okstra 0.108.0 → 0.110.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (648) hide show
  1. package/README.kr.md +1 -1
  2. package/README.md +1 -1
  3. package/docs/kr/architecture.md +3 -3
  4. package/docs/kr/cli.md +2 -2
  5. package/docs/project-structure-overview.md +3 -3
  6. package/package.json +1 -1
  7. package/runtime/BUILD.json +2 -2
  8. package/runtime/prompts/profiles/_common-contract.md +1 -1
  9. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  10. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  11. package/runtime/python/okstra_ctl/worktree.py +14 -13
  12. package/runtime/python/okstra_project/__init__.py +2 -0
  13. package/runtime/python/okstra_project/state.py +36 -0
  14. package/runtime/python/okstra_vendor/__init__.py +41 -0
  15. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  16. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  17. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  18. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  19. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  20. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  21. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  22. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  23. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  24. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  25. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  26. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  27. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  28. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  29. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  30. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  31. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  41. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  42. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  43. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  44. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  45. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  46. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  47. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  236. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
  237. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
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@@ -0,0 +1,105 @@
1
+ """Provides a function for computing the extendability of a graph which is
2
+ undirected, simple, connected and bipartite and contains at least one perfect matching."""
3
+
4
+ import networkx as nx
5
+ from networkx.utils import not_implemented_for
6
+
7
+ __all__ = ["maximal_extendability"]
8
+
9
+
10
+ @not_implemented_for("directed")
11
+ @not_implemented_for("multigraph")
12
+ @nx._dispatchable
13
+ def maximal_extendability(G):
14
+ """Computes the extendability of a graph.
15
+
16
+ The extendability of a graph is defined as the maximum $k$ for which `G`
17
+ is $k$-extendable. Graph `G` is $k$-extendable if and only if `G` has a
18
+ perfect matching and every set of $k$ independent edges can be extended
19
+ to a perfect matching in `G`.
20
+
21
+ Parameters
22
+ ----------
23
+ G : NetworkX Graph
24
+ A fully-connected bipartite graph without self-loops
25
+
26
+ Returns
27
+ -------
28
+ extendability : int
29
+
30
+ Raises
31
+ ------
32
+ NetworkXError
33
+ If the graph `G` is disconnected.
34
+ If the graph `G` is not bipartite.
35
+ If the graph `G` does not contain a perfect matching.
36
+ If the residual graph of `G` is not strongly connected.
37
+
38
+ Notes
39
+ -----
40
+ Definition:
41
+ Let `G` be a simple, connected, undirected and bipartite graph with a perfect
42
+ matching M and bipartition (U,V). The residual graph of `G`, denoted by $G_M$,
43
+ is the graph obtained from G by directing the edges of M from V to U and the
44
+ edges that do not belong to M from U to V.
45
+
46
+ Lemma [1]_ :
47
+ Let M be a perfect matching of `G`. `G` is $k$-extendable if and only if its residual
48
+ graph $G_M$ is strongly connected and there are $k$ vertex-disjoint directed
49
+ paths between every vertex of U and every vertex of V.
50
+
51
+ Assuming that input graph `G` is undirected, simple, connected, bipartite and contains
52
+ a perfect matching M, this function constructs the residual graph $G_M$ of G and
53
+ returns the minimum value among the maximum vertex-disjoint directed paths between
54
+ every vertex of U and every vertex of V in $G_M$. By combining the definitions
55
+ and the lemma, this value represents the extendability of the graph `G`.
56
+
57
+ Time complexity O($n^3$ $m^2$)) where $n$ is the number of vertices
58
+ and $m$ is the number of edges.
59
+
60
+ References
61
+ ----------
62
+ .. [1] "A polynomial algorithm for the extendability problem in bipartite graphs",
63
+ J. Lakhal, L. Litzler, Information Processing Letters, 1998.
64
+ .. [2] "On n-extendible graphs", M. D. Plummer, Discrete Mathematics, 31:201–210, 1980
65
+ https://doi.org/10.1016/0012-365X(80)90037-0
66
+
67
+ """
68
+ if not nx.is_connected(G):
69
+ raise nx.NetworkXError("Graph G is not connected")
70
+
71
+ if not nx.bipartite.is_bipartite(G):
72
+ raise nx.NetworkXError("Graph G is not bipartite")
73
+
74
+ U, V = nx.bipartite.sets(G)
75
+
76
+ maximum_matching = nx.bipartite.hopcroft_karp_matching(G)
77
+
78
+ if not nx.is_perfect_matching(G, maximum_matching):
79
+ raise nx.NetworkXError("Graph G does not contain a perfect matching")
80
+
81
+ # list of edges in perfect matching, directed from V to U
82
+ pm = [(node, maximum_matching[node]) for node in V & maximum_matching.keys()]
83
+
84
+ # Direct all the edges of G, from V to U if in matching, else from U to V
85
+ directed_edges = [
86
+ (x, y) if (x in V and (x, y) in pm) or (x in U and (y, x) not in pm) else (y, x)
87
+ for x, y in G.edges
88
+ ]
89
+
90
+ # Construct the residual graph of G
91
+ residual_G = nx.DiGraph()
92
+ residual_G.add_nodes_from(G)
93
+ residual_G.add_edges_from(directed_edges)
94
+
95
+ if not nx.is_strongly_connected(residual_G):
96
+ raise nx.NetworkXError("The residual graph of G is not strongly connected")
97
+
98
+ # For node-pairs between V & U, keep min of max number of node-disjoint paths
99
+ # Variable $k$ stands for the extendability of graph G
100
+ k = float("inf")
101
+ for u in U:
102
+ for v in V:
103
+ num_paths = sum(1 for _ in nx.node_disjoint_paths(residual_G, u, v))
104
+ k = k if k < num_paths else num_paths
105
+ return k
@@ -0,0 +1,603 @@
1
+ """
2
+ Generators and functions for bipartite graphs.
3
+ """
4
+
5
+ import math
6
+ import numbers
7
+ from functools import reduce
8
+
9
+ import networkx as nx
10
+ from networkx.utils import nodes_or_number, py_random_state
11
+
12
+ __all__ = [
13
+ "configuration_model",
14
+ "havel_hakimi_graph",
15
+ "reverse_havel_hakimi_graph",
16
+ "alternating_havel_hakimi_graph",
17
+ "preferential_attachment_graph",
18
+ "random_graph",
19
+ "gnmk_random_graph",
20
+ "complete_bipartite_graph",
21
+ ]
22
+
23
+
24
+ @nx._dispatchable(graphs=None, returns_graph=True)
25
+ @nodes_or_number([0, 1])
26
+ def complete_bipartite_graph(n1, n2, create_using=None):
27
+ """Returns the complete bipartite graph `K_{n_1,n_2}`.
28
+
29
+ The graph is composed of two partitions with nodes 0 to (n1 - 1)
30
+ in the first and nodes n1 to (n1 + n2 - 1) in the second.
31
+ Each node in the first is connected to each node in the second.
32
+
33
+ Parameters
34
+ ----------
35
+ n1, n2 : integer or iterable container of nodes
36
+ If integers, nodes are from `range(n1)` and `range(n1, n1 + n2)`.
37
+ If a container, the elements are the nodes.
38
+ create_using : NetworkX graph instance, (default: nx.Graph)
39
+ Return graph of this type.
40
+
41
+ Notes
42
+ -----
43
+ Nodes are the integers 0 to `n1 + n2 - 1` unless either n1 or n2 are
44
+ containers of nodes. If only one of n1 or n2 are integers, that
45
+ integer is replaced by `range` of that integer.
46
+
47
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
48
+ to indicate which bipartite set the node belongs to.
49
+
50
+ This function is not imported in the main namespace.
51
+ To use it use nx.bipartite.complete_bipartite_graph
52
+ """
53
+ G = nx.empty_graph(0, create_using)
54
+ if G.is_directed():
55
+ raise nx.NetworkXError("Directed Graph not supported")
56
+
57
+ n1, top = n1
58
+ n2, bottom = n2
59
+ if isinstance(n1, numbers.Integral) and isinstance(n2, numbers.Integral):
60
+ bottom = [n1 + i for i in bottom]
61
+ G.add_nodes_from(top, bipartite=0)
62
+ G.add_nodes_from(bottom, bipartite=1)
63
+ if len(G) != len(top) + len(bottom):
64
+ raise nx.NetworkXError("Inputs n1 and n2 must contain distinct nodes")
65
+ G.add_edges_from((u, v) for u in top for v in bottom)
66
+ G.graph["name"] = f"complete_bipartite_graph({len(top)}, {len(bottom)})"
67
+ return G
68
+
69
+
70
+ @py_random_state(3)
71
+ @nx._dispatchable(name="bipartite_configuration_model", graphs=None, returns_graph=True)
72
+ def configuration_model(aseq, bseq, create_using=None, seed=None):
73
+ """Returns a random bipartite graph from two given degree sequences.
74
+
75
+ Parameters
76
+ ----------
77
+ aseq : list
78
+ Degree sequence for node set A.
79
+ bseq : list
80
+ Degree sequence for node set B.
81
+ create_using : NetworkX graph instance, optional
82
+ Return graph of this type.
83
+ seed : integer, random_state, or None (default)
84
+ Indicator of random number generation state.
85
+ See :ref:`Randomness<randomness>`.
86
+
87
+ The graph is composed of two partitions. Set A has nodes 0 to
88
+ (len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
89
+ Nodes from set A are connected to nodes in set B by choosing
90
+ randomly from the possible free stubs, one in A and one in B.
91
+
92
+ Notes
93
+ -----
94
+ The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
95
+ If no graph type is specified use MultiGraph with parallel edges.
96
+ If you want a graph with no parallel edges use create_using=Graph()
97
+ but then the resulting degree sequences might not be exact.
98
+
99
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
100
+ to indicate which bipartite set the node belongs to.
101
+
102
+ This function is not imported in the main namespace.
103
+ To use it use nx.bipartite.configuration_model
104
+ """
105
+ G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
106
+ if G.is_directed():
107
+ raise nx.NetworkXError("Directed Graph not supported")
108
+
109
+ # length and sum of each sequence
110
+ lena = len(aseq)
111
+ lenb = len(bseq)
112
+ suma = sum(aseq)
113
+ sumb = sum(bseq)
114
+
115
+ if not suma == sumb:
116
+ raise nx.NetworkXError(
117
+ f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
118
+ )
119
+
120
+ G = _add_nodes_with_bipartite_label(G, lena, lenb)
121
+
122
+ if len(aseq) == 0 or max(aseq) == 0:
123
+ return G # done if no edges
124
+
125
+ # build lists of degree-repeated vertex numbers
126
+ stubs = [[v] * aseq[v] for v in range(lena)]
127
+ astubs = [x for subseq in stubs for x in subseq]
128
+
129
+ stubs = [[v] * bseq[v - lena] for v in range(lena, lena + lenb)]
130
+ bstubs = [x for subseq in stubs for x in subseq]
131
+
132
+ # shuffle lists
133
+ seed.shuffle(astubs)
134
+ seed.shuffle(bstubs)
135
+
136
+ G.add_edges_from([astubs[i], bstubs[i]] for i in range(suma))
137
+
138
+ G.name = "bipartite_configuration_model"
139
+ return G
140
+
141
+
142
+ @nx._dispatchable(name="bipartite_havel_hakimi_graph", graphs=None, returns_graph=True)
143
+ def havel_hakimi_graph(aseq, bseq, create_using=None):
144
+ """Returns a bipartite graph from two given degree sequences using a
145
+ Havel-Hakimi style construction.
146
+
147
+ The graph is composed of two partitions. Set A has nodes 0 to
148
+ (len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
149
+ Nodes from the set A are connected to nodes in the set B by
150
+ connecting the highest degree nodes in set A to the highest degree
151
+ nodes in set B until all stubs are connected.
152
+
153
+ Parameters
154
+ ----------
155
+ aseq : list
156
+ Degree sequence for node set A.
157
+ bseq : list
158
+ Degree sequence for node set B.
159
+ create_using : NetworkX graph instance, optional
160
+ Return graph of this type.
161
+
162
+ Notes
163
+ -----
164
+ The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
165
+ If no graph type is specified use MultiGraph with parallel edges.
166
+ If you want a graph with no parallel edges use create_using=Graph()
167
+ but then the resulting degree sequences might not be exact.
168
+
169
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
170
+ to indicate which bipartite set the node belongs to.
171
+
172
+ This function is not imported in the main namespace.
173
+ To use it use nx.bipartite.havel_hakimi_graph
174
+ """
175
+ G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
176
+ if G.is_directed():
177
+ raise nx.NetworkXError("Directed Graph not supported")
178
+
179
+ # length of the each sequence
180
+ naseq = len(aseq)
181
+ nbseq = len(bseq)
182
+
183
+ suma = sum(aseq)
184
+ sumb = sum(bseq)
185
+
186
+ if not suma == sumb:
187
+ raise nx.NetworkXError(
188
+ f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
189
+ )
190
+
191
+ G = _add_nodes_with_bipartite_label(G, naseq, nbseq)
192
+
193
+ if len(aseq) == 0 or max(aseq) == 0:
194
+ return G # done if no edges
195
+
196
+ # build list of degree-repeated vertex numbers
197
+ astubs = [[aseq[v], v] for v in range(naseq)]
198
+ bstubs = [[bseq[v - naseq], v] for v in range(naseq, naseq + nbseq)]
199
+ astubs.sort()
200
+ while astubs:
201
+ (degree, u) = astubs.pop() # take of largest degree node in the a set
202
+ if degree == 0:
203
+ break # done, all are zero
204
+ # connect the source to largest degree nodes in the b set
205
+ bstubs.sort()
206
+ for target in bstubs[-degree:]:
207
+ v = target[1]
208
+ G.add_edge(u, v)
209
+ target[0] -= 1 # note this updates bstubs too.
210
+ if target[0] == 0:
211
+ bstubs.remove(target)
212
+
213
+ G.name = "bipartite_havel_hakimi_graph"
214
+ return G
215
+
216
+
217
+ @nx._dispatchable(graphs=None, returns_graph=True)
218
+ def reverse_havel_hakimi_graph(aseq, bseq, create_using=None):
219
+ """Returns a bipartite graph from two given degree sequences using a
220
+ Havel-Hakimi style construction.
221
+
222
+ The graph is composed of two partitions. Set A has nodes 0 to
223
+ (len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
224
+ Nodes from set A are connected to nodes in the set B by connecting
225
+ the highest degree nodes in set A to the lowest degree nodes in
226
+ set B until all stubs are connected.
227
+
228
+ Parameters
229
+ ----------
230
+ aseq : list
231
+ Degree sequence for node set A.
232
+ bseq : list
233
+ Degree sequence for node set B.
234
+ create_using : NetworkX graph instance, optional
235
+ Return graph of this type.
236
+
237
+ Notes
238
+ -----
239
+ The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
240
+ If no graph type is specified use MultiGraph with parallel edges.
241
+ If you want a graph with no parallel edges use create_using=Graph()
242
+ but then the resulting degree sequences might not be exact.
243
+
244
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
245
+ to indicate which bipartite set the node belongs to.
246
+
247
+ This function is not imported in the main namespace.
248
+ To use it use nx.bipartite.reverse_havel_hakimi_graph
249
+ """
250
+ G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
251
+ if G.is_directed():
252
+ raise nx.NetworkXError("Directed Graph not supported")
253
+
254
+ # length of the each sequence
255
+ lena = len(aseq)
256
+ lenb = len(bseq)
257
+ suma = sum(aseq)
258
+ sumb = sum(bseq)
259
+
260
+ if not suma == sumb:
261
+ raise nx.NetworkXError(
262
+ f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
263
+ )
264
+
265
+ G = _add_nodes_with_bipartite_label(G, lena, lenb)
266
+
267
+ if len(aseq) == 0 or max(aseq) == 0:
268
+ return G # done if no edges
269
+
270
+ # build list of degree-repeated vertex numbers
271
+ astubs = [[aseq[v], v] for v in range(lena)]
272
+ bstubs = [[bseq[v - lena], v] for v in range(lena, lena + lenb)]
273
+ astubs.sort()
274
+ bstubs.sort()
275
+ while astubs:
276
+ (degree, u) = astubs.pop() # take of largest degree node in the a set
277
+ if degree == 0:
278
+ break # done, all are zero
279
+ # connect the source to the smallest degree nodes in the b set
280
+ for target in bstubs[0:degree]:
281
+ v = target[1]
282
+ G.add_edge(u, v)
283
+ target[0] -= 1 # note this updates bstubs too.
284
+ if target[0] == 0:
285
+ bstubs.remove(target)
286
+
287
+ G.name = "bipartite_reverse_havel_hakimi_graph"
288
+ return G
289
+
290
+
291
+ @nx._dispatchable(graphs=None, returns_graph=True)
292
+ def alternating_havel_hakimi_graph(aseq, bseq, create_using=None):
293
+ """Returns a bipartite graph from two given degree sequences using
294
+ an alternating Havel-Hakimi style construction.
295
+
296
+ The graph is composed of two partitions. Set A has nodes 0 to
297
+ (len(aseq) - 1) and set B has nodes len(aseq) to (len(bseq) - 1).
298
+ Nodes from the set A are connected to nodes in the set B by
299
+ connecting the highest degree nodes in set A to alternatively the
300
+ highest and the lowest degree nodes in set B until all stubs are
301
+ connected.
302
+
303
+ Parameters
304
+ ----------
305
+ aseq : list
306
+ Degree sequence for node set A.
307
+ bseq : list
308
+ Degree sequence for node set B.
309
+ create_using : NetworkX graph instance, optional
310
+ Return graph of this type.
311
+
312
+ Notes
313
+ -----
314
+ The sum of the two sequences must be equal: sum(aseq)=sum(bseq)
315
+ If no graph type is specified use MultiGraph with parallel edges.
316
+ If you want a graph with no parallel edges use create_using=Graph()
317
+ but then the resulting degree sequences might not be exact.
318
+
319
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
320
+ to indicate which bipartite set the node belongs to.
321
+
322
+ This function is not imported in the main namespace.
323
+ To use it use nx.bipartite.alternating_havel_hakimi_graph
324
+ """
325
+ G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
326
+ if G.is_directed():
327
+ raise nx.NetworkXError("Directed Graph not supported")
328
+
329
+ # length of the each sequence
330
+ naseq = len(aseq)
331
+ nbseq = len(bseq)
332
+ suma = sum(aseq)
333
+ sumb = sum(bseq)
334
+
335
+ if not suma == sumb:
336
+ raise nx.NetworkXError(
337
+ f"invalid degree sequences, sum(aseq)!=sum(bseq),{suma},{sumb}"
338
+ )
339
+
340
+ G = _add_nodes_with_bipartite_label(G, naseq, nbseq)
341
+
342
+ if len(aseq) == 0 or max(aseq) == 0:
343
+ return G # done if no edges
344
+ # build list of degree-repeated vertex numbers
345
+ astubs = [[aseq[v], v] for v in range(naseq)]
346
+ bstubs = [[bseq[v - naseq], v] for v in range(naseq, naseq + nbseq)]
347
+ while astubs:
348
+ astubs.sort()
349
+ (degree, u) = astubs.pop() # take of largest degree node in the a set
350
+ if degree == 0:
351
+ break # done, all are zero
352
+ bstubs.sort()
353
+ small = bstubs[0 : degree // 2] # add these low degree targets
354
+ large = bstubs[(-degree + degree // 2) :] # now high degree targets
355
+ stubs = [x for z in zip(large, small) for x in z] # combine, sorry
356
+ if len(stubs) < len(small) + len(large): # check for zip truncation
357
+ stubs.append(large.pop())
358
+ for target in stubs:
359
+ v = target[1]
360
+ G.add_edge(u, v)
361
+ target[0] -= 1 # note this updates bstubs too.
362
+ if target[0] == 0:
363
+ bstubs.remove(target)
364
+
365
+ G.name = "bipartite_alternating_havel_hakimi_graph"
366
+ return G
367
+
368
+
369
+ @py_random_state(3)
370
+ @nx._dispatchable(graphs=None, returns_graph=True)
371
+ def preferential_attachment_graph(aseq, p, create_using=None, seed=None):
372
+ """Create a bipartite graph with a preferential attachment model from
373
+ a given single degree sequence.
374
+
375
+ The graph is composed of two partitions. Set A has nodes 0 to
376
+ (len(aseq) - 1) and set B has nodes starting with node len(aseq).
377
+ The number of nodes in set B is random.
378
+
379
+ Parameters
380
+ ----------
381
+ aseq : list
382
+ Degree sequence for node set A.
383
+ p : float
384
+ Probability that a new bottom node is added.
385
+ create_using : NetworkX graph instance, optional
386
+ Return graph of this type.
387
+ seed : integer, random_state, or None (default)
388
+ Indicator of random number generation state.
389
+ See :ref:`Randomness<randomness>`.
390
+
391
+ References
392
+ ----------
393
+ .. [1] Guillaume, J.L. and Latapy, M.,
394
+ Bipartite graphs as models of complex networks.
395
+ Physica A: Statistical Mechanics and its Applications,
396
+ 2006, 371(2), pp.795-813.
397
+ .. [2] Jean-Loup Guillaume and Matthieu Latapy,
398
+ Bipartite structure of all complex networks,
399
+ Inf. Process. Lett. 90, 2004, pg. 215-221
400
+ https://doi.org/10.1016/j.ipl.2004.03.007
401
+
402
+ Notes
403
+ -----
404
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
405
+ to indicate which bipartite set the node belongs to.
406
+
407
+ This function is not imported in the main namespace.
408
+ To use it use nx.bipartite.preferential_attachment_graph
409
+ """
410
+ G = nx.empty_graph(0, create_using, default=nx.MultiGraph)
411
+ if G.is_directed():
412
+ raise nx.NetworkXError("Directed Graph not supported")
413
+
414
+ if p > 1:
415
+ raise nx.NetworkXError(f"probability {p} > 1")
416
+
417
+ naseq = len(aseq)
418
+ G = _add_nodes_with_bipartite_label(G, naseq, 0)
419
+ vv = [[v] * aseq[v] for v in range(naseq)]
420
+ while vv:
421
+ while vv[0]:
422
+ source = vv[0][0]
423
+ vv[0].remove(source)
424
+ if seed.random() < p or len(G) == naseq:
425
+ target = len(G)
426
+ G.add_node(target, bipartite=1)
427
+ G.add_edge(source, target)
428
+ else:
429
+ bb = [[b] * G.degree(b) for b in range(naseq, len(G))]
430
+ # flatten the list of lists into a list.
431
+ bbstubs = reduce(lambda x, y: x + y, bb)
432
+ # choose preferentially a bottom node.
433
+ target = seed.choice(bbstubs)
434
+ G.add_node(target, bipartite=1)
435
+ G.add_edge(source, target)
436
+ vv.remove(vv[0])
437
+ G.name = "bipartite_preferential_attachment_model"
438
+ return G
439
+
440
+
441
+ @py_random_state(3)
442
+ @nx._dispatchable(graphs=None, returns_graph=True)
443
+ def random_graph(n, m, p, seed=None, directed=False):
444
+ """Returns a bipartite random graph.
445
+
446
+ This is a bipartite version of the binomial (Erdős-Rényi) graph.
447
+ The graph is composed of two partitions. Set A has nodes 0 to
448
+ (n - 1) and set B has nodes n to (n + m - 1).
449
+
450
+ Parameters
451
+ ----------
452
+ n : int
453
+ The number of nodes in the first bipartite set.
454
+ m : int
455
+ The number of nodes in the second bipartite set.
456
+ p : float
457
+ Probability for edge creation.
458
+ seed : integer, random_state, or None (default)
459
+ Indicator of random number generation state.
460
+ See :ref:`Randomness<randomness>`.
461
+ directed : bool, optional (default=False)
462
+ If True return a directed graph
463
+
464
+ Notes
465
+ -----
466
+ The bipartite random graph algorithm chooses each of the n*m (undirected)
467
+ or 2*nm (directed) possible edges with probability p.
468
+
469
+ This algorithm is $O(n+m)$ where $m$ is the expected number of edges.
470
+
471
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
472
+ to indicate which bipartite set the node belongs to.
473
+
474
+ This function is not imported in the main namespace.
475
+ To use it use nx.bipartite.random_graph
476
+
477
+ See Also
478
+ --------
479
+ gnp_random_graph, configuration_model
480
+
481
+ References
482
+ ----------
483
+ .. [1] Vladimir Batagelj and Ulrik Brandes,
484
+ "Efficient generation of large random networks",
485
+ Phys. Rev. E, 71, 036113, 2005.
486
+ """
487
+ G = nx.Graph()
488
+ G = _add_nodes_with_bipartite_label(G, n, m)
489
+ if directed:
490
+ G = nx.DiGraph(G)
491
+ G.name = f"fast_gnp_random_graph({n},{m},{p})"
492
+
493
+ if p <= 0:
494
+ return G
495
+ if p >= 1:
496
+ return nx.complete_bipartite_graph(n, m)
497
+
498
+ lp = math.log(1.0 - p)
499
+
500
+ v = 0
501
+ w = -1
502
+ while v < n:
503
+ lr = math.log(1.0 - seed.random())
504
+ w = w + 1 + int(lr / lp)
505
+ while w >= m and v < n:
506
+ w = w - m
507
+ v = v + 1
508
+ if v < n:
509
+ G.add_edge(v, n + w)
510
+
511
+ if directed:
512
+ # use the same algorithm to
513
+ # add edges from the "m" to "n" set
514
+ v = 0
515
+ w = -1
516
+ while v < n:
517
+ lr = math.log(1.0 - seed.random())
518
+ w = w + 1 + int(lr / lp)
519
+ while w >= m and v < n:
520
+ w = w - m
521
+ v = v + 1
522
+ if v < n:
523
+ G.add_edge(n + w, v)
524
+
525
+ return G
526
+
527
+
528
+ @py_random_state(3)
529
+ @nx._dispatchable(graphs=None, returns_graph=True)
530
+ def gnmk_random_graph(n, m, k, seed=None, directed=False):
531
+ """Returns a random bipartite graph G_{n,m,k}.
532
+
533
+ Produces a bipartite graph chosen randomly out of the set of all graphs
534
+ with n top nodes, m bottom nodes, and k edges.
535
+ The graph is composed of two sets of nodes.
536
+ Set A has nodes 0 to (n - 1) and set B has nodes n to (n + m - 1).
537
+
538
+ Parameters
539
+ ----------
540
+ n : int
541
+ The number of nodes in the first bipartite set.
542
+ m : int
543
+ The number of nodes in the second bipartite set.
544
+ k : int
545
+ The number of edges
546
+ seed : integer, random_state, or None (default)
547
+ Indicator of random number generation state.
548
+ See :ref:`Randomness<randomness>`.
549
+ directed : bool, optional (default=False)
550
+ If True return a directed graph
551
+
552
+ Examples
553
+ --------
554
+ >>> G = nx.bipartite.gnmk_random_graph(10, 20, 50)
555
+
556
+ See Also
557
+ --------
558
+ gnm_random_graph
559
+
560
+ Notes
561
+ -----
562
+ If k > m * n then a complete bipartite graph is returned.
563
+
564
+ This graph is a bipartite version of the `G_{nm}` random graph model.
565
+
566
+ The nodes are assigned the attribute 'bipartite' with the value 0 or 1
567
+ to indicate which bipartite set the node belongs to.
568
+
569
+ This function is not imported in the main namespace.
570
+ To use it use nx.bipartite.gnmk_random_graph
571
+ """
572
+ G = nx.Graph()
573
+ G = _add_nodes_with_bipartite_label(G, n, m)
574
+ if directed:
575
+ G = nx.DiGraph(G)
576
+ G.name = f"bipartite_gnm_random_graph({n},{m},{k})"
577
+ if n == 1 or m == 1:
578
+ return G
579
+ max_edges = n * m # max_edges for bipartite networks
580
+ if k >= max_edges: # Maybe we should raise an exception here
581
+ return nx.complete_bipartite_graph(n, m, create_using=G)
582
+
583
+ top = [n for n, d in G.nodes(data=True) if d["bipartite"] == 0]
584
+ bottom = list(set(G) - set(top))
585
+ edge_count = 0
586
+ while edge_count < k:
587
+ # generate random edge,u,v
588
+ u = seed.choice(top)
589
+ v = seed.choice(bottom)
590
+ if v in G[u]:
591
+ continue
592
+ else:
593
+ G.add_edge(u, v)
594
+ edge_count += 1
595
+ return G
596
+
597
+
598
+ def _add_nodes_with_bipartite_label(G, lena, lenb):
599
+ G.add_nodes_from(range(lena + lenb))
600
+ b = dict(zip(range(lena), [0] * lena))
601
+ b.update(dict(zip(range(lena, lena + lenb), [1] * lenb)))
602
+ nx.set_node_attributes(G, b, "bipartite")
603
+ return G