molstar 4.3.0 → 4.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +197 -197
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +129 -129
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -9
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/apps/mesoscale-explorer/app.js +12 -1
- package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
- package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
- package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
- package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/apps/mesoscale-explorer/data/state.js +83 -8
- package/lib/apps/mesoscale-explorer/index.html +106 -101
- package/lib/apps/mesoscale-explorer/style.scss +66 -33
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
- package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
- package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
- package/lib/apps/viewer/app.d.ts +10 -4
- package/lib/apps/viewer/app.js +28 -0
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +129 -129
- package/lib/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/cli/cifschema/util/generate.js +12 -12
- package/lib/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
- package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
- package/lib/commonjs/apps/viewer/app.d.ts +10 -4
- package/lib/commonjs/apps/viewer/app.js +28 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
- package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
- package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
- package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
- package/lib/commonjs/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
- package/lib/commonjs/cli/structure-info/helpers.js +2 -3
- package/lib/commonjs/cli/structure-info/model.js +11 -12
- package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +2 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
- package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/behavior.js +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
- package/lib/commonjs/extensions/g3d/data.js +2 -3
- package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
- package/lib/commonjs/extensions/g3d/model.js +5 -5
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
- package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/commonjs/extensions/meshes/examples.js +9 -9
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
- package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
- package/lib/commonjs/extensions/model-export/export.js +2 -2
- package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
- package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mvs/camera.js +4 -5
- package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
- package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
- package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
- package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
- package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
- package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
- package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
- package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
- package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
- package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
- package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
- package/lib/commonjs/extensions/mvs/load.js +1 -2
- package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
- package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
- package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
- package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
- package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
- package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
- package/lib/commonjs/mol-canvas3d/util.js +3 -4
- package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
- package/lib/commonjs/mol-data/db/column.d.ts +1 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
- package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
- package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
- package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
- package/lib/commonjs/mol-data/int/linked-index.js +1 -2
- package/lib/commonjs/mol-data/util/array.js +5 -6
- package/lib/commonjs/mol-data/util/buckets.js +1 -2
- package/lib/commonjs/mol-data/util/combination.js +2 -2
- package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
- package/lib/commonjs/mol-data/util/grouping.js +2 -3
- package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
- package/lib/commonjs/mol-data/util/sort.js +5 -6
- package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.js +3 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
- package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
- package/lib/commonjs/mol-geo/primitive/box.js +3 -4
- package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
- package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
- package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
- package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
- package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
- package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
- package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
- package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
- package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
- package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
- package/lib/commonjs/mol-geo/primitive/star.js +2 -2
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
- package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
- package/lib/commonjs/mol-geo/util/location-iterator.js +3 -4
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +3 -3
- package/lib/commonjs/mol-geo/util.js +7 -8
- package/lib/commonjs/mol-gl/compute/grid3d.js +2 -3
- package/lib/commonjs/mol-gl/compute/hi-z.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +2 -3
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +2 -3
- package/lib/commonjs/mol-gl/compute/util.js +5 -5
- package/lib/commonjs/mol-gl/render-object.js +3 -3
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -2
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -2
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- package/lib/mol-gl/shader/spheres.frag.js +148 -148
- package/lib/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +1 -1
- package/lib/mol-gl/shader/ssao-blur.frag.js +100 -97
- package/lib/mol-gl/shader/ssao.frag.js +211 -211
- package/lib/mol-gl/shader/text.frag.js +85 -85
- package/lib/mol-gl/shader/text.vert.js +85 -85
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/mol-gl/shader-code.js +16 -16
- package/lib/mol-gl/webgl/compat.js +12 -12
- package/lib/mol-gl/webgl/render-item.d.ts +2 -2
- package/lib/mol-io/common/simple-buffer.d.ts +0 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +9 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +9 -1
- package/lib/mol-io/reader/common/text/column/fixed.d.ts +1 -1
- package/lib/mol-io/reader/common/text/column/token.d.ts +1 -1
- package/lib/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/mol-model/loci.d.ts +1 -1
- package/lib/mol-model/sequence/alignment/alignment.d.ts +2 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +3 -3
- package/lib/mol-model/structure/query/queries/generators.js +2 -2
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- package/lib/mol-model/structure/structure/properties.js +1 -0
- package/lib/mol-model/volume/volume.d.ts +6 -6
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/schema.d.ts +1 -0
- package/lib/mol-model-formats/structure/common/entity.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
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- package/lib/mol-plugin/behavior/behavior.d.ts +9 -9
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +3 -3
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +4 -4
- package/lib/mol-plugin/commands.d.ts +23 -87
- package/lib/mol-plugin/context.d.ts +3 -2
- package/lib/mol-plugin/context.js +4 -2
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- package/lib/mol-plugin/util/headless-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/headless-screenshot.js +3 -1
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- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/actions/volume.js +4 -12
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/mol-plugin-state/formats/registry.d.ts +1 -1
- package/lib/mol-plugin-state/formats/trajectory.d.ts +9 -9
- package/lib/mol-plugin-state/formats/volume.d.ts +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy.d.ts +3 -3
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- package/lib/mol-plugin-state/transforms/data.d.ts +10 -1
- package/lib/mol-plugin-state/transforms/data.js +30 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/base.js +2 -1
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- package/lib/mol-plugin-ui/controls/icons.js +10 -0
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- package/lib/mol-plugin-ui/controls.js +1 -1
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- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
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- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
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- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
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- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/spec.d.ts +10 -10
- package/lib/mol-plugin-ui/spec.js +1 -1
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- package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
- package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
- package/lib/mol-repr/representation.d.ts +3 -3
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
- package/lib/mol-repr/structure/params.d.ts +5 -0
- package/lib/mol-repr/structure/registry.d.ts +11 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +5 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
- package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
- package/lib/mol-repr/volume/isosurface.d.ts +95 -90
- package/lib/mol-repr/volume/registry.d.ts +63 -60
- package/lib/mol-repr/volume/segment.d.ts +80 -75
- package/lib/mol-repr/volume/slice.d.ts +45 -45
- package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
- package/lib/mol-state/object.d.ts +4 -4
- package/lib/mol-state/state.d.ts +4 -4
- package/lib/mol-state/transform.d.ts +1 -1
- package/lib/mol-state/transformer.d.ts +1 -1
- package/lib/mol-task/util/scheduler.d.ts +0 -1
- package/lib/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/mol-theme/color/element-index.d.ts +2 -2
- package/lib/mol-theme/color/entity-id.d.ts +2 -2
- package/lib/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/mol-theme/color/model-index.d.ts +2 -2
- package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/mol-theme/color/structure-index.d.ts +2 -2
- package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
- package/lib/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/mol-theme/color/volume-segment.d.ts +2 -2
- package/lib/mol-theme/color.d.ts +16 -16
- package/lib/mol-theme/theme.d.ts +3 -3
- package/lib/mol-util/color/palette.d.ts +4 -3
- package/lib/mol-util/color/scale.d.ts +2 -1
- package/lib/mol-util/data-source.d.ts +0 -1
- package/lib/mol-util/nodejs-shims.d.ts +1 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/servers/model/config.d.ts +4 -4
- package/lib/servers/model/utils/tar.d.ts +0 -1
- package/lib/servers/volume/common/binary-schema.d.ts +0 -1
- package/lib/servers/volume/common/data-format.d.ts +0 -1
- package/lib/servers/volume/config.d.ts +1 -5
- package/lib/servers/volume/config.js +5 -5
- package/package.json +197 -196
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// BSD 3-Clause License
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//
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// - Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
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// OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
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// Break the four bytes down into an array of 32 bits.
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37
|
+
void bytesToBits(const in ivec4 bytes, out bool bits[32]) {
|
|
38
|
+
for (int channelIndex = 0; channelIndex < 4; ++channelIndex) {
|
|
39
|
+
float acc = float(bytes[channelIndex]);
|
|
40
|
+
for (int indexInByte = 7; indexInByte >= 0; --indexInByte) {
|
|
41
|
+
float powerOfTwo = exp2(float(indexInByte));
|
|
42
|
+
bool bit = acc >= powerOfTwo;
|
|
43
|
+
bits[channelIndex * 8 + (7 - indexInByte)] = bit;
|
|
44
|
+
acc = mod(acc, powerOfTwo);
|
|
45
|
+
}
|
|
46
|
+
}
|
|
47
|
+
}
|
|
48
|
+
|
|
49
|
+
// Compute the exponent of the 32-bit float.
|
|
50
|
+
float getExponent(bool bits[32]) {
|
|
51
|
+
const int startIndex = 1;
|
|
52
|
+
const int bitStringLength = 8;
|
|
53
|
+
const int endBeforeIndex = startIndex + bitStringLength;
|
|
54
|
+
float acc = 0.0;
|
|
55
|
+
int pow2 = bitStringLength - 1;
|
|
56
|
+
for (int bitIndex = startIndex; bitIndex < endBeforeIndex; ++bitIndex) {
|
|
57
|
+
acc += float(bits[bitIndex]) * exp2(float(pow2--));
|
|
58
|
+
}
|
|
59
|
+
return acc;
|
|
60
|
+
}
|
|
61
|
+
|
|
62
|
+
// Compute the mantissa of the 32-bit float.
|
|
63
|
+
float getMantissa(bool bits[32], bool subnormal) {
|
|
64
|
+
const int startIndex = 9;
|
|
65
|
+
const int bitStringLength = 23;
|
|
66
|
+
const int endBeforeIndex = startIndex + bitStringLength;
|
|
67
|
+
// Leading/implicit/hidden bit convention:
|
|
68
|
+
// If the number is not subnormal (with exponent 0), we add a leading 1 digit.
|
|
69
|
+
float acc = float(!subnormal) * exp2(float(bitStringLength));
|
|
70
|
+
int pow2 = bitStringLength - 1;
|
|
71
|
+
for (int bitIndex = startIndex; bitIndex < endBeforeIndex; ++bitIndex) {
|
|
72
|
+
acc += float(bits[bitIndex]) * exp2(float(pow2--));
|
|
73
|
+
}
|
|
74
|
+
return acc;
|
|
75
|
+
}
|
|
76
|
+
|
|
77
|
+
// Parse the float from its 32 bits.
|
|
78
|
+
float bitsToFloat(bool bits[32]) {
|
|
79
|
+
float signBit = float(bits[0]) * -2.0 + 1.0;
|
|
80
|
+
float exponent = getExponent(bits);
|
|
81
|
+
bool subnormal = abs(exponent - 0.0) < 0.01;
|
|
82
|
+
float mantissa = getMantissa(bits, subnormal);
|
|
83
|
+
float exponentBias = 127.0;
|
|
84
|
+
return signBit * mantissa * exp2(exponent - exponentBias - 23.0);
|
|
85
|
+
}
|
|
86
|
+
|
|
87
|
+
float rgbaToFloat(vec4 texelRGBA, bool littleEndian) {
|
|
88
|
+
ivec4 rgbaBytes = floatsToBytes(texelRGBA, littleEndian);
|
|
89
|
+
bool bits[32];
|
|
90
|
+
bytesToBits(rgbaBytes, bits);
|
|
91
|
+
return bitsToFloat(bits);
|
|
92
|
+
}
|
|
93
93
|
`;
|
|
@@ -1,15 +1,15 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.size_vert_params = void 0;
|
|
4
|
-
exports.size_vert_params = `
|
|
5
|
-
#if defined(dSizeType_uniform)
|
|
6
|
-
uniform float uSize;
|
|
7
|
-
#elif defined(dSizeType_attribute)
|
|
8
|
-
attribute float aSize;
|
|
9
|
-
#elif defined(dSizeType_instance) || defined(dSizeType_group) || defined(dSizeType_groupInstance)
|
|
10
|
-
uniform vec2 uSizeTexDim;
|
|
11
|
-
uniform sampler2D tSize;
|
|
12
|
-
#endif
|
|
13
|
-
|
|
14
|
-
uniform float uSizeFactor;
|
|
4
|
+
exports.size_vert_params = `
|
|
5
|
+
#if defined(dSizeType_uniform)
|
|
6
|
+
uniform float uSize;
|
|
7
|
+
#elif defined(dSizeType_attribute)
|
|
8
|
+
attribute float aSize;
|
|
9
|
+
#elif defined(dSizeType_instance) || defined(dSizeType_group) || defined(dSizeType_groupInstance)
|
|
10
|
+
uniform vec2 uSizeTexDim;
|
|
11
|
+
uniform sampler2D tSize;
|
|
12
|
+
#endif
|
|
13
|
+
|
|
14
|
+
uniform float uSizeFactor;
|
|
15
15
|
`;
|
|
@@ -6,27 +6,27 @@
|
|
|
6
6
|
*/
|
|
7
7
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
8
8
|
exports.texture3d_from_1d_trilinear = void 0;
|
|
9
|
-
exports.texture3d_from_1d_trilinear = `
|
|
10
|
-
vec4 texture3dFrom1dTrilinear(const in sampler2D tex, const in vec3 pos, const in vec3 gridDim, const in vec2 texDim, const in float offset) {
|
|
11
|
-
float gdYZ = gridDim.z * gridDim.y;
|
|
12
|
-
float gdZ = gridDim.z;
|
|
13
|
-
vec3 p0 = floor(pos * gridDim);
|
|
14
|
-
vec3 p1 = ceil(pos * gridDim);
|
|
15
|
-
vec3 pd = (pos * gridDim - p0) / (p1 - p0);
|
|
16
|
-
vec4 s000 = readFromTexture(tex, offset + p0.z + p0.y * gdZ + p0.x * gdYZ, texDim);
|
|
17
|
-
vec4 s100 = readFromTexture(tex, offset + p0.z + p0.y * gdZ + p1.x * gdYZ, texDim);
|
|
18
|
-
vec4 s001 = readFromTexture(tex, offset + p1.z + p0.y * gdZ + p0.x * gdYZ, texDim);
|
|
19
|
-
vec4 s101 = readFromTexture(tex, offset + p1.z + p0.y * gdZ + p1.x * gdYZ, texDim);
|
|
20
|
-
vec4 s010 = readFromTexture(tex, offset + p0.z + p1.y * gdZ + p0.x * gdYZ, texDim);
|
|
21
|
-
vec4 s110 = readFromTexture(tex, offset + p0.z + p1.y * gdZ + p1.x * gdYZ, texDim);
|
|
22
|
-
vec4 s011 = readFromTexture(tex, offset + p1.z + p1.y * gdZ + p0.x * gdYZ, texDim);
|
|
23
|
-
vec4 s111 = readFromTexture(tex, offset + p1.z + p1.y * gdZ + p1.x * gdYZ, texDim);
|
|
24
|
-
vec4 s00 = mix(s000, s100, pd.x);
|
|
25
|
-
vec4 s01 = mix(s001, s101, pd.x);
|
|
26
|
-
vec4 s10 = mix(s010, s110, pd.x);
|
|
27
|
-
vec4 s11 = mix(s011, s111, pd.x);
|
|
28
|
-
vec4 s0 = mix(s00, s10, pd.y);
|
|
29
|
-
vec4 s1 = mix(s01, s11, pd.y);
|
|
30
|
-
return mix(s0, s1, pd.z);
|
|
31
|
-
}
|
|
9
|
+
exports.texture3d_from_1d_trilinear = `
|
|
10
|
+
vec4 texture3dFrom1dTrilinear(const in sampler2D tex, const in vec3 pos, const in vec3 gridDim, const in vec2 texDim, const in float offset) {
|
|
11
|
+
float gdYZ = gridDim.z * gridDim.y;
|
|
12
|
+
float gdZ = gridDim.z;
|
|
13
|
+
vec3 p0 = floor(pos * gridDim);
|
|
14
|
+
vec3 p1 = ceil(pos * gridDim);
|
|
15
|
+
vec3 pd = (pos * gridDim - p0) / (p1 - p0);
|
|
16
|
+
vec4 s000 = readFromTexture(tex, offset + p0.z + p0.y * gdZ + p0.x * gdYZ, texDim);
|
|
17
|
+
vec4 s100 = readFromTexture(tex, offset + p0.z + p0.y * gdZ + p1.x * gdYZ, texDim);
|
|
18
|
+
vec4 s001 = readFromTexture(tex, offset + p1.z + p0.y * gdZ + p0.x * gdYZ, texDim);
|
|
19
|
+
vec4 s101 = readFromTexture(tex, offset + p1.z + p0.y * gdZ + p1.x * gdYZ, texDim);
|
|
20
|
+
vec4 s010 = readFromTexture(tex, offset + p0.z + p1.y * gdZ + p0.x * gdYZ, texDim);
|
|
21
|
+
vec4 s110 = readFromTexture(tex, offset + p0.z + p1.y * gdZ + p1.x * gdYZ, texDim);
|
|
22
|
+
vec4 s011 = readFromTexture(tex, offset + p1.z + p1.y * gdZ + p0.x * gdYZ, texDim);
|
|
23
|
+
vec4 s111 = readFromTexture(tex, offset + p1.z + p1.y * gdZ + p1.x * gdYZ, texDim);
|
|
24
|
+
vec4 s00 = mix(s000, s100, pd.x);
|
|
25
|
+
vec4 s01 = mix(s001, s101, pd.x);
|
|
26
|
+
vec4 s10 = mix(s010, s110, pd.x);
|
|
27
|
+
vec4 s11 = mix(s011, s111, pd.x);
|
|
28
|
+
vec4 s0 = mix(s00, s10, pd.y);
|
|
29
|
+
vec4 s1 = mix(s01, s11, pd.y);
|
|
30
|
+
return mix(s0, s1, pd.z);
|
|
31
|
+
}
|
|
32
32
|
`;
|
|
@@ -7,21 +7,21 @@
|
|
|
7
7
|
*/
|
|
8
8
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
9
9
|
exports.texture3d_from_2d_linear = void 0;
|
|
10
|
-
exports.texture3d_from_2d_linear = `
|
|
11
|
-
vec4 texture3dFrom2dLinear(sampler2D tex, vec3 pos, vec3 gridDim, vec2 texDim) {
|
|
12
|
-
float zSlice0 = floor(pos.z * gridDim.z);
|
|
13
|
-
float column0 = intMod(zSlice0 * gridDim.x, texDim.x) / gridDim.x;
|
|
14
|
-
float row0 = floor(intDiv(zSlice0 * gridDim.x, texDim.x));
|
|
15
|
-
vec2 coord0 = (vec2(column0 * gridDim.x, row0 * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
16
|
-
vec4 color0 = texture2D(tex, coord0);
|
|
17
|
-
|
|
18
|
-
float zSlice1 = zSlice0 + 1.0;
|
|
19
|
-
float column1 = intMod(zSlice1 * gridDim.x, texDim.x) / gridDim.x;
|
|
20
|
-
float row1 = floor(intDiv(zSlice1 * gridDim.x, texDim.x));
|
|
21
|
-
vec2 coord1 = (vec2(column1 * gridDim.x, row1 * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
22
|
-
vec4 color1 = texture2D(tex, coord1);
|
|
23
|
-
|
|
24
|
-
float delta0 = abs((pos.z * gridDim.z) - zSlice0);
|
|
25
|
-
return mix(color0, color1, delta0);
|
|
26
|
-
}
|
|
10
|
+
exports.texture3d_from_2d_linear = `
|
|
11
|
+
vec4 texture3dFrom2dLinear(sampler2D tex, vec3 pos, vec3 gridDim, vec2 texDim) {
|
|
12
|
+
float zSlice0 = floor(pos.z * gridDim.z);
|
|
13
|
+
float column0 = intMod(zSlice0 * gridDim.x, texDim.x) / gridDim.x;
|
|
14
|
+
float row0 = floor(intDiv(zSlice0 * gridDim.x, texDim.x));
|
|
15
|
+
vec2 coord0 = (vec2(column0 * gridDim.x, row0 * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
16
|
+
vec4 color0 = texture2D(tex, coord0);
|
|
17
|
+
|
|
18
|
+
float zSlice1 = zSlice0 + 1.0;
|
|
19
|
+
float column1 = intMod(zSlice1 * gridDim.x, texDim.x) / gridDim.x;
|
|
20
|
+
float row1 = floor(intDiv(zSlice1 * gridDim.x, texDim.x));
|
|
21
|
+
vec2 coord1 = (vec2(column1 * gridDim.x, row1 * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
22
|
+
vec4 color1 = texture2D(tex, coord1);
|
|
23
|
+
|
|
24
|
+
float delta0 = abs((pos.z * gridDim.z) - zSlice0);
|
|
25
|
+
return mix(color0, color1, delta0);
|
|
26
|
+
}
|
|
27
27
|
`;
|
|
@@ -7,12 +7,12 @@
|
|
|
7
7
|
*/
|
|
8
8
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
9
9
|
exports.texture3d_from_2d_nearest = void 0;
|
|
10
|
-
exports.texture3d_from_2d_nearest = `
|
|
11
|
-
vec4 texture3dFrom2dNearest(sampler2D tex, vec3 pos, vec3 gridDim, vec2 texDim) {
|
|
12
|
-
float zSlice = floor(pos.z * gridDim.z + 0.5); // round to nearest z-slice
|
|
13
|
-
float column = intMod(zSlice * gridDim.x, texDim.x) / gridDim.x;
|
|
14
|
-
float row = floor(intDiv(zSlice * gridDim.x, texDim.x));
|
|
15
|
-
vec2 coord = (vec2(column * gridDim.x, row * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
16
|
-
return texture2D(tex, coord);
|
|
17
|
-
}
|
|
10
|
+
exports.texture3d_from_2d_nearest = `
|
|
11
|
+
vec4 texture3dFrom2dNearest(sampler2D tex, vec3 pos, vec3 gridDim, vec2 texDim) {
|
|
12
|
+
float zSlice = floor(pos.z * gridDim.z + 0.5); // round to nearest z-slice
|
|
13
|
+
float column = intMod(zSlice * gridDim.x, texDim.x) / gridDim.x;
|
|
14
|
+
float row = floor(intDiv(zSlice * gridDim.x, texDim.x));
|
|
15
|
+
vec2 coord = (vec2(column * gridDim.x, row * gridDim.y) + (pos.xy * gridDim.xy)) / texDim;
|
|
16
|
+
return texture2D(tex, coord);
|
|
17
|
+
}
|
|
18
18
|
`;
|
|
@@ -7,29 +7,29 @@
|
|
|
7
7
|
*/
|
|
8
8
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
9
9
|
exports.wboit_write = void 0;
|
|
10
|
-
exports.wboit_write = `
|
|
11
|
-
#if defined(dRenderVariant_colorWboit)
|
|
12
|
-
if (uRenderMask == MaskOpaque) {
|
|
13
|
-
if (preFogAlpha < 1.0) {
|
|
14
|
-
discard;
|
|
15
|
-
}
|
|
16
|
-
} else if (uRenderMask == MaskTransparent) {
|
|
17
|
-
if (preFogAlpha != 1.0 && fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize)) {
|
|
18
|
-
#ifdef dTransparentBackfaces_off
|
|
19
|
-
if (interior) discard;
|
|
20
|
-
#endif
|
|
21
|
-
float alpha = gl_FragColor.a;
|
|
22
|
-
float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);
|
|
23
|
-
gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);
|
|
24
|
-
// extra alpha is to handle pre-multiplied alpha
|
|
25
|
-
#ifndef dGeometryType_directVolume
|
|
26
|
-
gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);
|
|
27
|
-
#else
|
|
28
|
-
gl_FragData[1] = vec4(alpha * alpha * wboitWeight);
|
|
29
|
-
#endif
|
|
30
|
-
} else {
|
|
31
|
-
discard;
|
|
32
|
-
}
|
|
33
|
-
}
|
|
34
|
-
#endif
|
|
10
|
+
exports.wboit_write = `
|
|
11
|
+
#if defined(dRenderVariant_colorWboit)
|
|
12
|
+
if (uRenderMask == MaskOpaque) {
|
|
13
|
+
if (preFogAlpha < 1.0) {
|
|
14
|
+
discard;
|
|
15
|
+
}
|
|
16
|
+
} else if (uRenderMask == MaskTransparent) {
|
|
17
|
+
if (preFogAlpha != 1.0 && fragmentDepth < getDepth(gl_FragCoord.xy / uDrawingBufferSize)) {
|
|
18
|
+
#ifdef dTransparentBackfaces_off
|
|
19
|
+
if (interior) discard;
|
|
20
|
+
#endif
|
|
21
|
+
float alpha = gl_FragColor.a;
|
|
22
|
+
float wboitWeight = alpha * clamp(pow(1.0 - fragmentDepth, 2.0), 0.01, 1.0);
|
|
23
|
+
gl_FragColor = vec4(gl_FragColor.rgb * alpha * wboitWeight, alpha);
|
|
24
|
+
// extra alpha is to handle pre-multiplied alpha
|
|
25
|
+
#ifndef dGeometryType_directVolume
|
|
26
|
+
gl_FragData[1] = vec4((uTransparentBackground ? alpha : 1.0) * alpha * wboitWeight);
|
|
27
|
+
#else
|
|
28
|
+
gl_FragData[1] = vec4(alpha * alpha * wboitWeight);
|
|
29
|
+
#endif
|
|
30
|
+
} else {
|
|
31
|
+
discard;
|
|
32
|
+
}
|
|
33
|
+
}
|
|
34
|
+
#endif
|
|
35
35
|
`;
|
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.compose_frag = void 0;
|
|
4
|
-
exports.compose_frag = `
|
|
5
|
-
precision highp float;
|
|
6
|
-
precision highp sampler2D;
|
|
7
|
-
|
|
8
|
-
uniform sampler2D tColor;
|
|
9
|
-
uniform vec2 uTexSize;
|
|
10
|
-
uniform float uWeight;
|
|
11
|
-
|
|
12
|
-
void main() {
|
|
13
|
-
vec2 coords = gl_FragCoord.xy / uTexSize;
|
|
14
|
-
gl_FragColor = texture2D(tColor, coords) * uWeight;
|
|
15
|
-
}
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exports.compose_frag = `
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precision highp float;
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6
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+
precision highp sampler2D;
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+
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uniform sampler2D tColor;
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9
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uniform vec2 uTexSize;
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10
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uniform float uWeight;
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+
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+
void main() {
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vec2 coords = gl_FragCoord.xy / uTexSize;
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gl_FragColor = texture2D(tColor, coords) * uWeight;
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+
}
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16
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`;
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@@ -6,27 +6,27 @@
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6
6
|
*/
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7
7
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Object.defineProperty(exports, "__esModule", { value: true });
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8
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exports.accumulate_frag = void 0;
|
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9
|
-
exports.accumulate_frag = `
|
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10
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-
precision highp float;
|
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11
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-
|
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12
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-
varying vec3 vPosition;
|
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13
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-
varying vec4 vColor;
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14
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-
|
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15
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uniform float uCurrentSlice;
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uniform float uCurrentX;
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uniform float uCurrentY;
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uniform float uResolution;
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const float p = 2.0;
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-
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void main() {
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vec2 v = gl_FragCoord.xy - vec2(uCurrentX, uCurrentY) - 0.5;
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24
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vec3 fragPos = vec3(v.x, v.y, uCurrentSlice);
|
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float dist = distance(fragPos, vPosition);
|
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|
-
if (dist > p) discard;
|
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|
-
|
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|
-
float f = p - dist;
|
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|
-
gl_FragColor = vColor * f;
|
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30
|
-
gl_FragData[1] = vec4(f);
|
|
31
|
-
}
|
|
9
|
+
exports.accumulate_frag = `
|
|
10
|
+
precision highp float;
|
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11
|
+
|
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12
|
+
varying vec3 vPosition;
|
|
13
|
+
varying vec4 vColor;
|
|
14
|
+
|
|
15
|
+
uniform float uCurrentSlice;
|
|
16
|
+
uniform float uCurrentX;
|
|
17
|
+
uniform float uCurrentY;
|
|
18
|
+
uniform float uResolution;
|
|
19
|
+
|
|
20
|
+
const float p = 2.0;
|
|
21
|
+
|
|
22
|
+
void main() {
|
|
23
|
+
vec2 v = gl_FragCoord.xy - vec2(uCurrentX, uCurrentY) - 0.5;
|
|
24
|
+
vec3 fragPos = vec3(v.x, v.y, uCurrentSlice);
|
|
25
|
+
float dist = distance(fragPos, vPosition);
|
|
26
|
+
if (dist > p) discard;
|
|
27
|
+
|
|
28
|
+
float f = p - dist;
|
|
29
|
+
gl_FragColor = vColor * f;
|
|
30
|
+
gl_FragData[1] = vec4(f);
|
|
31
|
+
}
|
|
32
32
|
`;
|
|
@@ -6,47 +6,47 @@
|
|
|
6
6
|
*/
|
|
7
7
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
8
8
|
exports.accumulate_vert = void 0;
|
|
9
|
-
exports.accumulate_vert = `
|
|
10
|
-
precision highp float;
|
|
11
|
-
|
|
12
|
-
#include common
|
|
13
|
-
#include read_from_texture
|
|
14
|
-
|
|
15
|
-
uniform int uGroupCount;
|
|
16
|
-
|
|
17
|
-
attribute float aSample;
|
|
18
|
-
#define SampleID int(aSample)
|
|
19
|
-
|
|
20
|
-
attribute mat4 aTransform;
|
|
21
|
-
attribute float aInstance;
|
|
22
|
-
|
|
23
|
-
uniform vec2 uGeoTexDim;
|
|
24
|
-
uniform sampler2D tPosition;
|
|
25
|
-
uniform sampler2D tGroup;
|
|
26
|
-
|
|
27
|
-
uniform vec2 uColorTexDim;
|
|
28
|
-
uniform sampler2D tColor;
|
|
29
|
-
|
|
30
|
-
varying vec3 vPosition;
|
|
31
|
-
varying vec4 vColor;
|
|
32
|
-
|
|
33
|
-
uniform vec3 uBboxSize;
|
|
34
|
-
uniform vec3 uBboxMin;
|
|
35
|
-
uniform float uResolution;
|
|
36
|
-
|
|
37
|
-
void main() {
|
|
38
|
-
vec3 position = readFromTexture(tPosition, SampleID, uGeoTexDim).xyz;
|
|
39
|
-
float group = unpackRGBToInt(readFromTexture(tGroup, SampleID, uGeoTexDim).rgb);
|
|
40
|
-
|
|
41
|
-
position = (aTransform * vec4(position, 1.0)).xyz;
|
|
42
|
-
gl_PointSize = 7.0;
|
|
43
|
-
vPosition = (position - uBboxMin) / uResolution;
|
|
44
|
-
gl_Position = vec4(((position - uBboxMin) / uBboxSize) * 2.0 - 1.0, 1.0);
|
|
45
|
-
|
|
46
|
-
#if defined(dColorType_group)
|
|
47
|
-
vColor = readFromTexture(tColor, group, uColorTexDim);
|
|
48
|
-
#elif defined(dColorType_groupInstance)
|
|
49
|
-
vColor = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim);
|
|
50
|
-
#endif
|
|
51
|
-
}
|
|
9
|
+
exports.accumulate_vert = `
|
|
10
|
+
precision highp float;
|
|
11
|
+
|
|
12
|
+
#include common
|
|
13
|
+
#include read_from_texture
|
|
14
|
+
|
|
15
|
+
uniform int uGroupCount;
|
|
16
|
+
|
|
17
|
+
attribute float aSample;
|
|
18
|
+
#define SampleID int(aSample)
|
|
19
|
+
|
|
20
|
+
attribute mat4 aTransform;
|
|
21
|
+
attribute float aInstance;
|
|
22
|
+
|
|
23
|
+
uniform vec2 uGeoTexDim;
|
|
24
|
+
uniform sampler2D tPosition;
|
|
25
|
+
uniform sampler2D tGroup;
|
|
26
|
+
|
|
27
|
+
uniform vec2 uColorTexDim;
|
|
28
|
+
uniform sampler2D tColor;
|
|
29
|
+
|
|
30
|
+
varying vec3 vPosition;
|
|
31
|
+
varying vec4 vColor;
|
|
32
|
+
|
|
33
|
+
uniform vec3 uBboxSize;
|
|
34
|
+
uniform vec3 uBboxMin;
|
|
35
|
+
uniform float uResolution;
|
|
36
|
+
|
|
37
|
+
void main() {
|
|
38
|
+
vec3 position = readFromTexture(tPosition, SampleID, uGeoTexDim).xyz;
|
|
39
|
+
float group = unpackRGBToInt(readFromTexture(tGroup, SampleID, uGeoTexDim).rgb);
|
|
40
|
+
|
|
41
|
+
position = (aTransform * vec4(position, 1.0)).xyz;
|
|
42
|
+
gl_PointSize = 7.0;
|
|
43
|
+
vPosition = (position - uBboxMin) / uResolution;
|
|
44
|
+
gl_Position = vec4(((position - uBboxMin) / uBboxSize) * 2.0 - 1.0, 1.0);
|
|
45
|
+
|
|
46
|
+
#if defined(dColorType_group)
|
|
47
|
+
vColor = readFromTexture(tColor, group, uColorTexDim);
|
|
48
|
+
#elif defined(dColorType_groupInstance)
|
|
49
|
+
vColor = readFromTexture(tColor, aInstance * float(uGroupCount) + group, uColorTexDim);
|
|
50
|
+
#endif
|
|
51
|
+
}
|
|
52
52
|
`;
|
|
@@ -6,19 +6,19 @@
|
|
|
6
6
|
*/
|
|
7
7
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
8
8
|
exports.normalize_frag = void 0;
|
|
9
|
-
exports.normalize_frag = `
|
|
10
|
-
precision highp float;
|
|
11
|
-
precision highp sampler2D;
|
|
12
|
-
|
|
13
|
-
uniform sampler2D tColor;
|
|
14
|
-
uniform sampler2D tCount;
|
|
15
|
-
uniform vec2 uTexSize;
|
|
16
|
-
|
|
17
|
-
void main(void) {
|
|
18
|
-
vec2 coords = gl_FragCoord.xy / uTexSize;
|
|
19
|
-
vec4 color = texture2D(tColor, coords);
|
|
20
|
-
float count = texture2D(tCount, coords).r;
|
|
21
|
-
|
|
22
|
-
gl_FragColor = color / count;
|
|
23
|
-
}
|
|
9
|
+
exports.normalize_frag = `
|
|
10
|
+
precision highp float;
|
|
11
|
+
precision highp sampler2D;
|
|
12
|
+
|
|
13
|
+
uniform sampler2D tColor;
|
|
14
|
+
uniform sampler2D tCount;
|
|
15
|
+
uniform vec2 uTexSize;
|
|
16
|
+
|
|
17
|
+
void main(void) {
|
|
18
|
+
vec2 coords = gl_FragCoord.xy / uTexSize;
|
|
19
|
+
vec4 color = texture2D(tColor, coords);
|
|
20
|
+
float count = texture2D(tCount, coords).r;
|
|
21
|
+
|
|
22
|
+
gl_FragColor = color / count;
|
|
23
|
+
}
|
|
24
24
|
`;
|
|
@@ -1,15 +1,15 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.copy_frag = void 0;
|
|
4
|
-
exports.copy_frag = `
|
|
5
|
-
precision highp float;
|
|
6
|
-
precision highp sampler2D;
|
|
7
|
-
|
|
8
|
-
uniform sampler2D tColor;
|
|
9
|
-
uniform vec2 uTexSize;
|
|
10
|
-
|
|
11
|
-
void main() {
|
|
12
|
-
vec2 coords = gl_FragCoord.xy / uTexSize;
|
|
13
|
-
gl_FragColor = texture2D(tColor, coords);
|
|
14
|
-
}
|
|
4
|
+
exports.copy_frag = `
|
|
5
|
+
precision highp float;
|
|
6
|
+
precision highp sampler2D;
|
|
7
|
+
|
|
8
|
+
uniform sampler2D tColor;
|
|
9
|
+
uniform vec2 uTexSize;
|
|
10
|
+
|
|
11
|
+
void main() {
|
|
12
|
+
vec2 coords = gl_FragCoord.xy / uTexSize;
|
|
13
|
+
gl_FragColor = texture2D(tColor, coords);
|
|
14
|
+
}
|
|
15
15
|
`;
|