okstra 0.108.0 → 0.110.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (648) hide show
  1. package/README.kr.md +1 -1
  2. package/README.md +1 -1
  3. package/docs/kr/architecture.md +3 -3
  4. package/docs/kr/cli.md +2 -2
  5. package/docs/project-structure-overview.md +3 -3
  6. package/package.json +1 -1
  7. package/runtime/BUILD.json +2 -2
  8. package/runtime/prompts/profiles/_common-contract.md +1 -1
  9. package/runtime/python/okstra_ctl/graphify_cmd.py +225 -0
  10. package/runtime/python/okstra_ctl/resolve_task_key.py +15 -9
  11. package/runtime/python/okstra_ctl/worktree.py +14 -13
  12. package/runtime/python/okstra_project/__init__.py +2 -0
  13. package/runtime/python/okstra_project/state.py +36 -0
  14. package/runtime/python/okstra_vendor/__init__.py +41 -0
  15. package/runtime/python/okstra_vendor/graphify/.vendored-version +1 -0
  16. package/runtime/python/okstra_vendor/graphify/__init__.py +28 -0
  17. package/runtime/python/okstra_vendor/graphify/__main__.py +1371 -0
  18. package/runtime/python/okstra_vendor/graphify/analyze.py +540 -0
  19. package/runtime/python/okstra_vendor/graphify/benchmark.py +129 -0
  20. package/runtime/python/okstra_vendor/graphify/build.py +107 -0
  21. package/runtime/python/okstra_vendor/graphify/cache.py +169 -0
  22. package/runtime/python/okstra_vendor/graphify/cluster.py +137 -0
  23. package/runtime/python/okstra_vendor/graphify/detect.py +510 -0
  24. package/runtime/python/okstra_vendor/graphify/export.py +1014 -0
  25. package/runtime/python/okstra_vendor/graphify/extract.py +3277 -0
  26. package/runtime/python/okstra_vendor/graphify/hooks.py +220 -0
  27. package/runtime/python/okstra_vendor/graphify/ingest.py +297 -0
  28. package/runtime/python/okstra_vendor/graphify/manifest.py +4 -0
  29. package/runtime/python/okstra_vendor/graphify/report.py +175 -0
  30. package/runtime/python/okstra_vendor/graphify/security.py +203 -0
  31. package/runtime/python/okstra_vendor/graphify/serve.py +373 -0
  32. package/runtime/python/okstra_vendor/graphify/skill-aider.md +1184 -0
  33. package/runtime/python/okstra_vendor/graphify/skill-claw.md +1184 -0
  34. package/runtime/python/okstra_vendor/graphify/skill-codex.md +1242 -0
  35. package/runtime/python/okstra_vendor/graphify/skill-copilot.md +1268 -0
  36. package/runtime/python/okstra_vendor/graphify/skill-droid.md +1239 -0
  37. package/runtime/python/okstra_vendor/graphify/skill-kiro.md +1183 -0
  38. package/runtime/python/okstra_vendor/graphify/skill-opencode.md +1238 -0
  39. package/runtime/python/okstra_vendor/graphify/skill-trae.md +1208 -0
  40. package/runtime/python/okstra_vendor/graphify/skill-vscode.md +253 -0
  41. package/runtime/python/okstra_vendor/graphify/skill-windows.md +1245 -0
  42. package/runtime/python/okstra_vendor/graphify/skill.md +1319 -0
  43. package/runtime/python/okstra_vendor/graphify/transcribe.py +182 -0
  44. package/runtime/python/okstra_vendor/graphify/validate.py +72 -0
  45. package/runtime/python/okstra_vendor/graphify/watch.py +188 -0
  46. package/runtime/python/okstra_vendor/graphify/wiki.py +214 -0
  47. package/runtime/python/okstra_vendor/networkx/__init__.py +62 -0
  48. package/runtime/python/okstra_vendor/networkx/algorithms/__init__.py +134 -0
  49. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/__init__.py +26 -0
  50. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clique.py +259 -0
  51. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/clustering_coefficient.py +71 -0
  52. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/connectivity.py +412 -0
  53. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/density.py +396 -0
  54. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/distance_measures.py +150 -0
  55. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/dominating_set.py +149 -0
  56. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/kcomponents.py +369 -0
  57. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/matching.py +44 -0
  58. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/maxcut.py +143 -0
  59. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/ramsey.py +53 -0
  60. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/steinertree.py +265 -0
  61. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/__init__.py +0 -0
  62. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_approx_clust_coeff.py +41 -0
  63. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_clique.py +112 -0
  64. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_connectivity.py +199 -0
  65. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_density.py +146 -0
  66. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_distance_measures.py +59 -0
  67. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_dominating_set.py +78 -0
  68. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_kcomponents.py +303 -0
  69. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_matching.py +8 -0
  70. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_maxcut.py +94 -0
  71. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_ramsey.py +31 -0
  72. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_steinertree.py +306 -0
  73. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_traveling_salesman.py +1014 -0
  74. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_treewidth.py +274 -0
  75. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/tests/test_vertex_cover.py +68 -0
  76. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/traveling_salesman.py +1508 -0
  77. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/treewidth.py +255 -0
  78. package/runtime/python/okstra_vendor/networkx/algorithms/approximation/vertex_cover.py +83 -0
  79. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/__init__.py +5 -0
  80. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/connectivity.py +122 -0
  81. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/correlation.py +302 -0
  82. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/mixing.py +255 -0
  83. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/neighbor_degree.py +160 -0
  84. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/pairs.py +127 -0
  85. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/__init__.py +0 -0
  86. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/base_test.py +81 -0
  87. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_connectivity.py +143 -0
  88. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_correlation.py +122 -0
  89. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_mixing.py +174 -0
  90. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_neighbor_degree.py +107 -0
  91. package/runtime/python/okstra_vendor/networkx/algorithms/assortativity/tests/test_pairs.py +87 -0
  92. package/runtime/python/okstra_vendor/networkx/algorithms/asteroidal.py +164 -0
  93. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/__init__.py +88 -0
  94. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/basic.py +322 -0
  95. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/centrality.py +290 -0
  96. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/cluster.py +289 -0
  97. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/covering.py +57 -0
  98. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/edgelist.py +360 -0
  99. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/extendability.py +105 -0
  100. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/generators.py +603 -0
  101. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/link_analysis.py +316 -0
  102. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matching.py +590 -0
  103. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/matrix.py +232 -0
  104. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/projection.py +526 -0
  105. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/redundancy.py +112 -0
  106. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/spectral.py +69 -0
  107. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/__init__.py +0 -0
  108. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_basic.py +125 -0
  109. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_centrality.py +192 -0
  110. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_cluster.py +84 -0
  111. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_covering.py +33 -0
  112. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_edgelist.py +240 -0
  113. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_extendability.py +334 -0
  114. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_generators.py +407 -0
  115. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_link_analysis.py +218 -0
  116. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matching.py +327 -0
  117. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_matrix.py +138 -0
  118. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_project.py +409 -0
  119. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_redundancy.py +35 -0
  120. package/runtime/python/okstra_vendor/networkx/algorithms/bipartite/tests/test_spectral_bipartivity.py +80 -0
  121. package/runtime/python/okstra_vendor/networkx/algorithms/boundary.py +168 -0
  122. package/runtime/python/okstra_vendor/networkx/algorithms/bridges.py +205 -0
  123. package/runtime/python/okstra_vendor/networkx/algorithms/broadcasting.py +164 -0
  124. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/__init__.py +20 -0
  125. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness.py +591 -0
  126. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/betweenness_subset.py +236 -0
  127. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/closeness.py +282 -0
  128. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness.py +364 -0
  129. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_betweenness_subset.py +227 -0
  130. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/current_flow_closeness.py +96 -0
  131. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/degree_alg.py +150 -0
  132. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/dispersion.py +107 -0
  133. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/eigenvector.py +357 -0
  134. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/flow_matrix.py +130 -0
  135. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/group.py +787 -0
  136. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/harmonic.py +88 -0
  137. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/katz.py +331 -0
  138. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/laplacian.py +150 -0
  139. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/load.py +200 -0
  140. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/percolation.py +128 -0
  141. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/reaching.py +209 -0
  142. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/second_order.py +141 -0
  143. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/subgraph_alg.py +361 -0
  144. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/__init__.py +0 -0
  145. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality.py +923 -0
  146. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_betweenness_centrality_subset.py +354 -0
  147. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_closeness_centrality.py +274 -0
  148. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality.py +259 -0
  149. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_betweenness_centrality_subset.py +147 -0
  150. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_current_flow_closeness.py +43 -0
  151. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_degree_centrality.py +144 -0
  152. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_dispersion.py +73 -0
  153. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_eigenvector_centrality.py +186 -0
  154. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_group.py +277 -0
  155. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_harmonic_centrality.py +122 -0
  156. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_katz_centrality.py +345 -0
  157. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_laplacian_centrality.py +220 -0
  158. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_load_centrality.py +344 -0
  159. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_percolation_centrality.py +87 -0
  160. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_reaching.py +140 -0
  161. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_second_order_centrality.py +82 -0
  162. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_subgraph.py +110 -0
  163. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_trophic.py +302 -0
  164. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/tests/test_voterank.py +64 -0
  165. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/trophic.py +181 -0
  166. package/runtime/python/okstra_vendor/networkx/algorithms/centrality/voterank_alg.py +95 -0
  167. package/runtime/python/okstra_vendor/networkx/algorithms/chains.py +172 -0
  168. package/runtime/python/okstra_vendor/networkx/algorithms/chordal.py +443 -0
  169. package/runtime/python/okstra_vendor/networkx/algorithms/clique.py +818 -0
  170. package/runtime/python/okstra_vendor/networkx/algorithms/cluster.py +732 -0
  171. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/__init__.py +4 -0
  172. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/equitable_coloring.py +505 -0
  173. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/greedy_coloring.py +565 -0
  174. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/__init__.py +0 -0
  175. package/runtime/python/okstra_vendor/networkx/algorithms/coloring/tests/test_coloring.py +863 -0
  176. package/runtime/python/okstra_vendor/networkx/algorithms/communicability_alg.py +163 -0
  177. package/runtime/python/okstra_vendor/networkx/algorithms/community/__init__.py +28 -0
  178. package/runtime/python/okstra_vendor/networkx/algorithms/community/asyn_fluid.py +153 -0
  179. package/runtime/python/okstra_vendor/networkx/algorithms/community/bipartitions.py +354 -0
  180. package/runtime/python/okstra_vendor/networkx/algorithms/community/centrality.py +171 -0
  181. package/runtime/python/okstra_vendor/networkx/algorithms/community/community_utils.py +30 -0
  182. package/runtime/python/okstra_vendor/networkx/algorithms/community/divisive.py +216 -0
  183. package/runtime/python/okstra_vendor/networkx/algorithms/community/kclique.py +79 -0
  184. package/runtime/python/okstra_vendor/networkx/algorithms/community/label_propagation.py +338 -0
  185. package/runtime/python/okstra_vendor/networkx/algorithms/community/leiden.py +162 -0
  186. package/runtime/python/okstra_vendor/networkx/algorithms/community/local.py +220 -0
  187. package/runtime/python/okstra_vendor/networkx/algorithms/community/louvain.py +384 -0
  188. package/runtime/python/okstra_vendor/networkx/algorithms/community/lukes.py +227 -0
  189. package/runtime/python/okstra_vendor/networkx/algorithms/community/modularity_max.py +452 -0
  190. package/runtime/python/okstra_vendor/networkx/algorithms/community/quality.py +347 -0
  191. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/__init__.py +0 -0
  192. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_asyn_fluid.py +147 -0
  193. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_bipartitions.py +157 -0
  194. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_centrality.py +85 -0
  195. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_divisive.py +106 -0
  196. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_kclique.py +91 -0
  197. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_label_propagation.py +241 -0
  198. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_leiden.py +138 -0
  199. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_local.py +76 -0
  200. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_louvain.py +264 -0
  201. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_lukes.py +152 -0
  202. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_modularity_max.py +340 -0
  203. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_quality.py +139 -0
  204. package/runtime/python/okstra_vendor/networkx/algorithms/community/tests/test_utils.py +26 -0
  205. package/runtime/python/okstra_vendor/networkx/algorithms/components/__init__.py +6 -0
  206. package/runtime/python/okstra_vendor/networkx/algorithms/components/attracting.py +115 -0
  207. package/runtime/python/okstra_vendor/networkx/algorithms/components/biconnected.py +394 -0
  208. package/runtime/python/okstra_vendor/networkx/algorithms/components/connected.py +282 -0
  209. package/runtime/python/okstra_vendor/networkx/algorithms/components/semiconnected.py +71 -0
  210. package/runtime/python/okstra_vendor/networkx/algorithms/components/strongly_connected.py +359 -0
  211. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/__init__.py +0 -0
  212. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_attracting.py +70 -0
  213. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_biconnected.py +248 -0
  214. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_connected.py +138 -0
  215. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_semiconnected.py +55 -0
  216. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_strongly_connected.py +193 -0
  217. package/runtime/python/okstra_vendor/networkx/algorithms/components/tests/test_weakly_connected.py +96 -0
  218. package/runtime/python/okstra_vendor/networkx/algorithms/components/weakly_connected.py +196 -0
  219. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/__init__.py +11 -0
  220. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/connectivity.py +811 -0
  221. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/cuts.py +616 -0
  222. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/disjoint_paths.py +408 -0
  223. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_augmentation.py +1270 -0
  224. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/edge_kcomponents.py +592 -0
  225. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcomponents.py +220 -0
  226. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/kcutsets.py +235 -0
  227. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/stoerwagner.py +152 -0
  228. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/__init__.py +0 -0
  229. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_connectivity.py +421 -0
  230. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_cuts.py +309 -0
  231. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_disjoint_paths.py +249 -0
  232. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_augmentation.py +502 -0
  233. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_edge_kcomponents.py +488 -0
  234. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcomponents.py +323 -0
  235. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_kcutsets.py +280 -0
  236. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/tests/test_stoer_wagner.py +102 -0
  237. package/runtime/python/okstra_vendor/networkx/algorithms/connectivity/utils.py +88 -0
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@@ -0,0 +1,983 @@
1
+ import pytest
2
+
3
+ import networkx as nx
4
+ from networkx.utils import pairwise
5
+
6
+
7
+ def validate_path(G, s, t, soln_len, path, weight="weight"):
8
+ assert path[0] == s
9
+ assert path[-1] == t
10
+
11
+ if callable(weight):
12
+ weight_f = weight
13
+ else:
14
+ if G.is_multigraph():
15
+
16
+ def weight_f(u, v, d):
17
+ return min(e.get(weight, 1) for e in d.values())
18
+
19
+ else:
20
+
21
+ def weight_f(u, v, d):
22
+ return d.get(weight, 1)
23
+
24
+ computed = sum(weight_f(u, v, G[u][v]) for u, v in pairwise(path))
25
+ assert soln_len == computed
26
+
27
+
28
+ def validate_length_path(G, s, t, soln_len, length, path, weight="weight"):
29
+ assert soln_len == length
30
+ validate_path(G, s, t, length, path, weight=weight)
31
+
32
+
33
+ class WeightedTestBase:
34
+ """Base class for test classes that test functions for computing
35
+ shortest paths in weighted graphs.
36
+
37
+ """
38
+
39
+ def setup_method(self):
40
+ """Creates some graphs for use in the unit tests."""
41
+ cnlti = nx.convert_node_labels_to_integers
42
+ self.grid = cnlti(nx.grid_2d_graph(4, 4), first_label=1, ordering="sorted")
43
+ self.cycle = nx.cycle_graph(7)
44
+ self.directed_cycle = nx.cycle_graph(7, create_using=nx.DiGraph())
45
+ self.XG = nx.DiGraph()
46
+ self.XG.add_weighted_edges_from(
47
+ [
48
+ ("s", "u", 10),
49
+ ("s", "x", 5),
50
+ ("u", "v", 1),
51
+ ("u", "x", 2),
52
+ ("v", "y", 1),
53
+ ("x", "u", 3),
54
+ ("x", "v", 5),
55
+ ("x", "y", 2),
56
+ ("y", "s", 7),
57
+ ("y", "v", 6),
58
+ ]
59
+ )
60
+ self.MXG = nx.MultiDiGraph(self.XG)
61
+ self.MXG.add_edge("s", "u", weight=15)
62
+ self.XG2 = nx.DiGraph()
63
+ self.XG2.add_weighted_edges_from(
64
+ [
65
+ [1, 4, 1],
66
+ [4, 5, 1],
67
+ [5, 6, 1],
68
+ [6, 3, 1],
69
+ [1, 3, 50],
70
+ [1, 2, 100],
71
+ [2, 3, 100],
72
+ ]
73
+ )
74
+
75
+ self.XG3 = nx.Graph()
76
+ self.XG3.add_weighted_edges_from(
77
+ [[0, 1, 2], [1, 2, 12], [2, 3, 1], [3, 4, 5], [4, 5, 1], [5, 0, 10]]
78
+ )
79
+
80
+ self.XG4 = nx.Graph()
81
+ self.XG4.add_weighted_edges_from(
82
+ [
83
+ [0, 1, 2],
84
+ [1, 2, 2],
85
+ [2, 3, 1],
86
+ [3, 4, 1],
87
+ [4, 5, 1],
88
+ [5, 6, 1],
89
+ [6, 7, 1],
90
+ [7, 0, 1],
91
+ ]
92
+ )
93
+ self.MXG4 = nx.MultiGraph(self.XG4)
94
+ self.MXG4.add_edge(0, 1, weight=3)
95
+ self.G = nx.DiGraph() # no weights
96
+ self.G.add_edges_from(
97
+ [
98
+ ("s", "u"),
99
+ ("s", "x"),
100
+ ("u", "v"),
101
+ ("u", "x"),
102
+ ("v", "y"),
103
+ ("x", "u"),
104
+ ("x", "v"),
105
+ ("x", "y"),
106
+ ("y", "s"),
107
+ ("y", "v"),
108
+ ]
109
+ )
110
+
111
+
112
+ class TestWeightedPath(WeightedTestBase):
113
+ def test_dijkstra(self):
114
+ (D, P) = nx.single_source_dijkstra(self.XG, "s")
115
+ validate_path(self.XG, "s", "v", 9, P["v"])
116
+ assert D["v"] == 9
117
+
118
+ validate_path(
119
+ self.XG, "s", "v", 9, nx.single_source_dijkstra_path(self.XG, "s")["v"]
120
+ )
121
+ assert nx.single_source_dijkstra_path_length(self.XG, "s")["v"] == 9
122
+
123
+ validate_path(
124
+ self.XG, "s", "v", 9, nx.single_source_dijkstra(self.XG, "s")[1]["v"]
125
+ )
126
+ validate_path(
127
+ self.MXG, "s", "v", 9, nx.single_source_dijkstra_path(self.MXG, "s")["v"]
128
+ )
129
+
130
+ GG = self.XG.to_undirected()
131
+ # make sure we get lower weight
132
+ # to_undirected might choose either edge with weight 2 or weight 3
133
+ GG["u"]["x"]["weight"] = 2
134
+ (D, P) = nx.single_source_dijkstra(GG, "s")
135
+ validate_path(GG, "s", "v", 8, P["v"])
136
+ assert D["v"] == 8 # uses lower weight of 2 on u<->x edge
137
+ validate_path(GG, "s", "v", 8, nx.dijkstra_path(GG, "s", "v"))
138
+ assert nx.dijkstra_path_length(GG, "s", "v") == 8
139
+
140
+ validate_path(self.XG2, 1, 3, 4, nx.dijkstra_path(self.XG2, 1, 3))
141
+ validate_path(self.XG3, 0, 3, 15, nx.dijkstra_path(self.XG3, 0, 3))
142
+ assert nx.dijkstra_path_length(self.XG3, 0, 3) == 15
143
+ validate_path(self.XG4, 0, 2, 4, nx.dijkstra_path(self.XG4, 0, 2))
144
+ assert nx.dijkstra_path_length(self.XG4, 0, 2) == 4
145
+ validate_path(self.MXG4, 0, 2, 4, nx.dijkstra_path(self.MXG4, 0, 2))
146
+ validate_path(
147
+ self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s", "v")[1]
148
+ )
149
+ validate_path(
150
+ self.G, "s", "v", 2, nx.single_source_dijkstra(self.G, "s")[1]["v"]
151
+ )
152
+
153
+ validate_path(self.G, "s", "v", 2, nx.dijkstra_path(self.G, "s", "v"))
154
+ assert nx.dijkstra_path_length(self.G, "s", "v") == 2
155
+
156
+ # NetworkXError: node s not reachable from moon
157
+ pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path, self.G, "s", "moon")
158
+ pytest.raises(nx.NetworkXNoPath, nx.dijkstra_path_length, self.G, "s", "moon")
159
+
160
+ validate_path(self.cycle, 0, 3, 3, nx.dijkstra_path(self.cycle, 0, 3))
161
+ validate_path(self.cycle, 0, 4, 3, nx.dijkstra_path(self.cycle, 0, 4))
162
+
163
+ assert nx.single_source_dijkstra(self.cycle, 0, 0) == (0, [0])
164
+
165
+ def test_bidirectional_dijkstra(self):
166
+ validate_length_path(
167
+ self.XG, "s", "v", 9, *nx.bidirectional_dijkstra(self.XG, "s", "v")
168
+ )
169
+ validate_length_path(
170
+ self.G, "s", "v", 2, *nx.bidirectional_dijkstra(self.G, "s", "v")
171
+ )
172
+ validate_length_path(
173
+ self.cycle, 0, 3, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 3)
174
+ )
175
+ validate_length_path(
176
+ self.cycle, 0, 4, 3, *nx.bidirectional_dijkstra(self.cycle, 0, 4)
177
+ )
178
+ validate_length_path(
179
+ self.XG3, 0, 3, 15, *nx.bidirectional_dijkstra(self.XG3, 0, 3)
180
+ )
181
+ validate_length_path(
182
+ self.XG4, 0, 2, 4, *nx.bidirectional_dijkstra(self.XG4, 0, 2)
183
+ )
184
+
185
+ # need more tests here
186
+ P = nx.single_source_dijkstra_path(self.XG, "s")["v"]
187
+ validate_path(
188
+ self.XG,
189
+ "s",
190
+ "v",
191
+ sum(self.XG[u][v]["weight"] for u, v in zip(P[:-1], P[1:])),
192
+ nx.dijkstra_path(self.XG, "s", "v"),
193
+ )
194
+
195
+ # check absent source
196
+ G = nx.path_graph(2)
197
+ pytest.raises(nx.NodeNotFound, nx.bidirectional_dijkstra, G, 3, 0)
198
+
199
+ def test_weight_functions(self):
200
+ def heuristic(*z):
201
+ return sum(val**2 for val in z)
202
+
203
+ def getpath(pred, v, s):
204
+ return [v] if v == s else getpath(pred, pred[v], s) + [v]
205
+
206
+ def goldberg_radzik(g, s, t, weight="weight"):
207
+ pred, dist = nx.goldberg_radzik(g, s, weight=weight)
208
+ dist = dist[t]
209
+ return dist, getpath(pred, t, s)
210
+
211
+ def astar(g, s, t, weight="weight"):
212
+ path = nx.astar_path(g, s, t, heuristic, weight=weight)
213
+ dist = nx.astar_path_length(g, s, t, heuristic, weight=weight)
214
+ return dist, path
215
+
216
+ def vlp(G, s, t, l, F, w):
217
+ res = F(G, s, t, weight=w)
218
+ validate_length_path(G, s, t, l, *res, weight=w)
219
+
220
+ G = self.cycle
221
+ s = 6
222
+ t = 4
223
+ path = [6] + list(range(t + 1))
224
+
225
+ def weight(u, v, _):
226
+ return 1 + v**2
227
+
228
+ length = sum(weight(u, v, None) for u, v in pairwise(path))
229
+ vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
230
+ vlp(G, s, t, length, nx.single_source_dijkstra, weight)
231
+ vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
232
+ vlp(G, s, t, length, goldberg_radzik, weight)
233
+ vlp(G, s, t, length, astar, weight)
234
+
235
+ def weight(u, v, _):
236
+ return 2 ** (u * v)
237
+
238
+ length = sum(weight(u, v, None) for u, v in pairwise(path))
239
+ vlp(G, s, t, length, nx.bidirectional_dijkstra, weight)
240
+ vlp(G, s, t, length, nx.single_source_dijkstra, weight)
241
+ vlp(G, s, t, length, nx.single_source_bellman_ford, weight)
242
+ vlp(G, s, t, length, goldberg_radzik, weight)
243
+ vlp(G, s, t, length, astar, weight)
244
+
245
+ def test_bidirectional_dijkstra_no_path(self):
246
+ with pytest.raises(nx.NetworkXNoPath):
247
+ G = nx.Graph()
248
+ nx.add_path(G, [1, 2, 3])
249
+ nx.add_path(G, [4, 5, 6])
250
+ path = nx.bidirectional_dijkstra(G, 1, 6)
251
+
252
+ @pytest.mark.parametrize(
253
+ "fn",
254
+ (
255
+ nx.dijkstra_path,
256
+ nx.dijkstra_path_length,
257
+ nx.single_source_dijkstra_path,
258
+ nx.single_source_dijkstra_path_length,
259
+ nx.single_source_dijkstra,
260
+ nx.dijkstra_predecessor_and_distance,
261
+ ),
262
+ )
263
+ def test_absent_source(self, fn):
264
+ G = nx.path_graph(2)
265
+ with pytest.raises(nx.NodeNotFound):
266
+ fn(G, 3, 0)
267
+ # Test when source == target, which is handled specially by some functions
268
+ with pytest.raises(nx.NodeNotFound):
269
+ fn(G, 3, 3)
270
+
271
+ def test_dijkstra_predecessor1(self):
272
+ G = nx.path_graph(4)
273
+ assert nx.dijkstra_predecessor_and_distance(G, 0) == (
274
+ {0: [], 1: [0], 2: [1], 3: [2]},
275
+ {0: 0, 1: 1, 2: 2, 3: 3},
276
+ )
277
+
278
+ def test_dijkstra_predecessor2(self):
279
+ # 4-cycle
280
+ G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
281
+ pred, dist = nx.dijkstra_predecessor_and_distance(G, (0))
282
+ assert pred[0] == []
283
+ assert pred[1] == [0]
284
+ assert pred[2] in [[1, 3], [3, 1]]
285
+ assert pred[3] == [0]
286
+ assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
287
+
288
+ def test_dijkstra_predecessor3(self):
289
+ XG = nx.DiGraph()
290
+ XG.add_weighted_edges_from(
291
+ [
292
+ ("s", "u", 10),
293
+ ("s", "x", 5),
294
+ ("u", "v", 1),
295
+ ("u", "x", 2),
296
+ ("v", "y", 1),
297
+ ("x", "u", 3),
298
+ ("x", "v", 5),
299
+ ("x", "y", 2),
300
+ ("y", "s", 7),
301
+ ("y", "v", 6),
302
+ ]
303
+ )
304
+ (P, D) = nx.dijkstra_predecessor_and_distance(XG, "s")
305
+ assert P["v"] == ["u"]
306
+ assert D["v"] == 9
307
+ (P, D) = nx.dijkstra_predecessor_and_distance(XG, "s", cutoff=8)
308
+ assert "v" not in D
309
+
310
+ def test_single_source_dijkstra_path_length(self):
311
+ pl = nx.single_source_dijkstra_path_length
312
+ assert dict(pl(self.MXG4, 0))[2] == 4
313
+ spl = pl(self.MXG4, 0, cutoff=2)
314
+ assert 2 not in spl
315
+
316
+ def test_bidirectional_dijkstra_multigraph(self):
317
+ G = nx.MultiGraph()
318
+ G.add_edge("a", "b", weight=10)
319
+ G.add_edge("a", "b", weight=100)
320
+ dp = nx.bidirectional_dijkstra(G, "a", "b")
321
+ assert dp == (10, ["a", "b"])
322
+
323
+ def test_dijkstra_pred_distance_multigraph(self):
324
+ G = nx.MultiGraph()
325
+ G.add_edge("a", "b", key="short", foo=5, weight=100)
326
+ G.add_edge("a", "b", key="long", bar=1, weight=110)
327
+ p, d = nx.dijkstra_predecessor_and_distance(G, "a")
328
+ assert p == {"a": [], "b": ["a"]}
329
+ assert d == {"a": 0, "b": 100}
330
+
331
+ def test_negative_edge_cycle(self):
332
+ G = nx.cycle_graph(5, create_using=nx.DiGraph())
333
+ assert not nx.negative_edge_cycle(G)
334
+ G.add_edge(8, 9, weight=-7)
335
+ G.add_edge(9, 8, weight=3)
336
+ graph_size = len(G)
337
+ assert nx.negative_edge_cycle(G)
338
+ assert graph_size == len(G)
339
+ pytest.raises(ValueError, nx.single_source_dijkstra_path_length, G, 8)
340
+ pytest.raises(ValueError, nx.single_source_dijkstra, G, 8)
341
+ pytest.raises(ValueError, nx.dijkstra_predecessor_and_distance, G, 8)
342
+ G.add_edge(9, 10)
343
+ pytest.raises(ValueError, nx.bidirectional_dijkstra, G, 8, 10)
344
+ G = nx.MultiDiGraph()
345
+ G.add_edge(2, 2, weight=-1)
346
+ assert nx.negative_edge_cycle(G)
347
+
348
+ def test_negative_edge_cycle_empty(self):
349
+ G = nx.DiGraph()
350
+ assert not nx.negative_edge_cycle(G)
351
+
352
+ def test_negative_edge_cycle_custom_weight_key(self):
353
+ d = nx.DiGraph()
354
+ d.add_edge("a", "b", w=-2)
355
+ d.add_edge("b", "a", w=-1)
356
+ assert nx.negative_edge_cycle(d, weight="w")
357
+
358
+ def test_weight_function(self):
359
+ """Tests that a callable weight is interpreted as a weight
360
+ function instead of an edge attribute.
361
+
362
+ """
363
+ # Create a triangle in which the edge from node 0 to node 2 has
364
+ # a large weight and the other two edges have a small weight.
365
+ G = nx.complete_graph(3)
366
+ G.adj[0][2]["weight"] = 10
367
+ G.adj[0][1]["weight"] = 1
368
+ G.adj[1][2]["weight"] = 1
369
+
370
+ # The weight function will take the multiplicative inverse of
371
+ # the weights on the edges. This way, weights that were large
372
+ # before now become small and vice versa.
373
+
374
+ def weight(u, v, d):
375
+ return 1 / d["weight"]
376
+
377
+ # The shortest path from 0 to 2 using the actual weights on the
378
+ # edges should be [0, 1, 2].
379
+ distance, path = nx.single_source_dijkstra(G, 0, 2)
380
+ assert distance == 2
381
+ assert path == [0, 1, 2]
382
+ # However, with the above weight function, the shortest path
383
+ # should be [0, 2], since that has a very small weight.
384
+ distance, path = nx.single_source_dijkstra(G, 0, 2, weight=weight)
385
+ assert distance == 1 / 10
386
+ assert path == [0, 2]
387
+
388
+ def test_all_pairs_dijkstra_path(self):
389
+ cycle = nx.cycle_graph(7)
390
+ p = dict(nx.all_pairs_dijkstra_path(cycle))
391
+ assert p[0][3] == [0, 1, 2, 3]
392
+
393
+ cycle[1][2]["weight"] = 10
394
+ p = dict(nx.all_pairs_dijkstra_path(cycle))
395
+ assert p[0][3] == [0, 6, 5, 4, 3]
396
+
397
+ def test_all_pairs_dijkstra_path_length(self):
398
+ cycle = nx.cycle_graph(7)
399
+ pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
400
+ assert pl[0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
401
+
402
+ cycle[1][2]["weight"] = 10
403
+ pl = dict(nx.all_pairs_dijkstra_path_length(cycle))
404
+ assert pl[0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
405
+
406
+ def test_all_pairs_dijkstra(self):
407
+ cycle = nx.cycle_graph(7)
408
+ out = dict(nx.all_pairs_dijkstra(cycle))
409
+ assert out[0][0] == {0: 0, 1: 1, 2: 2, 3: 3, 4: 3, 5: 2, 6: 1}
410
+ assert out[0][1][3] == [0, 1, 2, 3]
411
+
412
+ cycle[1][2]["weight"] = 10
413
+ out = dict(nx.all_pairs_dijkstra(cycle))
414
+ assert out[0][0] == {0: 0, 1: 1, 2: 5, 3: 4, 4: 3, 5: 2, 6: 1}
415
+ assert out[0][1][3] == [0, 6, 5, 4, 3]
416
+
417
+
418
+ class TestDijkstraPathLength:
419
+ """Unit tests for the :func:`networkx.dijkstra_path_length`
420
+ function.
421
+
422
+ """
423
+
424
+ def test_weight_function(self):
425
+ """Tests for computing the length of the shortest path using
426
+ Dijkstra's algorithm with a user-defined weight function.
427
+
428
+ """
429
+ # Create a triangle in which the edge from node 0 to node 2 has
430
+ # a large weight and the other two edges have a small weight.
431
+ G = nx.complete_graph(3)
432
+ G.adj[0][2]["weight"] = 10
433
+ G.adj[0][1]["weight"] = 1
434
+ G.adj[1][2]["weight"] = 1
435
+
436
+ # The weight function will take the multiplicative inverse of
437
+ # the weights on the edges. This way, weights that were large
438
+ # before now become small and vice versa.
439
+
440
+ def weight(u, v, d):
441
+ return 1 / d["weight"]
442
+
443
+ # The shortest path from 0 to 2 using the actual weights on the
444
+ # edges should be [0, 1, 2]. However, with the above weight
445
+ # function, the shortest path should be [0, 2], since that has a
446
+ # very small weight.
447
+ length = nx.dijkstra_path_length(G, 0, 2, weight=weight)
448
+ assert length == 1 / 10
449
+
450
+
451
+ class TestMultiSourceDijkstra:
452
+ """Unit tests for the multi-source dialect of Dijkstra's shortest
453
+ path algorithms.
454
+
455
+ """
456
+
457
+ def test_no_sources(self):
458
+ with pytest.raises(ValueError):
459
+ nx.multi_source_dijkstra(nx.Graph(), {})
460
+
461
+ def test_path_no_sources(self):
462
+ with pytest.raises(ValueError):
463
+ nx.multi_source_dijkstra_path(nx.Graph(), {})
464
+
465
+ def test_path_length_no_sources(self):
466
+ with pytest.raises(ValueError):
467
+ nx.multi_source_dijkstra_path_length(nx.Graph(), {})
468
+
469
+ @pytest.mark.parametrize(
470
+ "fn",
471
+ (
472
+ nx.multi_source_dijkstra_path,
473
+ nx.multi_source_dijkstra_path_length,
474
+ nx.multi_source_dijkstra,
475
+ ),
476
+ )
477
+ def test_absent_source(self, fn):
478
+ G = nx.path_graph(2)
479
+ with pytest.raises(nx.NodeNotFound):
480
+ fn(G, [3], 0)
481
+ with pytest.raises(nx.NodeNotFound):
482
+ fn(G, [3], 3)
483
+
484
+ def test_two_sources(self):
485
+ edges = [(0, 1, 1), (1, 2, 1), (2, 3, 10), (3, 4, 1)]
486
+ G = nx.Graph()
487
+ G.add_weighted_edges_from(edges)
488
+ sources = {0, 4}
489
+ distances, paths = nx.multi_source_dijkstra(G, sources)
490
+ expected_distances = {0: 0, 1: 1, 2: 2, 3: 1, 4: 0}
491
+ expected_paths = {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [4, 3], 4: [4]}
492
+ assert distances == expected_distances
493
+ assert paths == expected_paths
494
+
495
+ def test_simple_paths(self):
496
+ G = nx.path_graph(4)
497
+ lengths = nx.multi_source_dijkstra_path_length(G, [0])
498
+ assert lengths == {n: n for n in G}
499
+ paths = nx.multi_source_dijkstra_path(G, [0])
500
+ assert paths == {n: list(range(n + 1)) for n in G}
501
+
502
+
503
+ class TestBellmanFordAndGoldbergRadzik(WeightedTestBase):
504
+ def test_single_node_graph(self):
505
+ G = nx.DiGraph()
506
+ G.add_node(0)
507
+ assert nx.single_source_bellman_ford_path(G, 0) == {0: [0]}
508
+ assert nx.single_source_bellman_ford_path_length(G, 0) == {0: 0}
509
+ assert nx.single_source_bellman_ford(G, 0) == ({0: 0}, {0: [0]})
510
+ assert nx.bellman_ford_predecessor_and_distance(G, 0) == ({0: []}, {0: 0})
511
+ assert nx.goldberg_radzik(G, 0) == ({0: None}, {0: 0})
512
+
513
+ def test_absent_source_bellman_ford(self):
514
+ # the check is in _bellman_ford; this provides regression testing
515
+ # against later changes to "client" Bellman-Ford functions
516
+ G = nx.path_graph(2)
517
+ for fn in (
518
+ nx.bellman_ford_predecessor_and_distance,
519
+ nx.bellman_ford_path,
520
+ nx.bellman_ford_path_length,
521
+ nx.single_source_bellman_ford_path,
522
+ nx.single_source_bellman_ford_path_length,
523
+ nx.single_source_bellman_ford,
524
+ ):
525
+ pytest.raises(nx.NodeNotFound, fn, G, 3, 0)
526
+ pytest.raises(nx.NodeNotFound, fn, G, 3, 3)
527
+
528
+ def test_absent_source_goldberg_radzik(self):
529
+ with pytest.raises(nx.NodeNotFound):
530
+ G = nx.path_graph(2)
531
+ nx.goldberg_radzik(G, 3, 0)
532
+
533
+ def test_negative_cycle_heuristic(self):
534
+ G = nx.DiGraph()
535
+ G.add_edge(0, 1, weight=-1)
536
+ G.add_edge(1, 2, weight=-1)
537
+ G.add_edge(2, 3, weight=-1)
538
+ G.add_edge(3, 0, weight=3)
539
+ assert not nx.negative_edge_cycle(G, heuristic=True)
540
+ G.add_edge(2, 0, weight=1.999)
541
+ assert nx.negative_edge_cycle(G, heuristic=True)
542
+ G.edges[2, 0]["weight"] = 2
543
+ assert not nx.negative_edge_cycle(G, heuristic=True)
544
+
545
+ def test_negative_cycle_consistency(self):
546
+ import random
547
+
548
+ unif = random.uniform
549
+ for random_seed in range(2): # range(20):
550
+ random.seed(random_seed)
551
+ for density in [0.1, 0.9]: # .3, .7, .9]:
552
+ for N in [1, 10, 20]: # range(1, 60 - int(30 * density)):
553
+ for max_cost in [1, 90]: # [1, 10, 40, 90]:
554
+ G = nx.binomial_graph(N, density, seed=4, directed=True)
555
+ edges = ((u, v, unif(-1, max_cost)) for u, v in G.edges)
556
+ G.add_weighted_edges_from(edges)
557
+
558
+ no_heuristic = nx.negative_edge_cycle(G, heuristic=False)
559
+ with_heuristic = nx.negative_edge_cycle(G, heuristic=True)
560
+ assert no_heuristic == with_heuristic
561
+
562
+ def test_negative_cycle(self):
563
+ G = nx.cycle_graph(5, create_using=nx.DiGraph())
564
+ G.add_edge(1, 2, weight=-7)
565
+ for i in range(5):
566
+ pytest.raises(
567
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
568
+ )
569
+ pytest.raises(
570
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
571
+ )
572
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
573
+ pytest.raises(
574
+ nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
575
+ )
576
+ pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
577
+ G = nx.cycle_graph(5) # undirected Graph
578
+ G.add_edge(1, 2, weight=-3)
579
+ for i in range(5):
580
+ pytest.raises(
581
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, i
582
+ )
583
+ pytest.raises(
584
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, i
585
+ )
586
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, i)
587
+ pytest.raises(
588
+ nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, i
589
+ )
590
+ pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, i)
591
+ G = nx.DiGraph([(1, 1, {"weight": -1})])
592
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, 1)
593
+ pytest.raises(
594
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, 1
595
+ )
596
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, 1)
597
+ pytest.raises(
598
+ nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
599
+ )
600
+ pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
601
+ G = nx.MultiDiGraph([(1, 1, {"weight": -1})])
602
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford_path, G, 1)
603
+ pytest.raises(
604
+ nx.NetworkXUnbounded, nx.single_source_bellman_ford_path_length, G, 1
605
+ )
606
+ pytest.raises(nx.NetworkXUnbounded, nx.single_source_bellman_ford, G, 1)
607
+ pytest.raises(
608
+ nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
609
+ )
610
+ pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
611
+
612
+ def test_zero_cycle(self):
613
+ G = nx.cycle_graph(5, create_using=nx.DiGraph())
614
+ G.add_edge(2, 3, weight=-4)
615
+ # check that zero cycle doesn't raise
616
+ nx.goldberg_radzik(G, 1)
617
+ nx.bellman_ford_predecessor_and_distance(G, 1)
618
+
619
+ G.add_edge(2, 3, weight=-4.0001)
620
+ # check that negative cycle does raise
621
+ pytest.raises(
622
+ nx.NetworkXUnbounded, nx.bellman_ford_predecessor_and_distance, G, 1
623
+ )
624
+ pytest.raises(nx.NetworkXUnbounded, nx.goldberg_radzik, G, 1)
625
+
626
+ def test_find_negative_cycle_longer_cycle(self):
627
+ G = nx.cycle_graph(5, create_using=nx.DiGraph())
628
+ nx.add_cycle(G, [3, 5, 6, 7, 8, 9])
629
+ G.add_edge(1, 2, weight=-30)
630
+ assert nx.find_negative_cycle(G, 1) == [0, 1, 2, 3, 4, 0]
631
+ assert nx.find_negative_cycle(G, 7) == [2, 3, 4, 0, 1, 2]
632
+
633
+ def test_find_negative_cycle_no_cycle(self):
634
+ G = nx.path_graph(5, create_using=nx.DiGraph())
635
+ pytest.raises(nx.NetworkXError, nx.find_negative_cycle, G, 3)
636
+
637
+ def test_find_negative_cycle_single_edge(self):
638
+ G = nx.Graph()
639
+ G.add_edge(0, 1, weight=-1)
640
+ assert nx.find_negative_cycle(G, 1) == [1, 0, 1]
641
+
642
+ def test_negative_weight(self):
643
+ G = nx.cycle_graph(5, create_using=nx.DiGraph())
644
+ G.add_edge(1, 2, weight=-3)
645
+ assert nx.single_source_bellman_ford_path(G, 0) == {
646
+ 0: [0],
647
+ 1: [0, 1],
648
+ 2: [0, 1, 2],
649
+ 3: [0, 1, 2, 3],
650
+ 4: [0, 1, 2, 3, 4],
651
+ }
652
+ assert nx.single_source_bellman_ford_path_length(G, 0) == {
653
+ 0: 0,
654
+ 1: 1,
655
+ 2: -2,
656
+ 3: -1,
657
+ 4: 0,
658
+ }
659
+ assert nx.single_source_bellman_ford(G, 0) == (
660
+ {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
661
+ {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3], 4: [0, 1, 2, 3, 4]},
662
+ )
663
+ assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
664
+ {0: [], 1: [0], 2: [1], 3: [2], 4: [3]},
665
+ {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
666
+ )
667
+ assert nx.goldberg_radzik(G, 0) == (
668
+ {0: None, 1: 0, 2: 1, 3: 2, 4: 3},
669
+ {0: 0, 1: 1, 2: -2, 3: -1, 4: 0},
670
+ )
671
+
672
+ def test_not_connected(self):
673
+ G = nx.complete_graph(6)
674
+ G.add_edge(10, 11)
675
+ G.add_edge(10, 12)
676
+ assert nx.single_source_bellman_ford_path(G, 0) == {
677
+ 0: [0],
678
+ 1: [0, 1],
679
+ 2: [0, 2],
680
+ 3: [0, 3],
681
+ 4: [0, 4],
682
+ 5: [0, 5],
683
+ }
684
+ assert nx.single_source_bellman_ford_path_length(G, 0) == {
685
+ 0: 0,
686
+ 1: 1,
687
+ 2: 1,
688
+ 3: 1,
689
+ 4: 1,
690
+ 5: 1,
691
+ }
692
+ assert nx.single_source_bellman_ford(G, 0) == (
693
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
694
+ {0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
695
+ )
696
+ assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
697
+ {0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
698
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
699
+ )
700
+ assert nx.goldberg_radzik(G, 0) == (
701
+ {0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
702
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
703
+ )
704
+
705
+ # not connected, with a component not containing the source that
706
+ # contains a negative cycle.
707
+ G = nx.complete_graph(6)
708
+ G.add_edges_from(
709
+ [
710
+ ("A", "B", {"load": 3}),
711
+ ("B", "C", {"load": -10}),
712
+ ("C", "A", {"load": 2}),
713
+ ]
714
+ )
715
+ assert nx.single_source_bellman_ford_path(G, 0, weight="load") == {
716
+ 0: [0],
717
+ 1: [0, 1],
718
+ 2: [0, 2],
719
+ 3: [0, 3],
720
+ 4: [0, 4],
721
+ 5: [0, 5],
722
+ }
723
+ assert nx.single_source_bellman_ford_path_length(G, 0, weight="load") == {
724
+ 0: 0,
725
+ 1: 1,
726
+ 2: 1,
727
+ 3: 1,
728
+ 4: 1,
729
+ 5: 1,
730
+ }
731
+ assert nx.single_source_bellman_ford(G, 0, weight="load") == (
732
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
733
+ {0: [0], 1: [0, 1], 2: [0, 2], 3: [0, 3], 4: [0, 4], 5: [0, 5]},
734
+ )
735
+ assert nx.bellman_ford_predecessor_and_distance(G, 0, weight="load") == (
736
+ {0: [], 1: [0], 2: [0], 3: [0], 4: [0], 5: [0]},
737
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
738
+ )
739
+ assert nx.goldberg_radzik(G, 0, weight="load") == (
740
+ {0: None, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0},
741
+ {0: 0, 1: 1, 2: 1, 3: 1, 4: 1, 5: 1},
742
+ )
743
+
744
+ def test_multigraph(self):
745
+ assert nx.bellman_ford_path(self.MXG, "s", "v") == ["s", "x", "u", "v"]
746
+ assert nx.bellman_ford_path_length(self.MXG, "s", "v") == 9
747
+ assert nx.single_source_bellman_ford_path(self.MXG, "s")["v"] == [
748
+ "s",
749
+ "x",
750
+ "u",
751
+ "v",
752
+ ]
753
+ assert nx.single_source_bellman_ford_path_length(self.MXG, "s")["v"] == 9
754
+ D, P = nx.single_source_bellman_ford(self.MXG, "s", target="v")
755
+ assert D == 9
756
+ assert P == ["s", "x", "u", "v"]
757
+ P, D = nx.bellman_ford_predecessor_and_distance(self.MXG, "s")
758
+ assert P["v"] == ["u"]
759
+ assert D["v"] == 9
760
+ P, D = nx.goldberg_radzik(self.MXG, "s")
761
+ assert P["v"] == "u"
762
+ assert D["v"] == 9
763
+ assert nx.bellman_ford_path(self.MXG4, 0, 2) == [0, 1, 2]
764
+ assert nx.bellman_ford_path_length(self.MXG4, 0, 2) == 4
765
+ assert nx.single_source_bellman_ford_path(self.MXG4, 0)[2] == [0, 1, 2]
766
+ assert nx.single_source_bellman_ford_path_length(self.MXG4, 0)[2] == 4
767
+ D, P = nx.single_source_bellman_ford(self.MXG4, 0, target=2)
768
+ assert D == 4
769
+ assert P == [0, 1, 2]
770
+ P, D = nx.bellman_ford_predecessor_and_distance(self.MXG4, 0)
771
+ assert P[2] == [1]
772
+ assert D[2] == 4
773
+ P, D = nx.goldberg_radzik(self.MXG4, 0)
774
+ assert P[2] == 1
775
+ assert D[2] == 4
776
+
777
+ def test_others(self):
778
+ assert nx.bellman_ford_path(self.XG, "s", "v") == ["s", "x", "u", "v"]
779
+ assert nx.bellman_ford_path_length(self.XG, "s", "v") == 9
780
+ assert nx.single_source_bellman_ford_path(self.XG, "s")["v"] == [
781
+ "s",
782
+ "x",
783
+ "u",
784
+ "v",
785
+ ]
786
+ assert nx.single_source_bellman_ford_path_length(self.XG, "s")["v"] == 9
787
+ D, P = nx.single_source_bellman_ford(self.XG, "s", target="v")
788
+ assert D == 9
789
+ assert P == ["s", "x", "u", "v"]
790
+ (P, D) = nx.bellman_ford_predecessor_and_distance(self.XG, "s")
791
+ assert P["v"] == ["u"]
792
+ assert D["v"] == 9
793
+ (P, D) = nx.goldberg_radzik(self.XG, "s")
794
+ assert P["v"] == "u"
795
+ assert D["v"] == 9
796
+
797
+ def test_path_graph(self):
798
+ G = nx.path_graph(4)
799
+ assert nx.single_source_bellman_ford_path(G, 0) == {
800
+ 0: [0],
801
+ 1: [0, 1],
802
+ 2: [0, 1, 2],
803
+ 3: [0, 1, 2, 3],
804
+ }
805
+ assert nx.single_source_bellman_ford_path_length(G, 0) == {
806
+ 0: 0,
807
+ 1: 1,
808
+ 2: 2,
809
+ 3: 3,
810
+ }
811
+ assert nx.single_source_bellman_ford(G, 0) == (
812
+ {0: 0, 1: 1, 2: 2, 3: 3},
813
+ {0: [0], 1: [0, 1], 2: [0, 1, 2], 3: [0, 1, 2, 3]},
814
+ )
815
+ assert nx.bellman_ford_predecessor_and_distance(G, 0) == (
816
+ {0: [], 1: [0], 2: [1], 3: [2]},
817
+ {0: 0, 1: 1, 2: 2, 3: 3},
818
+ )
819
+ assert nx.goldberg_radzik(G, 0) == (
820
+ {0: None, 1: 0, 2: 1, 3: 2},
821
+ {0: 0, 1: 1, 2: 2, 3: 3},
822
+ )
823
+ assert nx.single_source_bellman_ford_path(G, 3) == {
824
+ 0: [3, 2, 1, 0],
825
+ 1: [3, 2, 1],
826
+ 2: [3, 2],
827
+ 3: [3],
828
+ }
829
+ assert nx.single_source_bellman_ford_path_length(G, 3) == {
830
+ 0: 3,
831
+ 1: 2,
832
+ 2: 1,
833
+ 3: 0,
834
+ }
835
+ assert nx.single_source_bellman_ford(G, 3) == (
836
+ {0: 3, 1: 2, 2: 1, 3: 0},
837
+ {0: [3, 2, 1, 0], 1: [3, 2, 1], 2: [3, 2], 3: [3]},
838
+ )
839
+ assert nx.bellman_ford_predecessor_and_distance(G, 3) == (
840
+ {0: [1], 1: [2], 2: [3], 3: []},
841
+ {0: 3, 1: 2, 2: 1, 3: 0},
842
+ )
843
+ assert nx.goldberg_radzik(G, 3) == (
844
+ {0: 1, 1: 2, 2: 3, 3: None},
845
+ {0: 3, 1: 2, 2: 1, 3: 0},
846
+ )
847
+
848
+ def test_4_cycle(self):
849
+ # 4-cycle
850
+ G = nx.Graph([(0, 1), (1, 2), (2, 3), (3, 0)])
851
+ dist, path = nx.single_source_bellman_ford(G, 0)
852
+ assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
853
+ assert path[0] == [0]
854
+ assert path[1] == [0, 1]
855
+ assert path[2] in [[0, 1, 2], [0, 3, 2]]
856
+ assert path[3] == [0, 3]
857
+
858
+ pred, dist = nx.bellman_ford_predecessor_and_distance(G, 0)
859
+ assert pred[0] == []
860
+ assert pred[1] == [0]
861
+ assert pred[2] in [[1, 3], [3, 1]]
862
+ assert pred[3] == [0]
863
+ assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
864
+
865
+ pred, dist = nx.goldberg_radzik(G, 0)
866
+ assert pred[0] is None
867
+ assert pred[1] == 0
868
+ assert pred[2] in [1, 3]
869
+ assert pred[3] == 0
870
+ assert dist == {0: 0, 1: 1, 2: 2, 3: 1}
871
+
872
+ def test_negative_weight_bf_path(self):
873
+ G = nx.DiGraph()
874
+ G.add_nodes_from("abcd")
875
+ G.add_edge("a", "d", weight=0)
876
+ G.add_edge("a", "b", weight=1)
877
+ G.add_edge("b", "c", weight=-3)
878
+ G.add_edge("c", "d", weight=1)
879
+
880
+ assert nx.bellman_ford_path(G, "a", "d") == ["a", "b", "c", "d"]
881
+ assert nx.bellman_ford_path_length(G, "a", "d") == -1
882
+
883
+ def test_zero_cycle_smoke(self):
884
+ D = nx.DiGraph()
885
+ D.add_weighted_edges_from([(0, 1, 1), (1, 2, 1), (2, 3, 1), (3, 1, -2)])
886
+
887
+ nx.bellman_ford_path(D, 1, 3)
888
+ nx.dijkstra_path(D, 1, 3)
889
+ nx.bidirectional_dijkstra(D, 1, 3)
890
+ # FIXME nx.goldberg_radzik(D, 1)
891
+
892
+ def test_skip_visited_unweighted(self):
893
+ """Check that `goldberg_radzik` correctly skips visited nodes in `topo_sort`.
894
+
895
+ This doesn't reliably get tested by other tests because iterating over
896
+ the `relabeled` set is not deterministic.
897
+ """
898
+ G = nx.Graph([(0, 4), (0, 5), (1, 3), (1, 4), (2, 3), (2, 5), (3, 5), (3, 6)])
899
+
900
+ _, dist = nx.goldberg_radzik(G, 4)
901
+ assert dist == {0: 1, 1: 1, 2: 3, 3: 2, 4: 0, 5: 2, 6: 3}
902
+
903
+
904
+ class TestJohnsonAlgorithm(WeightedTestBase):
905
+ def test_single_node_graph(self):
906
+ G = nx.DiGraph()
907
+ G.add_node(0)
908
+ assert nx.johnson(G) == {0: {0: [0]}}
909
+
910
+ def test_negative_cycle(self):
911
+ G = nx.DiGraph()
912
+ G.add_weighted_edges_from(
913
+ [
914
+ ("0", "3", 3),
915
+ ("0", "1", -5),
916
+ ("1", "0", -5),
917
+ ("0", "2", 2),
918
+ ("1", "2", 4),
919
+ ("2", "3", 1),
920
+ ]
921
+ )
922
+ pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
923
+ G = nx.Graph()
924
+ G.add_weighted_edges_from(
925
+ [
926
+ ("0", "3", 3),
927
+ ("0", "1", -5),
928
+ ("1", "0", -5),
929
+ ("0", "2", 2),
930
+ ("1", "2", 4),
931
+ ("2", "3", 1),
932
+ ]
933
+ )
934
+ pytest.raises(nx.NetworkXUnbounded, nx.johnson, G)
935
+
936
+ def test_negative_weights(self):
937
+ G = nx.DiGraph()
938
+ G.add_weighted_edges_from(
939
+ [("0", "3", 3), ("0", "1", -5), ("0", "2", 2), ("1", "2", 4), ("2", "3", 1)]
940
+ )
941
+ paths = nx.johnson(G)
942
+ assert paths == {
943
+ "1": {"1": ["1"], "3": ["1", "2", "3"], "2": ["1", "2"]},
944
+ "0": {
945
+ "1": ["0", "1"],
946
+ "0": ["0"],
947
+ "3": ["0", "1", "2", "3"],
948
+ "2": ["0", "1", "2"],
949
+ },
950
+ "3": {"3": ["3"]},
951
+ "2": {"3": ["2", "3"], "2": ["2"]},
952
+ }
953
+
954
+ def test_unweighted_graph(self):
955
+ G = nx.Graph()
956
+ G.add_edges_from([(1, 0), (2, 1)])
957
+ H = G.copy()
958
+ nx.set_edge_attributes(H, values=1, name="weight")
959
+ assert nx.johnson(G) == nx.johnson(H)
960
+
961
+ def test_partially_weighted_graph_with_negative_edges(self):
962
+ G = nx.DiGraph()
963
+ G.add_edges_from([(0, 1), (1, 2), (2, 0), (1, 0)])
964
+ G[1][0]["weight"] = -2
965
+ G[0][1]["weight"] = 3
966
+ G[1][2]["weight"] = -4
967
+
968
+ H = G.copy()
969
+ H[2][0]["weight"] = 1
970
+
971
+ I = G.copy()
972
+ I[2][0]["weight"] = 8
973
+
974
+ assert nx.johnson(G) == nx.johnson(H)
975
+ assert nx.johnson(G) != nx.johnson(I)
976
+
977
+ def test_graphs(self):
978
+ validate_path(self.XG, "s", "v", 9, nx.johnson(self.XG)["s"]["v"])
979
+ validate_path(self.MXG, "s", "v", 9, nx.johnson(self.MXG)["s"]["v"])
980
+ validate_path(self.XG2, 1, 3, 4, nx.johnson(self.XG2)[1][3])
981
+ validate_path(self.XG3, 0, 3, 15, nx.johnson(self.XG3)[0][3])
982
+ validate_path(self.XG4, 0, 2, 4, nx.johnson(self.XG4)[0][2])
983
+ validate_path(self.MXG4, 0, 2, 4, nx.johnson(self.MXG4)[0][2])