molstar 4.3.0 → 4.4.1

package/lib/commonjs/mol-gl/webgl/timer.js

@@ -5,7 +5,8 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.printTimerResults = exports.createTimer = void 0;
+exports.createTimer = createTimer;
+exports.printTimerResults = printTimerResults;
 const now_1 = require("../../mol-util/now");
 function movingAverage(avg, sample, count) {
     avg -= avg / count;
@@ -238,7 +239,6 @@ function createTimer(gl, extensions, stats, options) {
         }
     };
 }
-exports.createTimer = createTimer;
 function formatTimerResult(result) {
     const gpu = `${(result.gpuElapsed / 1000 / 1000).toFixed(2)}`;
     const gpuAvg = `${(result.gpuAvg / 1000 / 1000).toFixed(2)}`;
@@ -261,4 +261,3 @@ function printTimerResults(results) {
         }
     });
 }
-exports.printTimerResults = printTimerResults;

package/lib/commonjs/mol-gl/webgl/uniform.js

@@ -5,7 +5,12 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.cloneUniformValues = exports.isUniformValueScalar = exports.getUniformGlslType = exports.getUniformSetters = exports.isArrayUniform = exports.getUniformType = void 0;
+exports.getUniformType = getUniformType;
+exports.isArrayUniform = isArrayUniform;
+exports.getUniformSetters = getUniformSetters;
+exports.getUniformGlslType = getUniformGlslType;
+exports.isUniformValueScalar = isUniformValueScalar;
+exports.cloneUniformValues = cloneUniformValues;
 const mol_util_1 = require("../../mol-util");
 const object_1 = require("../../mol-util/object");
 function getUniformType(gl, kind) {
@@ -35,11 +40,9 @@ function getUniformType(gl, kind) {
         default: console.error(`unknown uniform kind '${kind}'`);
     }
 }
-exports.getUniformType = getUniformType;
 function isArrayUniform(kind) {
     return kind.endsWith('[]');
 }
-exports.isArrayUniform = isArrayUniform;
 function uniform1f(gl, location, value) { gl.uniform1f(location, value); }
 function uniform1fv(gl, location, value) { gl.uniform1fv(location, value); }
 function uniform1i(gl, location, value) { gl.uniform1i(location, value); }
@@ -93,7 +96,6 @@ function getUniformSetters(schema) {
     });
     return setters;
 }
-exports.getUniformSetters = getUniformSetters;
 function getUniformGlslType(kind) {
     switch (kind) {
         case 'f': return 'float';
@@ -108,7 +110,6 @@ function getUniformGlslType(kind) {
     }
     throw new Error(`${kind} has no primitive GLSL type.`);
 }
-exports.getUniformGlslType = getUniformGlslType;
 function isUniformValueScalar(kind) {
     switch (kind) {
         case 'f':
@@ -119,7 +120,6 @@ function isUniformValueScalar(kind) {
             return false;
     }
 }
-exports.isUniformValueScalar = isUniformValueScalar;
 function cloneUniformValues(uniformValues) {
     const clonedValues = {};
     Object.keys(uniformValues).forEach(k => {
@@ -127,4 +127,3 @@ function cloneUniformValues(uniformValues) {
     });
     return clonedValues;
 }
-exports.cloneUniformValues = cloneUniformValues;

package/lib/commonjs/mol-gl/webgl/vertex-array.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.createVertexArray = void 0;
+exports.createVertexArray = createVertexArray;
 const id_factory_1 = require("../../mol-util/id-factory");
 const getNextVertexArrayId = (0, id_factory_1.idFactory)();
 function getVertexArray(extensions) {
@@ -65,4 +65,3 @@ function createVertexArray(gl, extensions, program, attributeBuffers, elementsBu
         }
     };
 }
-exports.createVertexArray = createVertexArray;

package/lib/commonjs/mol-io/common/ascii.js

@@ -5,10 +5,9 @@
  * @author Sukolsak Sakshuwong <sukolsak@stanford.edu>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.asciiWrite = void 0;
+exports.asciiWrite = asciiWrite;
 function asciiWrite(data, str) {
     for (let i = 0, il = str.length; i < il; ++i) {
         data[i] = str.charCodeAt(i);
     }
 }
-exports.asciiWrite = asciiWrite;

package/lib/commonjs/mol-io/common/binary-cif/classifier.js

@@ -5,18 +5,17 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.classifyFloatArray = exports.classifyIntArray = void 0;
+exports.classifyIntArray = classifyIntArray;
+exports.classifyFloatArray = classifyFloatArray;
 const array_encoder_1 = require("./array-encoder");
 const number_1 = require("../../../mol-util/number");
 const type_helpers_1 = require("../../../mol-util/type-helpers");
 function classifyIntArray(xs) {
     return IntClassifier.classify(xs);
 }
-exports.classifyIntArray = classifyIntArray;
 function classifyFloatArray(xs) {
     return FloatClassifier.classify(xs);
 }
-exports.classifyFloatArray = classifyFloatArray;
 var IntClassifier;
 (function (IntClassifier) {
     function packSize(value, upperLimit) {

package/lib/commonjs/mol-io/common/binary-cif/decoder.js

@@ -6,7 +6,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.decode = void 0;
+exports.decode = decode;
 const encoding_1 = require("./encoding");
 const binary_1 = require("../binary");
 const type_helpers_1 = require("../../../mol-util/type-helpers");
@@ -21,7 +21,6 @@ function decode(data) {
     }
     return current;
 }
-exports.decode = decode;
 function decodeStep(data, encoding) {
     switch (encoding.kind) {
         case 'ByteArray': {

package/lib/commonjs/mol-io/common/binary.js

@@ -6,7 +6,9 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.uint8ToString = exports.flipByteOrder = exports.IsNativeEndianLittle = void 0;
+exports.IsNativeEndianLittle = void 0;
+exports.flipByteOrder = flipByteOrder;
+exports.uint8ToString = uint8ToString;
 exports.IsNativeEndianLittle = new Uint16Array(new Uint8Array([0x12, 0x34]).buffer)[0] === 0x3412;
 function flipByteOrder(data, bytes) {
     const buffer = new ArrayBuffer(data.length);
@@ -18,7 +20,6 @@ function flipByteOrder(data, bytes) {
     }
     return buffer;
 }
-exports.flipByteOrder = flipByteOrder;
 const ChunkSize = 0x7000;
 function uint8ToString(array) {
     if (array.length > ChunkSize) {
@@ -32,4 +33,3 @@ function uint8ToString(array) {
         return String.fromCharCode.apply(null, array);
     }
 }
-exports.uint8ToString = uint8ToString;

package/lib/commonjs/mol-io/common/msgpack/decode.js

@@ -7,12 +7,11 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.decodeMsgPack = void 0;
+exports.decodeMsgPack = decodeMsgPack;
 const utf8_1 = require("../utf8");
 function decodeMsgPack(buffer) {
     return parse({ buffer, offset: 0, dataView: new DataView(buffer.buffer) });
 }
-exports.decodeMsgPack = decodeMsgPack;
 /**
  * decode all key-value pairs of a map into an object
  */

package/lib/commonjs/mol-io/common/msgpack/encode.js

@@ -7,7 +7,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.encodeMsgPack = void 0;
+exports.encodeMsgPack = encodeMsgPack;
 const utf8_1 = require("../utf8");
 function encodeMsgPack(value) {
     const buffer = new ArrayBuffer(encodedSize(value));
@@ -16,7 +16,6 @@ function encodeMsgPack(value) {
     encodeInternal(value, view, bytes, 0);
     return bytes;
 }
-exports.encodeMsgPack = encodeMsgPack;
 function encodedSize(value) {
     const type = typeof value;
     // Raw Bytes

package/lib/commonjs/mol-io/common/simple-buffer.d.ts

@@ -4,7 +4,6 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  * @author David Sehnal <david.sehnal@gmail.com>
  */
-/// <reference types="node" />
 export interface SimpleBuffer extends Uint8Array {
     readInt8: (offset: number) => number;
     readUInt8: (offset: number) => number;

package/lib/commonjs/mol-io/common/typed-array.js

@@ -8,7 +8,12 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.readTypedArray = exports.createTypedArrayBufferContext = exports.createTypedArray = exports.makeTypedArray = exports.getElementByteSize = exports.TypedArrayValueType = void 0;
+exports.TypedArrayValueType = void 0;
+exports.getElementByteSize = getElementByteSize;
+exports.makeTypedArray = makeTypedArray;
+exports.createTypedArray = createTypedArray;
+exports.createTypedArrayBufferContext = createTypedArrayBufferContext;
+exports.readTypedArray = readTypedArray;
 const simple_buffer_1 = require("../../mol-io/common/simple-buffer");
 var TypedArrayValueType;
 (function (TypedArrayValueType) {
@@ -26,7 +31,6 @@ function getElementByteSize(type) {
         return 2;
     return 1;
 }
-exports.getElementByteSize = getElementByteSize;
 function makeTypedArray(type, buffer, byteOffset = 0, length) {
     if (type === TypedArrayValueType.Float32)
         return new Float32Array(buffer, byteOffset, length);
@@ -36,7 +40,6 @@ function makeTypedArray(type, buffer, byteOffset = 0, length) {
         return new Uint16Array(buffer, byteOffset, length);
     return new Int8Array(buffer, byteOffset, length);
 }
-exports.makeTypedArray = makeTypedArray;
 function createTypedArray(type, size) {
     switch (type) {
         case TypedArrayValueType.Float32: return new Float32Array(new ArrayBuffer(4 * size));
@@ -46,7 +49,6 @@ function createTypedArray(type, size) {
     }
     throw Error(`${type} is not a supported value format.`);
 }
-exports.createTypedArray = createTypedArray;
 function createTypedArrayBufferContext(size, type) {
     const elementByteSize = getElementByteSize(type);
     const arrayBuffer = new ArrayBuffer(elementByteSize * size);
@@ -60,7 +62,6 @@ function createTypedArrayBufferContext(size, type) {
         values: makeTypedArray(type, valuesBuffer)
     };
 }
-exports.createTypedArrayBufferContext = createTypedArrayBufferContext;
 async function readTypedArray(ctx, file, position, byteCount, valueByteOffset, littleEndian) {
     await file.readBuffer(position, ctx.readBuffer, byteCount, valueByteOffset);
     if (ctx.elementByteSize > 1 && ((littleEndian !== void 0 && littleEndian !== simple_buffer_1.SimpleBuffer.IsNativeEndianLittle) || !simple_buffer_1.SimpleBuffer.IsNativeEndianLittle)) {
@@ -69,4 +70,3 @@ async function readTypedArray(ctx, file, position, byteCount, valueByteOffset, l
     }
     return ctx.values;
 }
-exports.readTypedArray = readTypedArray;

package/lib/commonjs/mol-io/common/utf8.js

@@ -7,7 +7,9 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.utf8ByteCount = exports.utf8Read = exports.utf8Write = void 0;
+exports.utf8Write = utf8Write;
+exports.utf8Read = utf8Read;
+exports.utf8ByteCount = utf8ByteCount;
 function utf8Write(data, offset, str) {
     for (let i = 0, l = str.length; i < l; i++) {
         const codePoint = str.charCodeAt(i);
@@ -40,7 +42,6 @@ function utf8Write(data, offset, str) {
         throw new Error('bad codepoint ' + codePoint);
     }
 }
-exports.utf8Write = utf8Write;
 const __chars = function () {
     const data = [];
     for (let i = 0; i < 1024; i++)
@@ -102,7 +103,6 @@ function utf8Read(data, offset, length) {
         return _utf8Read(data, offset, length);
     }
 }
-exports.utf8Read = utf8Read;
 function utf8ByteCount(str) {
     let count = 0;
     for (let i = 0, l = str.length; i < l; i++) {
@@ -127,4 +127,3 @@ function utf8ByteCount(str) {
     }
     return count;
 }
-exports.utf8ByteCount = utf8ByteCount;

package/lib/commonjs/mol-io/reader/ccp4/parser.js

@@ -5,7 +5,12 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parse = exports.parseFile = exports.getCcp4DataOffset = exports.getCcp4ValueType = exports.readCcp4Slices = exports.readCcp4Header = void 0;
+exports.readCcp4Header = readCcp4Header;
+exports.readCcp4Slices = readCcp4Slices;
+exports.getCcp4ValueType = getCcp4ValueType;
+exports.getCcp4DataOffset = getCcp4DataOffset;
+exports.parseFile = parseFile;
+exports.parse = parse;
 const mol_task_1 = require("../../../mol-task");
 const result_1 = require("../result");
 const file_handle_1 = require("../../common/file-handle");
@@ -78,7 +83,6 @@ async function readCcp4Header(file) {
     };
     return { header, littleEndian };
 }
-exports.readCcp4Header = readCcp4Header;
 async function readCcp4Slices(header, buffer, file, byteOffset, length, littleEndian) {
     if (isMapmode2to0(header)) {
         // data from mapmode2to0 is in MODE 0 (Int8) and needs to be scaled and written as float32
@@ -98,7 +102,6 @@ async function readCcp4Slices(header, buffer, file, byteOffset, length, littleEn
         await (0, typed_array_1.readTypedArray)(buffer, file, byteOffset, length, 0, littleEndian);
     }
 }
-exports.readCcp4Slices = readCcp4Slices;
 function getCcp4DataType(mode) {
     switch (mode) {
         case 0: return typed_array_1.TypedArrayValueType.Int8;
@@ -118,11 +121,9 @@ function isMapmode2to0(header) {
 function getCcp4ValueType(header) {
     return isMapmode2to0(header) ? typed_array_1.TypedArrayValueType.Float32 : getCcp4DataType(header.MODE);
 }
-exports.getCcp4ValueType = getCcp4ValueType;
 function getCcp4DataOffset(header) {
     return 256 * 4 + header.NSYMBT;
 }
-exports.getCcp4DataOffset = getCcp4DataOffset;
 async function parseInternal(file, size, ctx) {
     await ctx.update({ message: 'Parsing CCP4/MRC/MAP file...' });
     const { header, littleEndian } = await readCcp4Header(file);
@@ -147,8 +148,6 @@ function parseFile(file, size) {
         }
     });
 }
-exports.parseFile = parseFile;
 function parse(buffer, name) {
     return parseFile(file_handle_1.FileHandle.fromBuffer(simple_buffer_1.SimpleBuffer.fromUint8Array(buffer), name), buffer.length);
 }
-exports.parse = parse;

package/lib/commonjs/mol-io/reader/cif/binary/field.js

@@ -6,7 +6,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.Field = void 0;
+exports.Field = Field;
 const db_1 = require("../../../../mol-data/db");
 const binary_cif_1 = require("../../../common/binary-cif");
 const number_parser_1 = require("../../common/text/number-parser");
@@ -50,4 +50,3 @@ function Field(column) {
             : params => db_1.ColumnHelpers.createAndFillArray(rowCount, float, params)
     };
 }
-exports.Field = Field;

package/lib/commonjs/mol-io/reader/cif/binary/parser.js

@@ -5,7 +5,7 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseCifBinary = void 0;
+exports.parseCifBinary = parseCifBinary;
 const tslib_1 = require("tslib");
 const Data = tslib_1.__importStar(require("../data-model"));
 const field_1 = require("./field");
@@ -60,4 +60,3 @@ function parseCifBinary(data) {
         }
     });
 }
-exports.parseCifBinary = parseCifBinary;

package/lib/commonjs/mol-io/reader/cif/data-model.js

@@ -6,14 +6,20 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getCifFieldType = exports.getTensor = exports.tensorFieldNameGetter = exports.CifField = exports.CifCategory = exports.CifSaveFrame = exports.CifBlock = exports.CifFile = void 0;
+exports.CifField = void 0;
+exports.CifFile = CifFile;
+exports.CifBlock = CifBlock;
+exports.CifSaveFrame = CifSaveFrame;
+exports.CifCategory = CifCategory;
+exports.tensorFieldNameGetter = tensorFieldNameGetter;
+exports.getTensor = getTensor;
+exports.getCifFieldType = getCifFieldType;
 const db_1 = require("../../../mol-data/db");
 const number_parser_1 = require("../common/text/number-parser");
 const token_1 = require("../common/text/column/token");
 function CifFile(blocks, name) {
     return { name, blocks: blocks };
 }
-exports.CifFile = CifFile;
 function CifBlock(categoryNames, categories, header, saveFrames = []) {
     return {
         categoryNames, header, categories, saveFrames,
@@ -23,15 +29,12 @@ function CifBlock(categoryNames, categories, header, saveFrames = []) {
         }
     };
 }
-exports.CifBlock = CifBlock;
 function CifSaveFrame(categoryNames, categories, header) {
     return { categoryNames, header, categories };
 }
-exports.CifSaveFrame = CifSaveFrame;
 function CifCategory(name, rowCount, fieldNames, fields) {
     return { rowCount, name, fieldNames: [...fieldNames], getField(name) { return fields[name]; } };
 }
-exports.CifCategory = CifCategory;
 (function (CifCategory) {
     function empty(name) {
         return { rowCount: 0, name, fieldNames: [], getField(name) { return void 0; } };
@@ -236,7 +239,6 @@ function tensorFieldNameGetter(field, rank, zeroIndexed, namingVariant) {
             throw new Error('Tensors with rank > 3 or rank 0 are currently not supported.');
     }
 }
-exports.tensorFieldNameGetter = tensorFieldNameGetter;
 function getTensor(category, space, row, getName) {
     const ret = space.create();
     if (space.rank === 1) {
@@ -271,7 +273,6 @@ function getTensor(category, space, row, getName) {
     }
     return ret;
 }
-exports.getTensor = getTensor;
 function getCifFieldType(field) {
     let floatCount = 0, hasStringOrScientific = false, undefinedCount = 0;
     for (let i = 0, _i = field.rowCount; i < _i; i++) {
@@ -297,4 +298,3 @@ function getCifFieldType(field) {
         return db_1.Column.Schema.float;
     return db_1.Column.Schema.int;
 }
-exports.getCifFieldType = getCifFieldType;

package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */

package/lib/commonjs/mol-io/reader/cif/schema/bird.js

@@ -2,7 +2,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'BIRD' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */

package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */

package/lib/commonjs/mol-io/reader/cif/schema/ccd.js

@@ -2,7 +2,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'CCD' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */

package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts

@@ -1,7 +1,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */
@@ -780,6 +780,14 @@ export declare const mmCIF_Schema: {
          * the entry.
          */
         pdbx_number_of_molecules: Schema.Int;
+        /**
+         * An identifier for the parent entity if this entity
+         * is part of a complex entity.  For instance a chimeric
+         * entity may be decomposed into several independent
+         * chemical entities where each component entity was
+         * obtained from a different source.
+         */
+        pdbx_parent_entity_id: Schema.Str;
         /**
          * Details about any entity mutation(s).
          */

package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js

@@ -2,7 +2,7 @@
 /**
  * Copyright (c) 2017-2022 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.391, IHM 1.25, MA 1.4.6.
+ * Code-generated 'mmCIF' schema file. Dictionary versions: mmCIF 5.395, IHM 1.25, MA 1.4.6.
  *
  * @author molstar/ciftools package
  */
@@ -792,6 +792,14 @@ exports.mmCIF_Schema = {
          * the entry.
          */
         pdbx_number_of_molecules: int,
+        /**
+         * An identifier for the parent entity if this entity
+         * is part of a complex entity.  For instance a chimeric
+         * entity may be decomposed into several independent
+         * chemical entities where each component entity was
+         * obtained from a different source.
+         */
+        pdbx_parent_entity_id: str,
         /**
          * Details about any entity mutation(s).
          */

package/lib/commonjs/mol-io/reader/cif/schema.js

@@ -6,7 +6,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.toTable = exports.toDatabase = exports.toDatabaseCollection = exports.FieldPath = void 0;
+exports.FieldPath = void 0;
+exports.toDatabaseCollection = toDatabaseCollection;
+exports.toDatabase = toDatabase;
+exports.toTable = toTable;
 const tslib_1 = require("tslib");
 const db_1 = require("../../../mol-data/db");
 const linear_algebra_1 = require("../../../mol-math/linear-algebra");
@@ -35,15 +38,12 @@ function toDatabaseCollection(schema, file, aliases) {
     }
     return dbc;
 }
-exports.toDatabaseCollection = toDatabaseCollection;
 function toDatabase(schema, frame, aliases) {
     return createDatabase(schema, frame, aliases);
 }
-exports.toDatabase = toDatabase;
 function toTable(schema, category) {
     return new CategoryTable(category, schema, true);
 }
-exports.toTable = toTable;
 function getColumnCtor(t) {
     switch (t.valueType) {
         case 'str': return (f, c, k) => createStringColumn(t, f, f.str, f.toStringArray);

package/lib/commonjs/mol-io/reader/cif/text/parser.js

@@ -6,7 +6,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseCifText = void 0;
+exports.parseCifText = parseCifText;
 const tslib_1 = require("tslib");
 /**
  * mmCIF parser.
@@ -698,4 +698,3 @@ function parseCifText(data) {
         return await parseInternal(data, ctx);
     });
 }
-exports.parseCifText = parseCifText;

package/lib/commonjs/mol-io/reader/common/text/column/fixed.d.ts

@@ -5,5 +5,5 @@
  */
 import { Column } from '../../../../../mol-data/db';
 import { Tokens } from '../tokenizer';
-export declare function FixedColumnProvider(lines: Tokens): <T extends Column.Schema<any>>(offset: number, width: number, type: T) => Column<T["T"]>;
+export declare function FixedColumnProvider(lines: Tokens): <T extends Column.Schema>(offset: number, width: number, type: T) => Column<T["T"]>;
 export declare function FixedColumn<T extends Column.Schema>(lines: Tokens, offset: number, width: number, schema: T): Column<T['T']>;

package/lib/commonjs/mol-io/reader/common/text/column/fixed.js

@@ -5,7 +5,8 @@
  * @author David Sehnal <david.sehnal@gmail.com>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.FixedColumn = exports.FixedColumnProvider = void 0;
+exports.FixedColumnProvider = FixedColumnProvider;
+exports.FixedColumn = FixedColumn;
 const db_1 = require("../../../../../mol-data/db");
 const tokenizer_1 = require("../tokenizer");
 const number_parser_1 = require("../number-parser");
@@ -14,7 +15,6 @@ function FixedColumnProvider(lines) {
         return FixedColumn(lines, offset, width, type);
     };
 }
-exports.FixedColumnProvider = FixedColumnProvider;
 function FixedColumn(lines, offset, width, schema) {
     const { data, indices, count: rowCount } = lines;
     const { valueType: type } = schema;
@@ -48,4 +48,3 @@ function FixedColumn(lines, offset, width, schema) {
         areValuesEqual: (rowA, rowB) => value(rowA) === value(rowB)
     };
 }
-exports.FixedColumn = FixedColumn;

package/lib/commonjs/mol-io/reader/common/text/column/token.d.ts

@@ -6,7 +6,7 @@
  */
 import { Column } from '../../../../../mol-data/db';
 import { Tokens } from '../tokenizer';
-export declare function TokenColumnProvider(tokens: Tokens): <T extends Column.Schema<any>>(type: T) => Column<T["T"]>;
+export declare function TokenColumnProvider(tokens: Tokens): <T extends Column.Schema>(type: T) => Column<T["T"]>;
 export declare function TokenColumn<T extends Column.Schema>(tokens: Tokens, schema: T): Column<T['T']>;
 export declare function areValuesEqualProvider(tokens: Tokens): (rowA: number, rowB: number) => boolean;
 export declare function areTokensEmpty(tokens: Tokens): boolean;

package/lib/commonjs/mol-io/reader/common/text/column/token.js

@@ -6,7 +6,10 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.areTokensEmpty = exports.areValuesEqualProvider = exports.TokenColumn = exports.TokenColumnProvider = void 0;
+exports.TokenColumnProvider = TokenColumnProvider;
+exports.TokenColumn = TokenColumn;
+exports.areValuesEqualProvider = areValuesEqualProvider;
+exports.areTokensEmpty = areTokensEmpty;
 const db_1 = require("../../../../../mol-data/db");
 const number_parser_1 = require("../number-parser");
 function TokenColumnProvider(tokens) {
@@ -14,7 +17,6 @@ function TokenColumnProvider(tokens) {
         return TokenColumn(tokens, type);
     };
 }
-exports.TokenColumnProvider = TokenColumnProvider;
 function TokenColumn(tokens, schema) {
     const { data, indices, count: rowCount } = tokens;
     const { valueType: type } = schema;
@@ -34,7 +36,6 @@ function TokenColumn(tokens, schema) {
         areValuesEqual: areValuesEqualProvider(tokens)
     };
 }
-exports.TokenColumn = TokenColumn;
 function areValuesEqualProvider(tokens) {
     const { data, indices } = tokens;
     return function (rowA, rowB) {
@@ -50,7 +51,6 @@ function areValuesEqualProvider(tokens) {
         return true;
     };
 }
-exports.areValuesEqualProvider = areValuesEqualProvider;
 function areTokensEmpty(tokens) {
     const { count, indices } = tokens;
     for (let i = 0; i < count; ++i) {
@@ -59,4 +59,3 @@ function areTokensEmpty(tokens) {
     }
     return true;
 }
-exports.areTokensEmpty = areTokensEmpty;