molstar 4.3.0 → 4.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +197 -197
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +129 -129
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -9
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/apps/mesoscale-explorer/app.js +12 -1
- package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
- package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
- package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
- package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/apps/mesoscale-explorer/data/state.js +83 -8
- package/lib/apps/mesoscale-explorer/index.html +106 -101
- package/lib/apps/mesoscale-explorer/style.scss +66 -33
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
- package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
- package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
- package/lib/apps/viewer/app.d.ts +10 -4
- package/lib/apps/viewer/app.js +28 -0
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +129 -129
- package/lib/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/cli/cifschema/util/generate.js +12 -12
- package/lib/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
- package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
- package/lib/commonjs/apps/viewer/app.d.ts +10 -4
- package/lib/commonjs/apps/viewer/app.js +28 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
- package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
- package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
- package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
- package/lib/commonjs/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
- package/lib/commonjs/cli/structure-info/helpers.js +2 -3
- package/lib/commonjs/cli/structure-info/model.js +11 -12
- package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +2 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
- package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/behavior.js +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
- package/lib/commonjs/extensions/g3d/data.js +2 -3
- package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
- package/lib/commonjs/extensions/g3d/model.js +5 -5
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
- package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/commonjs/extensions/meshes/examples.js +9 -9
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
- package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
- package/lib/commonjs/extensions/model-export/export.js +2 -2
- package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
- package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mvs/camera.js +4 -5
- package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
- package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
- package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
- package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
- package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
- package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
- package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
- package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
- package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
- package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
- package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
- package/lib/commonjs/extensions/mvs/load.js +1 -2
- package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
- package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
- package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
- package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
- package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
- package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
- package/lib/commonjs/mol-canvas3d/util.js +3 -4
- package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
- package/lib/commonjs/mol-data/db/column.d.ts +1 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
- package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
- package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
- package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
- package/lib/commonjs/mol-data/int/linked-index.js +1 -2
- package/lib/commonjs/mol-data/util/array.js +5 -6
- package/lib/commonjs/mol-data/util/buckets.js +1 -2
- package/lib/commonjs/mol-data/util/combination.js +2 -2
- package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
- package/lib/commonjs/mol-data/util/grouping.js +2 -3
- package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
- package/lib/commonjs/mol-data/util/sort.js +5 -6
- package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.js +3 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
- package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
- package/lib/commonjs/mol-geo/primitive/box.js +3 -4
- package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
- package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
- package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
- package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
- package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
- package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
- package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
- package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
- package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
- package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
- package/lib/commonjs/mol-geo/primitive/star.js +2 -2
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
- package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
- package/lib/commonjs/mol-geo/util/location-iterator.js +3 -4
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +3 -3
- package/lib/commonjs/mol-geo/util.js +7 -8
- package/lib/commonjs/mol-gl/compute/grid3d.js +2 -3
- package/lib/commonjs/mol-gl/compute/hi-z.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +2 -3
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +2 -3
- package/lib/commonjs/mol-gl/compute/util.js +5 -5
- package/lib/commonjs/mol-gl/render-object.js +3 -3
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -2
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -2
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- package/lib/mol-gl/shader/spheres.frag.js +148 -148
- package/lib/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +1 -1
- package/lib/mol-gl/shader/ssao-blur.frag.js +100 -97
- package/lib/mol-gl/shader/ssao.frag.js +211 -211
- package/lib/mol-gl/shader/text.frag.js +85 -85
- package/lib/mol-gl/shader/text.vert.js +85 -85
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/mol-gl/shader-code.js +16 -16
- package/lib/mol-gl/webgl/compat.js +12 -12
- package/lib/mol-gl/webgl/render-item.d.ts +2 -2
- package/lib/mol-io/common/simple-buffer.d.ts +0 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +9 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +9 -1
- package/lib/mol-io/reader/common/text/column/fixed.d.ts +1 -1
- package/lib/mol-io/reader/common/text/column/token.d.ts +1 -1
- package/lib/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/mol-model/loci.d.ts +1 -1
- package/lib/mol-model/sequence/alignment/alignment.d.ts +2 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +3 -3
- package/lib/mol-model/structure/query/queries/generators.js +2 -2
- package/lib/mol-model/structure/structure/properties.d.ts +1 -0
- package/lib/mol-model/structure/structure/properties.js +1 -0
- package/lib/mol-model/volume/volume.d.ts +6 -6
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/schema.d.ts +1 -0
- package/lib/mol-model-formats/structure/common/entity.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-model-props/sequence/themes/sifts-mapping.d.ts +2 -2
- package/lib/mol-plugin/behavior/behavior.d.ts +9 -9
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +3 -3
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +4 -4
- package/lib/mol-plugin/commands.d.ts +23 -87
- package/lib/mol-plugin/context.d.ts +3 -2
- package/lib/mol-plugin/context.js +4 -2
- package/lib/mol-plugin/state.d.ts +7 -7
- package/lib/mol-plugin/util/headless-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/headless-screenshot.js +3 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.js +2 -1
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/actions/volume.js +4 -12
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/mol-plugin-state/formats/registry.d.ts +1 -1
- package/lib/mol-plugin-state/formats/trajectory.d.ts +9 -9
- package/lib/mol-plugin-state/formats/volume.d.ts +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy.d.ts +3 -3
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +4 -0
- package/lib/mol-plugin-state/objects.d.ts +97 -97
- package/lib/mol-plugin-state/transforms/data.d.ts +10 -1
- package/lib/mol-plugin-state/transforms/data.js +30 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/base.js +2 -1
- package/lib/mol-plugin-ui/controls/icons.d.ts +5 -0
- package/lib/mol-plugin-ui/controls/icons.js +10 -0
- package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -3
- package/lib/mol-plugin-ui/controls.js +1 -1
- package/lib/mol-plugin-ui/left-panel.d.ts +0 -1
- package/lib/mol-plugin-ui/plugin.js +3 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +451 -445
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/spec.d.ts +10 -10
- package/lib/mol-plugin-ui/spec.js +1 -1
- package/lib/mol-plugin-ui/state/apply-action.d.ts +1 -1
- package/lib/mol-plugin-ui/state/update-transform.d.ts +1 -1
- package/lib/mol-plugin-ui/structure/quick-styles.d.ts +2 -1
- package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
- package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
- package/lib/mol-repr/representation.d.ts +3 -3
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
- package/lib/mol-repr/structure/params.d.ts +5 -0
- package/lib/mol-repr/structure/registry.d.ts +11 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +5 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
- package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
- package/lib/mol-repr/volume/isosurface.d.ts +95 -90
- package/lib/mol-repr/volume/registry.d.ts +63 -60
- package/lib/mol-repr/volume/segment.d.ts +80 -75
- package/lib/mol-repr/volume/slice.d.ts +45 -45
- package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
- package/lib/mol-state/object.d.ts +4 -4
- package/lib/mol-state/state.d.ts +4 -4
- package/lib/mol-state/transform.d.ts +1 -1
- package/lib/mol-state/transformer.d.ts +1 -1
- package/lib/mol-task/util/scheduler.d.ts +0 -1
- package/lib/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/mol-theme/color/element-index.d.ts +2 -2
- package/lib/mol-theme/color/entity-id.d.ts +2 -2
- package/lib/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/mol-theme/color/model-index.d.ts +2 -2
- package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/mol-theme/color/structure-index.d.ts +2 -2
- package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
- package/lib/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/mol-theme/color/volume-segment.d.ts +2 -2
- package/lib/mol-theme/color.d.ts +16 -16
- package/lib/mol-theme/theme.d.ts +3 -3
- package/lib/mol-util/color/palette.d.ts +4 -3
- package/lib/mol-util/color/scale.d.ts +2 -1
- package/lib/mol-util/data-source.d.ts +0 -1
- package/lib/mol-util/nodejs-shims.d.ts +1 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/servers/model/config.d.ts +4 -4
- package/lib/servers/model/utils/tar.d.ts +0 -1
- package/lib/servers/volume/common/binary-schema.d.ts +0 -1
- package/lib/servers/volume/common/data-format.d.ts +0 -1
- package/lib/servers/volume/config.d.ts +1 -5
- package/lib/servers/volume/config.js +5 -5
- package/package.json +197 -196
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$standard-bottom-height: 8 * ($row-height + 1) + 3 * $control-spacing + 1;
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$standard-top-height: 3 * $row-height + 1;
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$color-accent-cyan: color-lower-contrast(#95a5a6, 15%);
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$color-accent-red: color-lower-contrast(#e74c3c, 15%);
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$color-accent-green: color-lower-contrast(#2ecc71, 10%);
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$color-accent-purple: color-lower-contrast(#9b59b6, 10%);
|
|
32
|
+
$color-accent-blue: color-lower-contrast(#3498db, 5%);
|
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33
|
+
$color-accent-orange: color-lower-contrast(#e67e22, 5%);
|
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34
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+
|
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35
|
+
// TypeClass = 'Root' | 'Group' | 'Data' | 'Object' | 'Representation3D' | 'Behavior'
|
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36
|
+
|
|
37
|
+
$type-class-Root: $default-background;
|
|
38
|
+
$type-class-Data: color-lower-contrast(#95a5a6, 15%);
|
|
39
|
+
$type-class-Object: color-lower-contrast(#2ecc71, 10%);
|
|
40
|
+
$type-class-Behavior: color-lower-contrast(#9b59b6, 10%);
|
|
41
|
+
$type-class-Representation3D: color-lower-contrast(#3498db, 5%);
|
|
42
|
+
$type-class-Group: color-lower-contrast(#e67e22, 5%);
|
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43
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+
|
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44
|
+
//////////////////////////////////////////////////
|
|
45
|
+
// COLORS and COMPUTED COLORS
|
|
46
|
+
|
|
47
|
+
$slider-disabledColor: #ccc;
|
|
48
|
+
|
|
49
|
+
$control-background: color-increase-contrast($default-background, 6.5%);
|
|
50
|
+
$border-color: color-increase-contrast($default-background, 15%);
|
|
51
|
+
$msp-form-control-background: color-lower-contrast($default-background, 2.5%);
|
|
52
|
+
|
|
53
|
+
// buttons
|
|
54
|
+
$msp-btn-link-font-color: $font-color;
|
|
55
|
+
$msp-btn-link-toggle-on-font-color: $font-color;
|
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56
|
+
$msp-btn-link-toggle-off-font-color: color-lower-contrast($font-color, 33%);
|
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57
|
+
|
|
58
|
+
// used for "actions" -- i.e. + in selection
|
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59
|
+
$msp-btn-remove-font-color: $font-color;
|
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60
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+
|
|
61
|
+
$msp-btn-action-background: $msp-form-control-background;
|
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62
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+
|
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63
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+
// update selection etc
|
|
64
|
+
//!! $msp-btn-commit-on-font-color: $entity-current-font-color;
|
|
65
|
+
$msp-btn-commit-on-hover-font-color: color-lower-contrast($msp-btn-commit-on-font-color, 20%); //!!Change
|
|
66
|
+
$msp-btn-commit-on-background: color-lower-contrast($default-background, 2%);
|
|
67
|
+
$msp-btn-commit-off-background: color-lower-contrast($default-background, 4%); //$control-background;
|
|
68
|
+
$msp-btn-commit-off-font-color: $font-color;
|
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69
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+
|
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70
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+
// log
|
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71
|
+
$log-font-color: color-lower-contrast($font-color, 5%);
|
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72
|
+
$log-timestamp-font-color: color-lower-contrast($font-color, 20%);
|
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73
|
+
|
|
74
|
+
// highlight
|
|
75
|
+
$highlight-info-font-color: $hover-font-color;
|
|
76
|
+
$highlight-info-additional-font-color: color-lower-contrast($hover-font-color, 20%);
|
|
77
|
+
|
|
78
|
+
// entity state
|
|
79
|
+
$entity-color-fully-visible: $font-color;
|
|
80
|
+
$entity-color-not-visible: color-lower-contrast($font-color, 66%);
|
|
81
|
+
$entity-color-partialy-visible: color-lower-contrast($font-color, 33%);
|
|
82
|
+
$entity-tag-color: color-lower-contrast($font-color, 20%);
|
|
83
|
+
|
|
84
|
+
// sequence
|
|
85
|
+
$sequence-background: $default-background;
|
|
86
|
+
$sequence-number-color: $hover-font-color;
|
|
87
|
+
|
|
88
|
+
// state
|
|
89
89
|
$state-image-height: 96px;
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
@import 'colors/blue';
|
|
1
|
+
@import 'colors/blue';
|
|
2
2
|
@import 'base/base';
|
|
@@ -1,24 +1,24 @@
|
|
|
1
|
-
$default-background: #2D3E50;
|
|
2
|
-
$font-color: #EDF1F2;
|
|
3
|
-
$hover-font-color: #3B9AD9;
|
|
4
|
-
$entity-current-font-color: #FFFFFF;
|
|
5
|
-
$msp-btn-remove-background: #BF3A31;
|
|
6
|
-
$msp-btn-remove-hover-font-color:#ffffff;
|
|
7
|
-
$msp-btn-commit-on-font-color: #ffffff;
|
|
8
|
-
$entity-badge-font-color: #ccd4e0;
|
|
9
|
-
|
|
10
|
-
// used in LOG
|
|
11
|
-
$log-message: #0CCA5D;
|
|
12
|
-
$log-info: #5E3673;
|
|
13
|
-
$log-warning: #FCC937;
|
|
14
|
-
$log-error: #FD354B;
|
|
15
|
-
|
|
16
|
-
$logo-background: rgba(0,0,0,0.75);
|
|
17
|
-
|
|
18
|
-
@function color-lower-contrast($color, $amount) {
|
|
19
|
-
@return darken($color, $amount);
|
|
20
|
-
}
|
|
21
|
-
|
|
22
|
-
@function color-increase-contrast($color, $amount) {
|
|
23
|
-
@return lighten($color, $amount);
|
|
1
|
+
$default-background: #2D3E50;
|
|
2
|
+
$font-color: #EDF1F2;
|
|
3
|
+
$hover-font-color: #3B9AD9;
|
|
4
|
+
$entity-current-font-color: #FFFFFF;
|
|
5
|
+
$msp-btn-remove-background: #BF3A31;
|
|
6
|
+
$msp-btn-remove-hover-font-color:#ffffff;
|
|
7
|
+
$msp-btn-commit-on-font-color: #ffffff;
|
|
8
|
+
$entity-badge-font-color: #ccd4e0;
|
|
9
|
+
|
|
10
|
+
// used in LOG
|
|
11
|
+
$log-message: #0CCA5D;
|
|
12
|
+
$log-info: #5E3673;
|
|
13
|
+
$log-warning: #FCC937;
|
|
14
|
+
$log-error: #FD354B;
|
|
15
|
+
|
|
16
|
+
$logo-background: rgba(0,0,0,0.75);
|
|
17
|
+
|
|
18
|
+
@function color-lower-contrast($color, $amount) {
|
|
19
|
+
@return darken($color, $amount);
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
@function color-increase-contrast($color, $amount) {
|
|
23
|
+
@return lighten($color, $amount);
|
|
24
24
|
}
|
|
@@ -1,24 +1,24 @@
|
|
|
1
|
-
$default-background: #111318;
|
|
2
|
-
$font-color: #ccd4e0;
|
|
3
|
-
$hover-font-color: #51A2FB;
|
|
4
|
-
$entity-current-font-color: #68BEFD;
|
|
5
|
-
$msp-btn-remove-background: #DE0A28;
|
|
6
|
-
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
7
|
-
$msp-btn-commit-on-font-color: #68BEFD;
|
|
8
|
-
$entity-badge-font-color: #ccd4e0;
|
|
9
|
-
|
|
10
|
-
// used in LOG
|
|
11
|
-
$log-message: #0CCA5D;
|
|
12
|
-
$log-info: #5E3673;
|
|
13
|
-
$log-warning: #FCC937;
|
|
14
|
-
$log-error: #FD354B;
|
|
15
|
-
|
|
16
|
-
$logo-background: rgba(0,0,0,0.75);
|
|
17
|
-
|
|
18
|
-
@function color-lower-contrast($color, $amount) {
|
|
19
|
-
@return darken($color, $amount);
|
|
20
|
-
}
|
|
21
|
-
|
|
22
|
-
@function color-increase-contrast($color, $amount) {
|
|
23
|
-
@return lighten($color, $amount);
|
|
1
|
+
$default-background: #111318;
|
|
2
|
+
$font-color: #ccd4e0;
|
|
3
|
+
$hover-font-color: #51A2FB;
|
|
4
|
+
$entity-current-font-color: #68BEFD;
|
|
5
|
+
$msp-btn-remove-background: #DE0A28;
|
|
6
|
+
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
7
|
+
$msp-btn-commit-on-font-color: #68BEFD;
|
|
8
|
+
$entity-badge-font-color: #ccd4e0;
|
|
9
|
+
|
|
10
|
+
// used in LOG
|
|
11
|
+
$log-message: #0CCA5D;
|
|
12
|
+
$log-info: #5E3673;
|
|
13
|
+
$log-warning: #FCC937;
|
|
14
|
+
$log-error: #FD354B;
|
|
15
|
+
|
|
16
|
+
$logo-background: rgba(0,0,0,0.75);
|
|
17
|
+
|
|
18
|
+
@function color-lower-contrast($color, $amount) {
|
|
19
|
+
@return darken($color, $amount);
|
|
20
|
+
}
|
|
21
|
+
|
|
22
|
+
@function color-increase-contrast($color, $amount) {
|
|
23
|
+
@return lighten($color, $amount);
|
|
24
24
|
}
|
|
@@ -1,30 +1,30 @@
|
|
|
1
|
-
// this is complement of the dark theme
|
|
2
|
-
|
|
3
|
-
@function compl($color) {
|
|
4
|
-
@return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
|
|
5
|
-
}
|
|
6
|
-
|
|
7
|
-
$default-background: compl(#111318);
|
|
8
|
-
$font-color: compl(#ccd4e0);
|
|
9
|
-
$hover-font-color: compl(#51A2FB);
|
|
10
|
-
$entity-current-font-color: compl(#68BEFD);
|
|
11
|
-
$msp-btn-commit-on-font-color: compl(#68BEFD);
|
|
12
|
-
$entity-badge-font-color: lighten(#ccd4e0,10%);
|
|
13
|
-
$msp-btn-remove-background: #DE0A28;
|
|
14
|
-
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
15
|
-
|
|
16
|
-
// used in LOG
|
|
17
|
-
$log-message: #0CCA5D;
|
|
18
|
-
$log-info: #5E3673;
|
|
19
|
-
$log-warning: #FCC937;
|
|
20
|
-
$log-error: #FD354B;
|
|
21
|
-
|
|
22
|
-
$logo-background: compl(#111318);
|
|
23
|
-
|
|
24
|
-
@function color-lower-contrast($color, $amount) {
|
|
25
|
-
@return lighten($color, $amount);
|
|
26
|
-
}
|
|
27
|
-
|
|
28
|
-
@function color-increase-contrast($color, $amount) {
|
|
29
|
-
@return darken($color, $amount);
|
|
1
|
+
// this is complement of the dark theme
|
|
2
|
+
|
|
3
|
+
@function compl($color) {
|
|
4
|
+
@return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
|
|
5
|
+
}
|
|
6
|
+
|
|
7
|
+
$default-background: compl(#111318);
|
|
8
|
+
$font-color: compl(#ccd4e0);
|
|
9
|
+
$hover-font-color: compl(#51A2FB);
|
|
10
|
+
$entity-current-font-color: compl(#68BEFD);
|
|
11
|
+
$msp-btn-commit-on-font-color: compl(#68BEFD);
|
|
12
|
+
$entity-badge-font-color: lighten(#ccd4e0,10%);
|
|
13
|
+
$msp-btn-remove-background: #DE0A28;
|
|
14
|
+
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
15
|
+
|
|
16
|
+
// used in LOG
|
|
17
|
+
$log-message: #0CCA5D;
|
|
18
|
+
$log-info: #5E3673;
|
|
19
|
+
$log-warning: #FCC937;
|
|
20
|
+
$log-error: #FD354B;
|
|
21
|
+
|
|
22
|
+
$logo-background: compl(#111318);
|
|
23
|
+
|
|
24
|
+
@function color-lower-contrast($color, $amount) {
|
|
25
|
+
@return lighten($color, $amount);
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
@function color-increase-contrast($color, $amount) {
|
|
29
|
+
@return darken($color, $amount);
|
|
30
30
|
}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
@import 'colors/dark';
|
|
1
|
+
@import 'colors/dark';
|
|
2
2
|
@import 'base/base';
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
@import 'colors/light';
|
|
1
|
+
@import 'colors/light';
|
|
2
2
|
@import 'base/base';
|
|
@@ -1,10 +1,9 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
*/
|
|
7
|
-
/// <reference types="react" />
|
|
8
7
|
import { StateTransformParameters } from '../mol-plugin-ui/state/common';
|
|
9
8
|
import { PluginSpec } from '../mol-plugin/spec';
|
|
10
9
|
import { StateAction, StateTransformer } from '../mol-state';
|
|
@@ -14,13 +13,14 @@ interface PluginUISpec extends PluginSpec {
|
|
|
14
13
|
components?: {
|
|
15
14
|
controls?: PluginUISpec.LayoutControls;
|
|
16
15
|
remoteState?: 'none' | 'default';
|
|
17
|
-
structureTools?: React.ComponentClass;
|
|
16
|
+
structureTools?: React.ComponentClass | React.FC;
|
|
18
17
|
viewport?: {
|
|
19
|
-
view?: React.ComponentClass;
|
|
20
|
-
controls?: React.ComponentClass;
|
|
18
|
+
view?: React.ComponentClass | React.FC;
|
|
19
|
+
controls?: React.ComponentClass | React.FC;
|
|
20
|
+
snapshotDescription?: React.ComponentClass | React.FC;
|
|
21
21
|
};
|
|
22
22
|
sequenceViewer?: {
|
|
23
|
-
view?: React.ComponentClass;
|
|
23
|
+
view?: React.ComponentClass | React.FC;
|
|
24
24
|
};
|
|
25
25
|
hideTaskOverlay?: boolean;
|
|
26
26
|
disableDragOverlay?: boolean;
|
|
@@ -28,10 +28,10 @@ interface PluginUISpec extends PluginSpec {
|
|
|
28
28
|
}
|
|
29
29
|
declare namespace PluginUISpec {
|
|
30
30
|
interface LayoutControls {
|
|
31
|
-
top?: React.ComponentClass | 'none';
|
|
32
|
-
left?: React.ComponentClass | 'none';
|
|
33
|
-
right?: React.ComponentClass | 'none';
|
|
34
|
-
bottom?: React.ComponentClass | 'none';
|
|
31
|
+
top?: React.ComponentClass | React.FC | 'none';
|
|
32
|
+
left?: React.ComponentClass | React.FC | 'none';
|
|
33
|
+
right?: React.ComponentClass | React.FC | 'none';
|
|
34
|
+
bottom?: React.ComponentClass | React.FC | 'none';
|
|
35
35
|
}
|
|
36
36
|
}
|
|
37
37
|
export declare const DefaultPluginUISpec: () => PluginUISpec;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
@@ -37,7 +37,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
|
|
|
37
37
|
getTransformerId(): import("../../mol-state").StateTransformer.Id;
|
|
38
38
|
getHeader(): "none" | {
|
|
39
39
|
readonly name: string;
|
|
40
|
-
readonly description?: string
|
|
40
|
+
readonly description?: string;
|
|
41
41
|
};
|
|
42
42
|
canApply(): boolean;
|
|
43
43
|
canAutoApply(): boolean;
|
|
@@ -30,7 +30,7 @@ declare class UpdateTransformControl extends TransformControlBase<UpdateTransfor
|
|
|
30
30
|
getTransformerId(): StateTransformer.Id;
|
|
31
31
|
getHeader(): "none" | {
|
|
32
32
|
readonly name: string;
|
|
33
|
-
readonly description?: string
|
|
33
|
+
readonly description?: string;
|
|
34
34
|
};
|
|
35
35
|
canApply(): boolean;
|
|
36
36
|
applyText(): "Update" | "Nothing to Update";
|
|
@@ -1,7 +1,8 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2022-
|
|
2
|
+
* Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
|
+
* @author David Sehnal <david.sehnal@gmail.com>
|
|
5
6
|
*/
|
|
6
7
|
import { CollapsableControls, PurePluginUIComponent } from '../base';
|
|
7
8
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import { MagicWandSvg } from '../controls/icons';
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import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
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/**
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* Copyright (c) 2022-
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* Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
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*
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* @author Alexander Rose <alexander.rose@weirdbyte.de>
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* @author David Sehnal <david.sehnal@gmail.com>
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*/
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import { PresetStructureRepresentations } from '../../mol-plugin-state/builder/structure/representation-preset';
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import { Color } from '../../mol-util/color';
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@@ -61,6 +62,7 @@ export class QuickStyles extends PurePluginUIComponent {
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radius: 5,
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bias: 0.8,
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blurKernelSize: 15,
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blurDepthBias: 0.5,
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samples: 32,
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resolutionScale: 1,
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color: Color(0x000000),
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radius: 5,
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bias: 0.8,
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blurKernelSize: 15,
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blurDepthBias: 0.5,
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samples: 32,
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resolutionScale: 1,
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color: Color(0x000000),
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@@ -108,6 +111,6 @@ export class QuickStyles extends PurePluginUIComponent {
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}
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}
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render() {
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return _jsxs("div", { className: 'msp-flex-row', children: [_jsx(Button, { noOverflow: true, title: 'Applies default representation preset
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return _jsxs("div", { className: 'msp-flex-row', children: [_jsx(Button, { noOverflow: true, title: 'Applies default representation preset and sets outline and occlusion effects to default', onClick: () => this.default(), style: { width: 'auto' }, children: "Default" }), _jsx(Button, { noOverflow: true, title: 'Applies illustrative representation preset and Stylize it', onClick: () => this.illustrative(), style: { width: 'auto' }, children: "Illustrative" }), _jsx(Button, { noOverflow: true, title: 'Does not change representation, enables outline and occlusion effects, enables ignore-light representation parameter', onClick: () => this.stylized(), style: { width: 'auto' }, children: "Stylize Current" })] });
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}
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}
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@@ -29,8 +29,8 @@ interface StructureSelectionActionsControlsState {
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}
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export declare class StructureSelectionActionsControls extends PluginUIComponent<{}, StructureSelectionActionsControlsState> {
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state: {
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action: "
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helper: "
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action: StructureSelectionActionsControlsState["action"];
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helper: StructureSelectionActionsControlsState["helper"];
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isEmpty: boolean;
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isBusy: boolean;
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canUndo: boolean;
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private _name;
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get default(): {
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name: string;
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provider: RepresentationProvider<D, any, any
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provider: RepresentationProvider<D, any, any>;
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};
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get types(): [string, string][];
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constructor();
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get<P extends PD.Params>(name: string): RepresentationProvider<D, P, S>;
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get list(): {
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name: string;
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provider: RepresentationProvider<D, any, any
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provider: RepresentationProvider<D, any, any>;
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}[];
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getApplicableList(data: D): {
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name: string;
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provider: RepresentationProvider<D, any, any
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provider: RepresentationProvider<D, any, any>;
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}[];
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getApplicableTypes(data: D): [string, string][];
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clear(): void;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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sizeFactor: PD.Numeric;
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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solidInterior: PD.BooleanParam;
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sizeAspectRatio: PD.Numeric;
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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solidInterior: PD.BooleanParam;
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unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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includeParent: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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controlPoints: PD.LineGraph;
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stepsPerCell: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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sizeFactor: PD.Numeric;
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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solidInterior: PD.BooleanParam;
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@@ -93,6 +95,7 @@ export declare const StructureCylindersParams: {
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sizeAspectRatio: PD.Numeric;
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doubleSided: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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solidInterior: PD.BooleanParam;
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@@ -224,6 +227,7 @@ export declare const StructureTextParams: {
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export type StructureTextParams = typeof StructureTextParams;
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export declare const StructureDirectVolumeParams: {
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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controlPoints: PD.LineGraph;
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stepsPerCell: PD.Numeric;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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