molstar 4.3.0 → 4.4.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +197 -197
- package/build/viewer/embedded.html +52 -52
- package/build/viewer/index.html +129 -129
- package/build/viewer/molstar.css +1 -1
- package/build/viewer/molstar.js +1 -1
- package/build/viewer/molstar.js.LICENSE.txt +0 -9
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/apps/docking-viewer/viewport.js +2 -1
- package/lib/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/apps/mesoscale-explorer/app.js +12 -1
- package/lib/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/apps/mesoscale-explorer/behavior/camera.js +32 -6
- package/lib/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/apps/mesoscale-explorer/data/cellpack/preset.js +8 -5
- package/lib/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/apps/mesoscale-explorer/data/generic/preset.js +7 -6
- package/lib/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/mmcif/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/apps/mesoscale-explorer/data/petworld/preset.js +6 -3
- package/lib/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/apps/mesoscale-explorer/data/state.js +83 -8
- package/lib/apps/mesoscale-explorer/index.html +106 -101
- package/lib/apps/mesoscale-explorer/style.scss +66 -33
- package/lib/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/apps/mesoscale-explorer/ui/entities.js +301 -32
- package/lib/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/apps/mesoscale-explorer/ui/panels.js +42 -5
- package/lib/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/apps/mesoscale-explorer/ui/states.js +471 -11
- package/lib/apps/viewer/app.d.ts +10 -4
- package/lib/apps/viewer/app.js +28 -0
- package/lib/apps/viewer/embedded.html +52 -52
- package/lib/apps/viewer/index.html +129 -129
- package/lib/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/cli/cifschema/util/generate.js +12 -12
- package/lib/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.d.ts +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/app.js +12 -1
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.d.ts +12 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/camera.js +34 -8
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/behavior/select.js +58 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/model.js +4 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/cellpack/preset.js +8 -6
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/model.js +2 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/generic/preset.js +9 -9
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/mmcif/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/model.js +3 -1
- package/lib/commonjs/apps/mesoscale-explorer/data/petworld/preset.js +6 -4
- package/lib/commonjs/apps/mesoscale-explorer/data/state.d.ts +48 -10
- package/lib/commonjs/apps/mesoscale-explorer/data/state.js +107 -28
- package/lib/commonjs/apps/mesoscale-explorer/data/util.js +2 -3
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.d.ts +23 -1
- package/lib/commonjs/apps/mesoscale-explorer/ui/entities.js +302 -30
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.d.ts +1 -0
- package/lib/commonjs/apps/mesoscale-explorer/ui/panels.js +39 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.d.ts +60 -2
- package/lib/commonjs/apps/mesoscale-explorer/ui/states.js +477 -13
- package/lib/commonjs/apps/viewer/app.d.ts +10 -4
- package/lib/commonjs/apps/viewer/app.js +28 -0
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/create-saccharides.js +9 -9
- package/lib/commonjs/cli/chem-comp-dict/util.js +7 -7
- package/lib/commonjs/cli/cif2bcif/converter.js +1 -2
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +2 -3
- package/lib/commonjs/cli/cifschema/util/generate.js +13 -14
- package/lib/commonjs/cli/cifschema/util/helper.js +1 -2
- package/lib/commonjs/cli/cifschema/util/schema.js +9 -10
- package/lib/commonjs/cli/lipid-params/index.js +9 -9
- package/lib/commonjs/cli/state-docs/pd-to-md.js +1 -2
- package/lib/commonjs/cli/structure-info/helpers.js +2 -3
- package/lib/commonjs/cli/structure-info/model.js +11 -12
- package/lib/commonjs/examples/alpha-orbitals/controls.js +1 -2
- package/lib/commonjs/examples/alpha-orbitals/example-data.js +160 -160
- package/lib/commonjs/examples/basic-wrapper/custom-theme.js +2 -2
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +1 -2
- package/lib/commonjs/examples/lighting/index.d.ts +1 -1
- package/lib/commonjs/examples/lighting/index.js +2 -1
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.d.ts +5 -20
- package/lib/commonjs/examples/proteopedia-wrapper/coloring.js +1 -2
- package/lib/commonjs/examples/proteopedia-wrapper/ui/controls.js +1 -2
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/extensions/alpha-orbitals/collocation.js +1 -2
- package/lib/commonjs/extensions/alpha-orbitals/data-model.js +4 -5
- package/lib/commonjs/extensions/alpha-orbitals/density.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/compute.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/gpu/shader.frag.js +136 -136
- package/lib/commonjs/extensions/alpha-orbitals/orbitals.js +2 -3
- package/lib/commonjs/extensions/alpha-orbitals/spherical-functions.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.d.ts +3 -3
- package/lib/commonjs/extensions/anvil/algorithm.js +5 -5
- package/lib/commonjs/extensions/anvil/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/anvil/behavior.js +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +4 -0
- package/lib/commonjs/extensions/anvil/representation.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/behavior.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/color.d.ts +2 -2
- package/lib/commonjs/extensions/assembly-symmetry/color.js +3 -3
- package/lib/commonjs/extensions/assembly-symmetry/prop.js +27 -27
- package/lib/commonjs/extensions/assembly-symmetry/representation.d.ts +1 -0
- package/lib/commonjs/extensions/assembly-symmetry/representation.js +2 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/behavior.js +7 -7
- package/lib/commonjs/extensions/dnatco/ntc-tube/color.js +3 -3
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.d.ts +3 -0
- package/lib/commonjs/extensions/dnatco/ntc-tube/representation.js +3 -3
- package/lib/commonjs/extensions/g3d/data.js +2 -3
- package/lib/commonjs/extensions/g3d/format.d.ts +3 -3
- package/lib/commonjs/extensions/g3d/model.js +5 -5
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +2 -2
- package/lib/commonjs/extensions/geo-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +41 -41
- package/lib/commonjs/extensions/meshes/examples.js +9 -9
- package/lib/commonjs/extensions/meshes/mesh-extension.d.ts +3 -6
- package/lib/commonjs/extensions/meshes/mesh-extension.js +2 -2
- package/lib/commonjs/extensions/meshes/mesh-streaming/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-streaming/server-info.d.ts +3 -3
- package/lib/commonjs/extensions/meshes/mesh-utils.js +9 -9
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.d.ts +1 -1
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/plddt.js +11 -8
- package/lib/commonjs/extensions/model-archive/quality-assessment/color/qmean.js +3 -3
- package/lib/commonjs/extensions/model-export/export.js +2 -2
- package/lib/commonjs/extensions/model-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mp4-export/controls.d.ts +1 -1
- package/lib/commonjs/extensions/mp4-export/encoder.js +1 -2
- package/lib/commonjs/extensions/mp4-export/ui.d.ts +0 -1
- package/lib/commonjs/extensions/mvs/camera.js +4 -5
- package/lib/commonjs/extensions/mvs/components/annotation-color-theme.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/annotation-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/annotation-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-prop.js +2 -2
- package/lib/commonjs/extensions/mvs/components/annotation-structure-component.js +4 -4
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.d.ts +32 -32
- package/lib/commonjs/extensions/mvs/components/custom-label/representation.js +2 -2
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.d.ts +16 -16
- package/lib/commonjs/extensions/mvs/components/custom-label/visual.js +2 -2
- package/lib/commonjs/extensions/mvs/components/formats.d.ts +6 -6
- package/lib/commonjs/extensions/mvs/components/formats.js +2 -2
- package/lib/commonjs/extensions/mvs/components/is-mvs-model-prop.js +3 -3
- package/lib/commonjs/extensions/mvs/components/multilayer-color-theme.js +3 -3
- package/lib/commonjs/extensions/mvs/components/selector.js +3 -3
- package/lib/commonjs/extensions/mvs/helpers/indexing.d.ts +2 -2
- package/lib/commonjs/extensions/mvs/helpers/label-text.js +1 -2
- package/lib/commonjs/extensions/mvs/helpers/param-definition.js +2 -3
- package/lib/commonjs/extensions/mvs/helpers/schemas.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/schemas.js +2 -2
- package/lib/commonjs/extensions/mvs/helpers/selections.js +6 -7
- package/lib/commonjs/extensions/mvs/helpers/utils.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/helpers/utils.js +7 -7
- package/lib/commonjs/extensions/mvs/load-helpers.d.ts +1 -1
- package/lib/commonjs/extensions/mvs/load-helpers.js +17 -17
- package/lib/commonjs/extensions/mvs/load.js +1 -2
- package/lib/commonjs/extensions/mvs/tree/generic/params-schema.js +8 -8
- package/lib/commonjs/extensions/mvs/tree/generic/tree-schema.js +8 -9
- package/lib/commonjs/extensions/mvs/tree/generic/tree-utils.js +10 -11
- package/lib/commonjs/extensions/mvs/tree/molstar/conversion.js +4 -4
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.d.ts +0 -8
- package/lib/commonjs/extensions/mvs/tree/mvs/mvs-builder.js +3 -3
- package/lib/commonjs/extensions/pdbe/structure-quality-report/color.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/density-fit.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/color/geometry-quality.js +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/color/random-coil-index.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +5 -0
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +5 -5
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/color.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/labels.js +1 -2
- package/lib/commonjs/extensions/sb-ncbr/partial-charges/property.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/algorithm.js +2 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/behavior.js +2 -2
- package/lib/commonjs/extensions/sb-ncbr/tunnels/data-model.d.ts +6 -6
- package/lib/commonjs/extensions/sb-ncbr/tunnels/examples.js +3 -3
- package/lib/commonjs/extensions/sb-ncbr/tunnels/props.js +2 -2
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-root.js +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/entry-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/external-api.js +2 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/global-state.d.ts +3 -3
- package/lib/commonjs/extensions/volumes-and-segmentations/helpers.js +6 -6
- package/lib/commonjs/extensions/volumes-and-segmentations/ui.d.ts +0 -1
- package/lib/commonjs/extensions/zenodo/ui.d.ts +0 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/camera/transition.js +23 -6
- package/lib/commonjs/mol-canvas3d/camera/util.js +3 -4
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +9 -1
- package/lib/commonjs/mol-canvas3d/helper/bounding-sphere-helper.d.ts +1 -6
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +2 -2
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.d.ts +2 -1
- package/lib/commonjs/mol-canvas3d/passes/multi-sample.js +4 -3
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.d.ts +1 -0
- package/lib/commonjs/mol-canvas3d/passes/postprocessing.js +7 -2
- package/lib/commonjs/mol-canvas3d/util.js +3 -4
- package/lib/commonjs/mol-data/db/column-helpers.js +6 -7
- package/lib/commonjs/mol-data/db/column.d.ts +1 -1
- package/lib/commonjs/mol-data/generic/hash-set.js +1 -2
- package/lib/commonjs/mol-data/generic/linked-list.js +1 -2
- package/lib/commonjs/mol-data/int/impl/interval.js +15 -15
- package/lib/commonjs/mol-data/int/impl/ordered-set.js +25 -25
- package/lib/commonjs/mol-data/int/impl/segmentation.js +7 -7
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +31 -31
- package/lib/commonjs/mol-data/int/linked-index.js +1 -2
- package/lib/commonjs/mol-data/util/array.js +5 -6
- package/lib/commonjs/mol-data/util/buckets.js +1 -2
- package/lib/commonjs/mol-data/util/combination.js +2 -2
- package/lib/commonjs/mol-data/util/equivalence-classes.js +2 -2
- package/lib/commonjs/mol-data/util/grouping.js +2 -3
- package/lib/commonjs/mol-data/util/hash-functions.js +9 -10
- package/lib/commonjs/mol-data/util/sort.js +5 -6
- package/lib/commonjs/mol-geo/geometry/base.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.js +3 -3
- package/lib/commonjs/mol-geo/geometry/clipping-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/color-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +3 -0
- package/lib/commonjs/mol-geo/geometry/direct-volume/transfer-function.js +3 -4
- package/lib/commonjs/mol-geo/geometry/emissive-data.js +5 -6
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/marker-data.js +3 -4
- package/lib/commonjs/mol-geo/geometry/mesh/builder/axes.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/box.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/cylinder.js +4 -5
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ellipsoid.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/ribbon.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/builder/sphere.js +2 -3
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +1 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +7 -8
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/size-data.js +9 -9
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -0
- package/lib/commonjs/mol-geo/geometry/substance-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +3 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +7 -7
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -0
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +3 -0
- package/lib/commonjs/mol-geo/geometry/transform-data.js +4 -5
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +5 -6
- package/lib/commonjs/mol-geo/primitive/box.js +3 -4
- package/lib/commonjs/mol-geo/primitive/cage.js +3 -4
- package/lib/commonjs/mol-geo/primitive/circle.js +2 -2
- package/lib/commonjs/mol-geo/primitive/cylinder.js +2 -2
- package/lib/commonjs/mol-geo/primitive/dodecahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/icosahedron.js +2 -3
- package/lib/commonjs/mol-geo/primitive/octahedron.js +4 -4
- package/lib/commonjs/mol-geo/primitive/plane.js +2 -3
- package/lib/commonjs/mol-geo/primitive/polygon.js +1 -2
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +2 -2
- package/lib/commonjs/mol-geo/primitive/primitive.js +4 -5
- package/lib/commonjs/mol-geo/primitive/prism.js +11 -11
- package/lib/commonjs/mol-geo/primitive/pyramid.js +6 -7
- package/lib/commonjs/mol-geo/primitive/sphere.js +2 -3
- package/lib/commonjs/mol-geo/primitive/spiked-ball.js +1 -2
- package/lib/commonjs/mol-geo/primitive/star.js +2 -2
- package/lib/commonjs/mol-geo/primitive/tetrahedron.js +3 -3
- package/lib/commonjs/mol-geo/primitive/torus.js +2 -2
- package/lib/commonjs/mol-geo/primitive/wedge.js +3 -4
- package/lib/commonjs/mol-geo/util/location-iterator.js +3 -4
- package/lib/commonjs/mol-geo/util/marching-cubes/algorithm.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/builder.js +2 -3
- package/lib/commonjs/mol-geo/util/marching-cubes/tables.js +3 -3
- package/lib/commonjs/mol-geo/util.js +7 -8
- package/lib/commonjs/mol-gl/compute/grid3d.js +2 -3
- package/lib/commonjs/mol-gl/compute/hi-z.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +1 -2
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/sum.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/active-voxels.js +1 -2
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +2 -3
- package/lib/commonjs/mol-gl/compute/marching-cubes/tables.js +2 -3
- package/lib/commonjs/mol-gl/compute/util.js +5 -5
- package/lib/commonjs/mol-gl/render-object.js +3 -3
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/cylinders.js +3 -2
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.js +3 -2
- package/lib/commonjs/mol-gl/renderable/image.js +2 -2
- package/lib/commonjs/mol-gl/renderable/lines.js +2 -2
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +1 -0
- package/lib/commonjs/mol-gl/renderable/mesh.js +3 -2
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- package/lib/mol-gl/shader/spheres.frag.js +148 -148
- package/lib/mol-gl/shader/spheres.vert.js +132 -132
- package/lib/mol-gl/shader/ssao-blur.frag.d.ts +1 -1
- package/lib/mol-gl/shader/ssao-blur.frag.js +100 -97
- package/lib/mol-gl/shader/ssao.frag.js +211 -211
- package/lib/mol-gl/shader/text.frag.js +85 -85
- package/lib/mol-gl/shader/text.vert.js +85 -85
- package/lib/mol-gl/shader/util/grid3d-template.frag.js +46 -46
- package/lib/mol-gl/shader-code.js +16 -16
- package/lib/mol-gl/webgl/compat.js +12 -12
- package/lib/mol-gl/webgl/render-item.d.ts +2 -2
- package/lib/mol-io/common/simple-buffer.d.ts +0 -1
- package/lib/mol-io/reader/cif/schema/bird.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.d.ts +1 -1
- package/lib/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/mol-io/reader/cif/schema/mmcif.d.ts +9 -1
- package/lib/mol-io/reader/cif/schema/mmcif.js +9 -1
- package/lib/mol-io/reader/common/text/column/fixed.d.ts +1 -1
- package/lib/mol-io/reader/common/text/column/token.d.ts +1 -1
- package/lib/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/mol-model/loci.d.ts +1 -1
- package/lib/mol-model/sequence/alignment/alignment.d.ts +2 -1
- package/lib/mol-model/structure/model/types/saccharides.js +1 -1
- package/lib/mol-model/structure/model/types.d.ts +3 -3
- package/lib/mol-model/structure/query/queries/generators.js +2 -2
- package/lib/mol-model/structure/structure/properties.d.ts +1 -0
- package/lib/mol-model/structure/structure/properties.js +1 -0
- package/lib/mol-model/volume/volume.d.ts +6 -6
- package/lib/mol-model-formats/shape/ply.d.ts +2 -0
- package/lib/mol-model-formats/structure/basic/schema.d.ts +1 -0
- package/lib/mol-model-formats/structure/common/entity.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +1 -0
- package/lib/mol-model-props/computed/representations/interactions.d.ts +3 -0
- package/lib/mol-model-props/integrative/cross-link-restraint/representation.d.ts +4 -0
- package/lib/mol-model-props/sequence/themes/sifts-mapping.d.ts +2 -2
- package/lib/mol-plugin/behavior/behavior.d.ts +9 -9
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +3 -3
- package/lib/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +4 -4
- package/lib/mol-plugin/commands.d.ts +23 -87
- package/lib/mol-plugin/context.d.ts +3 -2
- package/lib/mol-plugin/context.js +4 -2
- package/lib/mol-plugin/state.d.ts +7 -7
- package/lib/mol-plugin/util/headless-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/headless-screenshot.js +3 -1
- package/lib/mol-plugin/util/viewport-screenshot.d.ts +1 -1
- package/lib/mol-plugin/util/viewport-screenshot.js +2 -1
- package/lib/mol-plugin/version.js +2 -2
- package/lib/mol-plugin-state/actions/volume.d.ts +1 -1
- package/lib/mol-plugin-state/actions/volume.js +4 -12
- package/lib/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/mol-plugin-state/formats/registry.d.ts +1 -1
- package/lib/mol-plugin-state/formats/trajectory.d.ts +9 -9
- package/lib/mol-plugin-state/formats/volume.d.ts +0 -1
- package/lib/mol-plugin-state/manager/structure/hierarchy.d.ts +3 -3
- package/lib/mol-plugin-state/manager/structure/measurement.d.ts +4 -0
- package/lib/mol-plugin-state/objects.d.ts +97 -97
- package/lib/mol-plugin-state/transforms/data.d.ts +10 -1
- package/lib/mol-plugin-state/transforms/data.js +30 -1
- package/lib/mol-plugin-state/transforms/representation.d.ts +6 -0
- package/lib/mol-plugin-ui/base.js +2 -1
- package/lib/mol-plugin-ui/controls/icons.d.ts +5 -0
- package/lib/mol-plugin-ui/controls/icons.js +10 -0
- package/lib/mol-plugin-ui/controls/parameters.d.ts +3 -3
- package/lib/mol-plugin-ui/controls.js +1 -1
- package/lib/mol-plugin-ui/left-panel.d.ts +0 -1
- package/lib/mol-plugin-ui/plugin.js +3 -2
- package/lib/mol-plugin-ui/skin/base/base.scss +37 -37
- package/lib/mol-plugin-ui/skin/base/components/controls-base.scss +333 -333
- package/lib/mol-plugin-ui/skin/base/components/controls.scss +451 -445
- package/lib/mol-plugin-ui/skin/base/components/help.scss +27 -27
- package/lib/mol-plugin-ui/skin/base/components/line-graph.scss +67 -67
- package/lib/mol-plugin-ui/skin/base/components/log.scss +100 -100
- package/lib/mol-plugin-ui/skin/base/components/misc.scss +663 -663
- package/lib/mol-plugin-ui/skin/base/components/sequence.scss +125 -125
- package/lib/mol-plugin-ui/skin/base/components/slider.scss +165 -165
- package/lib/mol-plugin-ui/skin/base/components/tasks.scss +99 -99
- package/lib/mol-plugin-ui/skin/base/components/toast.scss +83 -83
- package/lib/mol-plugin-ui/skin/base/components/transformer.scss +163 -163
- package/lib/mol-plugin-ui/skin/base/components/viewport.scss +194 -194
- package/lib/mol-plugin-ui/skin/base/layout/common.scss +71 -71
- package/lib/mol-plugin-ui/skin/base/layout/controls-landscape.scss +89 -89
- package/lib/mol-plugin-ui/skin/base/layout/controls-outside.scss +98 -98
- package/lib/mol-plugin-ui/skin/base/layout/controls-portrait.scss +108 -108
- package/lib/mol-plugin-ui/skin/base/layout.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/logo.scss +12 -12
- package/lib/mol-plugin-ui/skin/base/normalize.scss +209 -209
- package/lib/mol-plugin-ui/skin/base/ui.scss +40 -40
- package/lib/mol-plugin-ui/skin/base/variables.scss +88 -88
- package/lib/mol-plugin-ui/skin/blue.scss +1 -1
- package/lib/mol-plugin-ui/skin/colors/blue.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/dark.scss +23 -23
- package/lib/mol-plugin-ui/skin/colors/light.scss +29 -29
- package/lib/mol-plugin-ui/skin/dark.scss +1 -1
- package/lib/mol-plugin-ui/skin/light.scss +1 -1
- package/lib/mol-plugin-ui/spec.d.ts +10 -10
- package/lib/mol-plugin-ui/spec.js +1 -1
- package/lib/mol-plugin-ui/state/apply-action.d.ts +1 -1
- package/lib/mol-plugin-ui/state/update-transform.d.ts +1 -1
- package/lib/mol-plugin-ui/structure/quick-styles.d.ts +2 -1
- package/lib/mol-plugin-ui/structure/quick-styles.js +5 -2
- package/lib/mol-plugin-ui/structure/selection.d.ts +2 -2
- package/lib/mol-repr/representation.d.ts +3 -3
- package/lib/mol-repr/shape/loci/angle.d.ts +1 -0
- package/lib/mol-repr/shape/loci/dihedral.d.ts +1 -0
- package/lib/mol-repr/shape/loci/orientation.d.ts +1 -0
- package/lib/mol-repr/shape/loci/plane.d.ts +1 -0
- package/lib/mol-repr/shape/model/unitcell.d.ts +1 -0
- package/lib/mol-repr/structure/complex-visual.d.ts +5 -0
- package/lib/mol-repr/structure/params.d.ts +5 -0
- package/lib/mol-repr/structure/registry.d.ts +11 -0
- package/lib/mol-repr/structure/representation/backbone.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ball-and-stick.d.ts +3 -0
- package/lib/mol-repr/structure/representation/carbohydrate.d.ts +3 -0
- package/lib/mol-repr/structure/representation/cartoon.d.ts +3 -0
- package/lib/mol-repr/structure/representation/ellipsoid.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/gaussian-volume.d.ts +3 -0
- package/lib/mol-repr/structure/representation/molecular-surface.d.ts +3 -0
- package/lib/mol-repr/structure/representation/orientation.d.ts +3 -0
- package/lib/mol-repr/structure/representation/putty.d.ts +3 -0
- package/lib/mol-repr/structure/representation/spacefill.d.ts +3 -0
- package/lib/mol-repr/structure/units-visual.d.ts +5 -0
- package/lib/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/element-sphere.d.ts +4 -0
- package/lib/mol-repr/structure/visual/ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/gaussian-density-volume.d.ts +2 -0
- package/lib/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +4 -0
- package/lib/mol-repr/structure/visual/molecular-surface-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-bond.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-element.d.ts +2 -0
- package/lib/mol-repr/structure/visual/nucleotide-atomic-ring-fill.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +2 -0
- package/lib/mol-repr/structure/visual/polymer-direction-wedge.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-trace-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/polymer-tube-mesh.d.ts +1 -0
- package/lib/mol-repr/structure/visual/util/nucleotide.d.ts +60 -60
- package/lib/mol-repr/volume/direct-volume.d.ts +48 -45
- package/lib/mol-repr/volume/isosurface.d.ts +95 -90
- package/lib/mol-repr/volume/registry.d.ts +63 -60
- package/lib/mol-repr/volume/segment.d.ts +80 -75
- package/lib/mol-repr/volume/slice.d.ts +45 -45
- package/lib/mol-script/language/symbol-table/core.d.ts +1 -1
- package/lib/mol-state/object.d.ts +4 -4
- package/lib/mol-state/state.d.ts +4 -4
- package/lib/mol-state/transform.d.ts +1 -1
- package/lib/mol-state/transformer.d.ts +1 -1
- package/lib/mol-task/util/scheduler.d.ts +0 -1
- package/lib/mol-theme/color/atom-id.d.ts +2 -2
- package/lib/mol-theme/color/chain-id.d.ts +2 -2
- package/lib/mol-theme/color/element-index.d.ts +2 -2
- package/lib/mol-theme/color/entity-id.d.ts +2 -2
- package/lib/mol-theme/color/entity-source.d.ts +2 -2
- package/lib/mol-theme/color/external-volume.d.ts +2 -2
- package/lib/mol-theme/color/model-index.d.ts +2 -2
- package/lib/mol-theme/color/operator-hkl.d.ts +2 -2
- package/lib/mol-theme/color/operator-name.d.ts +2 -2
- package/lib/mol-theme/color/polymer-id.d.ts +2 -2
- package/lib/mol-theme/color/polymer-index.d.ts +2 -2
- package/lib/mol-theme/color/structure-index.d.ts +2 -2
- package/lib/mol-theme/color/trajectory-index.d.ts +2 -2
- package/lib/mol-theme/color/unit-index.d.ts +2 -2
- package/lib/mol-theme/color/volume-segment.d.ts +2 -2
- package/lib/mol-theme/color.d.ts +16 -16
- package/lib/mol-theme/theme.d.ts +3 -3
- package/lib/mol-util/color/palette.d.ts +4 -3
- package/lib/mol-util/color/scale.d.ts +2 -1
- package/lib/mol-util/data-source.d.ts +0 -1
- package/lib/mol-util/nodejs-shims.d.ts +1 -1
- package/lib/servers/common/swagger-ui/indexTemplate.js +66 -66
- package/lib/servers/model/config.d.ts +4 -4
- package/lib/servers/model/utils/tar.d.ts +0 -1
- package/lib/servers/volume/common/binary-schema.d.ts +0 -1
- package/lib/servers/volume/common/data-format.d.ts +0 -1
- package/lib/servers/volume/config.d.ts +1 -5
- package/lib/servers/volume/config.js +5 -5
- package/package.json +197 -196
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"use strict";
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const SnapshotDescription = ((_d = (_c = this.plugin.spec.components) === null || _c === void 0 ? void 0 : _c.viewport) === null || _d === void 0 ? void 0 : _d.snapshotDescription) || controls_1.ViewportSnapshotDescription;
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return (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(viewport_1.Viewport, {}), (0, jsx_runtime_1.jsxs)("div", { className: 'msp-viewport-top-left-controls', children: [(0, jsx_runtime_1.jsx)(controls_1.AnimationViewportControls, {}), (0, jsx_runtime_1.jsx)(controls_1.TrajectoryViewportControls, {}), (0, jsx_runtime_1.jsx)(controls_1.StateSnapshotViewportControls, {}), (0, jsx_runtime_1.jsx)(SnapshotDescription, {})] }), (0, jsx_runtime_1.jsx)(controls_1.SelectionViewportControls, {}), (0, jsx_runtime_1.jsx)(VPControls, {}), (0, jsx_runtime_1.jsx)(task_1.BackgroundTaskProgress, {}), (0, jsx_runtime_1.jsxs)("div", { className: 'msp-highlight-toast-wrapper', children: [(0, jsx_runtime_1.jsx)(controls_1.LociLabels, {}), (0, jsx_runtime_1.jsx)(toast_1.Toasts, {})] })] });
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(0, client_1.createRoot)(target).render(element);
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exports.renderReact18 = renderReact18;
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.SequenceView =
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exports.SequenceView = void 0;
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exports.opKey = opKey;
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exports.splitModelEntityId = splitModelEntityId;
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exports.getSequenceWrapper = getSequenceWrapper;
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exports.getModelEntityOptions = getModelEntityOptions;
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exports.getChainOptions = getChainOptions;
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exports.getOperatorOptions = getOperatorOptions;
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exports.getStructureOptions = getStructureOptions;
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/**
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const spgrOp = structure_1.StructureProperties.unit.spgrOp(l);
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return `${ids.sort().join(',')}|${ncs}|${hkl}|${spgrOp}`;
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|
|
@@ -100,7 +105,6 @@ function getSequenceWrapper(state, structureSelection) {
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@@ -134,7 +138,6 @@ function getModelEntityOptions(structure, polymersOnly = false) {
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@@ -162,7 +165,6 @@ function getChainOptions(structure, modelEntityId) {
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exports.getChainOptions = getChainOptions;
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function getOperatorOptions(structure, modelEntityId, chainGroupId) {
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|
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|
|
@@ -190,7 +192,6 @@ function getOperatorOptions(structure, modelEntityId, chainGroupId) {
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options.push(['', 'No operators']);
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exports.getOperatorOptions = getOperatorOptions;
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|
@@ -206,7 +207,6 @@ function getStructureOptions(state) {
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}
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exports.getStructureOptions = getStructureOptions;
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const SequenceViewModeParam = param_definition_1.ParamDefinition.Select('single', [['single', 'Chain'], ['polymers', 'Polymers'], ['all', 'Everything']]);
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class SequenceView extends base_1.PluginUIComponent {
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constructor() {
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@@ -1,10 +1,9 @@
|
|
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1
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|
/**
|
|
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|
-
* Copyright (c) 2018-
|
|
2
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
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|
*
|
|
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* @author David Sehnal <david.sehnal@gmail.com>
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|
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*/
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|
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|
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/// <reference types="react" />
|
|
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|
import { StateTransformParameters } from '../mol-plugin-ui/state/common';
|
|
9
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|
import { PluginSpec } from '../mol-plugin/spec';
|
|
10
9
|
import { StateAction, StateTransformer } from '../mol-state';
|
|
@@ -14,13 +13,14 @@ interface PluginUISpec extends PluginSpec {
|
|
|
14
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|
components?: {
|
|
15
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|
controls?: PluginUISpec.LayoutControls;
|
|
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|
remoteState?: 'none' | 'default';
|
|
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|
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structureTools?: React.ComponentClass;
|
|
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|
+
structureTools?: React.ComponentClass | React.FC;
|
|
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|
viewport?: {
|
|
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|
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view?: React.ComponentClass;
|
|
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|
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controls?: React.ComponentClass;
|
|
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|
+
view?: React.ComponentClass | React.FC;
|
|
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|
+
controls?: React.ComponentClass | React.FC;
|
|
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|
+
snapshotDescription?: React.ComponentClass | React.FC;
|
|
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21
|
};
|
|
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|
sequenceViewer?: {
|
|
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|
-
view?: React.ComponentClass;
|
|
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|
+
view?: React.ComponentClass | React.FC;
|
|
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|
};
|
|
25
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|
hideTaskOverlay?: boolean;
|
|
26
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|
disableDragOverlay?: boolean;
|
|
@@ -28,10 +28,10 @@ interface PluginUISpec extends PluginSpec {
|
|
|
28
28
|
}
|
|
29
29
|
declare namespace PluginUISpec {
|
|
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|
interface LayoutControls {
|
|
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|
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top?: React.ComponentClass | 'none';
|
|
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|
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left?: React.ComponentClass | 'none';
|
|
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|
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right?: React.ComponentClass | 'none';
|
|
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|
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bottom?: React.ComponentClass | 'none';
|
|
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|
+
top?: React.ComponentClass | React.FC | 'none';
|
|
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|
+
left?: React.ComponentClass | React.FC | 'none';
|
|
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|
+
right?: React.ComponentClass | React.FC | 'none';
|
|
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|
+
bottom?: React.ComponentClass | React.FC | 'none';
|
|
35
35
|
}
|
|
36
36
|
}
|
|
37
37
|
export declare const DefaultPluginUISpec: () => PluginUISpec;
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
/**
|
|
3
|
-
* Copyright (c) 2018-
|
|
3
|
+
* Copyright (c) 2018-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
4
4
|
*
|
|
5
5
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
6
6
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
@@ -37,7 +37,7 @@ declare class ApplyActionControl extends TransformControlBase<ApplyActionControl
|
|
|
37
37
|
getTransformerId(): import("../../mol-state").StateTransformer.Id;
|
|
38
38
|
getHeader(): "none" | {
|
|
39
39
|
readonly name: string;
|
|
40
|
-
readonly description?: string
|
|
40
|
+
readonly description?: string;
|
|
41
41
|
};
|
|
42
42
|
canApply(): boolean;
|
|
43
43
|
canAutoApply(): boolean;
|
|
@@ -30,7 +30,7 @@ declare class UpdateTransformControl extends TransformControlBase<UpdateTransfor
|
|
|
30
30
|
getTransformerId(): StateTransformer.Id;
|
|
31
31
|
getHeader(): "none" | {
|
|
32
32
|
readonly name: string;
|
|
33
|
-
readonly description?: string
|
|
33
|
+
readonly description?: string;
|
|
34
34
|
};
|
|
35
35
|
canApply(): boolean;
|
|
36
36
|
applyText(): "Update" | "Nothing to Update";
|
|
@@ -1,7 +1,8 @@
|
|
|
1
1
|
/**
|
|
2
|
-
* Copyright (c) 2022-
|
|
2
|
+
* Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
3
3
|
*
|
|
4
4
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
5
|
+
* @author David Sehnal <david.sehnal@gmail.com>
|
|
5
6
|
*/
|
|
6
7
|
import { CollapsableControls, PurePluginUIComponent } from '../base';
|
|
7
8
|
import { MagicWandSvg } from '../controls/icons';
|
|
@@ -3,9 +3,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
3
3
|
exports.QuickStyles = exports.StructureQuickStylesControls = void 0;
|
|
4
4
|
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
5
5
|
/**
|
|
6
|
-
* Copyright (c) 2022-
|
|
6
|
+
* Copyright (c) 2022-2024 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
7
7
|
*
|
|
8
8
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
9
|
+
* @author David Sehnal <david.sehnal@gmail.com>
|
|
9
10
|
*/
|
|
10
11
|
const representation_preset_1 = require("../../mol-plugin-state/builder/structure/representation-preset");
|
|
11
12
|
const color_1 = require("../../mol-util/color");
|
|
@@ -65,6 +66,7 @@ class QuickStyles extends base_1.PurePluginUIComponent {
|
|
|
65
66
|
radius: 5,
|
|
66
67
|
bias: 0.8,
|
|
67
68
|
blurKernelSize: 15,
|
|
69
|
+
blurDepthBias: 0.5,
|
|
68
70
|
samples: 32,
|
|
69
71
|
resolutionScale: 1,
|
|
70
72
|
color: (0, color_1.Color)(0x000000),
|
|
@@ -101,6 +103,7 @@ class QuickStyles extends base_1.PurePluginUIComponent {
|
|
|
101
103
|
radius: 5,
|
|
102
104
|
bias: 0.8,
|
|
103
105
|
blurKernelSize: 15,
|
|
106
|
+
blurDepthBias: 0.5,
|
|
104
107
|
samples: 32,
|
|
105
108
|
resolutionScale: 1,
|
|
106
109
|
color: (0, color_1.Color)(0x000000),
|
|
@@ -112,7 +115,7 @@ class QuickStyles extends base_1.PurePluginUIComponent {
|
|
|
112
115
|
}
|
|
113
116
|
}
|
|
114
117
|
render() {
|
|
115
|
-
return (0, jsx_runtime_1.jsxs)("div", { className: 'msp-flex-row', children: [(0, jsx_runtime_1.jsx)(common_1.Button, { noOverflow: true, title: 'Applies default representation preset
|
|
118
|
+
return (0, jsx_runtime_1.jsxs)("div", { className: 'msp-flex-row', children: [(0, jsx_runtime_1.jsx)(common_1.Button, { noOverflow: true, title: 'Applies default representation preset and sets outline and occlusion effects to default', onClick: () => this.default(), style: { width: 'auto' }, children: "Default" }), (0, jsx_runtime_1.jsx)(common_1.Button, { noOverflow: true, title: 'Applies illustrative representation preset and Stylize it', onClick: () => this.illustrative(), style: { width: 'auto' }, children: "Illustrative" }), (0, jsx_runtime_1.jsx)(common_1.Button, { noOverflow: true, title: 'Does not change representation, enables outline and occlusion effects, enables ignore-light representation parameter', onClick: () => this.stylized(), style: { width: 'auto' }, children: "Stylize Current" })] });
|
|
116
119
|
}
|
|
117
120
|
}
|
|
118
121
|
exports.QuickStyles = QuickStyles;
|
|
@@ -29,8 +29,8 @@ interface StructureSelectionActionsControlsState {
|
|
|
29
29
|
}
|
|
30
30
|
export declare class StructureSelectionActionsControls extends PluginUIComponent<{}, StructureSelectionActionsControlsState> {
|
|
31
31
|
state: {
|
|
32
|
-
action: "
|
|
33
|
-
helper: "
|
|
32
|
+
action: StructureSelectionActionsControlsState["action"];
|
|
33
|
+
helper: StructureSelectionActionsControlsState["helper"];
|
|
34
34
|
isEmpty: boolean;
|
|
35
35
|
isBusy: boolean;
|
|
36
36
|
canUndo: boolean;
|
|
@@ -1,6 +1,7 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
exports.
|
|
3
|
+
exports.BackgroundTaskProgress = BackgroundTaskProgress;
|
|
4
|
+
exports.OverlayTaskProgress = OverlayTaskProgress;
|
|
4
5
|
const jsx_runtime_1 = require("react/jsx-runtime");
|
|
5
6
|
/**
|
|
6
7
|
* Copyright (c) 2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
|
|
@@ -34,7 +35,6 @@ function BackgroundTaskProgress() {
|
|
|
34
35
|
}, [plugin]);
|
|
35
36
|
return (0, jsx_runtime_1.jsxs)("div", { className: 'msp-background-tasks', children: [tracked.valueSeq().map(e => (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id)), (0, jsx_runtime_1.jsx)(CanvasCommitState, {})] });
|
|
36
37
|
}
|
|
37
|
-
exports.BackgroundTaskProgress = BackgroundTaskProgress;
|
|
38
38
|
function CanvasCommitState() {
|
|
39
39
|
var _a;
|
|
40
40
|
const plugin = (0, react_1.useContext)(base_1.PluginReactContext);
|
|
@@ -91,4 +91,3 @@ function OverlayTaskProgress() {
|
|
|
91
91
|
return null;
|
|
92
92
|
return (0, jsx_runtime_1.jsx)("div", { className: 'msp-overlay-tasks', children: tracked.valueSeq().map(e => (0, jsx_runtime_1.jsx)(ProgressEntry, { event: e }, e.id)) });
|
|
93
93
|
}
|
|
94
|
-
exports.OverlayTaskProgress = OverlayTaskProgress;
|
|
@@ -68,7 +68,7 @@ export declare class RepresentationRegistry<D, S extends Representation.State> {
|
|
|
68
68
|
private _name;
|
|
69
69
|
get default(): {
|
|
70
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exports.
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exports.AngleRepresentation = AngleRepresentation;
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function AngleRepresentation(ctx, getParams) {
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exports.AngleRepresentation = AngleRepresentation;
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flatShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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* @author Alexander Rose <alexander.rose@weirdbyte.de>
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*/
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exports.
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exports.DihedralParams = void 0;
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exports.DihedralRepresentation = DihedralRepresentation;
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const loci_1 = require("../../../mol-model/loci");
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const lines_1 = require("../../../mol-geo/geometry/lines/lines");
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const text_1 = require("../../../mol-geo/geometry/text/text");
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@@ -279,4 +280,3 @@ function getTextShape(ctx, data, props, shape) {
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exports.DihedralRepresentation = DihedralRepresentation;
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* @author Alexander Rose <alexander.rose@weirdbyte.de>
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*/
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.
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exports.DistanceParams = void 0;
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exports.DistanceRepresentation = DistanceRepresentation;
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@@ -105,4 +106,3 @@ function getTextShape(ctx, data, props, shape) {
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function DistanceRepresentation(ctx, getParams) {
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return representation_2.Representation.createMulti('Distance', ctx, getParams, representation_2.Representation.StateBuilder, DistanceVisuals);
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}
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exports.DistanceRepresentation = DistanceRepresentation;
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@@ -6,7 +6,8 @@
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* @author David Sehnal <david.sehnal@gmail.com>
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*/
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.
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exports.LabelParams = void 0;
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exports.LabelRepresentation = LabelRepresentation;
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const param_definition_1 = require("../../../mol-util/param-definition");
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@@ -74,4 +75,3 @@ function getTextShape(ctx, data, props, shape) {
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function LabelRepresentation(ctx, getParams) {
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return representation_2.Representation.createMulti('Label', ctx, getParams, representation_2.Representation.StateBuilder, LabelVisuals);
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exports.LabelRepresentation = LabelRepresentation;
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@@ -18,6 +18,7 @@ export declare const OrientationParams: {
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ignoreLight: PD.BooleanParam;
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celShaded: PD.BooleanParam;
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xrayShaded: PD.Select<boolean | "inverted">;
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transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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@@ -5,7 +5,8 @@
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* @author Alexander Rose <alexander.rose@weirdbyte.de>
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*/
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Object.defineProperty(exports, "__esModule", { value: true });
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|
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exports.
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|
8
|
+
exports.OrientationParams = void 0;
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9
|
+
exports.OrientationRepresentation = OrientationRepresentation;
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const param_definition_1 = require("../../../mol-util/param-definition");
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const names_1 = require("../../../mol-util/color/names");
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const representation_1 = require("../representation");
|
|
@@ -112,4 +113,3 @@ function OrientationRepresentation(ctx, getParams) {
|
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repr.setState({ markerActions: marker_action_1.MarkerActions.Highlighting });
|
|
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return repr;
|
|
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}
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exports.OrientationRepresentation = OrientationRepresentation;
|
|
@@ -17,6 +17,7 @@ export declare const PlaneParams: {
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|
flipSided: PD.BooleanParam;
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|
18
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|
flatShaded: PD.BooleanParam;
|
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19
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|
ignoreLight: PD.BooleanParam;
|
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|
+
celShaded: PD.BooleanParam;
|
|
20
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|
xrayShaded: PD.Select<boolean | "inverted">;
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21
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|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
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bumpFrequency: PD.Numeric;
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@@ -5,7 +5,8 @@
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* @author Alexander Rose <alexander.rose@weirdbyte.de>
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*/
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7
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|
Object.defineProperty(exports, "__esModule", { value: true });
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|
8
|
-
exports.
|
|
8
|
+
exports.PlaneParams = void 0;
|
|
9
|
+
exports.PlaneRepresentation = PlaneRepresentation;
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|
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|
const param_definition_1 = require("../../../mol-util/param-definition");
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|
const names_1 = require("../../../mol-util/color/names");
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11
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|
const representation_1 = require("../representation");
|
|
@@ -63,4 +64,3 @@ function PlaneRepresentation(ctx, getParams) {
|
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|
63
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|
repr.setState({ markerActions: marker_action_1.MarkerActions.Highlighting });
|
|
64
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|
return repr;
|
|
65
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|
}
|
|
66
|
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exports.PlaneRepresentation = PlaneRepresentation;
|
|
@@ -20,6 +20,7 @@ export declare const UnitcellParams: {
|
|
|
20
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|
flipSided: PD.BooleanParam;
|
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21
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|
flatShaded: PD.BooleanParam;
|
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22
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|
ignoreLight: PD.BooleanParam;
|
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23
|
+
celShaded: PD.BooleanParam;
|
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|
xrayShaded: PD.Select<boolean | "inverted">;
|
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24
25
|
transparentBackfaces: PD.Select<"on" | "off" | "opaque">;
|
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|
bumpFrequency: PD.Numeric;
|
|
@@ -5,7 +5,9 @@
|
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|
5
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|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
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|
6
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|
*/
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|
7
7
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
8
|
-
exports.
|
|
8
|
+
exports.UnitcellParams = void 0;
|
|
9
|
+
exports.getUnitcellData = getUnitcellData;
|
|
10
|
+
exports.UnitcellRepresentation = UnitcellRepresentation;
|
|
9
11
|
const structure_1 = require("../../../mol-model/structure");
|
|
10
12
|
const representation_1 = require("../representation");
|
|
11
13
|
const shape_1 = require("../../../mol-model/shape");
|
|
@@ -80,8 +82,6 @@ function getUnitcellData(model, symmetry, props) {
|
|
|
80
82
|
}
|
|
81
83
|
return { symmetry, ref };
|
|
82
84
|
}
|
|
83
|
-
exports.getUnitcellData = getUnitcellData;
|
|
84
85
|
function UnitcellRepresentation(ctx, getParams) {
|
|
85
86
|
return representation_2.Representation.createMulti('Unit Cell', ctx, getParams, representation_2.Representation.StateBuilder, UnitcellVisuals);
|
|
86
87
|
}
|
|
87
|
-
exports.UnitcellRepresentation = UnitcellRepresentation;
|
|
@@ -5,7 +5,7 @@
|
|
|
5
5
|
* @author Alexander Rose <alexander.rose@weirdbyte.de>
|
|
6
6
|
*/
|
|
7
7
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
8
|
-
exports.ShapeRepresentation =
|
|
8
|
+
exports.ShapeRepresentation = ShapeRepresentation;
|
|
9
9
|
const geometry_1 = require("../../mol-geo/geometry/geometry");
|
|
10
10
|
const representation_1 = require("../representation");
|
|
11
11
|
const shape_1 = require("../../mol-model/shape");
|
|
@@ -273,7 +273,6 @@ function ShapeRepresentation(getShape, geometryUtils, builder = {}) {
|
|
|
273
273
|
}
|
|
274
274
|
};
|
|
275
275
|
}
|
|
276
|
-
exports.ShapeRepresentation = ShapeRepresentation;
|
|
277
276
|
function eachShapeGroup(loci, shape, apply) {
|
|
278
277
|
if (!shape_1.ShapeGroup.isLoci(loci))
|
|
279
278
|
return false;
|
|
@@ -6,7 +6,7 @@
|
|
|
6
6
|
* @author David Sehnal <david.sehnal@gmail.com>
|
|
7
7
|
*/
|
|
8
8
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
9
|
-
exports.ComplexRepresentation =
|
|
9
|
+
exports.ComplexRepresentation = ComplexRepresentation;
|
|
10
10
|
const param_definition_1 = require("../../mol-util/param-definition");
|
|
11
11
|
const representation_1 = require("./representation");
|
|
12
12
|
const representation_2 = require("../representation");
|
|
@@ -179,4 +179,3 @@ function ComplexRepresentation(label, ctx, getParams, visualCtor) {
|
|
|
179
179
|
destroy
|
|
180
180
|
};
|
|
181
181
|
}
|
|
182
|
-
exports.ComplexRepresentation = ComplexRepresentation;
|