: 0.0829536797532936,
666
+ sample: 'TCGA-11',
667
+ },
668
+ {
669
+ vaf: 0.9494208069257608,
670
+ sample: 'TCGA-12',
671
+ },
672
+ {
673
+ vaf: 0.0875512413851909,
674
+ sample: 'TCGA-13',
675
+ },
676
+ {
677
+ vaf: -1.225435518830168,
678
+ sample: 'TCGA-14',
679
+ },
680
+ {
681
+ vaf: 0.8443629764015471,
682
+ sample: 'TCGA-15',
683
+ },
684
+ {
685
+ vaf: -1.0002153473895647,
686
+ sample: 'TCGA-16',
687
+ },
688
+ {
689
+ vaf: -1.5447710967776116,
690
+ sample: 'TCGA-17',
691
+ },
692
+ {
693
+ vaf: 1.1880297923523018,
694
+ sample: 'TCGA-18',
695
+ },
696
+ {
697
+ vaf: 0.3169426119248496,
698
+ sample: 'TCGA-19',
699
+ },
700
+ {
701
+ vaf: 0.920858823780819,
702
+ sample: 'TCGA-20',
703
+ },
704
+ {
705
+ vaf: 0.3187276529430212,
706
+ sample: 'TCGA-21',
707
+ },
708
+ {
709
+ vaf: 0.8568306119026912,
710
+ sample: 'TCGA-22',
711
+ },
712
+ {
713
+ vaf: -0.6510255933001469,
714
+ sample: 'TCGA-23',
715
+ },
716
+ {
717
+ vaf: -1.0342428417844647,
718
+ sample: 'TCGA-24',
719
+ },
720
+ {
721
+ vaf: 0.681594518281627,
722
+ sample: 'TCGA-25',
723
+ },
724
+ {
725
+ vaf: -0.8034096641738411,
726
+ sample: 'TCGA-26',
727
+ },
728
+ {
729
+ vaf: -0.6895497777502005,
730
+ sample: 'TCGA-27',
731
+ },
732
+ {
733
+ vaf: 3.349654456993174,
734
+ sample: 'TCGA-28',
735
+ },
736
+ {
737
+ vaf: 2.235856076093557,
738
+ sample: 'TCGA-29',
739
+ },
740
+ {
741
+ vaf: 1.5622085261984215,
742
+ sample: 'TCGA-30',
743
+ },
744
+ {
745
+ vaf: 4.364531848102471,
746
+ sample: 'TCGA-31',
747
+ },
748
+ {
749
+ vaf: 2.3105508154500622,
750
+ sample: 'TCGA-32',
751
+ },
752
+ {
753
+ vaf: 2.3477064000649808,
754
+ sample: 'TCGA-33',
755
+ },
756
+ {
757
+ vaf: 2.478810687698889,
758
+ sample: 'TCGA-34',
759
+ },
760
+ {
761
+ vaf: -1.6020576556067476,
762
+ sample: 'TCGA-35',
763
+ },
764
+ {
765
+ vaf: -1.1043833394284506,
766
+ sample: 'TCGA-36',
767
+ },
768
+ {
769
+ vaf: 0.052165079260974405,
770
+ sample: 'TCGA-37',
771
+ },
772
+ {
773
+ vaf: -0.7395629963913133,
774
+ sample: 'TCGA-38',
775
+ },
776
+ {
777
+ vaf: 1.5430145954067358,
778
+ sample: 'TCGA-39',
779
+ },
780
+ {
781
+ vaf: -1.2928569097234486,
782
+ sample: 'TCGA-40',
783
+ },
784
+ {
785
+ vaf: 0.26705086934918293,
786
+ sample: 'TCGA-41',
787
+ },
788
+ {
789
+ vaf: -0.0392828182274956,
790
+ sample: 'TCGA-42',
791
+ },
792
+ {
793
+ vaf: -1.1680934977411974,
794
+ sample: 'TCGA-43',
795
+ },
796
+ {
797
+ vaf: 0.5232766605317537,
798
+ sample: 'TCGA-44',
799
+ },
800
+ {
801
+ vaf: 0.0,
802
+ sample: 'TCGA-45',
803
+ },
804
+ {
805
+ vaf: 0.0,
806
+ sample: 'TCGA-46',
807
+ },
808
+ {
809
+ vaf: 0.0,
810
+ sample: 'TCGA-47',
811
+ },
812
+ {
813
+ vaf: 0.0,
814
+ sample: 'TCGA-48',
815
+ },
816
+ {
817
+ vaf: 0.0,
818
+ sample: 'TCGA-49',
819
+ },
820
+ ],
821
+ },
822
+ {
823
+ gene: 'GENE4',
824
+ data: [
825
+ {
826
+ vaf: -0.8994490292628752,
827
+ sample: 'TCGA-00',
828
+ },
829
+ {
830
+ vaf: -0.12994411215248125,
831
+ sample: 'TCGA-01',
832
+ },
833
+ {
834
+ vaf: -1.8065268517353166,
835
+ sample: 'TCGA-02',
836
+ },
837
+ {
838
+ vaf: 1.158130679618188,
839
+ sample: 'TCGA-03',
840
+ },
841
+ {
842
+ vaf: -0.6181640451285697,
843
+ sample: 'TCGA-04',
844
+ },
845
+ {
846
+ vaf: -1.1801782039968503,
847
+ sample: 'TCGA-05',
848
+ },
849
+ {
850
+ vaf: 0.16638308203191432,
851
+ sample: 'TCGA-06',
852
+ },
853
+ {
854
+ vaf: -0.9607197873885533,
855
+ sample: 'TCGA-07',
856
+ },
857
+ {
858
+ vaf: -1.8342584714027534,
859
+ sample: 'TCGA-08',
860
+ },
861
+ {
862
+ vaf: -1.8467175057975553,
863
+ sample: 'TCGA-09',
864
+ },
865
+ {
866
+ vaf: 0.1937731526901325,
867
+ sample: 'TCGA-10',
868
+ },
869
+ {
870
+ vaf: -0.6595734381462669,
871
+ sample: 'TCGA-11',
872
+ },
873
+ {
874
+ vaf: 0.7863279621089762,
875
+ sample: 'TCGA-12',
876
+ },
877
+ {
878
+ vaf: -0.46641909673594306,
879
+ sample: 'TCGA-13',
880
+ },
881
+ {
882
+ vaf: -0.9444462559182504,
883
+ sample: 'TCGA-14',
884
+ },
885
+ {
886
+ vaf: -0.41004969320254847,
887
+ sample: 'TCGA-15',
888
+ },
889
+ {
890
+ vaf: -0.017020413861440594,
891
+ sample: 'TCGA-16',
892
+ },
893
+ {
894
+ vaf: 0.3791517355550818,
895
+ sample: 'TCGA-17',
896
+ },
897
+ {
898
+ vaf: 2.259308950690852,
899
+ sample: 'TCGA-18',
900
+ },
901
+ {
902
+ vaf: -0.04225715166064269,
903
+ sample: 'TCGA-19',
904
+ },
905
+ {
906
+ vaf: -0.955945000492777,
907
+ sample: 'TCGA-20',
908
+ },
909
+ {
910
+ vaf: -0.34598177569938643,
911
+ sample: 'TCGA-21',
912
+ },
913
+ {
914
+ vaf: -0.4635959746460942,
915
+ sample: 'TCGA-22',
916
+ },
917
+ {
918
+ vaf: 0.4814814737734622,
919
+ sample: 'TCGA-23',
920
+ },
921
+ {
922
+ vaf: -1.5407970144446248,
923
+ sample: 'TCGA-24',
924
+ },
925
+ {
926
+ vaf: 0.06326199420033171,
927
+ sample: 'TCGA-25',
928
+ },
929
+ {
930
+ vaf: 0.1565065379653756,
931
+ sample: 'TCGA-26',
932
+ },
933
+ {
934
+ vaf: 0.23218103620027578,
935
+ sample: 'TCGA-27',
936
+ },
937
+ {
938
+ vaf: 1.1569304498433515,
939
+ sample: 'TCGA-28',
940
+ },
941
+ {
942
+ vaf: 2.5220259959595133,
943
+ sample: 'TCGA-29',
944
+ },
945
+ {
946
+ vaf: 2.5203441859920526,
947
+ sample: 'TCGA-30',
948
+ },
949
+ {
950
+ vaf: 3.6203582983435125,
951
+ sample: 'TCGA-31',
952
+ },
953
+ {
954
+ vaf: 3.698457149107336,
955
+ sample: 'TCGA-32',
956
+ },
957
+ {
958
+ vaf: 3.0037708890862693,
959
+ sample: 'TCGA-33',
960
+ },
961
+ {
962
+ vaf: 3.9318483741143035,
963
+ sample: 'TCGA-34',
964
+ },
965
+ {
966
+ vaf: 0.7811981017099934,
967
+ sample: 'TCGA-35',
968
+ },
969
+ {
970
+ vaf: 1.4944845444913688,
971
+ sample: 'TCGA-36',
972
+ },
973
+ {
974
+ vaf: -2.0699850250135325,
975
+ sample: 'TCGA-37',
976
+ },
977
+ {
978
+ vaf: 0.42625873077810095,
979
+ sample: 'TCGA-38',
980
+ },
981
+ {
982
+ vaf: 0.6769080350302455,
983
+ sample: 'TCGA-39',
984
+ },
985
+ {
986
+ vaf: -0.637437025552229,
987
+ sample: 'TCGA-40',
988
+ },
989
+ {
990
+ vaf: -0.39727181432879766,
991
+ sample: 'TCGA-41',
992
+ },
993
+ {
994
+ vaf: -0.13288057758695562,
995
+ sample: 'TCGA-42',
996
+ },
997
+ {
998
+ vaf: -0.2977908794017283,
999
+ sample: 'TCGA-43',
1000
+ },
1001
+ {
1002
+ vaf: -0.3090129690471222,
1003
+ sample: 'TCGA-44',
1004
+ },
1005
+ {
1006
+ vaf: 0.0,
1007
+ sample: 'TCGA-45',
1008
+ },
1009
+ {
1010
+ vaf: 0.0,
1011
+ sample: 'TCGA-46',
1012
+ },
1013
+ {
1014
+ vaf: 0.0,
1015
+ sample: 'TCGA-47',
1016
+ },
1017
+ {
1018
+ vaf: 0.0,
1019
+ sample: 'TCGA-48',
1020
+ },
1021
+ {
1022
+ vaf: 0.0,
1023
+ sample: 'TCGA-49',
1024
+ },
1025
+ ],
1026
+ },
1027
+ ];