okstra 0.108.0 → 0.110.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.kr.md +1 -1
- package/README.md +1 -1
- package/docs/kr/architecture.md +3 -3
- package/docs/kr/cli.md +2 -2
- package/docs/project-structure-overview.md +3 -3
- package/package.json +1 -1
- package/runtime/BUILD.json +2 -2
- package/runtime/prompts/profiles/_common-contract.md +1 -1
- package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
- package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
- package/runtime/python/okstra_ctl/worktree.py +14 -13
- package/runtime/python/okstra_project/__init__.py +2 -0
- package/runtime/python/okstra_project/state.py +36 -0
- package/runtime/python/okstra_vendor/__init__.py +41 -0
- package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
- package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
- package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
- package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
- package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
- package/runtime/python/okstra_vendor/graphify/build.py +107 -0
- package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
- package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
- package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
- package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
- package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
- package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
- package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
- package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
- package/runtime/python/okstra_vendor/graphify/report.py +175 -0
- package/runtime/python/okstra_vendor/graphify/security.py +203 -0
- package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
- package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
- package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
- package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
- package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
- package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
- package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
- package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
- package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
- package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
- package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
- package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
- package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
- package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
- package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
- package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/core.py +588 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/covering.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cuts.py +416 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/cycles.py +1234 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/d_separation.py +677 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dag.py +1392 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_measures.py +1095 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/distance_regular.py +272 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominance.py +142 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/dominating.py +268 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/efficiency_measures.py +167 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/euler.py +470 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/__init__.py +11 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/boykovkolmogorov.py +370 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/capacityscaling.py +407 -0
- package/runtime/python/okstra_vendor/networkx/algorithms/flow/dinitz_alg.py +238 -0
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- package/runtime/python/okstra_vendor/networkx/generators/tests/test_interval_graph.py +144 -0
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- package/runtime/python/okstra_vendor/networkx/generators/tests/test_lattice.py +264 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_line.py +316 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_mycielski.py +30 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_nonisomorphic_trees.py +82 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_clustered.py +33 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_random_graphs.py +495 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_small.py +220 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_spectral_graph_forge.py +49 -0
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- package/runtime/python/okstra_vendor/networkx/generators/tests/test_sudoku.py +92 -0
- package/runtime/python/okstra_vendor/networkx/generators/tests/test_time_series.py +64 -0
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- package/runtime/python/okstra_vendor/networkx/lazy_imports.py +188 -0
- package/runtime/python/okstra_vendor/networkx/linalg/__init__.py +13 -0
- package/runtime/python/okstra_vendor/networkx/linalg/algebraicconnectivity.py +650 -0
- package/runtime/python/okstra_vendor/networkx/linalg/attrmatrix.py +466 -0
- package/runtime/python/okstra_vendor/networkx/linalg/bethehessianmatrix.py +77 -0
- package/runtime/python/okstra_vendor/networkx/linalg/graphmatrix.py +168 -0
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- package/runtime/python/okstra_vendor/networkx/linalg/modularitymatrix.py +166 -0
- package/runtime/python/okstra_vendor/networkx/linalg/spectrum.py +186 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/__init__.py +0 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_algebraic_connectivity.py +400 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_attrmatrix.py +108 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_bethehessian.py +40 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_graphmatrix.py +275 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_laplacian.py +334 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_modularity.py +86 -0
- package/runtime/python/okstra_vendor/networkx/linalg/tests/test_spectrum.py +70 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/__init__.py +17 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/adjlist.py +330 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/edgelist.py +489 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/gexf.py +1084 -0
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- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/__init__.py +19 -0
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- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/cytoscape.py +190 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/node_link.py +261 -0
- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/__init__.py +0 -0
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- package/runtime/python/okstra_vendor/networkx/readwrite/json_graph/tests/test_node_link.py +109 -0
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import pytest
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import networkx as nx
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import networkx.algorithms.approximation as approx
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def close_cliques_example(d=12, D=300, h=24, k=2):
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"""
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Hard example from Harb, Elfarouk, Kent Quanrud, and Chandra Chekuri.
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"Faster and scalable algorithms for densest subgraph and decomposition."
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Advances in Neural Information Processing Systems 35 (2022): 26966-26979.
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"""
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Kh = nx.complete_graph(h)
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KdD = nx.complete_bipartite_graph(d, D)
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G = nx.disjoint_union_all([KdD] + [Kh for _ in range(k)])
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best_density = d * D / (d + D) # of the complete bipartite graph
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return G, best_density, set(KdD.nodes)
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@pytest.mark.parametrize("iterations", (1, 3))
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@pytest.mark.parametrize("n", range(4, 7))
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@pytest.mark.parametrize("method", ("greedy++", "fista"))
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def test_star(n, iterations, method):
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pytest.importorskip("numpy")
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G = nx.star_graph(n)
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# The densest subgraph of a star network is the entire graph.
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# The peeling algorithm would peel all the vertices with degree 1,
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# and so should discover the densest subgraph in one iteration!
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d, S = approx.densest_subgraph(G, iterations=iterations, method=method)
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assert d == pytest.approx(G.number_of_edges() / G.number_of_nodes())
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assert S == set(G) # The entire graph!
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@pytest.mark.parametrize("method", ("greedy++", "fista"))
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def test_greedy_plus_plus_complete_graph(method):
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if method == "fista":
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pytest.importorskip("numpy")
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G = nx.complete_graph(4)
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# The density of a complete graph network is the entire graph: C(4, 2)/4
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# where C(n, 2) is n*(n-1)//2. The peeling algorithm would find
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# the densest subgraph in one iteration!
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d, S = approx.densest_subgraph(G, iterations=1, method=method)
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assert d == pytest.approx(6 / 4) # The density, 4/5=0.8.
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assert S == {0, 1, 2, 3} # The entire graph!
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def test_greedy_plus_plus_close_cliques():
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G, best_density, densest_set = close_cliques_example()
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# NOTE: iterations=185 fails to ID the densest subgraph
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greedy_pp, S_pp = approx.densest_subgraph(G, iterations=186, method="greedy++")
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assert greedy_pp == pytest.approx(best_density)
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assert S_pp == densest_set
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def test_fista_close_cliques():
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pytest.importorskip("numpy")
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G, best_density, best_set = close_cliques_example()
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# NOTE: iterations=12 fails to ID the densest subgraph
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density, dense_set = approx.densest_subgraph(G, iterations=13, method="fista")
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assert density == pytest.approx(best_density)
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assert dense_set == best_set
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def bipartite_and_clique_example(d=5, D=200, k=2):
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"""
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Hard example from: Boob, Digvijay, Yu Gao, Richard Peng, Saurabh Sawlani,
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Charalampos Tsourakakis, Di Wang, and Junxing Wang. "Flowless: Extracting
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densest subgraphs without flow computations." In Proceedings of The Web
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Conference 2020, pp. 573-583. 2020.
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"""
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B = nx.complete_bipartite_graph(d, D)
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H = [nx.complete_graph(d + 2) for _ in range(k)]
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G = nx.disjoint_union_all([B] + H)
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best_density = d * D / (d + D) # of the complete bipartite graph
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correct_one_round_density = (2 * d * D + (d + 1) * (d + 2) * k) / (
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2 * d + 2 * D + 2 * k * (d + 2)
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)
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best_subgraph = set(B.nodes)
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return G, best_density, best_subgraph, correct_one_round_density
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def test_greedy_plus_plus_bipartite_and_clique():
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G, best_density, best_subgraph, correct_one_iter_density = (
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bipartite_and_clique_example()
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)
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one_round_density, S_one = approx.densest_subgraph(
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G, iterations=1, method="greedy++"
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)
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assert one_round_density == pytest.approx(correct_one_iter_density)
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assert S_one == set(G.nodes)
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ten_round_density, S_ten = approx.densest_subgraph(
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G, iterations=10, method="greedy++"
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)
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assert ten_round_density == pytest.approx(best_density)
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assert S_ten == best_subgraph
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def test_fista_bipartite_and_clique():
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pytest.importorskip("numpy")
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G, best_density, best_subgraph, _ = bipartite_and_clique_example()
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ten_round_density, S_ten = approx.densest_subgraph(G, iterations=10, method="fista")
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assert ten_round_density == pytest.approx(best_density)
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assert S_ten == best_subgraph
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def test_fista_big_dataset():
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pytest.importorskip("numpy")
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G, best_density, best_subgraph = close_cliques_example(d=30, D=2000, h=60, k=20)
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# Note: iterations=12 fails to identify densest subgraph
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density, dense_set = approx.densest_subgraph(G, iterations=13, method="fista")
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assert density == pytest.approx(best_density)
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assert dense_set == best_subgraph
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@pytest.mark.parametrize("iterations", (1, 3))
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def test_greedy_plus_plus_edgeless_cornercase(iterations):
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G = nx.Graph()
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assert approx.densest_subgraph(G, iterations=iterations, method="greedy++") == (
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0,
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set(),
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)
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G.add_nodes_from(range(4))
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assert approx.densest_subgraph(G, iterations=iterations, method="greedy++") == (
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set(),
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)
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|
+
@pytest.mark.parametrize("labels", ((1, 2, 3), ("a", "b", "c")))
|
|
142
|
+
def test_gh_8271(labels):
|
|
143
|
+
"""Test for graphs with nonstandard node labels."""
|
|
144
|
+
pytest.importorskip("numpy")
|
|
145
|
+
G = nx.complete_graph(labels)
|
|
146
|
+
assert approx.densest_subgraph(G, method="fista") == (1, set(labels))
|
|
@@ -0,0 +1,59 @@
|
|
|
1
|
+
"""Unit tests for the :mod:`networkx.algorithms.approximation.distance_measures` module."""
|
|
2
|
+
|
|
3
|
+
import pytest
|
|
4
|
+
|
|
5
|
+
import networkx as nx
|
|
6
|
+
from networkx.algorithms.approximation import diameter
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
class TestDiameter:
|
|
10
|
+
"""Unit tests for the approximate diameter function
|
|
11
|
+
:func:`~networkx.algorithms.approximation.distance_measures.diameter`.
|
|
12
|
+
"""
|
|
13
|
+
|
|
14
|
+
def test_null_graph(self):
|
|
15
|
+
"""Test empty graph."""
|
|
16
|
+
G = nx.null_graph()
|
|
17
|
+
with pytest.raises(
|
|
18
|
+
nx.NetworkXError, match="Expected non-empty NetworkX graph!"
|
|
19
|
+
):
|
|
20
|
+
diameter(G)
|
|
21
|
+
|
|
22
|
+
def test_undirected_non_connected(self):
|
|
23
|
+
"""Test an undirected disconnected graph."""
|
|
24
|
+
graph = nx.path_graph(10)
|
|
25
|
+
graph.remove_edge(3, 4)
|
|
26
|
+
with pytest.raises(nx.NetworkXError, match="Graph not connected."):
|
|
27
|
+
diameter(graph)
|
|
28
|
+
|
|
29
|
+
def test_directed_non_strongly_connected(self):
|
|
30
|
+
"""Test a directed non strongly connected graph."""
|
|
31
|
+
graph = nx.path_graph(10, create_using=nx.DiGraph())
|
|
32
|
+
with pytest.raises(nx.NetworkXError, match="DiGraph not strongly connected."):
|
|
33
|
+
diameter(graph)
|
|
34
|
+
|
|
35
|
+
def test_complete_undirected_graph(self):
|
|
36
|
+
"""Test a complete undirected graph."""
|
|
37
|
+
graph = nx.complete_graph(10)
|
|
38
|
+
assert diameter(graph) == 1
|
|
39
|
+
|
|
40
|
+
def test_complete_directed_graph(self):
|
|
41
|
+
"""Test a complete directed graph."""
|
|
42
|
+
graph = nx.complete_graph(10, create_using=nx.DiGraph())
|
|
43
|
+
assert diameter(graph) == 1
|
|
44
|
+
|
|
45
|
+
def test_undirected_path_graph(self):
|
|
46
|
+
"""Test an undirected path graph with 10 nodes."""
|
|
47
|
+
graph = nx.path_graph(10)
|
|
48
|
+
assert diameter(graph) == 9
|
|
49
|
+
|
|
50
|
+
def test_directed_path_graph(self):
|
|
51
|
+
"""Test a directed path graph with 10 nodes."""
|
|
52
|
+
graph = nx.path_graph(10).to_directed()
|
|
53
|
+
assert diameter(graph) == 9
|
|
54
|
+
|
|
55
|
+
def test_single_node(self):
|
|
56
|
+
"""Test a graph which contains just a node."""
|
|
57
|
+
graph = nx.Graph()
|
|
58
|
+
graph.add_node(1)
|
|
59
|
+
assert diameter(graph) == 0
|
package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py
ADDED
|
@@ -0,0 +1,78 @@
|
|
|
1
|
+
import pytest
|
|
2
|
+
|
|
3
|
+
import networkx as nx
|
|
4
|
+
from networkx.algorithms.approximation import (
|
|
5
|
+
min_edge_dominating_set,
|
|
6
|
+
min_weighted_dominating_set,
|
|
7
|
+
)
|
|
8
|
+
|
|
9
|
+
|
|
10
|
+
class TestMinWeightDominatingSet:
|
|
11
|
+
def test_min_weighted_dominating_set(self):
|
|
12
|
+
graph = nx.Graph()
|
|
13
|
+
graph.add_edge(1, 2)
|
|
14
|
+
graph.add_edge(1, 5)
|
|
15
|
+
graph.add_edge(2, 3)
|
|
16
|
+
graph.add_edge(2, 5)
|
|
17
|
+
graph.add_edge(3, 4)
|
|
18
|
+
graph.add_edge(3, 6)
|
|
19
|
+
graph.add_edge(5, 6)
|
|
20
|
+
|
|
21
|
+
vertices = {1, 2, 3, 4, 5, 6}
|
|
22
|
+
# due to ties, this might be hard to test tight bounds
|
|
23
|
+
dom_set = min_weighted_dominating_set(graph)
|
|
24
|
+
for vertex in vertices - dom_set:
|
|
25
|
+
neighbors = set(graph.neighbors(vertex))
|
|
26
|
+
assert len(neighbors & dom_set) > 0, "Non dominating set found!"
|
|
27
|
+
|
|
28
|
+
def test_star_graph(self):
|
|
29
|
+
"""Tests that an approximate dominating set for the star graph,
|
|
30
|
+
even when the center node does not have the smallest integer
|
|
31
|
+
label, gives just the center node.
|
|
32
|
+
|
|
33
|
+
For more information, see #1527.
|
|
34
|
+
|
|
35
|
+
"""
|
|
36
|
+
# Create a star graph in which the center node has the highest
|
|
37
|
+
# label instead of the lowest.
|
|
38
|
+
G = nx.star_graph(10)
|
|
39
|
+
G = nx.relabel_nodes(G, {0: 9, 9: 0})
|
|
40
|
+
assert min_weighted_dominating_set(G) == {9}
|
|
41
|
+
|
|
42
|
+
def test_null_graph(self):
|
|
43
|
+
"""Tests that the unique dominating set for the null graph is an empty set"""
|
|
44
|
+
G = nx.Graph()
|
|
45
|
+
assert min_weighted_dominating_set(G) == set()
|
|
46
|
+
|
|
47
|
+
def test_min_edge_dominating_set(self):
|
|
48
|
+
graph = nx.path_graph(5)
|
|
49
|
+
dom_set = min_edge_dominating_set(graph)
|
|
50
|
+
|
|
51
|
+
# this is a crappy way to test, but good enough for now.
|
|
52
|
+
for edge in graph.edges():
|
|
53
|
+
if edge in dom_set:
|
|
54
|
+
continue
|
|
55
|
+
else:
|
|
56
|
+
u, v = edge
|
|
57
|
+
found = False
|
|
58
|
+
for dom_edge in dom_set:
|
|
59
|
+
found |= u == dom_edge[0] or u == dom_edge[1]
|
|
60
|
+
assert found, "Non adjacent edge found!"
|
|
61
|
+
|
|
62
|
+
graph = nx.complete_graph(10)
|
|
63
|
+
dom_set = min_edge_dominating_set(graph)
|
|
64
|
+
|
|
65
|
+
# this is a crappy way to test, but good enough for now.
|
|
66
|
+
for edge in graph.edges():
|
|
67
|
+
if edge in dom_set:
|
|
68
|
+
continue
|
|
69
|
+
else:
|
|
70
|
+
u, v = edge
|
|
71
|
+
found = False
|
|
72
|
+
for dom_edge in dom_set:
|
|
73
|
+
found |= u == dom_edge[0] or u == dom_edge[1]
|
|
74
|
+
assert found, "Non adjacent edge found!"
|
|
75
|
+
|
|
76
|
+
graph = nx.Graph() # empty Networkx graph
|
|
77
|
+
with pytest.raises(ValueError, match="Expected non-empty NetworkX graph!"):
|
|
78
|
+
min_edge_dominating_set(graph)
|
package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py
ADDED
|
@@ -0,0 +1,303 @@
|
|
|
1
|
+
# Test for approximation to k-components algorithm
|
|
2
|
+
import pytest
|
|
3
|
+
|
|
4
|
+
import networkx as nx
|
|
5
|
+
from networkx.algorithms.approximation import k_components
|
|
6
|
+
from networkx.algorithms.approximation.kcomponents import _AntiGraph, _same
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
def build_k_number_dict(k_components):
|
|
10
|
+
k_num = {}
|
|
11
|
+
for k, comps in sorted(k_components.items()):
|
|
12
|
+
for comp in comps:
|
|
13
|
+
for node in comp:
|
|
14
|
+
k_num[node] = k
|
|
15
|
+
return k_num
|
|
16
|
+
|
|
17
|
+
|
|
18
|
+
##
|
|
19
|
+
# Some nice synthetic graphs
|
|
20
|
+
##
|
|
21
|
+
|
|
22
|
+
|
|
23
|
+
def graph_example_1():
|
|
24
|
+
G = nx.convert_node_labels_to_integers(
|
|
25
|
+
nx.grid_graph([5, 5]), label_attribute="labels"
|
|
26
|
+
)
|
|
27
|
+
rlabels = nx.get_node_attributes(G, "labels")
|
|
28
|
+
labels = {v: k for k, v in rlabels.items()}
|
|
29
|
+
|
|
30
|
+
for nodes in [
|
|
31
|
+
(labels[(0, 0)], labels[(1, 0)]),
|
|
32
|
+
(labels[(0, 4)], labels[(1, 4)]),
|
|
33
|
+
(labels[(3, 0)], labels[(4, 0)]),
|
|
34
|
+
(labels[(3, 4)], labels[(4, 4)]),
|
|
35
|
+
]:
|
|
36
|
+
new_node = G.order() + 1
|
|
37
|
+
# Petersen graph is triconnected
|
|
38
|
+
P = nx.petersen_graph()
|
|
39
|
+
G = nx.disjoint_union(G, P)
|
|
40
|
+
# Add two edges between the grid and P
|
|
41
|
+
G.add_edge(new_node + 1, nodes[0])
|
|
42
|
+
G.add_edge(new_node, nodes[1])
|
|
43
|
+
# K5 is 4-connected
|
|
44
|
+
K = nx.complete_graph(5)
|
|
45
|
+
G = nx.disjoint_union(G, K)
|
|
46
|
+
# Add three edges between P and K5
|
|
47
|
+
G.add_edge(new_node + 2, new_node + 11)
|
|
48
|
+
G.add_edge(new_node + 3, new_node + 12)
|
|
49
|
+
G.add_edge(new_node + 4, new_node + 13)
|
|
50
|
+
# Add another K5 sharing a node
|
|
51
|
+
G = nx.disjoint_union(G, K)
|
|
52
|
+
nbrs = G[new_node + 10]
|
|
53
|
+
G.remove_node(new_node + 10)
|
|
54
|
+
for nbr in nbrs:
|
|
55
|
+
G.add_edge(new_node + 17, nbr)
|
|
56
|
+
G.add_edge(new_node + 16, new_node + 5)
|
|
57
|
+
return G
|
|
58
|
+
|
|
59
|
+
|
|
60
|
+
def torrents_and_ferraro_graph():
|
|
61
|
+
G = nx.convert_node_labels_to_integers(
|
|
62
|
+
nx.grid_graph([5, 5]), label_attribute="labels"
|
|
63
|
+
)
|
|
64
|
+
rlabels = nx.get_node_attributes(G, "labels")
|
|
65
|
+
labels = {v: k for k, v in rlabels.items()}
|
|
66
|
+
|
|
67
|
+
for nodes in [(labels[(0, 4)], labels[(1, 4)]), (labels[(3, 4)], labels[(4, 4)])]:
|
|
68
|
+
new_node = G.order() + 1
|
|
69
|
+
# Petersen graph is triconnected
|
|
70
|
+
P = nx.petersen_graph()
|
|
71
|
+
G = nx.disjoint_union(G, P)
|
|
72
|
+
# Add two edges between the grid and P
|
|
73
|
+
G.add_edge(new_node + 1, nodes[0])
|
|
74
|
+
G.add_edge(new_node, nodes[1])
|
|
75
|
+
# K5 is 4-connected
|
|
76
|
+
K = nx.complete_graph(5)
|
|
77
|
+
G = nx.disjoint_union(G, K)
|
|
78
|
+
# Add three edges between P and K5
|
|
79
|
+
G.add_edge(new_node + 2, new_node + 11)
|
|
80
|
+
G.add_edge(new_node + 3, new_node + 12)
|
|
81
|
+
G.add_edge(new_node + 4, new_node + 13)
|
|
82
|
+
# Add another K5 sharing a node
|
|
83
|
+
G = nx.disjoint_union(G, K)
|
|
84
|
+
nbrs = G[new_node + 10]
|
|
85
|
+
G.remove_node(new_node + 10)
|
|
86
|
+
for nbr in nbrs:
|
|
87
|
+
G.add_edge(new_node + 17, nbr)
|
|
88
|
+
# Commenting this makes the graph not biconnected !!
|
|
89
|
+
# This stupid mistake make one reviewer very angry :P
|
|
90
|
+
G.add_edge(new_node + 16, new_node + 8)
|
|
91
|
+
|
|
92
|
+
for nodes in [(labels[(0, 0)], labels[(1, 0)]), (labels[(3, 0)], labels[(4, 0)])]:
|
|
93
|
+
new_node = G.order() + 1
|
|
94
|
+
# Petersen graph is triconnected
|
|
95
|
+
P = nx.petersen_graph()
|
|
96
|
+
G = nx.disjoint_union(G, P)
|
|
97
|
+
# Add two edges between the grid and P
|
|
98
|
+
G.add_edge(new_node + 1, nodes[0])
|
|
99
|
+
G.add_edge(new_node, nodes[1])
|
|
100
|
+
# K5 is 4-connected
|
|
101
|
+
K = nx.complete_graph(5)
|
|
102
|
+
G = nx.disjoint_union(G, K)
|
|
103
|
+
# Add three edges between P and K5
|
|
104
|
+
G.add_edge(new_node + 2, new_node + 11)
|
|
105
|
+
G.add_edge(new_node + 3, new_node + 12)
|
|
106
|
+
G.add_edge(new_node + 4, new_node + 13)
|
|
107
|
+
# Add another K5 sharing two nodes
|
|
108
|
+
G = nx.disjoint_union(G, K)
|
|
109
|
+
nbrs = G[new_node + 10]
|
|
110
|
+
G.remove_node(new_node + 10)
|
|
111
|
+
for nbr in nbrs:
|
|
112
|
+
G.add_edge(new_node + 17, nbr)
|
|
113
|
+
nbrs2 = G[new_node + 9]
|
|
114
|
+
G.remove_node(new_node + 9)
|
|
115
|
+
for nbr in nbrs2:
|
|
116
|
+
G.add_edge(new_node + 18, nbr)
|
|
117
|
+
return G
|
|
118
|
+
|
|
119
|
+
|
|
120
|
+
# Helper function
|
|
121
|
+
|
|
122
|
+
|
|
123
|
+
def _check_connectivity(G):
|
|
124
|
+
result = k_components(G)
|
|
125
|
+
for k, components in result.items():
|
|
126
|
+
if k < 3:
|
|
127
|
+
continue
|
|
128
|
+
for component in components:
|
|
129
|
+
C = G.subgraph(component)
|
|
130
|
+
K = nx.node_connectivity(C)
|
|
131
|
+
assert K >= k
|
|
132
|
+
|
|
133
|
+
|
|
134
|
+
def test_torrents_and_ferraro_graph():
|
|
135
|
+
G = torrents_and_ferraro_graph()
|
|
136
|
+
_check_connectivity(G)
|
|
137
|
+
|
|
138
|
+
|
|
139
|
+
def test_example_1():
|
|
140
|
+
G = graph_example_1()
|
|
141
|
+
_check_connectivity(G)
|
|
142
|
+
|
|
143
|
+
|
|
144
|
+
def test_karate_0():
|
|
145
|
+
G = nx.karate_club_graph()
|
|
146
|
+
_check_connectivity(G)
|
|
147
|
+
|
|
148
|
+
|
|
149
|
+
def test_karate_1():
|
|
150
|
+
karate_k_num = {
|
|
151
|
+
0: 4,
|
|
152
|
+
1: 4,
|
|
153
|
+
2: 4,
|
|
154
|
+
3: 4,
|
|
155
|
+
4: 3,
|
|
156
|
+
5: 3,
|
|
157
|
+
6: 3,
|
|
158
|
+
7: 4,
|
|
159
|
+
8: 4,
|
|
160
|
+
9: 2,
|
|
161
|
+
10: 3,
|
|
162
|
+
11: 1,
|
|
163
|
+
12: 2,
|
|
164
|
+
13: 4,
|
|
165
|
+
14: 2,
|
|
166
|
+
15: 2,
|
|
167
|
+
16: 2,
|
|
168
|
+
17: 2,
|
|
169
|
+
18: 2,
|
|
170
|
+
19: 3,
|
|
171
|
+
20: 2,
|
|
172
|
+
21: 2,
|
|
173
|
+
22: 2,
|
|
174
|
+
23: 3,
|
|
175
|
+
24: 3,
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176
|
+
25: 3,
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177
|
+
26: 2,
|
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178
|
+
27: 3,
|
|
179
|
+
28: 3,
|
|
180
|
+
29: 3,
|
|
181
|
+
30: 4,
|
|
182
|
+
31: 3,
|
|
183
|
+
32: 4,
|
|
184
|
+
33: 4,
|
|
185
|
+
}
|
|
186
|
+
approx_karate_k_num = karate_k_num.copy()
|
|
187
|
+
approx_karate_k_num[24] = 2
|
|
188
|
+
approx_karate_k_num[25] = 2
|
|
189
|
+
G = nx.karate_club_graph()
|
|
190
|
+
k_comps = k_components(G)
|
|
191
|
+
k_num = build_k_number_dict(k_comps)
|
|
192
|
+
assert k_num in (karate_k_num, approx_karate_k_num)
|
|
193
|
+
|
|
194
|
+
|
|
195
|
+
def test_example_1_detail_3_and_4():
|
|
196
|
+
G = graph_example_1()
|
|
197
|
+
result = k_components(G)
|
|
198
|
+
# In this example graph there are 8 3-components, 4 with 15 nodes
|
|
199
|
+
# and 4 with 5 nodes.
|
|
200
|
+
assert len(result[3]) == 8
|
|
201
|
+
assert len([c for c in result[3] if len(c) == 15]) == 4
|
|
202
|
+
assert len([c for c in result[3] if len(c) == 5]) == 4
|
|
203
|
+
# There are also 8 4-components all with 5 nodes.
|
|
204
|
+
assert len(result[4]) == 8
|
|
205
|
+
assert all(len(c) == 5 for c in result[4])
|
|
206
|
+
# Finally check that the k-components detected have actually node
|
|
207
|
+
# connectivity >= k.
|
|
208
|
+
for k, components in result.items():
|
|
209
|
+
if k < 3:
|
|
210
|
+
continue
|
|
211
|
+
for component in components:
|
|
212
|
+
K = nx.node_connectivity(G.subgraph(component))
|
|
213
|
+
assert K >= k
|
|
214
|
+
|
|
215
|
+
|
|
216
|
+
def test_directed():
|
|
217
|
+
with pytest.raises(nx.NetworkXNotImplemented):
|
|
218
|
+
G = nx.gnp_random_graph(10, 0.4, directed=True)
|
|
219
|
+
kc = k_components(G)
|
|
220
|
+
|
|
221
|
+
|
|
222
|
+
def test_same():
|
|
223
|
+
equal = {"A": 2, "B": 2, "C": 2}
|
|
224
|
+
slightly_different = {"A": 2, "B": 1, "C": 2}
|
|
225
|
+
different = {"A": 2, "B": 8, "C": 18}
|
|
226
|
+
assert _same(equal)
|
|
227
|
+
assert not _same(slightly_different)
|
|
228
|
+
assert _same(slightly_different, tol=1)
|
|
229
|
+
assert not _same(different)
|
|
230
|
+
assert not _same(different, tol=4)
|
|
231
|
+
|
|
232
|
+
|
|
233
|
+
class TestAntiGraph:
|
|
234
|
+
@classmethod
|
|
235
|
+
def setup_class(cls):
|
|
236
|
+
cls.Gnp = nx.gnp_random_graph(20, 0.8, seed=42)
|
|
237
|
+
cls.Anp = _AntiGraph(nx.complement(cls.Gnp))
|
|
238
|
+
cls.Gd = nx.davis_southern_women_graph()
|
|
239
|
+
cls.Ad = _AntiGraph(nx.complement(cls.Gd))
|
|
240
|
+
cls.Gk = nx.karate_club_graph()
|
|
241
|
+
cls.Ak = _AntiGraph(nx.complement(cls.Gk))
|
|
242
|
+
cls.GA = [(cls.Gnp, cls.Anp), (cls.Gd, cls.Ad), (cls.Gk, cls.Ak)]
|
|
243
|
+
|
|
244
|
+
def test_size(self):
|
|
245
|
+
for G, A in self.GA:
|
|
246
|
+
n = G.order()
|
|
247
|
+
s = len(list(G.edges())) + len(list(A.edges()))
|
|
248
|
+
assert s == (n * (n - 1)) / 2
|
|
249
|
+
|
|
250
|
+
def test_degree(self):
|
|
251
|
+
for G, A in self.GA:
|
|
252
|
+
assert sorted(G.degree()) == sorted(A.degree())
|
|
253
|
+
|
|
254
|
+
def test_core_number(self):
|
|
255
|
+
for G, A in self.GA:
|
|
256
|
+
assert nx.core_number(G) == nx.core_number(A)
|
|
257
|
+
|
|
258
|
+
def test_connected_components(self):
|
|
259
|
+
# ccs are same unless isolated nodes or any node has degree=len(G)-1
|
|
260
|
+
# graphs in self.GA avoid this problem
|
|
261
|
+
for G, A in self.GA:
|
|
262
|
+
gc = [set(c) for c in nx.connected_components(G)]
|
|
263
|
+
ac = [set(c) for c in nx.connected_components(A)]
|
|
264
|
+
for comp in ac:
|
|
265
|
+
assert comp in gc
|
|
266
|
+
|
|
267
|
+
def test_adj(self):
|
|
268
|
+
for G, A in self.GA:
|
|
269
|
+
for n, nbrs in G.adj.items():
|
|
270
|
+
a_adj = sorted((n, sorted(ad)) for n, ad in A.adj.items())
|
|
271
|
+
g_adj = sorted((n, sorted(ad)) for n, ad in G.adj.items())
|
|
272
|
+
assert a_adj == g_adj
|
|
273
|
+
|
|
274
|
+
def test_adjacency(self):
|
|
275
|
+
for G, A in self.GA:
|
|
276
|
+
a_adj = list(A.adjacency())
|
|
277
|
+
for n, nbrs in G.adjacency():
|
|
278
|
+
assert (n, set(nbrs)) in a_adj
|
|
279
|
+
|
|
280
|
+
def test_neighbors(self):
|
|
281
|
+
for G, A in self.GA:
|
|
282
|
+
node = list(G.nodes())[0]
|
|
283
|
+
assert set(G.neighbors(node)) == set(A.neighbors(node))
|
|
284
|
+
|
|
285
|
+
def test_node_not_in_graph(self):
|
|
286
|
+
for G, A in self.GA:
|
|
287
|
+
node = "non_existent_node"
|
|
288
|
+
pytest.raises(nx.NetworkXError, A.neighbors, node)
|
|
289
|
+
pytest.raises(nx.NetworkXError, G.neighbors, node)
|
|
290
|
+
|
|
291
|
+
def test_degree_thingraph(self):
|
|
292
|
+
for G, A in self.GA:
|
|
293
|
+
node = list(G.nodes())[0]
|
|
294
|
+
nodes = list(G.nodes())[1:4]
|
|
295
|
+
assert G.degree(node) == A.degree(node)
|
|
296
|
+
assert sum(d for n, d in G.degree()) == sum(d for n, d in A.degree())
|
|
297
|
+
# AntiGraph is a ThinGraph, so all the weights are 1
|
|
298
|
+
assert sum(d for n, d in A.degree()) == sum(
|
|
299
|
+
d for n, d in A.degree(weight="weight")
|
|
300
|
+
)
|
|
301
|
+
assert sum(d for n, d in G.degree(nodes)) == sum(
|
|
302
|
+
d for n, d in A.degree(nodes)
|
|
303
|
+
)
|
|
@@ -0,0 +1,94 @@
|
|
|
1
|
+
import random
|
|
2
|
+
|
|
3
|
+
import pytest
|
|
4
|
+
|
|
5
|
+
import networkx as nx
|
|
6
|
+
from networkx.algorithms.approximation import maxcut
|
|
7
|
+
|
|
8
|
+
|
|
9
|
+
@pytest.mark.parametrize(
|
|
10
|
+
"f", (nx.approximation.randomized_partitioning, nx.approximation.one_exchange)
|
|
11
|
+
)
|
|
12
|
+
@pytest.mark.parametrize("graph_constructor", (nx.DiGraph, nx.MultiGraph))
|
|
13
|
+
def test_raises_on_directed_and_multigraphs(f, graph_constructor):
|
|
14
|
+
G = graph_constructor([(0, 1), (1, 2)])
|
|
15
|
+
with pytest.raises(nx.NetworkXNotImplemented):
|
|
16
|
+
f(G)
|
|
17
|
+
|
|
18
|
+
|
|
19
|
+
def _is_valid_cut(G, set1, set2):
|
|
20
|
+
union = set1.union(set2)
|
|
21
|
+
assert union == set(G.nodes)
|
|
22
|
+
assert len(set1) + len(set2) == G.number_of_nodes()
|
|
23
|
+
|
|
24
|
+
|
|
25
|
+
def _cut_is_locally_optimal(G, cut_size, set1):
|
|
26
|
+
# test if cut can be locally improved
|
|
27
|
+
for i, node in enumerate(set1):
|
|
28
|
+
cut_size_without_node = nx.algorithms.cut_size(
|
|
29
|
+
G, set1 - {node}, weight="weight"
|
|
30
|
+
)
|
|
31
|
+
assert cut_size_without_node <= cut_size
|
|
32
|
+
|
|
33
|
+
|
|
34
|
+
def test_random_partitioning():
|
|
35
|
+
G = nx.complete_graph(5)
|
|
36
|
+
_, (set1, set2) = maxcut.randomized_partitioning(G, seed=5)
|
|
37
|
+
_is_valid_cut(G, set1, set2)
|
|
38
|
+
|
|
39
|
+
|
|
40
|
+
def test_random_partitioning_all_to_one():
|
|
41
|
+
G = nx.complete_graph(5)
|
|
42
|
+
_, (set1, set2) = maxcut.randomized_partitioning(G, p=1)
|
|
43
|
+
_is_valid_cut(G, set1, set2)
|
|
44
|
+
assert len(set1) == G.number_of_nodes()
|
|
45
|
+
assert len(set2) == 0
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
def test_one_exchange_basic():
|
|
49
|
+
G = nx.complete_graph(5)
|
|
50
|
+
random.seed(5)
|
|
51
|
+
for u, v, w in G.edges(data=True):
|
|
52
|
+
w["weight"] = random.randrange(-100, 100, 1) / 10
|
|
53
|
+
|
|
54
|
+
initial_cut = set(random.sample(sorted(G.nodes()), k=5))
|
|
55
|
+
cut_size, (set1, set2) = maxcut.one_exchange(
|
|
56
|
+
G, initial_cut, weight="weight", seed=5
|
|
57
|
+
)
|
|
58
|
+
|
|
59
|
+
_is_valid_cut(G, set1, set2)
|
|
60
|
+
_cut_is_locally_optimal(G, cut_size, set1)
|
|
61
|
+
|
|
62
|
+
|
|
63
|
+
def test_one_exchange_optimal():
|
|
64
|
+
# Greedy one exchange should find the optimal solution for this graph (14)
|
|
65
|
+
G = nx.Graph()
|
|
66
|
+
G.add_edge(1, 2, weight=3)
|
|
67
|
+
G.add_edge(1, 3, weight=3)
|
|
68
|
+
G.add_edge(1, 4, weight=3)
|
|
69
|
+
G.add_edge(1, 5, weight=3)
|
|
70
|
+
G.add_edge(2, 3, weight=5)
|
|
71
|
+
|
|
72
|
+
cut_size, (set1, set2) = maxcut.one_exchange(G, weight="weight", seed=5)
|
|
73
|
+
|
|
74
|
+
_is_valid_cut(G, set1, set2)
|
|
75
|
+
_cut_is_locally_optimal(G, cut_size, set1)
|
|
76
|
+
# check global optimality
|
|
77
|
+
assert cut_size == 14
|
|
78
|
+
|
|
79
|
+
|
|
80
|
+
def test_negative_weights():
|
|
81
|
+
G = nx.complete_graph(5)
|
|
82
|
+
random.seed(5)
|
|
83
|
+
for u, v, w in G.edges(data=True):
|
|
84
|
+
w["weight"] = -1 * random.random()
|
|
85
|
+
|
|
86
|
+
initial_cut = set(random.sample(sorted(G.nodes()), k=5))
|
|
87
|
+
cut_size, (set1, set2) = maxcut.one_exchange(G, initial_cut, weight="weight")
|
|
88
|
+
|
|
89
|
+
# make sure it is a valid cut
|
|
90
|
+
_is_valid_cut(G, set1, set2)
|
|
91
|
+
# check local optimality
|
|
92
|
+
_cut_is_locally_optimal(G, cut_size, set1)
|
|
93
|
+
# test that all nodes are in the same partition
|
|
94
|
+
assert len(set1) == len(G.nodes) or len(set2) == len(G.nodes)
|