okstra 0.108.0 → 0.110.0

package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py

@@ -0,0 +1,488 @@
+import itertools as it
+
+import pytest
+
+import networkx as nx
+from networkx.algorithms.connectivity import EdgeComponentAuxGraph, bridge_components
+from networkx.algorithms.connectivity.edge_kcomponents import general_k_edge_subgraphs
+from networkx.utils import pairwise
+
+# ----------------
+# Helper functions
+# ----------------
+
+
+def fset(list_of_sets):
+    """allows == to be used for list of sets"""
+    return set(map(frozenset, list_of_sets))
+
+
+def _assert_subgraph_edge_connectivity(G, ccs_subgraph, k):
+    """
+    tests properties of k-edge-connected subgraphs
+
+    the actual edge connectivity should be no less than k unless the cc is a
+    single node.
+    """
+    for cc in ccs_subgraph:
+        C = G.subgraph(cc)
+        if len(cc) > 1:
+            connectivity = nx.edge_connectivity(C)
+            assert connectivity >= k
+
+
+def _memo_connectivity(G, u, v, memo):
+    edge = (u, v)
+    if edge in memo:
+        return memo[edge]
+    if not G.is_directed():
+        redge = (v, u)
+        if redge in memo:
+            return memo[redge]
+    memo[edge] = nx.edge_connectivity(G, *edge)
+    return memo[edge]
+
+
+def _all_pairs_connectivity(G, cc, k, memo):
+    # Brute force check
+    for u, v in it.combinations(cc, 2):
+        # Use a memoization dict to save on computation
+        connectivity = _memo_connectivity(G, u, v, memo)
+        if G.is_directed():
+            connectivity = min(connectivity, _memo_connectivity(G, v, u, memo))
+        assert connectivity >= k
+
+
+def _assert_local_cc_edge_connectivity(G, ccs_local, k, memo):
+    """
+    tests properties of k-edge-connected components
+
+    the local edge connectivity between each pair of nodes in the original
+    graph should be no less than k unless the cc is a single node.
+    """
+    for cc in ccs_local:
+        if len(cc) > 1:
+            # Strategy for testing a bit faster: If the subgraph has high edge
+            # connectivity then it must have local connectivity
+            C = G.subgraph(cc)
+            connectivity = nx.edge_connectivity(C)
+            if connectivity < k:
+                # Otherwise do the brute force (with memoization) check
+                _all_pairs_connectivity(G, cc, k, memo)
+
+
+# Helper function
+def _check_edge_connectivity(G):
+    """
+    Helper - generates all k-edge-components using the aux graph.  Checks the
+    both local and subgraph edge connectivity of each cc. Also checks that
+    alternate methods of computing the k-edge-ccs generate the same result.
+    """
+    # Construct the auxiliary graph that can be used to make each k-cc or k-sub
+    aux_graph = EdgeComponentAuxGraph.construct(G)
+
+    # memoize the local connectivity in this graph
+    memo = {}
+
+    for k in it.count(1):
+        # Test "local" k-edge-components and k-edge-subgraphs
+        ccs_local = fset(aux_graph.k_edge_components(k))
+        ccs_subgraph = fset(aux_graph.k_edge_subgraphs(k))
+
+        # Check connectivity properties that should be guaranteed by the
+        # algorithms.
+        _assert_local_cc_edge_connectivity(G, ccs_local, k, memo)
+        _assert_subgraph_edge_connectivity(G, ccs_subgraph, k)
+
+        if k == 1 or k == 2 and not G.is_directed():
+            assert ccs_local == ccs_subgraph, (
+                "Subgraphs and components should be the same when k == 1 or (k == 2 and not G.directed())"
+            )
+
+        if G.is_directed():
+            # Test special case methods are the same as the aux graph
+            if k == 1:
+                alt_sccs = fset(nx.strongly_connected_components(G))
+                assert alt_sccs == ccs_local, "k=1 failed alt"
+                assert alt_sccs == ccs_subgraph, "k=1 failed alt"
+        else:
+            # Test special case methods are the same as the aux graph
+            if k == 1:
+                alt_ccs = fset(nx.connected_components(G))
+                assert alt_ccs == ccs_local, "k=1 failed alt"
+                assert alt_ccs == ccs_subgraph, "k=1 failed alt"
+            elif k == 2:
+                alt_bridge_ccs = fset(bridge_components(G))
+                assert alt_bridge_ccs == ccs_local, "k=2 failed alt"
+                assert alt_bridge_ccs == ccs_subgraph, "k=2 failed alt"
+            # if new methods for k == 3 or k == 4 are implemented add them here
+
+        # Check the general subgraph method works by itself
+        alt_subgraph_ccs = fset(
+            [set(C.nodes()) for C in general_k_edge_subgraphs(G, k=k)]
+        )
+        assert alt_subgraph_ccs == ccs_subgraph, "alt subgraph method failed"
+
+        # Stop once k is larger than all special case methods
+        # and we cannot break down ccs any further.
+        if k > 2 and all(len(cc) == 1 for cc in ccs_local):
+            break
+
+
+# ----------------
+# Misc tests
+# ----------------
+
+
+def test_zero_k_exception():
+    G = nx.Graph()
+    # functions that return generators error immediately
+    pytest.raises(ValueError, nx.k_edge_components, G, k=0)
+    pytest.raises(ValueError, nx.k_edge_subgraphs, G, k=0)
+
+    # actual generators only error when you get the first item
+    aux_graph = EdgeComponentAuxGraph.construct(G)
+    pytest.raises(ValueError, list, aux_graph.k_edge_components(k=0))
+    pytest.raises(ValueError, list, aux_graph.k_edge_subgraphs(k=0))
+
+    pytest.raises(ValueError, list, general_k_edge_subgraphs(G, k=0))
+
+
+def test_empty_input():
+    G = nx.Graph()
+    assert [] == list(nx.k_edge_components(G, k=5))
+    assert [] == list(nx.k_edge_subgraphs(G, k=5))
+
+    G = nx.DiGraph()
+    assert [] == list(nx.k_edge_components(G, k=5))
+    assert [] == list(nx.k_edge_subgraphs(G, k=5))
+
+
+def test_not_implemented():
+    G = nx.MultiGraph()
+    pytest.raises(nx.NetworkXNotImplemented, EdgeComponentAuxGraph.construct, G)
+    pytest.raises(nx.NetworkXNotImplemented, nx.k_edge_components, G, k=2)
+    pytest.raises(nx.NetworkXNotImplemented, nx.k_edge_subgraphs, G, k=2)
+    with pytest.raises(nx.NetworkXNotImplemented):
+        next(bridge_components(G))
+    with pytest.raises(nx.NetworkXNotImplemented):
+        next(bridge_components(nx.DiGraph()))
+
+
+def test_general_k_edge_subgraph_quick_return():
+    # tests quick return optimization
+    G = nx.Graph()
+    G.add_node(0)
+    subgraphs = list(general_k_edge_subgraphs(G, k=1))
+    assert len(subgraphs) == 1
+    for subgraph in subgraphs:
+        assert subgraph.number_of_nodes() == 1
+
+    G.add_node(1)
+    subgraphs = list(general_k_edge_subgraphs(G, k=1))
+    assert len(subgraphs) == 2
+    for subgraph in subgraphs:
+        assert subgraph.number_of_nodes() == 1
+
+
+# ----------------
+# Undirected tests
+# ----------------
+
+
+def test_random_gnp():
+    # seeds = [1550709854, 1309423156, 4208992358, 2785630813, 1915069929]
+    seeds = [12, 13]
+
+    for seed in seeds:
+        G = nx.gnp_random_graph(20, 0.2, seed=seed)
+        _check_edge_connectivity(G)
+
+
+def test_configuration():
+    # seeds = [2718183590, 2470619828, 1694705158, 3001036531, 2401251497]
+    seeds = [14, 15]
+    for seed in seeds:
+        deg_seq = nx.random_powerlaw_tree_sequence(20, seed=seed, tries=5000)
+        G = nx.Graph(nx.configuration_model(deg_seq, seed=seed))
+        G.remove_edges_from(nx.selfloop_edges(G))
+        _check_edge_connectivity(G)
+
+
+def test_shell():
+    # seeds = [2057382236, 3331169846, 1840105863, 476020778, 2247498425]
+    seeds = [20]
+    for seed in seeds:
+        constructor = [(12, 70, 0.8), (15, 40, 0.6)]
+        G = nx.random_shell_graph(constructor, seed=seed)
+        _check_edge_connectivity(G)
+
+
+def test_karate():
+    G = nx.karate_club_graph()
+    _check_edge_connectivity(G)
+
+
+def test_tarjan_bridge():
+    # graph from tarjan paper
+    # RE Tarjan - "A note on finding the bridges of a graph"
+    # Information Processing Letters, 1974 - Elsevier
+    # doi:10.1016/0020-0190(74)90003-9.
+    # define 2-connected components and bridges
+    ccs = [
+        (1, 2, 4, 3, 1, 4),
+        (5, 6, 7, 5),
+        (8, 9, 10, 8),
+        (17, 18, 16, 15, 17),
+        (11, 12, 14, 13, 11, 14),
+    ]
+    bridges = [(4, 8), (3, 5), (3, 17)]
+    G = nx.Graph(it.chain(*(pairwise(path) for path in ccs + bridges)))
+    _check_edge_connectivity(G)
+
+
+def test_bridge_cc():
+    # define 2-connected components and bridges
+    cc2 = [(1, 2, 4, 3, 1, 4), (8, 9, 10, 8), (11, 12, 13, 11)]
+    bridges = [(4, 8), (3, 5), (20, 21), (22, 23, 24)]
+    G = nx.Graph(it.chain(*(pairwise(path) for path in cc2 + bridges)))
+    bridge_ccs = fset(bridge_components(G))
+    target_ccs = fset(
+        [{1, 2, 3, 4}, {5}, {8, 9, 10}, {11, 12, 13}, {20}, {21}, {22}, {23}, {24}]
+    )
+    assert bridge_ccs == target_ccs
+    _check_edge_connectivity(G)
+
+
+def test_undirected_aux_graph():
+    # Graph similar to the one in
+    # http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136264
+    a, b, c, d, e, f, g, h, i = "abcdefghi"
+    paths = [
+        (a, d, b, f, c),
+        (a, e, b),
+        (a, e, b, c, g, b, a),
+        (c, b),
+        (f, g, f),
+        (h, i),
+    ]
+    G = nx.Graph(it.chain(*[pairwise(path) for path in paths]))
+    aux_graph = EdgeComponentAuxGraph.construct(G)
+
+    components_1 = fset(aux_graph.k_edge_subgraphs(k=1))
+    target_1 = fset([{a, b, c, d, e, f, g}, {h, i}])
+    assert target_1 == components_1
+
+    # Check that the undirected case for k=1 agrees with CCs
+    alt_1 = fset(nx.k_edge_subgraphs(G, k=1))
+    assert alt_1 == components_1
+
+    components_2 = fset(aux_graph.k_edge_subgraphs(k=2))
+    target_2 = fset([{a, b, c, d, e, f, g}, {h}, {i}])
+    assert target_2 == components_2
+
+    # Check that the undirected case for k=2 agrees with bridge components
+    alt_2 = fset(nx.k_edge_subgraphs(G, k=2))
+    assert alt_2 == components_2
+
+    components_3 = fset(aux_graph.k_edge_subgraphs(k=3))
+    target_3 = fset([{a}, {b, c, f, g}, {d}, {e}, {h}, {i}])
+    assert target_3 == components_3
+
+    components_4 = fset(aux_graph.k_edge_subgraphs(k=4))
+    target_4 = fset([{a}, {b}, {c}, {d}, {e}, {f}, {g}, {h}, {i}])
+    assert target_4 == components_4
+
+    _check_edge_connectivity(G)
+
+
+def test_local_subgraph_difference():
+    paths = [
+        (11, 12, 13, 14, 11, 13, 14, 12),  # first 4-clique
+        (21, 22, 23, 24, 21, 23, 24, 22),  # second 4-clique
+        # paths connecting each node of the 4 cliques
+        (11, 101, 21),
+        (12, 102, 22),
+        (13, 103, 23),
+        (14, 104, 24),
+    ]
+    G = nx.Graph(it.chain(*[pairwise(path) for path in paths]))
+    aux_graph = EdgeComponentAuxGraph.construct(G)
+
+    # Each clique is returned separately in k-edge-subgraphs
+    subgraph_ccs = fset(aux_graph.k_edge_subgraphs(3))
+    subgraph_target = fset(
+        [{101}, {102}, {103}, {104}, {21, 22, 23, 24}, {11, 12, 13, 14}]
+    )
+    assert subgraph_ccs == subgraph_target
+
+    # But in k-edge-ccs they are returned together
+    # because they are locally 3-edge-connected
+    local_ccs = fset(aux_graph.k_edge_components(3))
+    local_target = fset([{101}, {102}, {103}, {104}, {11, 12, 13, 14, 21, 22, 23, 24}])
+    assert local_ccs == local_target
+
+
+def test_local_subgraph_difference_directed():
+    dipaths = [(1, 2, 3, 4, 1), (1, 3, 1)]
+    G = nx.DiGraph(it.chain(*[pairwise(path) for path in dipaths]))
+
+    assert fset(nx.k_edge_components(G, k=1)) == fset(nx.k_edge_subgraphs(G, k=1))
+
+    # Unlike undirected graphs, when k=2, for directed graphs there is a case
+    # where the k-edge-ccs are not the same as the k-edge-subgraphs.
+    # (in directed graphs ccs and subgraphs are the same when k=2)
+    assert fset(nx.k_edge_components(G, k=2)) != fset(nx.k_edge_subgraphs(G, k=2))
+
+    assert fset(nx.k_edge_components(G, k=3)) == fset(nx.k_edge_subgraphs(G, k=3))
+
+    _check_edge_connectivity(G)
+
+
+def test_triangles():
+    paths = [
+        (11, 12, 13, 11),  # first 3-clique
+        (21, 22, 23, 21),  # second 3-clique
+        (11, 21),  # connected by an edge
+    ]
+    G = nx.Graph(it.chain(*[pairwise(path) for path in paths]))
+
+    # subgraph and ccs are the same in all cases here
+    assert fset(nx.k_edge_components(G, k=1)) == fset(nx.k_edge_subgraphs(G, k=1))
+
+    assert fset(nx.k_edge_components(G, k=2)) == fset(nx.k_edge_subgraphs(G, k=2))
+
+    assert fset(nx.k_edge_components(G, k=3)) == fset(nx.k_edge_subgraphs(G, k=3))
+
+    _check_edge_connectivity(G)
+
+
+def test_four_clique():
+    paths = [
+        (11, 12, 13, 14, 11, 13, 14, 12),  # first 4-clique
+        (21, 22, 23, 24, 21, 23, 24, 22),  # second 4-clique
+        # paths connecting the 4 cliques such that they are
+        # 3-connected in G, but not in the subgraph.
+        # Case where the nodes bridging them do not have degree less than 3.
+        (100, 13),
+        (12, 100, 22),
+        (13, 200, 23),
+        (14, 300, 24),
+    ]
+    G = nx.Graph(it.chain(*[pairwise(path) for path in paths]))
+
+    # The subgraphs and ccs are different for k=3
+    local_ccs = fset(nx.k_edge_components(G, k=3))
+    subgraphs = fset(nx.k_edge_subgraphs(G, k=3))
+    assert local_ccs != subgraphs
+
+    # The cliques ares in the same cc
+    clique1 = frozenset(paths[0])
+    clique2 = frozenset(paths[1])
+    assert clique1.union(clique2).union({100}) in local_ccs
+
+    # but different subgraphs
+    assert clique1 in subgraphs
+    assert clique2 in subgraphs
+
+    assert G.degree(100) == 3
+
+    _check_edge_connectivity(G)
+
+
+def test_five_clique():
+    # Make a graph that can be disconnected less than 4 edges, but no node has
+    # degree less than 4.
+    G = nx.disjoint_union(nx.complete_graph(5), nx.complete_graph(5))
+    paths = [
+        # add aux-connections
+        (1, 100, 6),
+        (2, 100, 7),
+        (3, 200, 8),
+        (4, 200, 100),
+    ]
+    G.add_edges_from(it.chain(*[pairwise(path) for path in paths]))
+    assert min(dict(nx.degree(G)).values()) == 4
+
+    # For k=3 they are the same
+    assert fset(nx.k_edge_components(G, k=3)) == fset(nx.k_edge_subgraphs(G, k=3))
+
+    # For k=4 they are the different
+    # the aux nodes are in the same CC as clique 1 but no the same subgraph
+    assert fset(nx.k_edge_components(G, k=4)) != fset(nx.k_edge_subgraphs(G, k=4))
+
+    # For k=5 they are not the same
+    assert fset(nx.k_edge_components(G, k=5)) != fset(nx.k_edge_subgraphs(G, k=5))
+
+    # For k=6 they are the same
+    assert fset(nx.k_edge_components(G, k=6)) == fset(nx.k_edge_subgraphs(G, k=6))
+    _check_edge_connectivity(G)
+
+
+# ----------------
+# Undirected tests
+# ----------------
+
+
+def test_directed_aux_graph():
+    # Graph similar to the one in
+    # http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136264
+    a, b, c, d, e, f, g, h, i = "abcdefghi"
+    dipaths = [
+        (a, d, b, f, c),
+        (a, e, b),
+        (a, e, b, c, g, b, a),
+        (c, b),
+        (f, g, f),
+        (h, i),
+    ]
+    G = nx.DiGraph(it.chain(*[pairwise(path) for path in dipaths]))
+    aux_graph = EdgeComponentAuxGraph.construct(G)
+
+    components_1 = fset(aux_graph.k_edge_subgraphs(k=1))
+    target_1 = fset([{a, b, c, d, e, f, g}, {h}, {i}])
+    assert target_1 == components_1
+
+    # Check that the directed case for k=1 agrees with SCCs
+    alt_1 = fset(nx.strongly_connected_components(G))
+    assert alt_1 == components_1
+
+    components_2 = fset(aux_graph.k_edge_subgraphs(k=2))
+    target_2 = fset([{i}, {e}, {d}, {b, c, f, g}, {h}, {a}])
+    assert target_2 == components_2
+
+    components_3 = fset(aux_graph.k_edge_subgraphs(k=3))
+    target_3 = fset([{a}, {b}, {c}, {d}, {e}, {f}, {g}, {h}, {i}])
+    assert target_3 == components_3
+
+
+def test_random_gnp_directed():
+    # seeds = [3894723670, 500186844, 267231174, 2181982262, 1116750056]
+    seeds = [21]
+    for seed in seeds:
+        G = nx.gnp_random_graph(20, 0.2, directed=True, seed=seed)
+        _check_edge_connectivity(G)
+
+
+def test_configuration_directed():
+    # seeds = [671221681, 2403749451, 124433910, 672335939, 1193127215]
+    seeds = [67]
+    for seed in seeds:
+        deg_seq = nx.random_powerlaw_tree_sequence(20, seed=seed, tries=5000)
+        G = nx.DiGraph(nx.configuration_model(deg_seq, seed=seed))
+        G.remove_edges_from(nx.selfloop_edges(G))
+        _check_edge_connectivity(G)
+
+
+def test_shell_directed():
+    # seeds = [3134027055, 4079264063, 1350769518, 1405643020, 530038094]
+    seeds = [31]
+    for seed in seeds:
+        constructor = [(12, 70, 0.8), (15, 40, 0.6)]
+        G = nx.random_shell_graph(constructor, seed=seed).to_directed()
+        _check_edge_connectivity(G)
+
+
+def test_karate_directed():
+    G = nx.karate_club_graph().to_directed()
+    _check_edge_connectivity(G)