molstar 4.3.0 → 4.4.1

package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.js

@@ -5,7 +5,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerBackboneSphereMeshVisual = exports.PolymerBackboneSphereImpostorVisual = exports.PolymerBackboneSphereVisual = exports.PolymerBackboneSphereParams = void 0;
+exports.PolymerBackboneSphereParams = void 0;
+exports.PolymerBackboneSphereVisual = PolymerBackboneSphereVisual;
+exports.PolymerBackboneSphereImpostorVisual = PolymerBackboneSphereImpostorVisual;
+exports.PolymerBackboneSphereMeshVisual = PolymerBackboneSphereMeshVisual;
 const param_definition_1 = require("../../../mol-util/param-definition");
 const structure_1 = require("../../../mol-model/structure");
 const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
@@ -32,7 +35,6 @@ function PolymerBackboneSphereVisual(materialId, structure, props, webgl) {
         ? PolymerBackboneSphereImpostorVisual(materialId)
         : PolymerBackboneSphereMeshVisual(materialId);
 }
-exports.PolymerBackboneSphereVisual = PolymerBackboneSphereVisual;
 function createPolymerBackboneSphereImpostor(ctx, unit, structure, theme, props, spheres) {
     const polymerElementCount = unit.polymerElements.length;
     if (!polymerElementCount)
@@ -63,7 +65,6 @@ function PolymerBackboneSphereImpostorVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerBackboneSphereImpostorVisual = PolymerBackboneSphereImpostorVisual;
 function createPolymerBackboneSphereMesh(ctx, unit, structure, theme, props, mesh) {
     const polymerElementCount = unit.polymerElements.length;
     if (!polymerElementCount)
@@ -102,4 +103,3 @@ function PolymerBackboneSphereMeshVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerBackboneSphereMeshVisual = PolymerBackboneSphereMeshVisual;

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts

@@ -20,6 +20,7 @@ export declare const PolymerDirectionParams: {
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
+    celShaded: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
     transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerDirectionVisual = exports.PolymerDirectionParams = exports.DefaultPolymerDirectionWedgeProps = exports.PolymerDirectionWedgeParams = void 0;
+exports.PolymerDirectionParams = exports.DefaultPolymerDirectionWedgeProps = exports.PolymerDirectionWedgeParams = void 0;
+exports.PolymerDirectionVisual = PolymerDirectionVisual;
 const param_definition_1 = require("../../../mol-util/param-definition");
 const linear_algebra_1 = require("../../../mol-math/linear-algebra");
 const wedge_1 = require("../../../mol-geo/primitive/wedge");
@@ -86,4 +87,3 @@ function PolymerDirectionVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerDirectionVisual = PolymerDirectionVisual;

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts

@@ -24,6 +24,7 @@ export declare const PolymerGapParams: {
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
+    celShaded: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
     transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.js

@@ -6,7 +6,8 @@
  * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerGapVisual = exports.PolymerGapParams = exports.DefaultPolymerGapCylinderProps = exports.PolymerGapCylinderParams = void 0;
+exports.PolymerGapParams = exports.DefaultPolymerGapCylinderProps = exports.PolymerGapCylinderParams = void 0;
+exports.PolymerGapVisual = PolymerGapVisual;
 const param_definition_1 = require("../../../mol-util/param-definition");
 const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
 const mesh_builder_1 = require("../../../mol-geo/geometry/mesh/mesh-builder");
@@ -86,4 +87,3 @@ function PolymerGapVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerGapVisual = PolymerGapVisual;

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts

@@ -44,6 +44,7 @@ export declare const PolymerTraceParams: {
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
+    celShaded: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
     transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerTraceVisual = exports.PolymerTraceParams = exports.DefaultPolymerTraceMeshProps = exports.PolymerTraceMeshParams = void 0;
+exports.PolymerTraceParams = exports.DefaultPolymerTraceMeshProps = exports.PolymerTraceMeshParams = void 0;
+exports.PolymerTraceVisual = PolymerTraceVisual;
 const param_definition_1 = require("../../../mol-util/param-definition");
 const structure_1 = require("../../../mol-model/structure");
 const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
@@ -193,4 +194,3 @@ function PolymerTraceVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerTraceVisual = PolymerTraceVisual;

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts

@@ -29,6 +29,7 @@ export declare const PolymerTubeParams: {
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
+    celShaded: PD.BooleanParam;
     xrayShaded: PD.Select<boolean | "inverted">;
     transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
     bumpFrequency: PD.Numeric;

package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.PolymerTubeVisual = exports.PolymerTubeParams = exports.DefaultPolymerTubeMeshProps = exports.PolymerTubeMeshParams = void 0;
+exports.PolymerTubeParams = exports.DefaultPolymerTubeMeshProps = exports.PolymerTubeMeshParams = void 0;
+exports.PolymerTubeVisual = PolymerTubeVisual;
 const param_definition_1 = require("../../../mol-util/param-definition");
 const mesh_1 = require("../../../mol-geo/geometry/mesh/mesh");
 const mesh_builder_1 = require("../../../mol-geo/geometry/mesh/mesh-builder");
@@ -109,4 +110,3 @@ function PolymerTubeVisual(materialId) {
         }
     }, materialId);
 }
-exports.PolymerTubeVisual = PolymerTubeVisual;

package/lib/commonjs/mol-repr/structure/visual/util/bond.js

@@ -7,7 +7,14 @@
  * @author Gianluca Tomasello <giagitom@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.eachInterBond = exports.getInterBondLoci = exports.eachIntraBond = exports.getIntraBondLoci = exports.BondIterator = exports.makeInterBondIgnoreTest = exports.makeIntraBondIgnoreTest = exports.ignoreBondType = exports.DefaultBondLineProps = exports.BondLineParams = exports.DefaultBondCylinderProps = exports.BondCylinderParams = exports.DefaultBondProps = exports.BondParams = void 0;
+exports.BondIterator = exports.DefaultBondLineProps = exports.BondLineParams = exports.DefaultBondCylinderProps = exports.BondCylinderParams = exports.DefaultBondProps = exports.BondParams = void 0;
+exports.ignoreBondType = ignoreBondType;
+exports.makeIntraBondIgnoreTest = makeIntraBondIgnoreTest;
+exports.makeInterBondIgnoreTest = makeInterBondIgnoreTest;
+exports.getIntraBondLoci = getIntraBondLoci;
+exports.eachIntraBond = eachIntraBond;
+exports.getInterBondLoci = getInterBondLoci;
+exports.eachInterBond = eachInterBond;
 const types_1 = require("../../../../mol-model/structure/model/types");
 const structure_1 = require("../../../../mol-model/structure");
 const param_definition_1 = require("../../../../mol-util/param-definition");
@@ -40,7 +47,6 @@ exports.DefaultBondLineProps = param_definition_1.ParamDefinition.getDefaultValu
 function ignoreBondType(include, exclude, f) {
     return !types_1.BondType.is(include, f) || types_1.BondType.is(exclude, f);
 }
-exports.ignoreBondType = ignoreBondType;
 function makeIntraBondIgnoreTest(structure, unit, props) {
     const elements = unit.elements;
     const bonds = unit.bonds;
@@ -72,7 +78,6 @@ function makeIntraBondIgnoreTest(structure, unit, props) {
         return false;
     };
 }
-exports.makeIntraBondIgnoreTest = makeIntraBondIgnoreTest;
 function makeInterBondIgnoreTest(structure, props) {
     const bonds = structure.interUnitBonds;
     const { edges } = bonds;
@@ -108,7 +113,6 @@ function makeInterBondIgnoreTest(structure, props) {
         return false;
     };
 }
-exports.makeInterBondIgnoreTest = makeInterBondIgnoreTest;
 var BondIterator;
 (function (BondIterator) {
     function fromGroup(structureGroup, props) {
@@ -187,7 +191,6 @@ function getIntraBondLoci(pickingId, structureGroup, id) {
     }
     return loci_1.EmptyLoci;
 }
-exports.getIntraBondLoci = getIntraBondLoci;
 function eachIntraBond(loci, structureGroup, apply, isMarking) {
     let changed = false;
     if (structure_1.Bond.isLoci(loci)) {
@@ -236,7 +239,6 @@ function eachIntraBond(loci, structureGroup, apply, isMarking) {
     }
     return changed;
 }
-exports.eachIntraBond = eachIntraBond;
 //
 function getInterBondLoci(pickingId, structure, id) {
     const { objectId, groupId } = pickingId;
@@ -252,7 +254,6 @@ function getInterBondLoci(pickingId, structure, id) {
     }
     return loci_1.EmptyLoci;
 }
-exports.getInterBondLoci = getInterBondLoci;
 const __unitMap = new Map();
 function eachInterBond(loci, structure, apply, isMarking) {
     let changed = false;
@@ -299,4 +300,3 @@ function eachInterBond(loci, structure, apply, isMarking) {
     }
     return changed;
 }
-exports.eachInterBond = eachInterBond;

package/lib/commonjs/mol-repr/structure/visual/util/common.js

@@ -6,7 +6,20 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.isTrace = exports.isH = exports.isHydrogen = exports.getStructureConformationAndRadius = exports.getUnitConformationAndRadius = exports.DefaultCommonSurfaceProps = exports.CommonSurfaceParams = exports.getConformation = exports.ensureReasonableResolution = exports.getVolumeSliceInfo = exports.includesUnitKind = exports.UnitKindOptions = exports.UnitKindInfo = exports.createUnitsTransform = exports.getAltResidueLociFromId = exports.getAltResidueLoci = exports.getResidueLoci = void 0;
+exports.DefaultCommonSurfaceProps = exports.CommonSurfaceParams = exports.UnitKindOptions = exports.UnitKindInfo = void 0;
+exports.getResidueLoci = getResidueLoci;
+exports.getAltResidueLoci = getAltResidueLoci;
+exports.getAltResidueLociFromId = getAltResidueLociFromId;
+exports.createUnitsTransform = createUnitsTransform;
+exports.includesUnitKind = includesUnitKind;
+exports.getVolumeSliceInfo = getVolumeSliceInfo;
+exports.ensureReasonableResolution = ensureReasonableResolution;
+exports.getConformation = getConformation;
+exports.getUnitConformationAndRadius = getUnitConformationAndRadius;
+exports.getStructureConformationAndRadius = getStructureConformationAndRadius;
+exports.isHydrogen = isHydrogen;
+exports.isH = isH;
+exports.isTrace = isTrace;
 const structure_1 = require("../../../../mol-model/structure");
 const linear_algebra_1 = require("../../../../mol-math/linear-algebra");
 const transform_data_1 = require("../../../../mol-geo/geometry/transform-data");
@@ -37,7 +50,6 @@ function getResidueLoci(structure, unit, elementIndex) {
     }
     return loci_1.EmptyLoci;
 }
-exports.getResidueLoci = getResidueLoci;
 /**
  * Return a Loci for the elements of a whole residue the elementIndex belongs to but
  * restrict to elements that have the same label_alt_id or none
@@ -53,7 +65,6 @@ function getAltResidueLoci(structure, unit, elementIndex) {
     }
     return structure_1.StructureElement.Loci(structure, []);
 }
-exports.getAltResidueLoci = getAltResidueLoci;
 function getAltResidueLociFromId(structure, unit, residueIndex, elementAltId) {
     const { elements, model } = unit;
     const { label_alt_id } = model.atomicHierarchy.atoms;
@@ -71,7 +82,6 @@ function getAltResidueLociFromId(structure, unit, residueIndex, elementAltId) {
     const indices = int_1.OrderedSet.ofSortedArray(int_1.SortedArray.ofSortedArray(_indices));
     return structure_1.StructureElement.Loci(structure, [{ unit, indices }]);
 }
-exports.getAltResidueLociFromId = getAltResidueLociFromId;
 function createUnitsTransform(structureGroup, includeParent, invariantBoundingSphere, cellSize, batchSize, transformData) {
     const { child } = structureGroup.structure;
     const units = includeParent && child
@@ -85,7 +95,6 @@ function createUnitsTransform(structureGroup, includeParent, invariantBoundingSp
     }
     return (0, transform_data_1.createTransform)(array, unitCount, invariantBoundingSphere, cellSize, batchSize, transformData);
 }
-exports.createUnitsTransform = createUnitsTransform;
 exports.UnitKindInfo = {
     'atomic': {},
     'spheres': {},
@@ -103,7 +112,6 @@ function includesUnitKind(unitKinds, unit) {
     }
     return false;
 }
-exports.includesUnitKind = includesUnitKind;
 //
 const DefaultMaxCells = 500000000;
 function getVolumeSliceInfo(box, resolution, maxCells = DefaultMaxCells) {
@@ -115,7 +123,6 @@ function getVolumeSliceInfo(box, resolution, maxCells = DefaultMaxCells) {
     const areaCells = Math.ceil(area / (resolution * resolution));
     return { area, areaCells, maxAreaCells };
 }
-exports.getVolumeSliceInfo = getVolumeSliceInfo;
 /**
  * Guard against overly high resolution for the given box size.
  * Internally it uses the largest 2d slice of the box to determine the
@@ -126,7 +133,6 @@ function ensureReasonableResolution(box, props, maxCells = DefaultMaxCells) {
     const resolution = areaCells > maxAreaCells ? Math.sqrt(area / maxAreaCells) : props.resolution;
     return { ...props, resolution };
 }
-exports.ensureReasonableResolution = ensureReasonableResolution;
 function getConformation(unit) {
     switch (unit.kind) {
         case 0 /* Unit.Kind.Atomic */: return unit.model.atomicConformation;
@@ -134,7 +140,6 @@ function getConformation(unit) {
         case 2 /* Unit.Kind.Gaussians */: return unit.model.coarseConformation.gaussians;
     }
 }
-exports.getConformation = getConformation;
 exports.CommonSurfaceParams = {
     ignoreHydrogens: param_definition_1.ParamDefinition.Boolean(false, { description: 'Whether or not to include hydrogen atoms in the surface calculation.' }),
     ignoreHydrogensVariant: param_definition_1.ParamDefinition.Select('all', param_definition_1.ParamDefinition.arrayToOptions(['all', 'non-polar'])),
@@ -205,7 +210,6 @@ function getUnitConformationAndRadius(structure, unit, sizeTheme, props) {
     };
     return { position, boundary, radius };
 }
-exports.getUnitConformationAndRadius = getUnitConformationAndRadius;
 function getStructureConformationAndRadius(structure, sizeTheme, props) {
     const { ignoreHydrogens, ignoreHydrogensVariant, traceOnly, includeParent } = props;
     const differentRoot = includeParent && !!structure.parent;
@@ -294,7 +298,6 @@ function getStructureConformationAndRadius(structure, sizeTheme, props) {
     const radius = (index) => rs[index];
     return { position, boundary, radius };
 }
-exports.getStructureConformationAndRadius = getStructureConformationAndRadius;
 const _H = atomic_1.AtomicNumbers['H'];
 function isHydrogen(structure, unit, element, variant) {
     if (structure_1.Unit.isCoarse(unit))
@@ -310,11 +313,9 @@ function isHydrogen(structure, unit, element, variant) {
         return true;
     return false;
 }
-exports.isHydrogen = isHydrogen;
 function isH(atomicNumber, element) {
     return atomicNumber[element] === _H;
 }
-exports.isH = isH;
 function isTrace(unit, element) {
     if (structure_1.Unit.isCoarse(unit))
         return true;
@@ -323,4 +324,3 @@ function isTrace(unit, element) {
         return true;
     return false;
 }
-exports.isTrace = isTrace;

package/lib/commonjs/mol-repr/structure/visual/util/element.js

@@ -6,7 +6,16 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.ElementIterator = exports.getSerialElementLoci = exports.eachSerialElement = exports.createStructureElementSphereImpostor = exports.createStructureElementSphereMesh = exports.getElementLoci = exports.eachElement = exports.createElementSphereImpostor = exports.createElementSphereMesh = exports.makeElementIgnoreTest = void 0;
+exports.ElementIterator = void 0;
+exports.makeElementIgnoreTest = makeElementIgnoreTest;
+exports.createElementSphereMesh = createElementSphereMesh;
+exports.createElementSphereImpostor = createElementSphereImpostor;
+exports.eachElement = eachElement;
+exports.getElementLoci = getElementLoci;
+exports.createStructureElementSphereMesh = createStructureElementSphereMesh;
+exports.createStructureElementSphereImpostor = createStructureElementSphereImpostor;
+exports.eachSerialElement = eachSerialElement;
+exports.getSerialElementLoci = getSerialElementLoci;
 const linear_algebra_1 = require("../../../../mol-math/linear-algebra");
 const structure_1 = require("../../../../mol-model/structure");
 const loci_1 = require("../../../../mol-model/loci");
@@ -37,7 +46,6 @@ function makeElementIgnoreTest(structure, unit, props) {
             (traceOnly && !(0, common_1.isTrace)(unit, element)));
     };
 }
-exports.makeElementIgnoreTest = makeElementIgnoreTest;
 function createElementSphereMesh(ctx, unit, structure, theme, props, mesh) {
     const { child } = structure;
     const childUnit = child === null || child === void 0 ? void 0 : child.unitMap.get(unit.id);
@@ -86,7 +94,6 @@ function createElementSphereMesh(ctx, unit, structure, theme, props, mesh) {
     m.setBoundingSphere(boundingSphere);
     return m;
 }
-exports.createElementSphereMesh = createElementSphereMesh;
 function createElementSphereImpostor(ctx, unit, structure, theme, props, spheres) {
     const { child } = structure;
     const childUnit = child === null || child === void 0 ? void 0 : child.unitMap.get(unit.id);
@@ -144,7 +151,6 @@ function createElementSphereImpostor(ctx, unit, structure, theme, props, spheres
     s.setBoundingSphere(boundingSphere);
     return s;
 }
-exports.createElementSphereImpostor = createElementSphereImpostor;
 function eachElement(loci, structureGroup, apply) {
     let changed = false;
     if (!structure_1.StructureElement.Loci.is(loci))
@@ -179,7 +185,6 @@ function eachElement(loci, structureGroup, apply) {
     }
     return changed;
 }
-exports.eachElement = eachElement;
 function getElementLoci(pickingId, structureGroup, id) {
     const { objectId, instanceId, groupId } = pickingId;
     if (id === objectId) {
@@ -190,7 +195,6 @@ function getElementLoci(pickingId, structureGroup, id) {
     }
     return loci_1.EmptyLoci;
 }
-exports.getElementLoci = getElementLoci;
 //
 function createStructureElementSphereMesh(ctx, structure, theme, props, mesh) {
     const { child } = structure;
@@ -245,7 +249,6 @@ function createStructureElementSphereMesh(ctx, structure, theme, props, mesh) {
     m.setBoundingSphere(boundingSphere);
     return m;
 }
-exports.createStructureElementSphereMesh = createStructureElementSphereMesh;
 function createStructureElementSphereImpostor(ctx, structure, theme, props, spheres) {
     const { child } = structure;
     const { sizeFactor, stride } = props;
@@ -309,7 +312,6 @@ function createStructureElementSphereImpostor(ctx, structure, theme, props, sphe
     s.setBoundingSphere(boundingSphere);
     return s;
 }
-exports.createStructureElementSphereImpostor = createStructureElementSphereImpostor;
 function eachSerialElement(loci, structure, apply) {
     let changed = false;
     if (!structure_1.StructureElement.Loci.is(loci))
@@ -337,7 +339,6 @@ function eachSerialElement(loci, structure, apply) {
     }
     return changed;
 }
-exports.eachSerialElement = eachSerialElement;
 function getSerialElementLoci(pickingId, structure, id) {
     const { objectId, groupId } = pickingId;
     if (id === objectId) {
@@ -350,7 +351,6 @@ function getSerialElementLoci(pickingId, structure, id) {
     }
     return loci_1.EmptyLoci;
 }
-exports.getSerialElementLoci = getSerialElementLoci;
 //
 var ElementIterator;
 (function (ElementIterator) {

package/lib/commonjs/mol-repr/structure/visual/util/gaussian.js

@@ -5,7 +5,14 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.computeStructureGaussianDensityTexture2d = exports.computeStructureGaussianDensityTexture = exports.computeStructureGaussianDensity = exports.computeUnitGaussianDensityTexture2d = exports.computeUnitGaussianDensityTexture = exports.computeUnitGaussianDensity = exports.getTextureMaxCells = exports.DefaultGaussianDensityProps = exports.GaussianDensityParams = void 0;
+exports.DefaultGaussianDensityProps = exports.GaussianDensityParams = void 0;
+exports.getTextureMaxCells = getTextureMaxCells;
+exports.computeUnitGaussianDensity = computeUnitGaussianDensity;
+exports.computeUnitGaussianDensityTexture = computeUnitGaussianDensityTexture;
+exports.computeUnitGaussianDensityTexture2d = computeUnitGaussianDensityTexture2d;
+exports.computeStructureGaussianDensity = computeStructureGaussianDensity;
+exports.computeStructureGaussianDensityTexture = computeStructureGaussianDensityTexture;
+exports.computeStructureGaussianDensityTexture2d = computeStructureGaussianDensityTexture2d;
 const mol_task_1 = require("../../../../mol-task");
 const param_definition_1 = require("../../../../mol-util/param-definition");
 const gpu_1 = require("../../../../mol-math/geometry/gaussian-density/gpu");
@@ -24,7 +31,6 @@ function getTextureMaxCells(webgl, structure) {
     const d = webgl.maxTextureSize / 3;
     return (d * d) / Math.max(1, (structure ? structure.units.length / 16 : 1));
 }
-exports.getTextureMaxCells = getTextureMaxCells;
 //
 function computeUnitGaussianDensity(structure, unit, sizeTheme, props) {
     const { position, boundary, radius } = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, props);
@@ -33,7 +39,6 @@ function computeUnitGaussianDensity(structure, unit, sizeTheme, props) {
         return await (0, cpu_1.GaussianDensityCPU)(ctx, position, boundary.box, radius, p);
     });
 }
-exports.computeUnitGaussianDensity = computeUnitGaussianDensity;
 function computeUnitGaussianDensityTexture(structure, unit, sizeTheme, props, webgl, texture) {
     const { position, boundary, radius } = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, props);
     const p = (0, common_1.ensureReasonableResolution)(boundary.box, props, getTextureMaxCells(webgl, structure));
@@ -41,7 +46,6 @@ function computeUnitGaussianDensityTexture(structure, unit, sizeTheme, props, we
         return (0, gpu_1.GaussianDensityTexture)(webgl, position, boundary.box, radius, p, texture);
     });
 }
-exports.computeUnitGaussianDensityTexture = computeUnitGaussianDensityTexture;
 function computeUnitGaussianDensityTexture2d(structure, unit, sizeTheme, powerOfTwo, props, webgl, texture) {
     const { position, boundary, radius } = (0, common_1.getUnitConformationAndRadius)(structure, unit, sizeTheme, props);
     const p = (0, common_1.ensureReasonableResolution)(boundary.box, props, getTextureMaxCells(webgl, structure));
@@ -49,7 +53,6 @@ function computeUnitGaussianDensityTexture2d(structure, unit, sizeTheme, powerOf
         return (0, gpu_1.GaussianDensityTexture2d)(webgl, position, boundary.box, radius, powerOfTwo, p, texture);
     });
 }
-exports.computeUnitGaussianDensityTexture2d = computeUnitGaussianDensityTexture2d;
 //
 function computeStructureGaussianDensity(structure, sizeTheme, props) {
     const { position, boundary, radius } = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props);
@@ -58,7 +61,6 @@ function computeStructureGaussianDensity(structure, sizeTheme, props) {
         return await (0, cpu_1.GaussianDensityCPU)(ctx, position, boundary.box, radius, p);
     });
 }
-exports.computeStructureGaussianDensity = computeStructureGaussianDensity;
 function computeStructureGaussianDensityTexture(structure, sizeTheme, props, webgl, texture) {
     const { position, boundary, radius } = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props);
     const p = (0, common_1.ensureReasonableResolution)(boundary.box, props);
@@ -66,7 +68,6 @@ function computeStructureGaussianDensityTexture(structure, sizeTheme, props, web
         return (0, gpu_1.GaussianDensityTexture)(webgl, position, boundary.box, radius, p, texture);
     });
 }
-exports.computeStructureGaussianDensityTexture = computeStructureGaussianDensityTexture;
 function computeStructureGaussianDensityTexture2d(structure, sizeTheme, powerOfTwo, props, webgl, texture) {
     const { box } = structure.lookup3d.boundary;
     const { position, boundary, radius } = (0, common_1.getStructureConformationAndRadius)(structure, sizeTheme, props);
@@ -75,4 +76,3 @@ function computeStructureGaussianDensityTexture2d(structure, sizeTheme, powerOfT
         return (0, gpu_1.GaussianDensityTexture2d)(webgl, position, box, radius, powerOfTwo, p, texture);
     });
 }
-exports.computeStructureGaussianDensityTexture2d = computeStructureGaussianDensityTexture2d;

package/lib/commonjs/mol-repr/structure/visual/util/link.js

@@ -8,7 +8,11 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.createLinkLines = exports.createLinkCylinderImpostors = exports.createLinkCylinderMesh = exports.calculateShiftDir = exports.DefaultLinkLineProps = exports.LinkLineParams = exports.DefaultLinkCylinderProps = exports.LinkCylinderParams = void 0;
+exports.DefaultLinkLineProps = exports.LinkLineParams = exports.DefaultLinkCylinderProps = exports.LinkCylinderParams = void 0;
+exports.calculateShiftDir = calculateShiftDir;
+exports.createLinkCylinderMesh = createLinkCylinderMesh;
+exports.createLinkCylinderImpostors = createLinkCylinderImpostors;
+exports.createLinkLines = createLinkLines;
 const linear_algebra_1 = require("../../../../mol-math/linear-algebra");
 const param_definition_1 = require("../../../../mol-util/param-definition");
 const mesh_1 = require("../../../../mol-geo/geometry/mesh/mesh");
@@ -70,7 +74,6 @@ function calculateShiftDir(out, v1, v2, v3) {
     linear_algebra_1.Vec3.sub(tmpShiftV13, tmpShiftV13, tmpShiftV12);
     return linear_algebra_1.Vec3.normalize(out, tmpShiftV13);
 }
-exports.calculateShiftDir = calculateShiftDir;
 // avoiding namespace lookup improved performance in Chrome (Aug 2020)
 const v3scale = linear_algebra_1.Vec3.scale;
 const v3add = linear_algebra_1.Vec3.add;
@@ -206,7 +209,6 @@ function createLinkCylinderMesh(ctx, linkBuilder, props, mesh) {
         return { mesh: m };
     }
 }
-exports.createLinkCylinderMesh = createLinkCylinderMesh;
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
@@ -305,7 +307,6 @@ function createLinkCylinderImpostors(ctx, linkBuilder, props, cylinders) {
         return { cylinders: c };
     }
 }
-exports.createLinkCylinderImpostors = createLinkCylinderImpostors;
 /**
  * Each edge is included twice to allow for coloring/picking
  * the half closer to the first vertex, i.e. vertex a.
@@ -402,4 +403,3 @@ function createLinkLines(ctx, linkBuilder, props, lines) {
         return { lines: l };
     }
 }
-exports.createLinkLines = createLinkLines;

package/lib/commonjs/mol-repr/structure/visual/util/molecular-surface.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.computeStructureMolecularSurface = exports.computeUnitMolecularSurface = void 0;
+exports.computeUnitMolecularSurface = computeUnitMolecularSurface;
+exports.computeStructureMolecularSurface = computeStructureMolecularSurface;
 const mol_task_1 = require("../../../../mol-task");
 const common_1 = require("./common");
 const molecular_surface_1 = require("../../../../mol-math/geometry/molecular-surface");
@@ -33,7 +34,6 @@ function computeUnitMolecularSurface(structure, unit, sizeTheme, props) {
         return await MolecularSurface(ctx, position, boundary, maxRadius, boundary.box, p);
     });
 }
-exports.computeUnitMolecularSurface = computeUnitMolecularSurface;
 //
 function getStructurePositionDataAndMaxRadius(structure, sizeTheme, props) {
     const { probeRadius } = props;
@@ -58,7 +58,6 @@ function computeStructureMolecularSurface(structure, sizeTheme, props) {
         return await MolecularSurface(ctx, position, boundary, maxRadius, boundary.box, p);
     });
 }
-exports.computeStructureMolecularSurface = computeStructureMolecularSurface;
 //
 async function MolecularSurface(ctx, position, boundary, maxRadius, box, props) {
     return (0, molecular_surface_1.calcMolecularSurface)(ctx, position, boundary, maxRadius, box, props);